| http://purl.uniprot.org/unirules/MF_02128#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:756965 up:source unirule:MF_02128 .
_:756966 up:source unirule:MF_02128 .
_:756967 up:source unirule:MF_02128 .
_:756968 up:source unirule:MF_02128 .
_:756969 up:source unirule:MF_02128 .
_:756970 up:source unirule:MF_02128 .
_:756971 up:source unirule:MF_02128 .
_:756972 up:source unirule:MF_02128 .
_:756973 up:source unirule:MF_02128 .
_:756974 up:source unirule:MF_02128 .
_:756975 up:source unirule:MF_02128 .
_:756976 up:source unirule:MF_02128 .
_:756977 up:source unirule:MF_02128 .
_:756978 up:source unirule:MF_02128 .
_:756979 up:source unirule:MF_02128 .
_:756980 up:source unirule:MF_02128 .
_:756981 up:source unirule:MF_02128 .
_:756982 up:source unirule:MF_02128 .
_:756983 up:source unirule:MF_02128 .
_:756984 up:source unirule:MF_02128 .
_:756985 up:source unirule:MF_02128 .
_:756986 up:source unirule:MF_02128 .
_:756987 up:source unirule:MF_02128 .
_:756988 up:source unirule:MF_02128 .
_:756989 up:source unirule:MF_02128 .
_:756990 up:source unirule:MF_02128 .
_:756991 up:source unirule:MF_02128 .
_:756992 up:source unirule:MF_02128 .
_:756993 up:source unirule:MF_02128 .
_:756994 up:source unirule:MF_02128 .
_:756995 up:source unirule:MF_02128 .
_:756996 up:source unirule:MF_02128 .
_:756997 up:source unirule:MF_02128 .
_:756998 up:source unirule:MF_02128 .
_:756999 up:source unirule:MF_02128 .
_:757000 up:source unirule:MF_02128 .
_:757001 up:source unirule:MF_02128 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation6 ,
?annotation7 ;
up:classifiedWith GO:0000287 ,
GO:0005524 ,
GO:0009030 ,
GO:0009229 ,
keyword:418 ,
keyword:460 ,
keyword:479 ,
keyword:547 ,
keyword:67 ,
keyword:784 ,
keyword:808 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.7.4.16' ;
up:fullName 'Thiamine-monophosphate kinase' ;
up:shortName 'TMP kinase' ,
'Thiamine-phosphate kinase' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'thiL' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the ATP-dependent phosphorylation of thiamine-monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1.' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 a up:Pathway_Annotation ;
rdfs:comment 'Cofactor biosynthesis; thiamine diphosphate biosynthesis; thiamine diphosphate from thiamine phosphate: step 1/1.' .
?annotation6 a up:Annotation ;
rdfs:comment 'Reaction mechanism of ThiL seems to utilize a direct, inline transfer of the gamma-phosphate of ATP to TMP rather than a phosphorylated enzyme intermediate.' .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the thiamine-monophosphate kinase family.' .
?pfs8 up:annotation ?annotation9 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
up:ligand ?ligand12 ;
rdf:type up:Binding_Site_Annotation .
?pfsb10 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?ligand12 rdfs:subClassOf chebi:30616 .
?pfs15 up:annotation ?annotation16 .
?annotation16 faldo:begin ?pfsb17 ;
faldo:end ?pfse18 ;
up:ligand ?ligand19 ;
rdf:type up:Binding_Site_Annotation .
?pfsb17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfse18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?ligand19 rdfs:subClassOf chebi:18420 .
?pfs22 up:annotation ?annotation23 .
?annotation23 faldo:begin ?pfsb24 ;
faldo:end ?pfse25 ;
up:ligand ?ligand26 ;
rdf:type up:Binding_Site_Annotation .
?pfsb24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfse25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?ligand26 rdfs:subClassOf chebi:18420 .
?pfs29 up:annotation ?annotation30 .
?annotation30 faldo:begin ?pfsb31 ;
faldo:end ?pfse32 ;
up:ligand ?ligand33 ;
rdf:type up:Binding_Site_Annotation .
?pfsb31 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfse32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?ligand33 rdfs:subClassOf chebi:18420 .
?pfs36 up:annotation ?annotation37 .
?annotation37 faldo:begin ?pfsb38 ;
faldo:end ?pfse39 ;
up:ligand ?ligand40 ;
rdf:type up:Binding_Site_Annotation .
?pfsb38 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?pfse39 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?ligand40 rdfs:subClassOf chebi:18420 .
?pfs43 up:annotation ?annotation44 .
?annotation44 faldo:begin ?pfsb45 ;
faldo:end ?pfse46 ;
up:ligand ?ligand47 ;
rdf:type up:Binding_Site_Annotation .
?pfsb45 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?pfse46 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?ligand47 rdfs:subClassOf chebi:18420 .
?pfs50 up:annotation ?annotation51 .
?annotation51 faldo:begin ?pfsb52 ;
faldo:end ?pfse53 ;
up:ligand ?ligand54 ;
rdf:type up:Binding_Site_Annotation .
?pfsb52 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
?pfse53 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?ligand54 rdfs:subClassOf chebi:18420 .
?pfs57 up:annotation ?annotation58 .
?annotation58 faldo:begin ?pfsb59 ;
faldo:end ?pfse60 ;
up:ligand ?ligand61 ;
rdf:type up:Binding_Site_Annotation .
?pfsb59 faldo:position ?thisPositionOn62 ;
rdf:type faldo:ExactPosition .
?pfse60 faldo:position ?thisPositionOn63 ;
rdf:type faldo:ExactPosition .
?ligand61 rdfs:subClassOf chebi:18420 .
?pfs64 up:annotation ?annotation65 .
?annotation65 faldo:begin ?pfsb66 ;
faldo:end ?pfse67 ;
up:ligand ?ligand68 ;
rdf:type up:Binding_Site_Annotation .
?pfsb66 faldo:position ?thisPositionOn69 ;
rdf:type faldo:ExactPosition .
?pfse67 faldo:position ?thisPositionOn70 ;
rdf:type faldo:ExactPosition .
?ligand68 rdfs:subClassOf chebi:18420 .
?pfs71 up:annotation ?annotation72 .
?annotation72 faldo:begin ?pfsb73 ;
faldo:end ?pfse74 ;
up:ligand ?ligand75 ;
rdf:type up:Binding_Site_Annotation .
?pfsb73 faldo:position ?thisPositionOn76 ;
rdf:type faldo:ExactPosition .
?pfse74 faldo:position ?thisPositionOn77 ;
rdf:type faldo:ExactPosition .
?ligand75 rdfs:subClassOf chebi:18420 .
?pfs78 up:annotation ?annotation79 .
?annotation79 faldo:begin ?pfsb80 ;
faldo:end ?pfse81 ;
up:ligand ?ligand82 ;
rdf:type up:Binding_Site_Annotation .
?pfsb80 faldo:position ?thisPositionOn83 ;
rdf:type faldo:ExactPosition .
?pfse81 faldo:position ?thisPositionOn84 ;
rdf:type faldo:ExactPosition .
?ligand82 rdfs:subClassOf chebi:18420 .
?pfs85 up:annotation ?annotation86 .
?annotation86 faldo:begin ?pfsb87 ;
faldo:end ?pfse88 ;
up:ligand ?ligand89 ;
rdf:type up:Binding_Site_Annotation .
?pfsb87 faldo:position ?thisPositionOn90 ;
rdf:type faldo:ExactPosition .
?pfse88 faldo:position ?thisPositionOn91 ;
rdf:type faldo:ExactPosition .
?ligand89 rdfs:subClassOf chebi:18420 .
?pfs92 up:annotation ?annotation93 .
?annotation93 faldo:begin ?pfsb94 ;
faldo:end ?pfse95 ;
up:ligand ?ligand96 ;
rdf:type up:Binding_Site_Annotation .
?pfsb94 faldo:position ?thisPositionOn97 ;
rdf:type faldo:ExactPosition .
?pfse95 faldo:position ?thisPositionOn98 ;
rdf:type faldo:ExactPosition .
?ligand96 rdfs:subClassOf chebi:18420 .
?pfs99 up:annotation ?annotation100 .
?annotation100 faldo:begin ?pfsb101 ;
faldo:end ?pfse102 ;
up:ligand ?ligand103 ;
rdf:type up:Binding_Site_Annotation .
?pfsb101 faldo:position ?thisPositionOn105 ;
rdf:type faldo:ExactPosition .
?pfse102 faldo:position ?thisPositionOn106 ;
rdf:type faldo:ExactPosition .
?ligand103 rdfs:subClassOf ?molecule104 .
?molecule104 rdfs:label 'substrate' .
?pfs107 up:annotation ?annotation108 .
?annotation108 faldo:begin ?pfsb109 ;
faldo:end ?pfse110 ;
up:ligand ?ligand111 ;
rdf:type up:Binding_Site_Annotation .
?pfsb109 faldo:position ?thisPositionOn112 ;
rdf:type faldo:ExactPosition .
?pfse110 faldo:position ?thisPositionOn113 ;
rdf:type faldo:ExactPosition .
?ligand111 rdfs:subClassOf chebi:30616 .
?pfs114 up:annotation ?annotation115 .
?annotation115 faldo:begin ?pfsb116 ;
faldo:end ?pfse117 ;
up:ligand ?ligand118 ;
rdf:type up:Binding_Site_Annotation .
?pfsb116 faldo:position ?thisPositionOn119 ;
rdf:type faldo:ExactPosition .
?pfse117 faldo:position ?thisPositionOn120 ;
rdf:type faldo:ExactPosition .
?ligand118 rdfs:subClassOf chebi:30616 .
?pfs121 up:annotation ?annotation122 .
?annotation122 faldo:begin ?pfsb123 ;
faldo:end ?pfse124 ;
up:ligand ?ligand125 ;
rdf:type up:Binding_Site_Annotation .
?pfsb123 faldo:position ?thisPositionOn126 ;
rdf:type faldo:ExactPosition .
?pfse124 faldo:position ?thisPositionOn127 ;
rdf:type faldo:ExactPosition .
?ligand125 rdfs:subClassOf chebi:30616 .
?pfs128 up:annotation ?annotation129 .
?annotation129 faldo:begin ?pfsb130 ;
faldo:end ?pfse131 ;
up:ligand ?ligand132 ;
rdf:type up:Binding_Site_Annotation .
?pfsb130 faldo:position ?thisPositionOn134 ;
rdf:type faldo:ExactPosition .
?pfse131 faldo:position ?thisPositionOn135 ;
rdf:type faldo:ExactPosition .
?ligand132 rdfs:subClassOf ?molecule133 .
?molecule133 rdfs:label 'substrate' .
?pfs136 up:annotation ?annotation137 .
?annotation137 faldo:begin ?pfsb138 ;
faldo:end ?pfse139 ;
up:ligand ?ligand140 ;
rdf:type up:Binding_Site_Annotation .
?pfsb138 faldo:position ?thisPositionOn142 ;
rdf:type faldo:ExactPosition .
?pfse139 faldo:position ?thisPositionOn143 ;
rdf:type faldo:ExactPosition .
?ligand140 rdfs:subClassOf ?molecule141 .
?molecule141 rdfs:label 'substrate' .
_:757002 a rdf:Statement ;
up:attribution _:756965 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:757003 a rdf:Statement ;
up:attribution _:756966 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:757004 a rdf:Statement ;
up:attribution _:756967 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:757005 a rdf:Statement ;
up:attribution _:756968 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:757006 a rdf:Statement ;
up:attribution _:756969 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:757007 a rdf:Statement ;
up:attribution _:756970 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:757008 a rdf:Statement ;
up:attribution _:756971 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:757009 a rdf:Statement ;
up:attribution _:756972 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:757010 a rdf:Statement ;
up:attribution _:756973 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:418 .
_:757011 a rdf:Statement ;
up:attribution _:756974 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:757012 a rdf:Statement ;
up:attribution _:756975 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:757013 a rdf:Statement ;
up:attribution _:756976 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:757014 a rdf:Statement ;
up:attribution _:756977 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:784 .
_:757015 a rdf:Statement ;
up:attribution _:756978 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:757016 a rdf:Statement ;
up:attribution _:756979 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000287 .
_:757017 a rdf:Statement ;
up:attribution _:756980 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005524 .
_:757018 a rdf:Statement ;
up:attribution _:756981 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009030 .
_:757019 a rdf:Statement ;
up:attribution _:756982 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009229 .
_:757020 a rdf:Statement ;
up:source unirule:MF_02128 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:757021 a rdf:Statement ;
up:attribution _:756983 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:757022 a rdf:Statement ;
up:source unirule:MF_02128 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:757023 a rdf:Statement ;
up:attribution _:756984 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:757024 a rdf:Statement ;
up:source unirule:MF_02128 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:757025 a rdf:Statement ;
up:attribution _:756985 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:757026 a rdf:Statement ;
up:source unirule:MF_02128 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:757027 a rdf:Statement ;
up:attribution _:756986 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:757028 a rdf:Statement ;
up:source unirule:MF_02128 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:757029 a rdf:Statement ;
up:attribution _:756987 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:757030 a rdf:Statement ;
up:source unirule:MF_02128 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
_:757031 a rdf:Statement ;
up:attribution _:756988 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
_:757032 a rdf:Statement ;
up:source unirule:MF_02128 ;
rdf:subject ?pfs50 ;
rdf:predicate up:annotation ;
rdf:object ?annotation51 .
_:757033 a rdf:Statement ;
up:attribution _:756989 ;
rdf:subject ?pfs50 ;
rdf:predicate up:annotation ;
rdf:object ?annotation51 .
_:757034 a rdf:Statement ;
up:source unirule:MF_02128 ;
rdf:subject ?pfs57 ;
rdf:predicate up:annotation ;
rdf:object ?annotation58 .
_:757035 a rdf:Statement ;
up:attribution _:756990 ;
rdf:subject ?pfs57 ;
rdf:predicate up:annotation ;
rdf:object ?annotation58 .
_:757036 a rdf:Statement ;
up:source unirule:MF_02128 ;
rdf:subject ?pfs64 ;
rdf:predicate up:annotation ;
rdf:object ?annotation65 .
_:757037 a rdf:Statement ;
up:attribution _:756991 ;
rdf:subject ?pfs64 ;
rdf:predicate up:annotation ;
rdf:object ?annotation65 .
_:757038 a rdf:Statement ;
up:source unirule:MF_02128 ;
rdf:subject ?pfs71 ;
rdf:predicate up:annotation ;
rdf:object ?annotation72 .
_:757039 a rdf:Statement ;
up:attribution _:756992 ;
rdf:subject ?pfs71 ;
rdf:predicate up:annotation ;
rdf:object ?annotation72 .
_:757040 a rdf:Statement ;
up:source unirule:MF_02128 ;
rdf:subject ?pfs78 ;
rdf:predicate up:annotation ;
rdf:object ?annotation79 .
_:757041 a rdf:Statement ;
up:attribution _:756993 ;
rdf:subject ?pfs78 ;
rdf:predicate up:annotation ;
rdf:object ?annotation79 .
_:757042 a rdf:Statement ;
up:source unirule:MF_02128 ;
rdf:subject ?pfs85 ;
rdf:predicate up:annotation ;
rdf:object ?annotation86 .
_:757043 a rdf:Statement ;
up:attribution _:756994 ;
rdf:subject ?pfs85 ;
rdf:predicate up:annotation ;
rdf:object ?annotation86 .
_:757044 a rdf:Statement ;
up:source unirule:MF_02128 ;
rdf:subject ?pfs92 ;
rdf:predicate up:annotation ;
rdf:object ?annotation93 .
_:757045 a rdf:Statement ;
up:attribution _:756995 ;
rdf:subject ?pfs92 ;
rdf:predicate up:annotation ;
rdf:object ?annotation93 .
_:757046 a rdf:Statement ;
up:source unirule:MF_02128 ;
rdf:subject ?pfs99 ;
rdf:predicate up:annotation ;
rdf:object ?annotation100 .
_:757047 a rdf:Statement ;
up:attribution _:756996 ;
rdf:subject ?pfs99 ;
rdf:predicate up:annotation ;
rdf:object ?annotation100 .
_:757048 a rdf:Statement ;
up:source unirule:MF_02128 ;
rdf:subject ?pfs107 ;
rdf:predicate up:annotation ;
rdf:object ?annotation108 .
_:757049 a rdf:Statement ;
up:attribution _:756997 ;
rdf:subject ?pfs107 ;
rdf:predicate up:annotation ;
rdf:object ?annotation108 .
_:757050 a rdf:Statement ;
up:source unirule:MF_02128 ;
rdf:subject ?pfs114 ;
rdf:predicate up:annotation ;
rdf:object ?annotation115 .
_:757051 a rdf:Statement ;
up:attribution _:756998 ;
rdf:subject ?pfs114 ;
rdf:predicate up:annotation ;
rdf:object ?annotation115 .
_:757052 a rdf:Statement ;
up:source unirule:MF_02128 ;
rdf:subject ?pfs121 ;
rdf:predicate up:annotation ;
rdf:object ?annotation122 .
_:757053 a rdf:Statement ;
up:attribution _:756999 ;
rdf:subject ?pfs121 ;
rdf:predicate up:annotation ;
rdf:object ?annotation122 .
_:757054 a rdf:Statement ;
up:source unirule:MF_02128 ;
rdf:subject ?pfs128 ;
rdf:predicate up:annotation ;
rdf:object ?annotation129 .
_:757055 a rdf:Statement ;
up:attribution _:757000 ;
rdf:subject ?pfs128 ;
rdf:predicate up:annotation ;
rdf:object ?annotation129 .
_:757056 a rdf:Statement ;
up:source unirule:MF_02128 ;
rdf:subject ?pfs136 ;
rdf:predicate up:annotation ;
rdf:object ?annotation137 .
_:757057 a rdf:Statement ;
up:attribution _:757001 ;
rdf:subject ?pfs136 ;
rdf:predicate up:annotation ;
rdf:object ?annotation137 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_02128
#Rule MF_02128 Created by:? on:2012-01-03 Modified by:Edouard de Castro on:2024-09-02
VALUES ?supertaxon144 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_02128 .
?thisOrganism rdfs:subClassOf+ ?supertaxon144 .
BIND(URI(CONCAT(STR(?this), '#MF_02128a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_02128a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_02128a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_02128a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_02128a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_02128a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch149 faldo:location ?templateMotifSequenceMatchRegionO67883150 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO67883152 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO67883MF_02128145 .
?templateMotifSequenceMatchRegionO67883150 faldo:begin ?templateMotifSequenceMatchBeginO67883151 .
?templateMotifSequenceMatchBeginO67883151 faldo:position ?templateMotifSequenceMatchBeginPositionO67883146 ;
faldo:reference isoform:O67883-1 .
?templateMotifSequenceProfileAlignmentOperationO67883152 edam:has_input signature:MF_02128 ;
rdf:type edam:operation_0300 .
?targetMotifMatch153 faldo:location ?targetMotifMatchRegionMatch154 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02128156 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO67883MF_02128147 .
?targetMotifMatchRegionMatch154 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02128155 .
?targetMotifMatchRegionMatchBeginMF_02128155 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02128148 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02128156 edam:has_input signature:MF_02128 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO67883MF_02128145, 1, (STRLEN(?templateMotifCigarO67883MF_02128145) - STRLEN(REPLACE(?templateMotifCigarO67883MF_02128145, CONCAT('^(?:-*[^-]){', STR(((118 - ?templateMotifSequenceMatchBeginPositionO67883146) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1157) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO67883MF_02128147, 1, (STRLEN(?targetMotifMatchCigarO67883MF_02128147) - STRLEN(REPLACE(?targetMotifMatchCigarO67883MF_02128147, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1157), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO67883MF_02128147, 1, (STRLEN(?targetMotifMatchCigarO67883MF_02128147) - STRLEN(REPLACE(?targetMotifMatchCigarO67883MF_02128147, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1157), '}'), '')))), '[^-]', ''))) AS ?step2158) .
BIND(((?step2158 + ?targetMotifMatchRegionMatchBeginPositionMF_02128148) - 1) AS ?thisPositionOn13) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO67883MF_02128145, 1, (STRLEN(?templateMotifCigarO67883MF_02128145) - STRLEN(REPLACE(?templateMotifCigarO67883MF_02128145, CONCAT('^(?:-*[^-]){', STR(((119 - ?templateMotifSequenceMatchBeginPositionO67883146) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1159) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO67883MF_02128147, 1, (STRLEN(?targetMotifMatchCigarO67883MF_02128147) - STRLEN(REPLACE(?targetMotifMatchCigarO67883MF_02128147, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1159), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO67883MF_02128147, 1, (STRLEN(?targetMotifMatchCigarO67883MF_02128147) - STRLEN(REPLACE(?targetMotifMatchCigarO67883MF_02128147, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1159), '}'), '')))), '[^-]', ''))) AS ?step2160) .
BIND(((?step2160 + ?targetMotifMatchRegionMatchBeginPositionMF_02128148) - 1) AS ?thisPositionOn14) .
BIND(?this AS ?pfs1t161) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse11) .
FILTER (REGEX('G[ND]', SUBSTR(?thisSequenceValue, ?thisPositionOn13, (?thisPositionOn14 - ?thisPositionOn13)))) .
BIND(URI(CONCAT(STR(?this), '#MF_02128a9')) AS ?annotation9) .
BIND(?this AS ?pfs8) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch166 faldo:location ?templateMotifSequenceMatchRegionO67883167 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO67883169 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO67883MF_02128162 .
?templateMotifSequenceMatchRegionO67883167 faldo:begin ?templateMotifSequenceMatchBeginO67883168 .
?templateMotifSequenceMatchBeginO67883168 faldo:position ?templateMotifSequenceMatchBeginPositionO67883163 ;
faldo:reference isoform:O67883-1 .
?templateMotifSequenceProfileAlignmentOperationO67883169 edam:has_input signature:MF_02128 ;
rdf:type edam:operation_0300 .
?targetMotifMatch170 faldo:location ?targetMotifMatchRegionMatch171 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02128173 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO67883MF_02128164 .
?targetMotifMatchRegionMatch171 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02128172 .
?targetMotifMatchRegionMatchBeginMF_02128172 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02128165 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02128173 edam:has_input signature:MF_02128 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO67883MF_02128162, 1, (STRLEN(?templateMotifCigarO67883MF_02128162) - STRLEN(REPLACE(?templateMotifCigarO67883MF_02128162, CONCAT('^(?:-*[^-]){', STR(((27 - ?templateMotifSequenceMatchBeginPositionO67883163) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1174) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO67883MF_02128164, 1, (STRLEN(?targetMotifMatchCigarO67883MF_02128164) - STRLEN(REPLACE(?targetMotifMatchCigarO67883MF_02128164, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1174), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO67883MF_02128164, 1, (STRLEN(?targetMotifMatchCigarO67883MF_02128164) - STRLEN(REPLACE(?targetMotifMatchCigarO67883MF_02128164, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1174), '}'), '')))), '[^-]', ''))) AS ?step2175) .
BIND(((?step2175 + ?targetMotifMatchRegionMatchBeginPositionMF_02128165) - 1) AS ?thisPositionOn20) .
BIND(?thisPositionOn20 AS ?thisPositionOn21) .
BIND(?this AS ?pfs1t176) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb17) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse18) .
FILTER (REGEX('[DE]', SUBSTR(?thisSequenceValue, ?thisPositionOn20, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_02128a16')) AS ?annotation16) .
BIND(?this AS ?pfs15) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch181 faldo:location ?templateMotifSequenceMatchRegionO67883182 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO67883184 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO67883MF_02128177 .
?templateMotifSequenceMatchRegionO67883182 faldo:begin ?templateMotifSequenceMatchBeginO67883183 .
?templateMotifSequenceMatchBeginO67883183 faldo:position ?templateMotifSequenceMatchBeginPositionO67883178 ;
faldo:reference isoform:O67883-1 .
?templateMotifSequenceProfileAlignmentOperationO67883184 edam:has_input signature:MF_02128 ;
rdf:type edam:operation_0300 .
?targetMotifMatch185 faldo:location ?targetMotifMatchRegionMatch186 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02128188 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO67883MF_02128179 .
?targetMotifMatchRegionMatch186 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02128187 .
?targetMotifMatchRegionMatchBeginMF_02128187 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02128180 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02128188 edam:has_input signature:MF_02128 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO67883MF_02128177, 1, (STRLEN(?templateMotifCigarO67883MF_02128177) - STRLEN(REPLACE(?templateMotifCigarO67883MF_02128177, CONCAT('^(?:-*[^-]){', STR(((27 - ?templateMotifSequenceMatchBeginPositionO67883178) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1189) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO67883MF_02128179, 1, (STRLEN(?targetMotifMatchCigarO67883MF_02128179) - STRLEN(REPLACE(?targetMotifMatchCigarO67883MF_02128179, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1189), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO67883MF_02128179, 1, (STRLEN(?targetMotifMatchCigarO67883MF_02128179) - STRLEN(REPLACE(?targetMotifMatchCigarO67883MF_02128179, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1189), '}'), '')))), '[^-]', ''))) AS ?step2190) .
BIND(((?step2190 + ?targetMotifMatchRegionMatchBeginPositionMF_02128180) - 1) AS ?thisPositionOn27) .
BIND(?thisPositionOn27 AS ?thisPositionOn28) .
BIND(?this AS ?pfs1t191) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb24) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse25) .
FILTER (REGEX('[DE]', SUBSTR(?thisSequenceValue, ?thisPositionOn27, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_02128a23')) AS ?annotation23) .
BIND(?this AS ?pfs22) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch196 faldo:location ?templateMotifSequenceMatchRegionO67883197 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO67883199 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO67883MF_02128192 .
?templateMotifSequenceMatchRegionO67883197 faldo:begin ?templateMotifSequenceMatchBeginO67883198 .
?templateMotifSequenceMatchBeginO67883198 faldo:position ?templateMotifSequenceMatchBeginPositionO67883193 ;
faldo:reference isoform:O67883-1 .
?templateMotifSequenceProfileAlignmentOperationO67883199 edam:has_input signature:MF_02128 ;
rdf:type edam:operation_0300 .
?targetMotifMatch200 faldo:location ?targetMotifMatchRegionMatch201 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02128203 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO67883MF_02128194 .
?targetMotifMatchRegionMatch201 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02128202 .
?targetMotifMatchRegionMatchBeginMF_02128202 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02128195 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02128203 edam:has_input signature:MF_02128 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO67883MF_02128192, 1, (STRLEN(?templateMotifCigarO67883MF_02128192) - STRLEN(REPLACE(?templateMotifCigarO67883MF_02128192, CONCAT('^(?:-*[^-]){', STR(((41 - ?templateMotifSequenceMatchBeginPositionO67883193) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1204) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO67883MF_02128194, 1, (STRLEN(?targetMotifMatchCigarO67883MF_02128194) - STRLEN(REPLACE(?targetMotifMatchCigarO67883MF_02128194, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1204), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO67883MF_02128194, 1, (STRLEN(?targetMotifMatchCigarO67883MF_02128194) - STRLEN(REPLACE(?targetMotifMatchCigarO67883MF_02128194, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1204), '}'), '')))), '[^-]', ''))) AS ?step2205) .
BIND(((?step2205 + ?targetMotifMatchRegionMatchBeginPositionMF_02128195) - 1) AS ?thisPositionOn34) .
BIND(?thisPositionOn34 AS ?thisPositionOn35) .
BIND(?this AS ?pfs1t206) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb31) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse32) .
FILTER (REGEX('[TS]', SUBSTR(?thisSequenceValue, ?thisPositionOn34, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_02128a30')) AS ?annotation30) .
BIND(?this AS ?pfs29) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch211 faldo:location ?templateMotifSequenceMatchRegionO67883212 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO67883214 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO67883MF_02128207 .
?templateMotifSequenceMatchRegionO67883212 faldo:begin ?templateMotifSequenceMatchBeginO67883213 .
?templateMotifSequenceMatchBeginO67883213 faldo:position ?templateMotifSequenceMatchBeginPositionO67883208 ;
faldo:reference isoform:O67883-1 .
?templateMotifSequenceProfileAlignmentOperationO67883214 edam:has_input signature:MF_02128 ;
rdf:type edam:operation_0300 .
?targetMotifMatch215 faldo:location ?targetMotifMatchRegionMatch216 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02128218 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO67883MF_02128209 .
?targetMotifMatchRegionMatch216 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02128217 .
?targetMotifMatchRegionMatchBeginMF_02128217 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02128210 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02128218 edam:has_input signature:MF_02128 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO67883MF_02128207, 1, (STRLEN(?templateMotifCigarO67883MF_02128207) - STRLEN(REPLACE(?templateMotifCigarO67883MF_02128207, CONCAT('^(?:-*[^-]){', STR(((42 - ?templateMotifSequenceMatchBeginPositionO67883208) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1219) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO67883MF_02128209, 1, (STRLEN(?targetMotifMatchCigarO67883MF_02128209) - STRLEN(REPLACE(?targetMotifMatchCigarO67883MF_02128209, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1219), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO67883MF_02128209, 1, (STRLEN(?targetMotifMatchCigarO67883MF_02128209) - STRLEN(REPLACE(?targetMotifMatchCigarO67883MF_02128209, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1219), '}'), '')))), '[^-]', ''))) AS ?step2220) .
BIND(((?step2220 + ?targetMotifMatchRegionMatchBeginPositionMF_02128210) - 1) AS ?thisPositionOn41) .
BIND(?thisPositionOn41 AS ?thisPositionOn42) .
BIND(?this AS ?pfs1t221) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfsb38) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfse39) .
FILTER (REGEX('[TS]', SUBSTR(?thisSequenceValue, ?thisPositionOn41, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_02128a37')) AS ?annotation37) .
BIND(?this AS ?pfs36) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch226 faldo:location ?templateMotifSequenceMatchRegionO67883227 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO67883229 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO67883MF_02128222 .
?templateMotifSequenceMatchRegionO67883227 faldo:begin ?templateMotifSequenceMatchBeginO67883228 .
?templateMotifSequenceMatchBeginO67883228 faldo:position ?templateMotifSequenceMatchBeginPositionO67883223 ;
faldo:reference isoform:O67883-1 .
?templateMotifSequenceProfileAlignmentOperationO67883229 edam:has_input signature:MF_02128 ;
rdf:type edam:operation_0300 .
?targetMotifMatch230 faldo:location ?targetMotifMatchRegionMatch231 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02128233 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO67883MF_02128224 .
?targetMotifMatchRegionMatch231 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02128232 .
?targetMotifMatchRegionMatchBeginMF_02128232 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02128225 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02128233 edam:has_input signature:MF_02128 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO67883MF_02128222, 1, (STRLEN(?templateMotifCigarO67883MF_02128222) - STRLEN(REPLACE(?templateMotifCigarO67883MF_02128222, CONCAT('^(?:-*[^-]){', STR(((43 - ?templateMotifSequenceMatchBeginPositionO67883223) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1234) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO67883MF_02128224, 1, (STRLEN(?targetMotifMatchCigarO67883MF_02128224) - STRLEN(REPLACE(?targetMotifMatchCigarO67883MF_02128224, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1234), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO67883MF_02128224, 1, (STRLEN(?targetMotifMatchCigarO67883MF_02128224) - STRLEN(REPLACE(?targetMotifMatchCigarO67883MF_02128224, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1234), '}'), '')))), '[^-]', ''))) AS ?step2235) .
BIND(((?step2235 + ?targetMotifMatchRegionMatchBeginPositionMF_02128225) - 1) AS ?thisPositionOn48) .
BIND(?thisPositionOn48 AS ?thisPositionOn49) .
BIND(?this AS ?pfs1t236) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfsb45) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfse46) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn48, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_02128a44')) AS ?annotation44) .
BIND(?this AS ?pfs43) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch241 faldo:location ?templateMotifSequenceMatchRegionO67883242 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO67883244 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO67883MF_02128237 .
?templateMotifSequenceMatchRegionO67883242 faldo:begin ?templateMotifSequenceMatchBeginO67883243 .
?templateMotifSequenceMatchBeginO67883243 faldo:position ?templateMotifSequenceMatchBeginPositionO67883238 ;
faldo:reference isoform:O67883-1 .
?templateMotifSequenceProfileAlignmentOperationO67883244 edam:has_input signature:MF_02128 ;
rdf:type edam:operation_0300 .
?targetMotifMatch245 faldo:location ?targetMotifMatchRegionMatch246 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02128248 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO67883MF_02128239 .
?targetMotifMatchRegionMatch246 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02128247 .
?targetMotifMatchRegionMatchBeginMF_02128247 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02128240 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02128248 edam:has_input signature:MF_02128 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO67883MF_02128237, 1, (STRLEN(?templateMotifCigarO67883MF_02128237) - STRLEN(REPLACE(?templateMotifCigarO67883MF_02128237, CONCAT('^(?:-*[^-]){', STR(((43 - ?templateMotifSequenceMatchBeginPositionO67883238) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1249) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO67883MF_02128239, 1, (STRLEN(?targetMotifMatchCigarO67883MF_02128239) - STRLEN(REPLACE(?targetMotifMatchCigarO67883MF_02128239, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1249), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO67883MF_02128239, 1, (STRLEN(?targetMotifMatchCigarO67883MF_02128239) - STRLEN(REPLACE(?targetMotifMatchCigarO67883MF_02128239, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1249), '}'), '')))), '[^-]', ''))) AS ?step2250) .
BIND(((?step2250 + ?targetMotifMatchRegionMatchBeginPositionMF_02128240) - 1) AS ?thisPositionOn55) .
BIND(?thisPositionOn55 AS ?thisPositionOn56) .
BIND(?this AS ?pfs1t251) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfsb52) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfse53) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn55, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_02128a51')) AS ?annotation51) .
BIND(?this AS ?pfs50) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch256 faldo:location ?templateMotifSequenceMatchRegionO67883257 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO67883259 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO67883MF_02128252 .
?templateMotifSequenceMatchRegionO67883257 faldo:begin ?templateMotifSequenceMatchBeginO67883258 .
?templateMotifSequenceMatchBeginO67883258 faldo:position ?templateMotifSequenceMatchBeginPositionO67883253 ;
faldo:reference isoform:O67883-1 .
?templateMotifSequenceProfileAlignmentOperationO67883259 edam:has_input signature:MF_02128 ;
rdf:type edam:operation_0300 .
?targetMotifMatch260 faldo:location ?targetMotifMatchRegionMatch261 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02128263 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO67883MF_02128254 .
?targetMotifMatchRegionMatch261 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02128262 .
?targetMotifMatchRegionMatchBeginMF_02128262 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02128255 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02128263 edam:has_input signature:MF_02128 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO67883MF_02128252, 1, (STRLEN(?templateMotifCigarO67883MF_02128252) - STRLEN(REPLACE(?templateMotifCigarO67883MF_02128252, CONCAT('^(?:-*[^-]){', STR(((71 - ?templateMotifSequenceMatchBeginPositionO67883253) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1264) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO67883MF_02128254, 1, (STRLEN(?targetMotifMatchCigarO67883MF_02128254) - STRLEN(REPLACE(?targetMotifMatchCigarO67883MF_02128254, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1264), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO67883MF_02128254, 1, (STRLEN(?targetMotifMatchCigarO67883MF_02128254) - STRLEN(REPLACE(?targetMotifMatchCigarO67883MF_02128254, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1264), '}'), '')))), '[^-]', ''))) AS ?step2265) .
BIND(((?step2265 + ?targetMotifMatchRegionMatchBeginPositionMF_02128255) - 1) AS ?thisPositionOn62) .
BIND(?thisPositionOn62 AS ?thisPositionOn63) .
BIND(?this AS ?pfs1t266) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfsb59) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfse60) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn62, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_02128a58')) AS ?annotation58) .
BIND(?this AS ?pfs57) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch271 faldo:location ?templateMotifSequenceMatchRegionO67883272 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO67883274 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO67883MF_02128267 .
?templateMotifSequenceMatchRegionO67883272 faldo:begin ?templateMotifSequenceMatchBeginO67883273 .
?templateMotifSequenceMatchBeginO67883273 faldo:position ?templateMotifSequenceMatchBeginPositionO67883268 ;
faldo:reference isoform:O67883-1 .
?templateMotifSequenceProfileAlignmentOperationO67883274 edam:has_input signature:MF_02128 ;
rdf:type edam:operation_0300 .
?targetMotifMatch275 faldo:location ?targetMotifMatchRegionMatch276 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02128278 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO67883MF_02128269 .
?targetMotifMatchRegionMatch276 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02128277 .
?targetMotifMatchRegionMatchBeginMF_02128277 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02128270 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02128278 edam:has_input signature:MF_02128 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO67883MF_02128267, 1, (STRLEN(?templateMotifCigarO67883MF_02128267) - STRLEN(REPLACE(?templateMotifCigarO67883MF_02128267, CONCAT('^(?:-*[^-]){', STR(((71 - ?templateMotifSequenceMatchBeginPositionO67883268) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1279) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO67883MF_02128269, 1, (STRLEN(?targetMotifMatchCigarO67883MF_02128269) - STRLEN(REPLACE(?targetMotifMatchCigarO67883MF_02128269, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1279), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO67883MF_02128269, 1, (STRLEN(?targetMotifMatchCigarO67883MF_02128269) - STRLEN(REPLACE(?targetMotifMatchCigarO67883MF_02128269, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1279), '}'), '')))), '[^-]', ''))) AS ?step2280) .
BIND(((?step2280 + ?targetMotifMatchRegionMatchBeginPositionMF_02128270) - 1) AS ?thisPositionOn69) .
BIND(?thisPositionOn69 AS ?thisPositionOn70) .
BIND(?this AS ?pfs1t281) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn69))) AS ?pfsb66) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn70))) AS ?pfse67) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn69, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_02128a65')) AS ?annotation65) .
BIND(?this AS ?pfs64) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch286 faldo:location ?templateMotifSequenceMatchRegionO67883287 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO67883289 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO67883MF_02128282 .
?templateMotifSequenceMatchRegionO67883287 faldo:begin ?templateMotifSequenceMatchBeginO67883288 .
?templateMotifSequenceMatchBeginO67883288 faldo:position ?templateMotifSequenceMatchBeginPositionO67883283 ;
faldo:reference isoform:O67883-1 .
?templateMotifSequenceProfileAlignmentOperationO67883289 edam:has_input signature:MF_02128 ;
rdf:type edam:operation_0300 .
?targetMotifMatch290 faldo:location ?targetMotifMatchRegionMatch291 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02128293 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO67883MF_02128284 .
?targetMotifMatchRegionMatch291 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02128292 .
?targetMotifMatchRegionMatchBeginMF_02128292 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02128285 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02128293 edam:has_input signature:MF_02128 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO67883MF_02128282, 1, (STRLEN(?templateMotifCigarO67883MF_02128282) - STRLEN(REPLACE(?templateMotifCigarO67883MF_02128282, CONCAT('^(?:-*[^-]){', STR(((71 - ?templateMotifSequenceMatchBeginPositionO67883283) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1294) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO67883MF_02128284, 1, (STRLEN(?targetMotifMatchCigarO67883MF_02128284) - STRLEN(REPLACE(?targetMotifMatchCigarO67883MF_02128284, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1294), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO67883MF_02128284, 1, (STRLEN(?targetMotifMatchCigarO67883MF_02128284) - STRLEN(REPLACE(?targetMotifMatchCigarO67883MF_02128284, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1294), '}'), '')))), '[^-]', ''))) AS ?step2295) .
BIND(((?step2295 + ?targetMotifMatchRegionMatchBeginPositionMF_02128285) - 1) AS ?thisPositionOn76) .
BIND(?thisPositionOn76 AS ?thisPositionOn77) .
BIND(?this AS ?pfs1t296) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn76))) AS ?pfsb73) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn77))) AS ?pfse74) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn76, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_02128a72')) AS ?annotation72) .
BIND(?this AS ?pfs71) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch301 faldo:location ?templateMotifSequenceMatchRegionO67883302 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO67883304 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO67883MF_02128297 .
?templateMotifSequenceMatchRegionO67883302 faldo:begin ?templateMotifSequenceMatchBeginO67883303 .
?templateMotifSequenceMatchBeginO67883303 faldo:position ?templateMotifSequenceMatchBeginPositionO67883298 ;
faldo:reference isoform:O67883-1 .
?templateMotifSequenceProfileAlignmentOperationO67883304 edam:has_input signature:MF_02128 ;
rdf:type edam:operation_0300 .
?targetMotifMatch305 faldo:location ?targetMotifMatchRegionMatch306 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02128308 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO67883MF_02128299 .
?targetMotifMatchRegionMatch306 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02128307 .
?targetMotifMatchRegionMatchBeginMF_02128307 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02128300 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02128308 edam:has_input signature:MF_02128 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO67883MF_02128297, 1, (STRLEN(?templateMotifCigarO67883MF_02128297) - STRLEN(REPLACE(?templateMotifCigarO67883MF_02128297, CONCAT('^(?:-*[^-]){', STR(((119 - ?templateMotifSequenceMatchBeginPositionO67883298) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1309) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO67883MF_02128299, 1, (STRLEN(?targetMotifMatchCigarO67883MF_02128299) - STRLEN(REPLACE(?targetMotifMatchCigarO67883MF_02128299, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1309), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO67883MF_02128299, 1, (STRLEN(?targetMotifMatchCigarO67883MF_02128299) - STRLEN(REPLACE(?targetMotifMatchCigarO67883MF_02128299, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1309), '}'), '')))), '[^-]', ''))) AS ?step2310) .
BIND(((?step2310 + ?targetMotifMatchRegionMatchBeginPositionMF_02128300) - 1) AS ?thisPositionOn83) .
BIND(?thisPositionOn83 AS ?thisPositionOn84) .
BIND(?this AS ?pfs1t311) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn83))) AS ?pfsb80) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn84))) AS ?pfse81) .
FILTER (REGEX('[ND]', SUBSTR(?thisSequenceValue, ?thisPositionOn83, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_02128a79')) AS ?annotation79) .
BIND(?this AS ?pfs78) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch316 faldo:location ?templateMotifSequenceMatchRegionO67883317 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO67883319 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO67883MF_02128312 .
?templateMotifSequenceMatchRegionO67883317 faldo:begin ?templateMotifSequenceMatchBeginO67883318 .
?templateMotifSequenceMatchBeginO67883318 faldo:position ?templateMotifSequenceMatchBeginPositionO67883313 ;
faldo:reference isoform:O67883-1 .
?templateMotifSequenceProfileAlignmentOperationO67883319 edam:has_input signature:MF_02128 ;
rdf:type edam:operation_0300 .
?targetMotifMatch320 faldo:location ?targetMotifMatchRegionMatch321 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02128323 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO67883MF_02128314 .
?targetMotifMatchRegionMatch321 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02128322 .
?targetMotifMatchRegionMatchBeginMF_02128322 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02128315 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02128323 edam:has_input signature:MF_02128 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO67883MF_02128312, 1, (STRLEN(?templateMotifCigarO67883MF_02128312) - STRLEN(REPLACE(?templateMotifCigarO67883MF_02128312, CONCAT('^(?:-*[^-]){', STR(((207 - ?templateMotifSequenceMatchBeginPositionO67883313) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1324) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO67883MF_02128314, 1, (STRLEN(?targetMotifMatchCigarO67883MF_02128314) - STRLEN(REPLACE(?targetMotifMatchCigarO67883MF_02128314, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1324), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO67883MF_02128314, 1, (STRLEN(?targetMotifMatchCigarO67883MF_02128314) - STRLEN(REPLACE(?targetMotifMatchCigarO67883MF_02128314, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1324), '}'), '')))), '[^-]', ''))) AS ?step2325) .
BIND(((?step2325 + ?targetMotifMatchRegionMatchBeginPositionMF_02128315) - 1) AS ?thisPositionOn90) .
BIND(?thisPositionOn90 AS ?thisPositionOn91) .
BIND(?this AS ?pfs1t326) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn90))) AS ?pfsb87) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn91))) AS ?pfse88) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn90, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_02128a86')) AS ?annotation86) .
BIND(?this AS ?pfs85) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch331 faldo:location ?templateMotifSequenceMatchRegionO67883332 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO67883334 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO67883MF_02128327 .
?templateMotifSequenceMatchRegionO67883332 faldo:begin ?templateMotifSequenceMatchBeginO67883333 .
?templateMotifSequenceMatchBeginO67883333 faldo:position ?templateMotifSequenceMatchBeginPositionO67883328 ;
faldo:reference isoform:O67883-1 .
?templateMotifSequenceProfileAlignmentOperationO67883334 edam:has_input signature:MF_02128 ;
rdf:type edam:operation_0300 .
?targetMotifMatch335 faldo:location ?targetMotifMatchRegionMatch336 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02128338 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO67883MF_02128329 .
?targetMotifMatchRegionMatch336 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02128337 .
?targetMotifMatchRegionMatchBeginMF_02128337 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02128330 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02128338 edam:has_input signature:MF_02128 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO67883MF_02128327, 1, (STRLEN(?templateMotifCigarO67883MF_02128327) - STRLEN(REPLACE(?templateMotifCigarO67883MF_02128327, CONCAT('^(?:-*[^-]){', STR(((210 - ?templateMotifSequenceMatchBeginPositionO67883328) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1339) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO67883MF_02128329, 1, (STRLEN(?targetMotifMatchCigarO67883MF_02128329) - STRLEN(REPLACE(?targetMotifMatchCigarO67883MF_02128329, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1339), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO67883MF_02128329, 1, (STRLEN(?targetMotifMatchCigarO67883MF_02128329) - STRLEN(REPLACE(?targetMotifMatchCigarO67883MF_02128329, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1339), '}'), '')))), '[^-]', ''))) AS ?step2340) .
BIND(((?step2340 + ?targetMotifMatchRegionMatchBeginPositionMF_02128330) - 1) AS ?thisPositionOn97) .
BIND(?thisPositionOn97 AS ?thisPositionOn98) .
BIND(?this AS ?pfs1t341) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn97))) AS ?pfsb94) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn98))) AS ?pfse95) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn97, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_02128a93')) AS ?annotation93) .
BIND(?this AS ?pfs92) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch346 faldo:location ?templateMotifSequenceMatchRegionO67883347 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO67883349 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO67883MF_02128342 .
?templateMotifSequenceMatchRegionO67883347 faldo:begin ?templateMotifSequenceMatchBeginO67883348 .
?templateMotifSequenceMatchBeginO67883348 faldo:position ?templateMotifSequenceMatchBeginPositionO67883343 ;
faldo:reference isoform:O67883-1 .
?templateMotifSequenceProfileAlignmentOperationO67883349 edam:has_input signature:MF_02128 ;
rdf:type edam:operation_0300 .
?targetMotifMatch350 faldo:location ?targetMotifMatchRegionMatch351 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02128353 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO67883MF_02128344 .
?targetMotifMatchRegionMatch351 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02128352 .
?targetMotifMatchRegionMatchBeginMF_02128352 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02128345 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02128353 edam:has_input signature:MF_02128 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO67883MF_02128342, 1, (STRLEN(?templateMotifCigarO67883MF_02128342) - STRLEN(REPLACE(?templateMotifCigarO67883MF_02128342, CONCAT('^(?:-*[^-]){', STR(((50 - ?templateMotifSequenceMatchBeginPositionO67883343) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1354) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO67883MF_02128344, 1, (STRLEN(?targetMotifMatchCigarO67883MF_02128344) - STRLEN(REPLACE(?targetMotifMatchCigarO67883MF_02128344, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1354), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO67883MF_02128344, 1, (STRLEN(?targetMotifMatchCigarO67883MF_02128344) - STRLEN(REPLACE(?targetMotifMatchCigarO67883MF_02128344, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1354), '}'), '')))), '[^-]', ''))) AS ?step2355) .
BIND(((?step2355 + ?targetMotifMatchRegionMatchBeginPositionMF_02128345) - 1) AS ?thisPositionOn105) .
BIND(?thisPositionOn105 AS ?thisPositionOn106) .
BIND(?this AS ?pfs1t356) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn105))) AS ?pfsb101) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn106))) AS ?pfse102) .
FILTER (REGEX('[HD]', SUBSTR(?thisSequenceValue, ?thisPositionOn105, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_02128a100')) AS ?annotation100) .
BIND(?this AS ?pfs99) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch361 faldo:location ?templateMotifSequenceMatchRegionO67883362 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO67883364 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO67883MF_02128357 .
?templateMotifSequenceMatchRegionO67883362 faldo:begin ?templateMotifSequenceMatchBeginO67883363 .
?templateMotifSequenceMatchBeginO67883363 faldo:position ?templateMotifSequenceMatchBeginPositionO67883358 ;
faldo:reference isoform:O67883-1 .
?templateMotifSequenceProfileAlignmentOperationO67883364 edam:has_input signature:MF_02128 ;
rdf:type edam:operation_0300 .
?targetMotifMatch365 faldo:location ?targetMotifMatchRegionMatch366 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02128368 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO67883MF_02128359 .
?targetMotifMatchRegionMatch366 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02128367 .
?targetMotifMatchRegionMatchBeginMF_02128367 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02128360 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02128368 edam:has_input signature:MF_02128 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO67883MF_02128357, 1, (STRLEN(?templateMotifCigarO67883MF_02128357) - STRLEN(REPLACE(?templateMotifCigarO67883MF_02128357, CONCAT('^(?:-*[^-]){', STR(((101 - ?templateMotifSequenceMatchBeginPositionO67883358) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1369) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO67883MF_02128359, 1, (STRLEN(?targetMotifMatchCigarO67883MF_02128359) - STRLEN(REPLACE(?targetMotifMatchCigarO67883MF_02128359, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1369), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO67883MF_02128359, 1, (STRLEN(?targetMotifMatchCigarO67883MF_02128359) - STRLEN(REPLACE(?targetMotifMatchCigarO67883MF_02128359, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1369), '}'), '')))), '[^-]', ''))) AS ?step2370) .
BIND(((?step2370 + ?targetMotifMatchRegionMatchBeginPositionMF_02128360) - 1) AS ?thisPositionOn112) .
BIND(?thisPositionOn112 AS ?thisPositionOn113) .
BIND(?this AS ?pfs1t371) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn112))) AS ?pfsb109) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn113))) AS ?pfse110) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn112, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_02128a108')) AS ?annotation108) .
BIND(?this AS ?pfs107) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch376 faldo:location ?templateMotifSequenceMatchRegionO67883377 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO67883379 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO67883MF_02128372 .
?templateMotifSequenceMatchRegionO67883377 faldo:begin ?templateMotifSequenceMatchBeginO67883378 .
?templateMotifSequenceMatchBeginO67883378 faldo:position ?templateMotifSequenceMatchBeginPositionO67883373 ;
faldo:reference isoform:O67883-1 .
?templateMotifSequenceProfileAlignmentOperationO67883379 edam:has_input signature:MF_02128 ;
rdf:type edam:operation_0300 .
?targetMotifMatch380 faldo:location ?targetMotifMatchRegionMatch381 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02128383 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO67883MF_02128374 .
?targetMotifMatchRegionMatch381 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02128382 .
?targetMotifMatchRegionMatchBeginMF_02128382 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02128375 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02128383 edam:has_input signature:MF_02128 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO67883MF_02128372, 1, (STRLEN(?templateMotifCigarO67883MF_02128372) - STRLEN(REPLACE(?templateMotifCigarO67883MF_02128372, CONCAT('^(?:-*[^-]){', STR(((142 - ?templateMotifSequenceMatchBeginPositionO67883373) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1384) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO67883MF_02128374, 1, (STRLEN(?targetMotifMatchCigarO67883MF_02128374) - STRLEN(REPLACE(?targetMotifMatchCigarO67883MF_02128374, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1384), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO67883MF_02128374, 1, (STRLEN(?targetMotifMatchCigarO67883MF_02128374) - STRLEN(REPLACE(?targetMotifMatchCigarO67883MF_02128374, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1384), '}'), '')))), '[^-]', ''))) AS ?step2385) .
BIND(((?step2385 + ?targetMotifMatchRegionMatchBeginPositionMF_02128375) - 1) AS ?thisPositionOn119) .
BIND(?thisPositionOn119 AS ?thisPositionOn120) .
BIND(?this AS ?pfs1t386) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn119))) AS ?pfsb116) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn120))) AS ?pfse117) .
FILTER (REGEX('[RK]', SUBSTR(?thisSequenceValue, ?thisPositionOn119, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_02128a115')) AS ?annotation115) .
BIND(?this AS ?pfs114) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch391 faldo:location ?templateMotifSequenceMatchRegionO67883392 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO67883394 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO67883MF_02128387 .
?templateMotifSequenceMatchRegionO67883392 faldo:begin ?templateMotifSequenceMatchBeginO67883393 .
?templateMotifSequenceMatchBeginO67883393 faldo:position ?templateMotifSequenceMatchBeginPositionO67883388 ;
faldo:reference isoform:O67883-1 .
?templateMotifSequenceProfileAlignmentOperationO67883394 edam:has_input signature:MF_02128 ;
rdf:type edam:operation_0300 .
?targetMotifMatch395 faldo:location ?targetMotifMatchRegionMatch396 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02128398 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO67883MF_02128389 .
?targetMotifMatchRegionMatch396 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02128397 .
?targetMotifMatchRegionMatchBeginMF_02128397 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02128390 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02128398 edam:has_input signature:MF_02128 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO67883MF_02128387, 1, (STRLEN(?templateMotifCigarO67883MF_02128387) - STRLEN(REPLACE(?templateMotifCigarO67883MF_02128387, CONCAT('^(?:-*[^-]){', STR(((209 - ?templateMotifSequenceMatchBeginPositionO67883388) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1399) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO67883MF_02128389, 1, (STRLEN(?targetMotifMatchCigarO67883MF_02128389) - STRLEN(REPLACE(?targetMotifMatchCigarO67883MF_02128389, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1399), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO67883MF_02128389, 1, (STRLEN(?targetMotifMatchCigarO67883MF_02128389) - STRLEN(REPLACE(?targetMotifMatchCigarO67883MF_02128389, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1399), '}'), '')))), '[^-]', ''))) AS ?step2400) .
BIND(((?step2400 + ?targetMotifMatchRegionMatchBeginPositionMF_02128390) - 1) AS ?thisPositionOn126) .
BIND(?thisPositionOn126 AS ?thisPositionOn127) .
BIND(?this AS ?pfs1t401) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn126))) AS ?pfsb123) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn127))) AS ?pfse124) .
FILTER (REGEX('[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn126, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_02128a122')) AS ?annotation122) .
BIND(?this AS ?pfs121) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch406 faldo:location ?templateMotifSequenceMatchRegionO67883407 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO67883409 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO67883MF_02128402 .
?templateMotifSequenceMatchRegionO67883407 faldo:begin ?templateMotifSequenceMatchBeginO67883408 .
?templateMotifSequenceMatchBeginO67883408 faldo:position ?templateMotifSequenceMatchBeginPositionO67883403 ;
faldo:reference isoform:O67883-1 .
?templateMotifSequenceProfileAlignmentOperationO67883409 edam:has_input signature:MF_02128 ;
rdf:type edam:operation_0300 .
?targetMotifMatch410 faldo:location ?targetMotifMatchRegionMatch411 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02128413 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO67883MF_02128404 .
?targetMotifMatchRegionMatch411 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02128412 .
?targetMotifMatchRegionMatchBeginMF_02128412 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02128405 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02128413 edam:has_input signature:MF_02128 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO67883MF_02128402, 1, (STRLEN(?templateMotifCigarO67883MF_02128402) - STRLEN(REPLACE(?templateMotifCigarO67883MF_02128402, CONCAT('^(?:-*[^-]){', STR(((260 - ?templateMotifSequenceMatchBeginPositionO67883403) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1414) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO67883MF_02128404, 1, (STRLEN(?targetMotifMatchCigarO67883MF_02128404) - STRLEN(REPLACE(?targetMotifMatchCigarO67883MF_02128404, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1414), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO67883MF_02128404, 1, (STRLEN(?targetMotifMatchCigarO67883MF_02128404) - STRLEN(REPLACE(?targetMotifMatchCigarO67883MF_02128404, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1414), '}'), '')))), '[^-]', ''))) AS ?step2415) .
BIND(((?step2415 + ?targetMotifMatchRegionMatchBeginPositionMF_02128405) - 1) AS ?thisPositionOn134) .
BIND(?thisPositionOn134 AS ?thisPositionOn135) .
BIND(?this AS ?pfs1t416) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn134))) AS ?pfsb130) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn135))) AS ?pfse131) .
FILTER (REGEX('[ED]', SUBSTR(?thisSequenceValue, ?thisPositionOn134, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_02128a129')) AS ?annotation129) .
BIND(?this AS ?pfs128) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch421 faldo:location ?templateMotifSequenceMatchRegionO67883422 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO67883424 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO67883MF_02128417 .
?templateMotifSequenceMatchRegionO67883422 faldo:begin ?templateMotifSequenceMatchBeginO67883423 .
?templateMotifSequenceMatchBeginO67883423 faldo:position ?templateMotifSequenceMatchBeginPositionO67883418 ;
faldo:reference isoform:O67883-1 .
?templateMotifSequenceProfileAlignmentOperationO67883424 edam:has_input signature:MF_02128 ;
rdf:type edam:operation_0300 .
?targetMotifMatch425 faldo:location ?targetMotifMatchRegionMatch426 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02128428 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO67883MF_02128419 .
?targetMotifMatchRegionMatch426 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02128427 .
?targetMotifMatchRegionMatchBeginMF_02128427 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02128420 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02128428 edam:has_input signature:MF_02128 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO67883MF_02128417, 1, (STRLEN(?templateMotifCigarO67883MF_02128417) - STRLEN(REPLACE(?templateMotifCigarO67883MF_02128417, CONCAT('^(?:-*[^-]){', STR(((303 - ?templateMotifSequenceMatchBeginPositionO67883418) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1429) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO67883MF_02128419, 1, (STRLEN(?targetMotifMatchCigarO67883MF_02128419) - STRLEN(REPLACE(?targetMotifMatchCigarO67883MF_02128419, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1429), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO67883MF_02128419, 1, (STRLEN(?targetMotifMatchCigarO67883MF_02128419) - STRLEN(REPLACE(?targetMotifMatchCigarO67883MF_02128419, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1429), '}'), '')))), '[^-]', ''))) AS ?step2430) .
BIND(((?step2430 + ?targetMotifMatchRegionMatchBeginPositionMF_02128420) - 1) AS ?thisPositionOn142) .
BIND(?thisPositionOn142 AS ?thisPositionOn143) .
BIND(?this AS ?pfs1t431) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn142))) AS ?pfsb138) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn143))) AS ?pfse139) .
FILTER (REGEX('[WYF]', SUBSTR(?thisSequenceValue, ?thisPositionOn142, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_02128a137')) AS ?annotation137) .
BIND(?this AS ?pfs136) .
}
}
"xsd:string |
