| http://purl.uniprot.org/unirules/MF_02127#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:756143 up:source unirule:MF_02127 .
_:756144 up:source unirule:MF_02127 .
_:756145 up:source unirule:MF_02127 .
_:756146 up:source unirule:MF_02127 .
_:756147 up:source unirule:MF_02127 .
_:756148 up:source unirule:MF_02127 .
_:756149 up:source unirule:MF_02127 .
_:756150 up:source unirule:MF_02127 .
_:756151 up:source unirule:MF_02127 .
_:756152 up:source unirule:MF_02127 .
_:756153 up:source unirule:MF_02127 .
_:756154 up:source unirule:MF_02127 .
_:756155 up:source unirule:MF_02127 .
_:756156 up:source unirule:MF_02127 .
_:756157 up:source unirule:MF_02127 .
_:756158 up:source unirule:MF_02127 .
_:756159 up:source unirule:MF_02127 .
_:756160 up:source unirule:MF_02127 .
_:756161 up:source unirule:MF_02127 .
_:756162 up:source unirule:MF_02127 .
_:756163 up:source unirule:MF_02127 .
_:756164 up:source unirule:MF_02127 .
_:756165 up:source unirule:MF_02127 .
_:756166 up:source unirule:MF_02127 .
_:756167 up:source unirule:MF_02127 .
_:756168 up:source unirule:MF_02127 .
_:756169 up:source unirule:MF_02127 .
_:756170 up:source unirule:MF_02127 .
_:756171 up:source unirule:MF_02127 .
_:756172 up:source unirule:MF_02127 .
_:756173 up:source unirule:MF_02127 .
_:756174 up:source unirule:MF_02127 .
_:756175 up:source unirule:MF_02127 .
_:756176 up:source unirule:MF_02127 .
_:756177 up:source unirule:MF_02127 .
_:756178 up:source unirule:MF_02127 .
_:756179 up:source unirule:MF_02127 .
_:756180 up:source unirule:MF_02127 .
?this up:annotation ?annotation2 ,
?annotation4 ,
?annotation6 ;
up:classifiedWith GO:0005536 ,
GO:0008270 ,
GO:0019595 ,
GO:0047936 ,
GO:0070401 ,
GO:0070403 ,
keyword:119 ,
keyword:479 ,
keyword:520 ,
keyword:521 ,
keyword:547 ,
keyword:560 ,
keyword:862 ;
up:recommendedName ?name0 .
?name0 up:ecName '1.1.1.47' ;
up:fullName 'Glucose 1-dehydrogenase' ;
up:shortName 'GDH' ,
'GlcDH' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'gdh' .
?annotation2 up:activity ?activity3 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity3 up:catalyticActivity ;
up:enzymeClass .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the zinc-containing alcohol dehydrogenase family. Glucose 1-dehydrogenase subfamily.' .
?pfs11 up:annotation ?annotation12 .
?annotation12 faldo:begin ?pfsb13 ;
faldo:end ?pfse14 ;
up:ligand ?ligand15 ;
rdf:type up:Binding_Site_Annotation .
?pfsb13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfse14 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?ligand15 rdfs:subClassOf chebi:58349 .
?pfs18 up:annotation ?annotation19 ,
?annotation25 ,
?annotation31 ,
?annotation37 .
?annotation19 faldo:begin ?pfsb20 ;
faldo:end ?pfse21 ;
up:ligand ?ligand22 ;
rdf:type up:Binding_Site_Annotation .
?pfsb20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfse21 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?ligand22 rdfs:subClassOf chebi:29105 .
?annotation25 faldo:begin ?pfsb26 ;
faldo:end ?pfse27 ;
up:ligand ?ligand28 ;
rdf:type up:Binding_Site_Annotation .
?pfsb26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?pfse27 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?ligand28 rdfs:subClassOf chebi:29105 .
?annotation31 faldo:begin ?pfsb32 ;
faldo:end ?pfse33 ;
up:ligand ?ligand34 ;
rdf:type up:Binding_Site_Annotation .
?pfsb32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?pfse33 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?ligand34 rdfs:subClassOf chebi:29105 .
?annotation37 faldo:begin ?pfsb38 ;
faldo:end ?pfse39 ;
up:ligand ?ligand40 ;
rdf:type up:Binding_Site_Annotation .
?pfsb38 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?pfse39 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?ligand40 rdfs:subClassOf chebi:29105 .
?pfs43 up:annotation ?annotation44 ,
?annotation50 ,
?annotation56 ,
?annotation62 .
?annotation44 faldo:begin ?pfsb45 ;
faldo:end ?pfse46 ;
up:ligand ?ligand47 ;
rdf:type up:Binding_Site_Annotation .
?pfsb45 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?pfse46 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?ligand47 rdfs:subClassOf chebi:29105 .
?annotation50 faldo:begin ?pfsb51 ;
faldo:end ?pfse52 ;
up:ligand ?ligand53 ;
rdf:type up:Binding_Site_Annotation .
?pfsb51 faldo:position ?thisPositionOn54 ;
rdf:type faldo:ExactPosition .
?pfse52 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
?ligand53 rdfs:subClassOf chebi:29105 .
?annotation56 faldo:begin ?pfsb57 ;
faldo:end ?pfse58 ;
up:ligand ?ligand59 ;
rdf:type up:Binding_Site_Annotation .
?pfsb57 faldo:position ?thisPositionOn60 ;
rdf:type faldo:ExactPosition .
?pfse58 faldo:position ?thisPositionOn61 ;
rdf:type faldo:ExactPosition .
?ligand59 rdfs:subClassOf chebi:29105 .
?annotation62 faldo:begin ?pfsb63 ;
faldo:end ?pfse64 ;
up:ligand ?ligand65 ;
rdf:type up:Binding_Site_Annotation .
?pfsb63 faldo:position ?thisPositionOn66 ;
rdf:type faldo:ExactPosition .
?pfse64 faldo:position ?thisPositionOn67 ;
rdf:type faldo:ExactPosition .
?ligand65 rdfs:subClassOf chebi:29105 .
?pfs68 up:annotation ?annotation69 .
?annotation69 faldo:begin ?pfsb70 ;
faldo:end ?pfse71 ;
up:ligand ?ligand72 ;
rdf:type up:Binding_Site_Annotation .
?pfsb70 faldo:position ?thisPositionOn73 ;
rdf:type faldo:ExactPosition .
?pfse71 faldo:position ?thisPositionOn74 ;
rdf:type faldo:ExactPosition .
?ligand72 rdfs:subClassOf chebi:58349 .
?pfs75 up:annotation ?annotation76 .
?annotation76 faldo:begin ?pfsb77 ;
faldo:end ?pfse78 ;
up:ligand ?ligand79 ;
rdf:type up:Binding_Site_Annotation .
?pfsb77 faldo:position ?thisPositionOn80 ;
rdf:type faldo:ExactPosition .
?pfse78 faldo:position ?thisPositionOn81 ;
rdf:type faldo:ExactPosition .
?ligand79 rdfs:subClassOf chebi:58349 .
?pfs82 up:annotation ?annotation83 .
?annotation83 faldo:begin ?pfsb84 ;
faldo:end ?pfse85 ;
up:ligand ?ligand86 ;
rdf:type up:Binding_Site_Annotation .
?pfsb84 faldo:position ?thisPositionOn87 ;
rdf:type faldo:ExactPosition .
?pfse85 faldo:position ?thisPositionOn88 ;
rdf:type faldo:ExactPosition .
?ligand86 rdfs:subClassOf chebi:58349 .
?pfs89 up:annotation ?annotation90 .
?annotation90 faldo:begin ?pfsb91 ;
faldo:end ?pfse92 ;
up:ligand ?ligand93 ;
rdf:type up:Binding_Site_Annotation .
?pfsb91 faldo:position ?thisPositionOn95 ;
rdf:type faldo:ExactPosition .
?pfse92 faldo:position ?thisPositionOn96 ;
rdf:type faldo:ExactPosition .
?ligand93 rdfs:subClassOf ?molecule94 .
?molecule94 rdfs:label 'substrate' .
?pfs97 up:annotation ?annotation98 .
?annotation98 faldo:begin ?pfsb99 ;
faldo:end ?pfse100 ;
up:ligand ?ligand101 ;
rdf:type up:Binding_Site_Annotation .
?pfsb99 faldo:position ?thisPositionOn103 ;
rdf:type faldo:ExactPosition .
?pfse100 faldo:position ?thisPositionOn104 ;
rdf:type faldo:ExactPosition .
?ligand101 rdfs:subClassOf ?molecule102 .
?molecule102 rdfs:label 'substrate' .
?pfs105 up:annotation ?annotation106 .
?annotation106 faldo:begin ?pfsb107 ;
faldo:end ?pfse108 ;
up:ligand ?ligand109 ;
rdf:type up:Binding_Site_Annotation .
?pfsb107 faldo:position ?thisPositionOn111 ;
rdf:type faldo:ExactPosition .
?pfse108 faldo:position ?thisPositionOn112 ;
rdf:type faldo:ExactPosition .
?ligand109 rdfs:subClassOf ?molecule110 .
?molecule110 rdfs:label 'substrate' .
?pfs113 up:annotation ?annotation114 .
?annotation114 faldo:begin ?pfsb115 ;
faldo:end ?pfse116 ;
up:ligand ?ligand117 ;
rdf:type up:Binding_Site_Annotation .
?pfsb115 faldo:position ?thisPositionOn119 ;
rdf:type faldo:ExactPosition .
?pfse116 faldo:position ?thisPositionOn120 ;
rdf:type faldo:ExactPosition .
?ligand117 rdfs:subClassOf ?molecule118 .
?molecule118 rdfs:label 'substrate' .
?pfs121 up:annotation ?annotation122 .
?annotation122 faldo:begin ?pfsb123 ;
faldo:end ?pfse124 ;
up:ligand ?ligand125 ;
rdf:type up:Binding_Site_Annotation .
?pfsb123 faldo:position ?thisPositionOn127 ;
rdf:type faldo:ExactPosition .
?pfse124 faldo:position ?thisPositionOn128 ;
rdf:type faldo:ExactPosition .
?ligand125 rdfs:subClassOf ?molecule126 .
?molecule126 rdfs:label 'substrate' .
?pfs129 up:annotation ?annotation130 .
?annotation130 faldo:begin ?pfsb131 ;
faldo:end ?pfse132 ;
up:ligand ?ligand133 ;
rdf:type up:Binding_Site_Annotation .
?pfsb131 faldo:position ?thisPositionOn135 ;
rdf:type faldo:ExactPosition .
?pfse132 faldo:position ?thisPositionOn136 ;
rdf:type faldo:ExactPosition .
?ligand133 rdfs:subClassOf ?molecule134 .
?molecule134 rdfs:label 'substrate' .
?pfs137 up:annotation ?annotation138 .
?annotation138 faldo:begin ?pfsb139 ;
faldo:end ?pfse140 ;
up:ligand ?ligand141 ;
rdf:type up:Binding_Site_Annotation .
?pfsb139 faldo:position ?thisPositionOn142 ;
rdf:type faldo:ExactPosition .
?pfse140 faldo:position ?thisPositionOn143 ;
rdf:type faldo:ExactPosition .
?ligand141 rdfs:subClassOf chebi:58349 .
?pfs144 up:annotation ?annotation145 .
?annotation145 faldo:begin ?pfsb146 ;
faldo:end ?pfse147 ;
up:ligand ?ligand148 ;
rdf:type up:Binding_Site_Annotation .
?pfsb146 faldo:position ?thisPositionOn149 ;
rdf:type faldo:ExactPosition .
?pfse147 faldo:position ?thisPositionOn150 ;
rdf:type faldo:ExactPosition .
?ligand148 rdfs:subClassOf chebi:58349 .
_:756181 a rdf:Statement ;
up:attribution _:756143 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:756182 a rdf:Statement ;
up:attribution _:756144 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:756183 a rdf:Statement ;
up:attribution _:756145 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:756184 a rdf:Statement ;
up:attribution _:756146 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:756185 a rdf:Statement ;
up:attribution _:756147 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:756186 a rdf:Statement ;
up:attribution _:756148 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:119 .
_:756187 a rdf:Statement ;
up:attribution _:756149 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:756188 a rdf:Statement ;
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rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:520 .
_:756189 a rdf:Statement ;
up:attribution _:756151 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:521 .
_:756190 a rdf:Statement ;
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rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:756191 a rdf:Statement ;
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rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:560 .
_:756192 a rdf:Statement ;
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rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:862 .
_:756193 a rdf:Statement ;
up:attribution _:756155 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005536 .
_:756194 a rdf:Statement ;
up:attribution _:756156 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0047936 .
_:756195 a rdf:Statement ;
up:attribution _:756157 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0070401 .
_:756196 a rdf:Statement ;
up:attribution _:756158 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0070403 .
_:756197 a rdf:Statement ;
up:attribution _:756159 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008270 .
_:756198 a rdf:Statement ;
up:attribution _:756160 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019595 .
_:756199 a rdf:Statement ;
up:source unirule:MF_02127 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:756200 a rdf:Statement ;
up:attribution _:756161 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:756201 a rdf:Statement ;
up:source unirule:MF_02127 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:756202 a rdf:Statement ;
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rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:756203 a rdf:Statement ;
up:source unirule:MF_02127 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:756204 a rdf:Statement ;
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rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:756205 a rdf:Statement ;
up:source unirule:MF_02127 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:756206 a rdf:Statement ;
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rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:756207 a rdf:Statement ;
up:source unirule:MF_02127 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:756208 a rdf:Statement ;
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rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:756209 a rdf:Statement ;
up:source unirule:MF_02127 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
_:756210 a rdf:Statement ;
up:attribution _:756166 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
_:756211 a rdf:Statement ;
up:source unirule:MF_02127 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation50 .
_:756212 a rdf:Statement ;
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rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation50 .
_:756213 a rdf:Statement ;
up:source unirule:MF_02127 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation56 .
_:756214 a rdf:Statement ;
up:attribution _:756168 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation56 .
_:756215 a rdf:Statement ;
up:source unirule:MF_02127 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation62 .
_:756216 a rdf:Statement ;
up:attribution _:756169 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation62 .
_:756217 a rdf:Statement ;
up:source unirule:MF_02127 ;
rdf:subject ?pfs68 ;
rdf:predicate up:annotation ;
rdf:object ?annotation69 .
_:756218 a rdf:Statement ;
up:attribution _:756170 ;
rdf:subject ?pfs68 ;
rdf:predicate up:annotation ;
rdf:object ?annotation69 .
_:756219 a rdf:Statement ;
up:source unirule:MF_02127 ;
rdf:subject ?pfs75 ;
rdf:predicate up:annotation ;
rdf:object ?annotation76 .
_:756220 a rdf:Statement ;
up:attribution _:756171 ;
rdf:subject ?pfs75 ;
rdf:predicate up:annotation ;
rdf:object ?annotation76 .
_:756221 a rdf:Statement ;
up:source unirule:MF_02127 ;
rdf:subject ?pfs82 ;
rdf:predicate up:annotation ;
rdf:object ?annotation83 .
_:756222 a rdf:Statement ;
up:attribution _:756172 ;
rdf:subject ?pfs82 ;
rdf:predicate up:annotation ;
rdf:object ?annotation83 .
_:756223 a rdf:Statement ;
up:source unirule:MF_02127 ;
rdf:subject ?pfs89 ;
rdf:predicate up:annotation ;
rdf:object ?annotation90 .
_:756224 a rdf:Statement ;
up:attribution _:756173 ;
rdf:subject ?pfs89 ;
rdf:predicate up:annotation ;
rdf:object ?annotation90 .
_:756225 a rdf:Statement ;
up:source unirule:MF_02127 ;
rdf:subject ?pfs97 ;
rdf:predicate up:annotation ;
rdf:object ?annotation98 .
_:756226 a rdf:Statement ;
up:attribution _:756174 ;
rdf:subject ?pfs97 ;
rdf:predicate up:annotation ;
rdf:object ?annotation98 .
_:756227 a rdf:Statement ;
up:source unirule:MF_02127 ;
rdf:subject ?pfs105 ;
rdf:predicate up:annotation ;
rdf:object ?annotation106 .
_:756228 a rdf:Statement ;
up:attribution _:756175 ;
rdf:subject ?pfs105 ;
rdf:predicate up:annotation ;
rdf:object ?annotation106 .
_:756229 a rdf:Statement ;
up:source unirule:MF_02127 ;
rdf:subject ?pfs113 ;
rdf:predicate up:annotation ;
rdf:object ?annotation114 .
_:756230 a rdf:Statement ;
up:attribution _:756176 ;
rdf:subject ?pfs113 ;
rdf:predicate up:annotation ;
rdf:object ?annotation114 .
_:756231 a rdf:Statement ;
up:source unirule:MF_02127 ;
rdf:subject ?pfs121 ;
rdf:predicate up:annotation ;
rdf:object ?annotation122 .
_:756232 a rdf:Statement ;
up:attribution _:756177 ;
rdf:subject ?pfs121 ;
rdf:predicate up:annotation ;
rdf:object ?annotation122 .
_:756233 a rdf:Statement ;
up:source unirule:MF_02127 ;
rdf:subject ?pfs129 ;
rdf:predicate up:annotation ;
rdf:object ?annotation130 .
_:756234 a rdf:Statement ;
up:attribution _:756178 ;
rdf:subject ?pfs129 ;
rdf:predicate up:annotation ;
rdf:object ?annotation130 .
_:756235 a rdf:Statement ;
up:source unirule:MF_02127 ;
rdf:subject ?pfs137 ;
rdf:predicate up:annotation ;
rdf:object ?annotation138 .
_:756236 a rdf:Statement ;
up:attribution _:756179 ;
rdf:subject ?pfs137 ;
rdf:predicate up:annotation ;
rdf:object ?annotation138 .
_:756237 a rdf:Statement ;
up:source unirule:MF_02127 ;
rdf:subject ?pfs144 ;
rdf:predicate up:annotation ;
rdf:object ?annotation145 .
_:756238 a rdf:Statement ;
up:attribution _:756180 ;
rdf:subject ?pfs144 ;
rdf:predicate up:annotation ;
rdf:object ?annotation145 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_02127
#Rule MF_02127 Created by:? on:2011-11-21 Modified by:Edouard de Castro on:2024-09-02
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_02127 .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(URI(CONCAT(STR(?this), '#MF_02127a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_02127a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_02127a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_02127a6')) AS ?annotation6) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch155 faldo:location ?templateMotifSequenceMatchRegionO93715156 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO93715158 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO93715MF_02127151 .
?templateMotifSequenceMatchRegionO93715156 faldo:begin ?templateMotifSequenceMatchBeginO93715157 .
?templateMotifSequenceMatchBeginO93715157 faldo:position ?templateMotifSequenceMatchBeginPositionO93715152 ;
faldo:reference isoform:O93715-1 .
?templateMotifSequenceProfileAlignmentOperationO93715158 edam:has_input signature:MF_02127 ;
rdf:type edam:operation_0300 .
?targetMotifMatch159 faldo:location ?targetMotifMatchRegionMatch160 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02127162 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO93715MF_02127153 .
?targetMotifMatchRegionMatch160 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02127161 .
?targetMotifMatchRegionMatchBeginMF_02127161 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02127154 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02127162 edam:has_input signature:MF_02127 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFT_2) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO93715MF_02127151, 1, (STRLEN(?templateMotifCigarO93715MF_02127151) - STRLEN(REPLACE(?templateMotifCigarO93715MF_02127151, CONCAT('^(?:-*[^-]){', STR(((211 - ?templateMotifSequenceMatchBeginPositionO93715152) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1163) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO93715MF_02127153, 1, (STRLEN(?targetMotifMatchCigarO93715MF_02127153) - STRLEN(REPLACE(?targetMotifMatchCigarO93715MF_02127153, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1163), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO93715MF_02127153, 1, (STRLEN(?targetMotifMatchCigarO93715MF_02127153) - STRLEN(REPLACE(?targetMotifMatchCigarO93715MF_02127153, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1163), '}'), '')))), '[^-]', ''))) AS ?step2164) .
BIND(((?step2164 + ?targetMotifMatchRegionMatchBeginPositionMF_02127154) - 1) AS ?thisPositionOn16) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO93715MF_02127151, 1, (STRLEN(?templateMotifCigarO93715MF_02127151) - STRLEN(REPLACE(?templateMotifCigarO93715MF_02127151, CONCAT('^(?:-*[^-]){', STR(((213 - ?templateMotifSequenceMatchBeginPositionO93715152) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1165) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO93715MF_02127153, 1, (STRLEN(?targetMotifMatchCigarO93715MF_02127153) - STRLEN(REPLACE(?targetMotifMatchCigarO93715MF_02127153, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1165), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO93715MF_02127153, 1, (STRLEN(?targetMotifMatchCigarO93715MF_02127153) - STRLEN(REPLACE(?targetMotifMatchCigarO93715MF_02127153, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1165), '}'), '')))), '[^-]', ''))) AS ?step2166) .
BIND(((?step2166 + ?targetMotifMatchRegionMatchBeginPositionMF_02127154) - 1) AS ?thisPositionOn17) .
BIND(?this AS ?pfs1t167) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb13) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse14) .
FILTER (REGEX('N[ARNDCQEGHILKMFPSTWYVBZJUOX][RH]', SUBSTR(?thisSequenceValue, ?thisPositionOn16, (?thisPositionOn17 - ?thisPositionOn16)))) .
BIND(URI(CONCAT(STR(?this), '#MF_02127a12')) AS ?annotation12) .
BIND(?this AS ?pfs11) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch172 faldo:location ?templateMotifSequenceMatchRegionO93715173 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO93715175 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO93715MF_02127168 .
?templateMotifSequenceMatchRegionO93715173 faldo:begin ?templateMotifSequenceMatchBeginO93715174 .
?templateMotifSequenceMatchBeginO93715174 faldo:position ?templateMotifSequenceMatchBeginPositionO93715169 ;
faldo:reference isoform:O93715-1 .
?templateMotifSequenceProfileAlignmentOperationO93715175 edam:has_input signature:MF_02127 ;
rdf:type edam:operation_0300 .
?targetMotifMatch176 faldo:location ?targetMotifMatchRegionMatch177 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02127179 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO93715MF_02127170 .
?targetMotifMatchRegionMatch177 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02127178 .
?targetMotifMatchRegionMatchBeginMF_02127178 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02127171 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02127179 edam:has_input signature:MF_02127 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO93715MF_02127168, 1, (STRLEN(?templateMotifCigarO93715MF_02127168) - STRLEN(REPLACE(?templateMotifCigarO93715MF_02127168, CONCAT('^(?:-*[^-]){', STR(((39 - ?templateMotifSequenceMatchBeginPositionO93715169) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1180) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO93715MF_02127170, 1, (STRLEN(?targetMotifMatchCigarO93715MF_02127170) - STRLEN(REPLACE(?targetMotifMatchCigarO93715MF_02127170, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1180), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO93715MF_02127170, 1, (STRLEN(?targetMotifMatchCigarO93715MF_02127170) - STRLEN(REPLACE(?targetMotifMatchCigarO93715MF_02127170, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1180), '}'), '')))), '[^-]', ''))) AS ?step2181) .
BIND(((?step2181 + ?targetMotifMatchRegionMatchBeginPositionMF_02127171) - 1) AS ?thisPositionOn23) .
BIND(?thisPositionOn23 AS ?thisPositionOn24) .
BIND(?this AS ?pfs2t182) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb20) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse21) .
FILTER (REGEX('[CD]', SUBSTR(?thisSequenceValue, ?thisPositionOn23, 1))) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO93715MF_02127168, 1, (STRLEN(?templateMotifCigarO93715MF_02127168) - STRLEN(REPLACE(?templateMotifCigarO93715MF_02127168, CONCAT('^(?:-*[^-]){', STR(((66 - ?templateMotifSequenceMatchBeginPositionO93715169) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1183) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO93715MF_02127170, 1, (STRLEN(?targetMotifMatchCigarO93715MF_02127170) - STRLEN(REPLACE(?targetMotifMatchCigarO93715MF_02127170, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1183), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO93715MF_02127170, 1, (STRLEN(?targetMotifMatchCigarO93715MF_02127170) - STRLEN(REPLACE(?targetMotifMatchCigarO93715MF_02127170, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1183), '}'), '')))), '[^-]', ''))) AS ?step2184) .
BIND(((?step2184 + ?targetMotifMatchRegionMatchBeginPositionMF_02127171) - 1) AS ?thisPositionOn29) .
BIND(?thisPositionOn29 AS ?thisPositionOn30) .
BIND(?this AS ?pfs2t185) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb26) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse27) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn29, 1) = 'H')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO93715MF_02127168, 1, (STRLEN(?templateMotifCigarO93715MF_02127168) - STRLEN(REPLACE(?templateMotifCigarO93715MF_02127168, CONCAT('^(?:-*[^-]){', STR(((67 - ?templateMotifSequenceMatchBeginPositionO93715169) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1186) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO93715MF_02127170, 1, (STRLEN(?targetMotifMatchCigarO93715MF_02127170) - STRLEN(REPLACE(?targetMotifMatchCigarO93715MF_02127170, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1186), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO93715MF_02127170, 1, (STRLEN(?targetMotifMatchCigarO93715MF_02127170) - STRLEN(REPLACE(?targetMotifMatchCigarO93715MF_02127170, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1186), '}'), '')))), '[^-]', ''))) AS ?step2187) .
BIND(((?step2187 + ?targetMotifMatchRegionMatchBeginPositionMF_02127171) - 1) AS ?thisPositionOn35) .
BIND(?thisPositionOn35 AS ?thisPositionOn36) .
BIND(?this AS ?pfs2t188) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfsb32) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfse33) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn35, 1) = 'E')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO93715MF_02127168, 1, (STRLEN(?templateMotifCigarO93715MF_02127168) - STRLEN(REPLACE(?templateMotifCigarO93715MF_02127168, CONCAT('^(?:-*[^-]){', STR(((150 - ?templateMotifSequenceMatchBeginPositionO93715169) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1189) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO93715MF_02127170, 1, (STRLEN(?targetMotifMatchCigarO93715MF_02127170) - STRLEN(REPLACE(?targetMotifMatchCigarO93715MF_02127170, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1189), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO93715MF_02127170, 1, (STRLEN(?targetMotifMatchCigarO93715MF_02127170) - STRLEN(REPLACE(?targetMotifMatchCigarO93715MF_02127170, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1189), '}'), '')))), '[^-]', ''))) AS ?step2190) .
BIND(((?step2190 + ?targetMotifMatchRegionMatchBeginPositionMF_02127171) - 1) AS ?thisPositionOn41) .
BIND(?thisPositionOn41 AS ?thisPositionOn42) .
BIND(?this AS ?pfs2t191) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfsb38) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfse39) .
FILTER (REGEX('[QE]', SUBSTR(?thisSequenceValue, ?thisPositionOn41, 1))) .
BIND(?this AS ?pfs18) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch196 faldo:location ?templateMotifSequenceMatchRegionO93715197 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO93715199 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO93715MF_02127192 .
?templateMotifSequenceMatchRegionO93715197 faldo:begin ?templateMotifSequenceMatchBeginO93715198 .
?templateMotifSequenceMatchBeginO93715198 faldo:position ?templateMotifSequenceMatchBeginPositionO93715193 ;
faldo:reference isoform:O93715-1 .
?templateMotifSequenceProfileAlignmentOperationO93715199 edam:has_input signature:MF_02127 ;
rdf:type edam:operation_0300 .
?targetMotifMatch200 faldo:location ?targetMotifMatchRegionMatch201 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02127203 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO93715MF_02127194 .
?targetMotifMatchRegionMatch201 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02127202 .
?targetMotifMatchRegionMatchBeginMF_02127202 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02127195 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02127203 edam:has_input signature:MF_02127 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_2) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO93715MF_02127192, 1, (STRLEN(?templateMotifCigarO93715MF_02127192) - STRLEN(REPLACE(?templateMotifCigarO93715MF_02127192, CONCAT('^(?:-*[^-]){', STR(((93 - ?templateMotifSequenceMatchBeginPositionO93715193) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1204) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO93715MF_02127194, 1, (STRLEN(?targetMotifMatchCigarO93715MF_02127194) - STRLEN(REPLACE(?targetMotifMatchCigarO93715MF_02127194, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1204), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO93715MF_02127194, 1, (STRLEN(?targetMotifMatchCigarO93715MF_02127194) - STRLEN(REPLACE(?targetMotifMatchCigarO93715MF_02127194, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1204), '}'), '')))), '[^-]', ''))) AS ?step2205) .
BIND(((?step2205 + ?targetMotifMatchRegionMatchBeginPositionMF_02127195) - 1) AS ?thisPositionOn48) .
BIND(?thisPositionOn48 AS ?thisPositionOn49) .
BIND(?this AS ?pfs3t206) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfsb45) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfse46) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn48, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO93715MF_02127192, 1, (STRLEN(?templateMotifCigarO93715MF_02127192) - STRLEN(REPLACE(?templateMotifCigarO93715MF_02127192, CONCAT('^(?:-*[^-]){', STR(((96 - ?templateMotifSequenceMatchBeginPositionO93715193) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1207) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO93715MF_02127194, 1, (STRLEN(?targetMotifMatchCigarO93715MF_02127194) - STRLEN(REPLACE(?targetMotifMatchCigarO93715MF_02127194, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1207), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO93715MF_02127194, 1, (STRLEN(?targetMotifMatchCigarO93715MF_02127194) - STRLEN(REPLACE(?targetMotifMatchCigarO93715MF_02127194, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1207), '}'), '')))), '[^-]', ''))) AS ?step2208) .
BIND(((?step2208 + ?targetMotifMatchRegionMatchBeginPositionMF_02127195) - 1) AS ?thisPositionOn54) .
BIND(?thisPositionOn54 AS ?thisPositionOn55) .
BIND(?this AS ?pfs3t209) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfsb51) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfse52) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn54, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO93715MF_02127192, 1, (STRLEN(?templateMotifCigarO93715MF_02127192) - STRLEN(REPLACE(?templateMotifCigarO93715MF_02127192, CONCAT('^(?:-*[^-]){', STR(((99 - ?templateMotifSequenceMatchBeginPositionO93715193) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1210) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO93715MF_02127194, 1, (STRLEN(?targetMotifMatchCigarO93715MF_02127194) - STRLEN(REPLACE(?targetMotifMatchCigarO93715MF_02127194, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1210), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO93715MF_02127194, 1, (STRLEN(?targetMotifMatchCigarO93715MF_02127194) - STRLEN(REPLACE(?targetMotifMatchCigarO93715MF_02127194, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1210), '}'), '')))), '[^-]', ''))) AS ?step2211) .
BIND(((?step2211 + ?targetMotifMatchRegionMatchBeginPositionMF_02127195) - 1) AS ?thisPositionOn60) .
BIND(?thisPositionOn60 AS ?thisPositionOn61) .
BIND(?this AS ?pfs3t212) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfsb57) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfse58) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn60, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO93715MF_02127192, 1, (STRLEN(?templateMotifCigarO93715MF_02127192) - STRLEN(REPLACE(?templateMotifCigarO93715MF_02127192, CONCAT('^(?:-*[^-]){', STR(((107 - ?templateMotifSequenceMatchBeginPositionO93715193) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1213) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO93715MF_02127194, 1, (STRLEN(?targetMotifMatchCigarO93715MF_02127194) - STRLEN(REPLACE(?targetMotifMatchCigarO93715MF_02127194, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1213), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO93715MF_02127194, 1, (STRLEN(?targetMotifMatchCigarO93715MF_02127194) - STRLEN(REPLACE(?targetMotifMatchCigarO93715MF_02127194, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1213), '}'), '')))), '[^-]', ''))) AS ?step2214) .
BIND(((?step2214 + ?targetMotifMatchRegionMatchBeginPositionMF_02127195) - 1) AS ?thisPositionOn66) .
BIND(?thisPositionOn66 AS ?thisPositionOn67) .
BIND(?this AS ?pfs3t215) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfsb63) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfse64) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn66, 1) = 'C')) .
BIND(?this AS ?pfs43) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch220 faldo:location ?templateMotifSequenceMatchRegionO93715221 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO93715223 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO93715MF_02127216 .
?templateMotifSequenceMatchRegionO93715221 faldo:begin ?templateMotifSequenceMatchBeginO93715222 .
?templateMotifSequenceMatchBeginO93715222 faldo:position ?templateMotifSequenceMatchBeginPositionO93715217 ;
faldo:reference isoform:O93715-1 .
?templateMotifSequenceProfileAlignmentOperationO93715223 edam:has_input signature:MF_02127 ;
rdf:type edam:operation_0300 .
?targetMotifMatch224 faldo:location ?targetMotifMatchRegionMatch225 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02127227 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO93715MF_02127218 .
?targetMotifMatchRegionMatch225 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02127226 .
?targetMotifMatchRegionMatchBeginMF_02127226 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02127219 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02127227 edam:has_input signature:MF_02127 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO93715MF_02127216, 1, (STRLEN(?templateMotifCigarO93715MF_02127216) - STRLEN(REPLACE(?templateMotifCigarO93715MF_02127216, CONCAT('^(?:-*[^-]){', STR(((189 - ?templateMotifSequenceMatchBeginPositionO93715217) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1228) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO93715MF_02127218, 1, (STRLEN(?targetMotifMatchCigarO93715MF_02127218) - STRLEN(REPLACE(?targetMotifMatchCigarO93715MF_02127218, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1228), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO93715MF_02127218, 1, (STRLEN(?targetMotifMatchCigarO93715MF_02127218) - STRLEN(REPLACE(?targetMotifMatchCigarO93715MF_02127218, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1228), '}'), '')))), '[^-]', ''))) AS ?step2229) .
BIND(((?step2229 + ?targetMotifMatchRegionMatchBeginPositionMF_02127219) - 1) AS ?thisPositionOn73) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO93715MF_02127216, 1, (STRLEN(?templateMotifCigarO93715MF_02127216) - STRLEN(REPLACE(?templateMotifCigarO93715MF_02127216, CONCAT('^(?:-*[^-]){', STR(((192 - ?templateMotifSequenceMatchBeginPositionO93715217) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1230) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO93715MF_02127218, 1, (STRLEN(?targetMotifMatchCigarO93715MF_02127218) - STRLEN(REPLACE(?targetMotifMatchCigarO93715MF_02127218, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1230), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO93715MF_02127218, 1, (STRLEN(?targetMotifMatchCigarO93715MF_02127218) - STRLEN(REPLACE(?targetMotifMatchCigarO93715MF_02127218, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1230), '}'), '')))), '[^-]', ''))) AS ?step2231) .
BIND(((?step2231 + ?targetMotifMatchRegionMatchBeginPositionMF_02127219) - 1) AS ?thisPositionOn74) .
BIND(?this AS ?pfs4t232) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfsb70) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn74))) AS ?pfse71) .
FILTER (REGEX('[TNSA][ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX][ILV]', SUBSTR(?thisSequenceValue, ?thisPositionOn73, (?thisPositionOn74 - ?thisPositionOn73)))) .
BIND(URI(CONCAT(STR(?this), '#MF_02127a69')) AS ?annotation69) .
BIND(?this AS ?pfs68) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch237 faldo:location ?templateMotifSequenceMatchRegionO93715238 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO93715240 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO93715MF_02127233 .
?templateMotifSequenceMatchRegionO93715238 faldo:begin ?templateMotifSequenceMatchBeginO93715239 .
?templateMotifSequenceMatchBeginO93715239 faldo:position ?templateMotifSequenceMatchBeginPositionO93715234 ;
faldo:reference isoform:O93715-1 .
?templateMotifSequenceProfileAlignmentOperationO93715240 edam:has_input signature:MF_02127 ;
rdf:type edam:operation_0300 .
?targetMotifMatch241 faldo:location ?targetMotifMatchRegionMatch242 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02127244 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO93715MF_02127235 .
?targetMotifMatchRegionMatch242 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02127243 .
?targetMotifMatchRegionMatchBeginMF_02127243 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02127236 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02127244 edam:has_input signature:MF_02127 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO93715MF_02127233, 1, (STRLEN(?templateMotifCigarO93715MF_02127233) - STRLEN(REPLACE(?templateMotifCigarO93715MF_02127233, CONCAT('^(?:-*[^-]){', STR(((277 - ?templateMotifSequenceMatchBeginPositionO93715234) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1245) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO93715MF_02127235, 1, (STRLEN(?targetMotifMatchCigarO93715MF_02127235) - STRLEN(REPLACE(?targetMotifMatchCigarO93715MF_02127235, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1245), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO93715MF_02127235, 1, (STRLEN(?targetMotifMatchCigarO93715MF_02127235) - STRLEN(REPLACE(?targetMotifMatchCigarO93715MF_02127235, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1245), '}'), '')))), '[^-]', ''))) AS ?step2246) .
BIND(((?step2246 + ?targetMotifMatchRegionMatchBeginPositionMF_02127236) - 1) AS ?thisPositionOn80) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO93715MF_02127233, 1, (STRLEN(?templateMotifCigarO93715MF_02127233) - STRLEN(REPLACE(?templateMotifCigarO93715MF_02127233, CONCAT('^(?:-*[^-]){', STR(((279 - ?templateMotifSequenceMatchBeginPositionO93715234) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1247) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO93715MF_02127235, 1, (STRLEN(?targetMotifMatchCigarO93715MF_02127235) - STRLEN(REPLACE(?targetMotifMatchCigarO93715MF_02127235, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1247), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO93715MF_02127235, 1, (STRLEN(?targetMotifMatchCigarO93715MF_02127235) - STRLEN(REPLACE(?targetMotifMatchCigarO93715MF_02127235, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1247), '}'), '')))), '[^-]', ''))) AS ?step2248) .
BIND(((?step2248 + ?targetMotifMatchRegionMatchBeginPositionMF_02127236) - 1) AS ?thisPositionOn81) .
BIND(?this AS ?pfs4t249) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn80))) AS ?pfsb77) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn81))) AS ?pfse78) .
FILTER (REGEX('[FL][ARNDCQEGHILKMFPSTWYVBZJUOX][FVILT]', SUBSTR(?thisSequenceValue, ?thisPositionOn80, (?thisPositionOn81 - ?thisPositionOn80)))) .
BIND(URI(CONCAT(STR(?this), '#MF_02127a76')) AS ?annotation76) .
BIND(?this AS ?pfs75) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch254 faldo:location ?templateMotifSequenceMatchRegionO93715255 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO93715257 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO93715MF_02127250 .
?templateMotifSequenceMatchRegionO93715255 faldo:begin ?templateMotifSequenceMatchBeginO93715256 .
?templateMotifSequenceMatchBeginO93715256 faldo:position ?templateMotifSequenceMatchBeginPositionO93715251 ;
faldo:reference isoform:O93715-1 .
?templateMotifSequenceProfileAlignmentOperationO93715257 edam:has_input signature:MF_02127 ;
rdf:type edam:operation_0300 .
?targetMotifMatch258 faldo:location ?targetMotifMatchRegionMatch259 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02127261 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO93715MF_02127252 .
?targetMotifMatchRegionMatch259 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02127260 .
?targetMotifMatchRegionMatchBeginMF_02127260 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02127253 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02127261 edam:has_input signature:MF_02127 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO93715MF_02127250, 1, (STRLEN(?templateMotifCigarO93715MF_02127250) - STRLEN(REPLACE(?templateMotifCigarO93715MF_02127250, CONCAT('^(?:-*[^-]){', STR(((305 - ?templateMotifSequenceMatchBeginPositionO93715251) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1262) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO93715MF_02127252, 1, (STRLEN(?targetMotifMatchCigarO93715MF_02127252) - STRLEN(REPLACE(?targetMotifMatchCigarO93715MF_02127252, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1262), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO93715MF_02127252, 1, (STRLEN(?targetMotifMatchCigarO93715MF_02127252) - STRLEN(REPLACE(?targetMotifMatchCigarO93715MF_02127252, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1262), '}'), '')))), '[^-]', ''))) AS ?step2263) .
BIND(((?step2263 + ?targetMotifMatchRegionMatchBeginPositionMF_02127253) - 1) AS ?thisPositionOn87) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO93715MF_02127250, 1, (STRLEN(?templateMotifCigarO93715MF_02127250) - STRLEN(REPLACE(?templateMotifCigarO93715MF_02127250, CONCAT('^(?:-*[^-]){', STR(((307 - ?templateMotifSequenceMatchBeginPositionO93715251) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1264) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO93715MF_02127252, 1, (STRLEN(?targetMotifMatchCigarO93715MF_02127252) - STRLEN(REPLACE(?targetMotifMatchCigarO93715MF_02127252, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1264), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO93715MF_02127252, 1, (STRLEN(?targetMotifMatchCigarO93715MF_02127252) - STRLEN(REPLACE(?targetMotifMatchCigarO93715MF_02127252, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1264), '}'), '')))), '[^-]', ''))) AS ?step2265) .
BIND(((?step2265 + ?targetMotifMatchRegionMatchBeginPositionMF_02127253) - 1) AS ?thisPositionOn88) .
BIND(?this AS ?pfs4t266) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn87))) AS ?pfsb84) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn88))) AS ?pfse85) .
FILTER (REGEX('[LSTAV][ARNDCQEGHILKMFPSTWYVBZJUOX][ND]', SUBSTR(?thisSequenceValue, ?thisPositionOn87, (?thisPositionOn88 - ?thisPositionOn87)))) .
BIND(URI(CONCAT(STR(?this), '#MF_02127a83')) AS ?annotation83) .
BIND(?this AS ?pfs82) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch271 faldo:location ?templateMotifSequenceMatchRegionO93715272 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO93715274 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO93715MF_02127267 .
?templateMotifSequenceMatchRegionO93715272 faldo:begin ?templateMotifSequenceMatchBeginO93715273 .
?templateMotifSequenceMatchBeginO93715273 faldo:position ?templateMotifSequenceMatchBeginPositionO93715268 ;
faldo:reference isoform:O93715-1 .
?templateMotifSequenceProfileAlignmentOperationO93715274 edam:has_input signature:MF_02127 ;
rdf:type edam:operation_0300 .
?targetMotifMatch275 faldo:location ?targetMotifMatchRegionMatch276 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02127278 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO93715MF_02127269 .
?targetMotifMatchRegionMatch276 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02127277 .
?targetMotifMatchRegionMatchBeginMF_02127277 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02127270 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02127278 edam:has_input signature:MF_02127 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO93715MF_02127267, 1, (STRLEN(?templateMotifCigarO93715MF_02127267) - STRLEN(REPLACE(?templateMotifCigarO93715MF_02127267, CONCAT('^(?:-*[^-]){', STR(((41 - ?templateMotifSequenceMatchBeginPositionO93715268) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1279) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO93715MF_02127269, 1, (STRLEN(?targetMotifMatchCigarO93715MF_02127269) - STRLEN(REPLACE(?targetMotifMatchCigarO93715MF_02127269, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1279), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO93715MF_02127269, 1, (STRLEN(?targetMotifMatchCigarO93715MF_02127269) - STRLEN(REPLACE(?targetMotifMatchCigarO93715MF_02127269, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1279), '}'), '')))), '[^-]', ''))) AS ?step2280) .
BIND(((?step2280 + ?targetMotifMatchRegionMatchBeginPositionMF_02127270) - 1) AS ?thisPositionOn95) .
BIND(?thisPositionOn95 AS ?thisPositionOn96) .
BIND(?this AS ?pfs4t281) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn95))) AS ?pfsb91) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn96))) AS ?pfse92) .
FILTER (REGEX('[TS]', SUBSTR(?thisSequenceValue, ?thisPositionOn95, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_02127a90')) AS ?annotation90) .
BIND(?this AS ?pfs89) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch286 faldo:location ?templateMotifSequenceMatchRegionO93715287 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO93715289 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO93715MF_02127282 .
?templateMotifSequenceMatchRegionO93715287 faldo:begin ?templateMotifSequenceMatchBeginO93715288 .
?templateMotifSequenceMatchBeginO93715288 faldo:position ?templateMotifSequenceMatchBeginPositionO93715283 ;
faldo:reference isoform:O93715-1 .
?templateMotifSequenceProfileAlignmentOperationO93715289 edam:has_input signature:MF_02127 ;
rdf:type edam:operation_0300 .
?targetMotifMatch290 faldo:location ?targetMotifMatchRegionMatch291 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02127293 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO93715MF_02127284 .
?targetMotifMatchRegionMatch291 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02127292 .
?targetMotifMatchRegionMatchBeginMF_02127292 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02127285 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02127293 edam:has_input signature:MF_02127 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO93715MF_02127282, 1, (STRLEN(?templateMotifCigarO93715MF_02127282) - STRLEN(REPLACE(?templateMotifCigarO93715MF_02127282, CONCAT('^(?:-*[^-]){', STR(((89 - ?templateMotifSequenceMatchBeginPositionO93715283) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1294) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO93715MF_02127284, 1, (STRLEN(?targetMotifMatchCigarO93715MF_02127284) - STRLEN(REPLACE(?targetMotifMatchCigarO93715MF_02127284, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1294), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO93715MF_02127284, 1, (STRLEN(?targetMotifMatchCigarO93715MF_02127284) - STRLEN(REPLACE(?targetMotifMatchCigarO93715MF_02127284, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1294), '}'), '')))), '[^-]', ''))) AS ?step2295) .
BIND(((?step2295 + ?targetMotifMatchRegionMatchBeginPositionMF_02127285) - 1) AS ?thisPositionOn103) .
BIND(?thisPositionOn103 AS ?thisPositionOn104) .
BIND(?this AS ?pfs4t296) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn103))) AS ?pfsb99) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn104))) AS ?pfse100) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn103, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_02127a98')) AS ?annotation98) .
BIND(?this AS ?pfs97) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch301 faldo:location ?templateMotifSequenceMatchRegionO93715302 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO93715304 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO93715MF_02127297 .
?templateMotifSequenceMatchRegionO93715302 faldo:begin ?templateMotifSequenceMatchBeginO93715303 .
?templateMotifSequenceMatchBeginO93715303 faldo:position ?templateMotifSequenceMatchBeginPositionO93715298 ;
faldo:reference isoform:O93715-1 .
?templateMotifSequenceProfileAlignmentOperationO93715304 edam:has_input signature:MF_02127 ;
rdf:type edam:operation_0300 .
?targetMotifMatch305 faldo:location ?targetMotifMatchRegionMatch306 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02127308 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO93715MF_02127299 .
?targetMotifMatchRegionMatch306 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02127307 .
?targetMotifMatchRegionMatchBeginMF_02127307 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02127300 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02127308 edam:has_input signature:MF_02127 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO93715MF_02127297, 1, (STRLEN(?templateMotifCigarO93715MF_02127297) - STRLEN(REPLACE(?templateMotifCigarO93715MF_02127297, CONCAT('^(?:-*[^-]){', STR(((114 - ?templateMotifSequenceMatchBeginPositionO93715298) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1309) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO93715MF_02127299, 1, (STRLEN(?targetMotifMatchCigarO93715MF_02127299) - STRLEN(REPLACE(?targetMotifMatchCigarO93715MF_02127299, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1309), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO93715MF_02127299, 1, (STRLEN(?targetMotifMatchCigarO93715MF_02127299) - STRLEN(REPLACE(?targetMotifMatchCigarO93715MF_02127299, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1309), '}'), '')))), '[^-]', ''))) AS ?step2310) .
BIND(((?step2310 + ?targetMotifMatchRegionMatchBeginPositionMF_02127300) - 1) AS ?thisPositionOn111) .
BIND(?thisPositionOn111 AS ?thisPositionOn112) .
BIND(?this AS ?pfs4t311) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn111))) AS ?pfsb107) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn112))) AS ?pfse108) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn111, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_02127a106')) AS ?annotation106) .
BIND(?this AS ?pfs105) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch316 faldo:location ?templateMotifSequenceMatchRegionO93715317 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO93715319 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO93715MF_02127312 .
?templateMotifSequenceMatchRegionO93715317 faldo:begin ?templateMotifSequenceMatchBeginO93715318 .
?templateMotifSequenceMatchBeginO93715318 faldo:position ?templateMotifSequenceMatchBeginPositionO93715313 ;
faldo:reference isoform:O93715-1 .
?templateMotifSequenceProfileAlignmentOperationO93715319 edam:has_input signature:MF_02127 ;
rdf:type edam:operation_0300 .
?targetMotifMatch320 faldo:location ?targetMotifMatchRegionMatch321 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02127323 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO93715MF_02127314 .
?targetMotifMatchRegionMatch321 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02127322 .
?targetMotifMatchRegionMatchBeginMF_02127322 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02127315 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02127323 edam:has_input signature:MF_02127 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO93715MF_02127312, 1, (STRLEN(?templateMotifCigarO93715MF_02127312) - STRLEN(REPLACE(?templateMotifCigarO93715MF_02127312, CONCAT('^(?:-*[^-]){', STR(((150 - ?templateMotifSequenceMatchBeginPositionO93715313) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1324) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO93715MF_02127314, 1, (STRLEN(?targetMotifMatchCigarO93715MF_02127314) - STRLEN(REPLACE(?targetMotifMatchCigarO93715MF_02127314, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1324), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO93715MF_02127314, 1, (STRLEN(?targetMotifMatchCigarO93715MF_02127314) - STRLEN(REPLACE(?targetMotifMatchCigarO93715MF_02127314, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1324), '}'), '')))), '[^-]', ''))) AS ?step2325) .
BIND(((?step2325 + ?targetMotifMatchRegionMatchBeginPositionMF_02127315) - 1) AS ?thisPositionOn119) .
BIND(?thisPositionOn119 AS ?thisPositionOn120) .
BIND(?this AS ?pfs4t326) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn119))) AS ?pfsb115) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn120))) AS ?pfse116) .
FILTER (REGEX('[QE]', SUBSTR(?thisSequenceValue, ?thisPositionOn119, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_02127a114')) AS ?annotation114) .
BIND(?this AS ?pfs113) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch331 faldo:location ?templateMotifSequenceMatchRegionO93715332 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO93715334 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO93715MF_02127327 .
?templateMotifSequenceMatchRegionO93715332 faldo:begin ?templateMotifSequenceMatchBeginO93715333 .
?templateMotifSequenceMatchBeginO93715333 faldo:position ?templateMotifSequenceMatchBeginPositionO93715328 ;
faldo:reference isoform:O93715-1 .
?templateMotifSequenceProfileAlignmentOperationO93715334 edam:has_input signature:MF_02127 ;
rdf:type edam:operation_0300 .
?targetMotifMatch335 faldo:location ?targetMotifMatchRegionMatch336 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02127338 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO93715MF_02127329 .
?targetMotifMatchRegionMatch336 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02127337 .
?targetMotifMatchRegionMatchBeginMF_02127337 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02127330 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02127338 edam:has_input signature:MF_02127 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO93715MF_02127327, 1, (STRLEN(?templateMotifCigarO93715MF_02127327) - STRLEN(REPLACE(?templateMotifCigarO93715MF_02127327, CONCAT('^(?:-*[^-]){', STR(((154 - ?templateMotifSequenceMatchBeginPositionO93715328) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1339) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO93715MF_02127329, 1, (STRLEN(?targetMotifMatchCigarO93715MF_02127329) - STRLEN(REPLACE(?targetMotifMatchCigarO93715MF_02127329, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1339), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO93715MF_02127329, 1, (STRLEN(?targetMotifMatchCigarO93715MF_02127329) - STRLEN(REPLACE(?targetMotifMatchCigarO93715MF_02127329, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1339), '}'), '')))), '[^-]', ''))) AS ?step2340) .
BIND(((?step2340 + ?targetMotifMatchRegionMatchBeginPositionMF_02127330) - 1) AS ?thisPositionOn127) .
BIND(?thisPositionOn127 AS ?thisPositionOn128) .
BIND(?this AS ?pfs4t341) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn127))) AS ?pfsb123) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn128))) AS ?pfse124) .
FILTER (REGEX('[DN]', SUBSTR(?thisSequenceValue, ?thisPositionOn127, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_02127a122')) AS ?annotation122) .
BIND(?this AS ?pfs121) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch346 faldo:location ?templateMotifSequenceMatchRegionO93715347 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO93715349 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO93715MF_02127342 .
?templateMotifSequenceMatchRegionO93715347 faldo:begin ?templateMotifSequenceMatchBeginO93715348 .
?templateMotifSequenceMatchBeginO93715348 faldo:position ?templateMotifSequenceMatchBeginPositionO93715343 ;
faldo:reference isoform:O93715-1 .
?templateMotifSequenceProfileAlignmentOperationO93715349 edam:has_input signature:MF_02127 ;
rdf:type edam:operation_0300 .
?targetMotifMatch350 faldo:location ?targetMotifMatchRegionMatch351 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02127353 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO93715MF_02127344 .
?targetMotifMatchRegionMatch351 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02127352 .
?targetMotifMatchRegionMatchBeginMF_02127352 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02127345 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02127353 edam:has_input signature:MF_02127 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO93715MF_02127342, 1, (STRLEN(?templateMotifCigarO93715MF_02127342) - STRLEN(REPLACE(?templateMotifCigarO93715MF_02127342, CONCAT('^(?:-*[^-]){', STR(((307 - ?templateMotifSequenceMatchBeginPositionO93715343) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1354) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO93715MF_02127344, 1, (STRLEN(?targetMotifMatchCigarO93715MF_02127344) - STRLEN(REPLACE(?targetMotifMatchCigarO93715MF_02127344, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1354), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO93715MF_02127344, 1, (STRLEN(?targetMotifMatchCigarO93715MF_02127344) - STRLEN(REPLACE(?targetMotifMatchCigarO93715MF_02127344, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1354), '}'), '')))), '[^-]', ''))) AS ?step2355) .
BIND(((?step2355 + ?targetMotifMatchRegionMatchBeginPositionMF_02127345) - 1) AS ?thisPositionOn135) .
BIND(?thisPositionOn135 AS ?thisPositionOn136) .
BIND(?this AS ?pfs4t356) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn135))) AS ?pfsb131) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn136))) AS ?pfse132) .
FILTER (REGEX('[ND]', SUBSTR(?thisSequenceValue, ?thisPositionOn135, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_02127a130')) AS ?annotation130) .
BIND(?this AS ?pfs129) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch361 faldo:location ?templateMotifSequenceMatchRegionO93715362 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO93715364 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO93715MF_02127357 .
?templateMotifSequenceMatchRegionO93715362 faldo:begin ?templateMotifSequenceMatchBeginO93715363 .
?templateMotifSequenceMatchBeginO93715363 faldo:position ?templateMotifSequenceMatchBeginPositionO93715358 ;
faldo:reference isoform:O93715-1 .
?templateMotifSequenceProfileAlignmentOperationO93715364 edam:has_input signature:MF_02127 ;
rdf:type edam:operation_0300 .
?targetMotifMatch365 faldo:location ?targetMotifMatchRegionMatch366 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02127368 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO93715MF_02127359 .
?targetMotifMatchRegionMatch366 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02127367 .
?targetMotifMatchRegionMatchBeginMF_02127367 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02127360 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02127368 edam:has_input signature:MF_02127 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO93715MF_02127357, 1, (STRLEN(?templateMotifCigarO93715MF_02127357) - STRLEN(REPLACE(?templateMotifCigarO93715MF_02127357, CONCAT('^(?:-*[^-]){', STR(((354 - ?templateMotifSequenceMatchBeginPositionO93715358) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1369) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO93715MF_02127359, 1, (STRLEN(?targetMotifMatchCigarO93715MF_02127359) - STRLEN(REPLACE(?targetMotifMatchCigarO93715MF_02127359, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1369), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO93715MF_02127359, 1, (STRLEN(?targetMotifMatchCigarO93715MF_02127359) - STRLEN(REPLACE(?targetMotifMatchCigarO93715MF_02127359, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1369), '}'), '')))), '[^-]', ''))) AS ?step2370) .
BIND(((?step2370 + ?targetMotifMatchRegionMatchBeginPositionMF_02127360) - 1) AS ?thisPositionOn142) .
BIND(?thisPositionOn142 AS ?thisPositionOn143) .
BIND(?this AS ?pfs4t371) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn142))) AS ?pfsb139) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn143))) AS ?pfse140) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn142, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_02127a138')) AS ?annotation138) .
BIND(?this AS ?pfs137) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch376 faldo:location ?templateMotifSequenceMatchRegionQ977U7377 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ977U7379 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ977U7MF_02127372 .
?templateMotifSequenceMatchRegionQ977U7377 faldo:begin ?templateMotifSequenceMatchBeginQ977U7378 .
?templateMotifSequenceMatchBeginQ977U7378 faldo:position ?templateMotifSequenceMatchBeginPositionQ977U7373 ;
faldo:reference isoform:Q977U7-1 .
?templateMotifSequenceProfileAlignmentOperationQ977U7379 edam:has_input signature:MF_02127 ;
rdf:type edam:operation_0300 .
?targetMotifMatch380 faldo:location ?targetMotifMatchRegionMatch381 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02127383 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ977U7MF_02127374 .
?targetMotifMatchRegionMatch381 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02127382 .
?targetMotifMatchRegionMatchBeginMF_02127382 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02127375 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02127383 edam:has_input signature:MF_02127 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ977U7MF_02127372, 1, (STRLEN(?templateMotifCigarQ977U7MF_02127372) - STRLEN(REPLACE(?templateMotifCigarQ977U7MF_02127372, CONCAT('^(?:-*[^-]){', STR(((207 - ?templateMotifSequenceMatchBeginPositionQ977U7373) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1384) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ977U7MF_02127374, 1, (STRLEN(?targetMotifMatchCigarQ977U7MF_02127374) - STRLEN(REPLACE(?targetMotifMatchCigarQ977U7MF_02127374, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1384), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ977U7MF_02127374, 1, (STRLEN(?targetMotifMatchCigarQ977U7MF_02127374) - STRLEN(REPLACE(?targetMotifMatchCigarQ977U7MF_02127374, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1384), '}'), '')))), '[^-]', ''))) AS ?step2385) .
BIND(((?step2385 + ?targetMotifMatchRegionMatchBeginPositionMF_02127375) - 1) AS ?thisPositionOn149) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ977U7MF_02127372, 1, (STRLEN(?templateMotifCigarQ977U7MF_02127372) - STRLEN(REPLACE(?templateMotifCigarQ977U7MF_02127372, CONCAT('^(?:-*[^-]){', STR(((208 - ?templateMotifSequenceMatchBeginPositionQ977U7373) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1386) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ977U7MF_02127374, 1, (STRLEN(?targetMotifMatchCigarQ977U7MF_02127374) - STRLEN(REPLACE(?targetMotifMatchCigarQ977U7MF_02127374, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1386), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ977U7MF_02127374, 1, (STRLEN(?targetMotifMatchCigarQ977U7MF_02127374) - STRLEN(REPLACE(?targetMotifMatchCigarQ977U7MF_02127374, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1386), '}'), '')))), '[^-]', ''))) AS ?step2387) .
BIND(((?step2387 + ?targetMotifMatchRegionMatchBeginPositionMF_02127375) - 1) AS ?thisPositionOn150) .
BIND(?this AS ?pfs5t388) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn149))) AS ?pfsb146) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn150))) AS ?pfse147) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn149, (?thisPositionOn150 - ?thisPositionOn149)) = 'RR')) .
BIND(URI(CONCAT(STR(?this), '#MF_02127a145')) AS ?annotation145) .
BIND(?this AS ?pfs144) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:183963 .
BIND(?this AS ?case7) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag389) .
}
BIND(IF((BOUND(?tagFTGRP_1) || BOUND(?tagFTGRP_2)), ?caseWithTag389, ?UNBOUND_VARIABLE) AS ?case8) .
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:183963 .
})) .
BIND(?this AS ?case9) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag390) .
}
BIND(IF((BOUND(?tagFTGRP_1) || BOUND(?tagFTGRP_2)), ?caseWithTag390, ?UNBOUND_VARIABLE) AS ?case10) .
}
"xsd:string |
