| http://purl.uniprot.org/unirules/MF_03124#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:827701 up:source unirule:MF_03124 .
_:827702 up:source unirule:MF_03124 .
_:827703 up:source unirule:MF_03124 .
_:827704 up:source unirule:MF_03124 .
_:827705 up:source unirule:MF_03124 .
_:827706 up:source unirule:MF_03124 .
_:827707 up:source unirule:MF_03124 .
_:827708 up:source unirule:MF_03124 .
_:827709 up:source unirule:MF_03124 .
_:827710 up:source unirule:MF_03124 .
_:827711 up:source unirule:MF_03124 .
_:827712 up:source unirule:MF_03124 .
_:827713 up:source unirule:MF_03124 .
_:827714 up:source unirule:MF_03124 .
_:827715 up:source unirule:MF_03124 .
_:827716 up:source unirule:MF_03124 .
_:827717 up:ecName '2.3.1.35' ;
up:fullName 'Glutamate N-acetyltransferase' ;
up:shortName 'GAT' ;
rdf:type up:Structured_Name .
_:827718 up:fullName 'Ornithine acetyltransferase' ;
up:shortName 'OATase' ;
rdf:type up:Structured_Name .
_:827719 up:fullName 'Ornithine transacetylase' ;
rdf:type up:Structured_Name .
_:827720 up:source unirule:MF_03124 .
_:827721 up:ecName '2.3.1.1' ;
up:fullName 'Amino-acid acetyltransferase' ;
rdf:type up:Structured_Name .
_:827722 up:fullName 'N-acetylglutamate synthase' ;
up:shortName 'AGS' ;
rdf:type up:Structured_Name .
_:827723 up:source unirule:MF_03124 .
_:827724 up:fullName 'Arginine biosynthesis bifunctional protein ArgJ alpha chain' ;
rdf:type up:Structured_Name .
_:827725 up:source unirule:MF_03124 .
_:827726 up:fullName 'Arginine biosynthesis bifunctional protein ArgJ beta chain' ;
rdf:type up:Structured_Name .
_:827727 up:source unirule:MF_03124 .
_:827728 up:ecName '2.3.1.35' ;
up:fullName 'Glutamate N-acetyltransferase' ;
up:shortName 'GAT' ;
rdf:type up:Structured_Name .
_:827729 up:fullName 'Ornithine acetyltransferase' ;
up:shortName 'OATase' ;
rdf:type up:Structured_Name .
_:827730 up:fullName 'Ornithine transacetylase' ;
rdf:type up:Structured_Name .
_:827731 up:source unirule:MF_03124 .
_:827732 up:ecName '2.3.1.1' ;
up:fullName 'Amino-acid acetyltransferase' ;
rdf:type up:Structured_Name .
_:827733 up:fullName 'N-acetylglutamate synthase' ;
up:shortName 'AGS' ;
rdf:type up:Structured_Name .
_:827734 up:source unirule:MF_03124 .
_:827735 up:fullName 'Arginine biosynthesis bifunctional protein ArgJ alpha chain' ;
rdf:type up:Structured_Name .
_:827736 up:source unirule:MF_03124 .
_:827737 up:fullName 'Arginine biosynthesis bifunctional protein ArgJ beta chain' ;
rdf:type up:Structured_Name .
_:827738 up:source unirule:MF_03124 .
_:827739 up:source unirule:MF_03124 .
_:827740 up:source unirule:MF_03124 .
_:827741 up:source unirule:MF_03124 .
_:827742 up:source unirule:MF_03124 .
_:827743 up:source unirule:MF_03124 .
_:827744 up:source unirule:MF_03124 .
_:827745 up:source unirule:MF_03124 .
_:827746 up:source unirule:MF_03124 .
_:827747 up:source unirule:MF_03124 .
_:827748 up:source unirule:MF_03124 .
_:827749 up:source unirule:MF_03124 .
_:827750 up:source unirule:MF_03124 .
_:827751 up:source unirule:MF_03124 .
_:827752 up:source unirule:MF_03124 .
_:827753 up:source unirule:MF_03124 .
_:827754 up:source unirule:MF_03124 .
_:827755 up:source unirule:MF_03124 .
_:827756 up:source unirule:MF_03124 .
_:827757 up:source unirule:MF_03124 .
_:827758 up:source unirule:MF_03124 .
?this up:annotation ?annotation0 ,
?annotation1 ,
?annotation3 ,
?annotation5 ,
?annotation6 ,
?annotation7 ,
?annotation8 ;
up:classifiedWith GO:0004042 ,
GO:0004358 ,
GO:0006526 ,
keyword:12 ,
keyword:28 ,
keyword:511 ,
keyword:55 ,
keyword:68 ,
keyword:808 ;
up:component ?namedpart11 ,
?namedpart12 ,
?namedpart15 ,
?namedpart16 ;
up:domain ?namedpart9 ,
?namedpart10 ,
?namedpart13 ,
?namedpart14 .
?annotation0 a up:Function_Annotation ;
rdfs:comment 'Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of acetylglutamate from glutamate and acetyl-CoA, and of ornithine by transacetylation between acetylornithine and glutamate.' .
?annotation1 up:activity ?activity2 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity2 up:catalyticActivity ;
up:enzymeClass .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 a up:Pathway_Annotation ;
rdfs:comment 'Amino-acid biosynthesis; L-arginine biosynthesis; L-ornithine and N-acetyl-L-glutamate from L-glutamate and N(2)-acetyl-L-ornithine (cyclic): step 1/1.' .
?annotation6 a up:Pathway_Annotation ;
rdfs:comment 'Amino-acid biosynthesis; L-arginine biosynthesis; N(2)-acetyl-L-ornithine from L-glutamate: step 1/4.' .
?annotation7 a up:Subunit_Annotation ;
rdfs:comment 'Heterodimer of an alpha and a beta chain.' .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the ArgJ family.' .
?namedpart9 up:alternativeName _:827718 ,
_:827719 ;
up:recommendedName _:827717 .
?namedpart10 up:alternativeName _:827722 ;
up:recommendedName _:827721 .
?namedpart11 up:recommendedName _:827724 .
?namedpart12 up:recommendedName _:827726 .
?namedpart13 up:alternativeName _:827729 ,
_:827730 ;
up:recommendedName _:827728 .
?namedpart14 up:alternativeName _:827733 ;
up:recommendedName _:827732 .
?namedpart15 up:recommendedName _:827735 .
?namedpart16 up:recommendedName _:827737 .
?case17 up:classifiedWith GO:0009507 ,
keyword:150 ,
keyword:934 .
?case18 up:classifiedWith keyword:809 .
?case19 up:classifiedWith GO:0005759 ,
keyword:496 .
?pfs20 up:annotation ?annotation21 .
?annotation21 faldo:begin ?pfsb22 ;
faldo:end ?pfse23 ;
rdf:type up:Chain_Annotation ;
rdfs:comment 'Arginine biosynthesis bifunctional protein ArgJ beta chain' .
?pfsb22 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfse23 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?pfs26 up:annotation ?annotation27 .
?annotation27 faldo:begin ?pfsb28 ;
faldo:end ?pfse29 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Cleavage; by autolysis' .
?pfsb28 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?pfse29 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?pfs32 up:annotation ?annotation33 .
?annotation33 faldo:begin ?pfsb34 ;
faldo:end ?pfse35 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Nucleophile' .
?pfsb34 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?pfse35 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?pfs38 up:annotation ?annotation39 .
?annotation39 faldo:begin ?pfsb40 ;
faldo:end ?pfse41 ;
up:ligand ?ligand42 ;
rdf:type up:Binding_Site_Annotation .
?pfsb40 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?pfse41 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?ligand42 rdfs:subClassOf ?molecule43 .
?molecule43 rdfs:label 'substrate' .
?pfs46 up:annotation ?annotation47 .
?annotation47 faldo:begin ?pfsb48 ;
faldo:end ?pfse49 ;
up:ligand ?ligand50 ;
rdf:type up:Binding_Site_Annotation .
?pfsb48 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?pfse49 faldo:position ?thisPositionOn53 ;
rdf:type faldo:ExactPosition .
?ligand50 rdfs:subClassOf ?molecule51 .
?molecule51 rdfs:label 'substrate' .
?pfs54 up:annotation ?annotation55 .
?annotation55 faldo:begin ?pfsb56 ;
faldo:end ?pfse57 ;
up:ligand ?ligand58 ;
rdf:type up:Binding_Site_Annotation .
?pfsb56 faldo:position ?thisPositionOn60 ;
rdf:type faldo:ExactPosition .
?pfse57 faldo:position ?thisPositionOn61 ;
rdf:type faldo:ExactPosition .
?ligand58 rdfs:subClassOf ?molecule59 .
?molecule59 rdfs:label 'substrate' .
?pfs62 up:annotation ?annotation63 .
?annotation63 faldo:begin ?pfsb64 ;
faldo:end ?pfse65 ;
up:ligand ?ligand66 ;
rdf:type up:Binding_Site_Annotation .
?pfsb64 faldo:position ?thisPositionOn68 ;
rdf:type faldo:ExactPosition .
?pfse65 faldo:position ?thisPositionOn69 ;
rdf:type faldo:ExactPosition .
?ligand66 rdfs:subClassOf ?molecule67 .
?molecule67 rdfs:label 'substrate' .
?pfs70 up:annotation ?annotation71 .
?annotation71 faldo:begin ?pfsb72 ;
faldo:end ?pfse73 ;
up:ligand ?ligand74 ;
rdf:type up:Binding_Site_Annotation .
?pfsb72 faldo:position ?thisPositionOn76 ;
rdf:type faldo:ExactPosition .
?pfse73 faldo:position ?thisPositionOn77 ;
rdf:type faldo:ExactPosition .
?ligand74 rdfs:subClassOf ?molecule75 .
?molecule75 rdfs:label 'substrate' .
?pfs78 up:annotation ?annotation79 .
?annotation79 faldo:begin ?pfsb80 ;
faldo:end ?pfse81 ;
up:ligand ?ligand82 ;
rdf:type up:Binding_Site_Annotation .
?pfsb80 faldo:position ?thisPositionOn84 ;
rdf:type faldo:ExactPosition .
?pfse81 faldo:position ?thisPositionOn85 ;
rdf:type faldo:ExactPosition .
?ligand82 rdfs:subClassOf ?molecule83 .
?molecule83 rdfs:label 'substrate' .
?pfs86 up:annotation ?annotation87 .
?annotation87 faldo:begin ?pfsb88 ;
faldo:end ?pfse89 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Involved in the stabilization of negative charge on the oxyanion by the formation of the oxyanion hole' .
?pfsb88 faldo:position ?thisPositionOn90 ;
rdf:type faldo:ExactPosition .
?pfse89 faldo:position ?thisPositionOn91 ;
rdf:type faldo:ExactPosition .
?pfs92 up:annotation ?annotation93 .
?annotation93 faldo:begin ?pfsb94 ;
faldo:end ?pfse95 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Involved in the stabilization of negative charge on the oxyanion by the formation of the oxyanion hole' .
?pfsb94 faldo:position ?thisPositionOn96 ;
rdf:type faldo:ExactPosition .
?pfse95 faldo:position ?thisPositionOn97 ;
rdf:type faldo:ExactPosition .
?pfs98 up:annotation ?annotation99 .
?annotation99 faldo:begin ?pfsb100 ;
faldo:end ?pfse101 ;
rdf:type up:Chain_Annotation ;
rdfs:comment 'Arginine biosynthesis bifunctional protein ArgJ alpha chain' .
?pfsb100 faldo:position ?thisPositionOn102 ;
rdf:type faldo:ExactPosition .
?pfse101 faldo:position ?thisPositionOn103 ;
rdf:type faldo:ExactPosition .
?pfs104 up:annotation ?annotation105 .
?annotation105 faldo:begin ?pfsb106 ;
faldo:end ?pfse107 ;
rdf:type up:Transit_Peptide_Annotation ;
rdfs:comment 'Mitochondrion' .
?pfsb106 faldo:position ?thisPositionOn108 ;
rdf:type faldo:ExactPosition .
?pfse107 faldo:position ?thisPositionOn109 ;
rdf:type faldo:ExactPosition .
?pfs110 up:annotation ?annotation111 .
?annotation111 faldo:begin ?pfsb112 ;
faldo:end ?pfse113 ;
rdf:type up:Chain_Annotation ;
rdfs:comment 'Arginine biosynthesis bifunctional protein ArgJ alpha chain' .
?pfsb112 faldo:position ?thisPositionOn114 ;
rdf:type faldo:ExactPosition .
?pfse113 faldo:position ?thisPositionOn115 ;
rdf:type faldo:ExactPosition .
_:827759 a rdf:Statement ;
up:attribution _:827701 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation0 .
_:827760 a rdf:Statement ;
up:attribution _:827702 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation1 .
_:827761 a rdf:Statement ;
up:attribution _:827703 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:827762 a rdf:Statement ;
up:attribution _:827704 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:827763 a rdf:Statement ;
up:attribution _:827705 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:827764 a rdf:Statement ;
up:attribution _:827706 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:827765 a rdf:Statement ;
up:attribution _:827707 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:827766 a rdf:Statement ;
up:attribution _:827708 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:12 .
_:827767 a rdf:Statement ;
up:attribution _:827709 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:28 .
_:827768 a rdf:Statement ;
up:attribution _:827710 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:55 .
_:827769 a rdf:Statement ;
up:attribution _:827711 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:68 .
_:827770 a rdf:Statement ;
up:attribution _:827712 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:511 .
_:827771 a rdf:Statement ;
up:attribution _:827713 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:827772 a rdf:Statement ;
up:attribution _:827714 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006526 .
_:827773 a rdf:Statement ;
up:attribution _:827715 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004358 .
_:827774 a rdf:Statement ;
up:attribution _:827716 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004042 .
_:827775 a rdf:Statement ;
up:attribution _:827720 ;
rdf:subject ?this ;
rdf:predicate up:domain ;
rdf:object ?namedpart9 .
_:827776 a rdf:Statement ;
up:attribution _:827723 ;
rdf:subject ?this ;
rdf:predicate up:domain ;
rdf:object ?namedpart10 .
_:827777 a rdf:Statement ;
up:attribution _:827725 ;
rdf:subject ?this ;
rdf:predicate up:component ;
rdf:object ?namedpart11 .
_:827778 a rdf:Statement ;
up:attribution _:827727 ;
rdf:subject ?this ;
rdf:predicate up:component ;
rdf:object ?namedpart12 .
_:827779 a rdf:Statement ;
up:attribution _:827731 ;
rdf:subject ?this ;
rdf:predicate up:domain ;
rdf:object ?namedpart13 .
_:827780 a rdf:Statement ;
up:attribution _:827734 ;
rdf:subject ?this ;
rdf:predicate up:domain ;
rdf:object ?namedpart14 .
_:827781 a rdf:Statement ;
up:attribution _:827736 ;
rdf:subject ?this ;
rdf:predicate up:component ;
rdf:object ?namedpart15 .
_:827782 a rdf:Statement ;
up:attribution _:827738 ;
rdf:subject ?this ;
rdf:predicate up:component ;
rdf:object ?namedpart16 .
_:827783 a rdf:Statement ;
up:attribution _:827739 ;
rdf:subject ?case17 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:150 .
_:827784 a rdf:Statement ;
up:attribution _:827740 ;
rdf:subject ?case17 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:934 .
_:827785 a rdf:Statement ;
up:attribution _:827741 ;
rdf:subject ?case17 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009507 .
_:827786 a rdf:Statement ;
up:attribution _:827742 ;
rdf:subject ?case18 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:809 .
_:827787 a rdf:Statement ;
up:attribution _:827743 ;
rdf:subject ?case19 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:496 .
_:827788 a rdf:Statement ;
up:attribution _:827744 ;
rdf:subject ?case19 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005759 .
_:827789 a rdf:Statement ;
up:source unirule:MF_03124 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:827790 a rdf:Statement ;
up:attribution _:827745 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:827791 a rdf:Statement ;
up:source unirule:MF_03124 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:827792 a rdf:Statement ;
up:attribution _:827746 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:827793 a rdf:Statement ;
up:source unirule:MF_03124 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:827794 a rdf:Statement ;
up:attribution _:827747 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:827795 a rdf:Statement ;
up:source unirule:MF_03124 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:827796 a rdf:Statement ;
up:attribution _:827748 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:827797 a rdf:Statement ;
up:source unirule:MF_03124 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
_:827798 a rdf:Statement ;
up:attribution _:827749 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
_:827799 a rdf:Statement ;
up:source unirule:MF_03124 ;
rdf:subject ?pfs54 ;
rdf:predicate up:annotation ;
rdf:object ?annotation55 .
_:827800 a rdf:Statement ;
up:attribution _:827750 ;
rdf:subject ?pfs54 ;
rdf:predicate up:annotation ;
rdf:object ?annotation55 .
_:827801 a rdf:Statement ;
up:source unirule:MF_03124 ;
rdf:subject ?pfs62 ;
rdf:predicate up:annotation ;
rdf:object ?annotation63 .
_:827802 a rdf:Statement ;
up:attribution _:827751 ;
rdf:subject ?pfs62 ;
rdf:predicate up:annotation ;
rdf:object ?annotation63 .
_:827803 a rdf:Statement ;
up:source unirule:MF_03124 ;
rdf:subject ?pfs70 ;
rdf:predicate up:annotation ;
rdf:object ?annotation71 .
_:827804 a rdf:Statement ;
up:attribution _:827752 ;
rdf:subject ?pfs70 ;
rdf:predicate up:annotation ;
rdf:object ?annotation71 .
_:827805 a rdf:Statement ;
up:source unirule:MF_03124 ;
rdf:subject ?pfs78 ;
rdf:predicate up:annotation ;
rdf:object ?annotation79 .
_:827806 a rdf:Statement ;
up:attribution _:827753 ;
rdf:subject ?pfs78 ;
rdf:predicate up:annotation ;
rdf:object ?annotation79 .
_:827807 a rdf:Statement ;
up:source unirule:MF_03124 ;
rdf:subject ?pfs86 ;
rdf:predicate up:annotation ;
rdf:object ?annotation87 .
_:827808 a rdf:Statement ;
up:attribution _:827754 ;
rdf:subject ?pfs86 ;
rdf:predicate up:annotation ;
rdf:object ?annotation87 .
_:827809 a rdf:Statement ;
up:source unirule:MF_03124 ;
rdf:subject ?pfs92 ;
rdf:predicate up:annotation ;
rdf:object ?annotation93 .
_:827810 a rdf:Statement ;
up:attribution _:827755 ;
rdf:subject ?pfs92 ;
rdf:predicate up:annotation ;
rdf:object ?annotation93 .
_:827811 a rdf:Statement ;
up:source unirule:MF_03124 ;
rdf:subject ?pfs98 ;
rdf:predicate up:annotation ;
rdf:object ?annotation99 .
_:827812 a rdf:Statement ;
up:attribution _:827756 ;
rdf:subject ?pfs98 ;
rdf:predicate up:annotation ;
rdf:object ?annotation99 .
_:827813 a rdf:Statement ;
up:source unirule:MF_03124 ;
rdf:subject ?pfs104 ;
rdf:predicate up:annotation ;
rdf:object ?annotation105 .
_:827814 a rdf:Statement ;
up:attribution _:827757 ;
rdf:subject ?pfs104 ;
rdf:predicate up:annotation ;
rdf:object ?annotation105 .
_:827815 a rdf:Statement ;
up:source unirule:MF_03124 ;
rdf:subject ?pfs110 ;
rdf:predicate up:annotation ;
rdf:object ?annotation111 .
_:827816 a rdf:Statement ;
up:attribution _:827758 ;
rdf:subject ?pfs110 ;
rdf:predicate up:annotation ;
rdf:object ?annotation111 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_03124
#Rule MF_03124 Created by:? on:2012-08-22 Modified by:Catherine Rivoire on:2025-06-12
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01106 .
?thisOrganism rdfs:subClassOf+ taxon:2759 .
BIND(URI(CONCAT(STR(?this), '#MF_03124a0')) AS ?annotation0) .
BIND(URI(CONCAT(STR(?this), '#MF_03124a1')) AS ?annotation1) .
BIND(URI(CONCAT(STR(?this), '#MF_03124a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_03124a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_03124a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_03124a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_03124a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_03124a9')) AS ?namedpart9) .
BIND(URI(CONCAT(STR(?this), '#MF_03124a10')) AS ?namedpart10) .
BIND(URI(CONCAT(STR(?this), '#MF_03124a11')) AS ?namedpart11) .
BIND(URI(CONCAT(STR(?this), '#MF_03124a12')) AS ?namedpart12) .
BIND(URI(CONCAT(STR(?this), '#MF_03124a13')) AS ?namedpart13) .
BIND(URI(CONCAT(STR(?this), '#MF_03124a14')) AS ?namedpart14) .
BIND(URI(CONCAT(STR(?this), '#MF_03124a15')) AS ?namedpart15) .
BIND(URI(CONCAT(STR(?this), '#MF_03124a16')) AS ?namedpart16) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch120 faldo:location ?templateMotifSequenceMatchRegionQ04728121 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ04728123 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ04728MF_01106116 .
?templateMotifSequenceMatchRegionQ04728121 faldo:begin ?templateMotifSequenceMatchBeginQ04728122 .
?templateMotifSequenceMatchBeginQ04728122 faldo:position ?templateMotifSequenceMatchBeginPositionQ04728117 ;
faldo:reference isoform:Q04728-1 .
?templateMotifSequenceProfileAlignmentOperationQ04728123 edam:has_input signature:MF_01106 ;
rdf:type edam:operation_0300 .
?targetMotifMatch124 faldo:location ?targetMotifMatchRegionMatch125 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01106127 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ04728MF_01106118 .
?targetMotifMatchRegionMatch125 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01106126 .
?targetMotifMatchRegionMatchBeginMF_01106126 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01106119 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01106127 edam:has_input signature:MF_01106 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ04728MF_01106116, 1, (STRLEN(?templateMotifCigarQ04728MF_01106116) - STRLEN(REPLACE(?templateMotifCigarQ04728MF_01106116, CONCAT('^(?:-*[^-]){', STR(((215 - ?templateMotifSequenceMatchBeginPositionQ04728117) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1128) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ04728MF_01106118, 1, (STRLEN(?targetMotifMatchCigarQ04728MF_01106118) - STRLEN(REPLACE(?targetMotifMatchCigarQ04728MF_01106118, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1128), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ04728MF_01106118, 1, (STRLEN(?targetMotifMatchCigarQ04728MF_01106118) - STRLEN(REPLACE(?targetMotifMatchCigarQ04728MF_01106118, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1128), '}'), '')))), '[^-]', ''))) AS ?step2129) .
BIND(((?step2129 + ?targetMotifMatchRegionMatchBeginPositionMF_01106119) - 1) AS ?thisPositionOn24) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn25) .
BIND(?this AS ?pfs1t130) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb22) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse23) .
FILTER ((BOUND(?thisPositionOn24) && BOUND(?thisPositionOn25))) .
BIND(URI(CONCAT(STR(?this), '#MF_03124a21')) AS ?annotation21) .
BIND(?this AS ?pfs20) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch135 faldo:location ?templateMotifSequenceMatchRegionQ04728136 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ04728138 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ04728MF_01106131 .
?templateMotifSequenceMatchRegionQ04728136 faldo:begin ?templateMotifSequenceMatchBeginQ04728137 .
?templateMotifSequenceMatchBeginQ04728137 faldo:position ?templateMotifSequenceMatchBeginPositionQ04728132 ;
faldo:reference isoform:Q04728-1 .
?templateMotifSequenceProfileAlignmentOperationQ04728138 edam:has_input signature:MF_01106 ;
rdf:type edam:operation_0300 .
?targetMotifMatch139 faldo:location ?targetMotifMatchRegionMatch140 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01106142 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ04728MF_01106133 .
?targetMotifMatchRegionMatch140 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01106141 .
?targetMotifMatchRegionMatchBeginMF_01106141 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01106134 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01106142 edam:has_input signature:MF_01106 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ04728MF_01106131, 1, (STRLEN(?templateMotifCigarQ04728MF_01106131) - STRLEN(REPLACE(?templateMotifCigarQ04728MF_01106131, CONCAT('^(?:-*[^-]){', STR(((214 - ?templateMotifSequenceMatchBeginPositionQ04728132) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1143) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ04728MF_01106133, 1, (STRLEN(?targetMotifMatchCigarQ04728MF_01106133) - STRLEN(REPLACE(?targetMotifMatchCigarQ04728MF_01106133, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1143), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ04728MF_01106133, 1, (STRLEN(?targetMotifMatchCigarQ04728MF_01106133) - STRLEN(REPLACE(?targetMotifMatchCigarQ04728MF_01106133, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1143), '}'), '')))), '[^-]', ''))) AS ?step2144) .
BIND(((?step2144 + ?targetMotifMatchRegionMatchBeginPositionMF_01106134) - 1) AS ?thisPositionOn30) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ04728MF_01106131, 1, (STRLEN(?templateMotifCigarQ04728MF_01106131) - STRLEN(REPLACE(?templateMotifCigarQ04728MF_01106131, CONCAT('^(?:-*[^-]){', STR(((215 - ?templateMotifSequenceMatchBeginPositionQ04728132) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1145) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ04728MF_01106133, 1, (STRLEN(?targetMotifMatchCigarQ04728MF_01106133) - STRLEN(REPLACE(?targetMotifMatchCigarQ04728MF_01106133, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1145), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ04728MF_01106133, 1, (STRLEN(?targetMotifMatchCigarQ04728MF_01106133) - STRLEN(REPLACE(?targetMotifMatchCigarQ04728MF_01106133, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1145), '}'), '')))), '[^-]', ''))) AS ?step2146) .
BIND(((?step2146 + ?targetMotifMatchRegionMatchBeginPositionMF_01106134) - 1) AS ?thisPositionOn31) .
BIND(?this AS ?pfs1t147) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb28) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse29) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn30, (?thisPositionOn31 - ?thisPositionOn30)) = 'AT')) .
BIND(URI(CONCAT(STR(?this), '#MF_03124a27')) AS ?annotation27) .
BIND(?this AS ?pfs26) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch152 faldo:location ?templateMotifSequenceMatchRegionP9WPZ3153 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WPZ3155 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WPZ3MF_01106148 .
?templateMotifSequenceMatchRegionP9WPZ3153 faldo:begin ?templateMotifSequenceMatchBeginP9WPZ3154 .
?templateMotifSequenceMatchBeginP9WPZ3154 faldo:position ?templateMotifSequenceMatchBeginPositionP9WPZ3149 ;
faldo:reference isoform:P9WPZ3-1 .
?templateMotifSequenceProfileAlignmentOperationP9WPZ3155 edam:has_input signature:MF_01106 ;
rdf:type edam:operation_0300 .
?targetMotifMatch156 faldo:location ?targetMotifMatchRegionMatch157 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01106159 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WPZ3MF_01106150 .
?targetMotifMatchRegionMatch157 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01106158 .
?targetMotifMatchRegionMatchBeginMF_01106158 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01106151 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01106159 edam:has_input signature:MF_01106 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WPZ3MF_01106148, 1, (STRLEN(?templateMotifCigarP9WPZ3MF_01106148) - STRLEN(REPLACE(?templateMotifCigarP9WPZ3MF_01106148, CONCAT('^(?:-*[^-]){', STR(((200 - ?templateMotifSequenceMatchBeginPositionP9WPZ3149) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1160) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106150, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106150) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106150, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1160), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106150, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106150) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106150, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1160), '}'), '')))), '[^-]', ''))) AS ?step2161) .
BIND(((?step2161 + ?targetMotifMatchRegionMatchBeginPositionMF_01106151) - 1) AS ?thisPositionOn36) .
BIND(?thisPositionOn36 AS ?thisPositionOn37) .
BIND(?this AS ?pfs2t162) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfsb34) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfse35) .
FILTER (REGEX('[TS]', SUBSTR(?thisSequenceValue, ?thisPositionOn36, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_03124a33')) AS ?annotation33) .
BIND(?this AS ?pfs32) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch167 faldo:location ?templateMotifSequenceMatchRegionP9WPZ3168 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WPZ3170 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WPZ3MF_01106163 .
?templateMotifSequenceMatchRegionP9WPZ3168 faldo:begin ?templateMotifSequenceMatchBeginP9WPZ3169 .
?templateMotifSequenceMatchBeginP9WPZ3169 faldo:position ?templateMotifSequenceMatchBeginPositionP9WPZ3164 ;
faldo:reference isoform:P9WPZ3-1 .
?templateMotifSequenceProfileAlignmentOperationP9WPZ3170 edam:has_input signature:MF_01106 ;
rdf:type edam:operation_0300 .
?targetMotifMatch171 faldo:location ?targetMotifMatchRegionMatch172 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01106174 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WPZ3MF_01106165 .
?targetMotifMatchRegionMatch172 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01106173 .
?targetMotifMatchRegionMatchBeginMF_01106173 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01106166 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01106174 edam:has_input signature:MF_01106 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WPZ3MF_01106163, 1, (STRLEN(?templateMotifCigarP9WPZ3MF_01106163) - STRLEN(REPLACE(?templateMotifCigarP9WPZ3MF_01106163, CONCAT('^(?:-*[^-]){', STR(((166 - ?templateMotifSequenceMatchBeginPositionP9WPZ3164) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1175) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106165, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106165) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106165, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1175), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106165, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106165) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106165, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1175), '}'), '')))), '[^-]', ''))) AS ?step2176) .
BIND(((?step2176 + ?targetMotifMatchRegionMatchBeginPositionMF_01106166) - 1) AS ?thisPositionOn44) .
BIND(?thisPositionOn44 AS ?thisPositionOn45) .
BIND(?this AS ?pfs2t177) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfsb40) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfse41) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn44, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_03124a39')) AS ?annotation39) .
BIND(?this AS ?pfs38) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch182 faldo:location ?templateMotifSequenceMatchRegionP9WPZ3183 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WPZ3185 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WPZ3MF_01106178 .
?templateMotifSequenceMatchRegionP9WPZ3183 faldo:begin ?templateMotifSequenceMatchBeginP9WPZ3184 .
?templateMotifSequenceMatchBeginP9WPZ3184 faldo:position ?templateMotifSequenceMatchBeginPositionP9WPZ3179 ;
faldo:reference isoform:P9WPZ3-1 .
?templateMotifSequenceProfileAlignmentOperationP9WPZ3185 edam:has_input signature:MF_01106 ;
rdf:type edam:operation_0300 .
?targetMotifMatch186 faldo:location ?targetMotifMatchRegionMatch187 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01106189 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WPZ3MF_01106180 .
?targetMotifMatchRegionMatch187 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01106188 .
?targetMotifMatchRegionMatchBeginMF_01106188 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01106181 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01106189 edam:has_input signature:MF_01106 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WPZ3MF_01106178, 1, (STRLEN(?templateMotifCigarP9WPZ3MF_01106178) - STRLEN(REPLACE(?templateMotifCigarP9WPZ3MF_01106178, CONCAT('^(?:-*[^-]){', STR(((189 - ?templateMotifSequenceMatchBeginPositionP9WPZ3179) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1190) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106180, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106180) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106180, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1190), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106180, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106180) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106180, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1190), '}'), '')))), '[^-]', ''))) AS ?step2191) .
BIND(((?step2191 + ?targetMotifMatchRegionMatchBeginPositionMF_01106181) - 1) AS ?thisPositionOn52) .
BIND(?thisPositionOn52 AS ?thisPositionOn53) .
BIND(?this AS ?pfs2t192) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfsb48) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfse49) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn52, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_03124a47')) AS ?annotation47) .
BIND(?this AS ?pfs46) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch197 faldo:location ?templateMotifSequenceMatchRegionP9WPZ3198 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WPZ3200 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WPZ3MF_01106193 .
?templateMotifSequenceMatchRegionP9WPZ3198 faldo:begin ?templateMotifSequenceMatchBeginP9WPZ3199 .
?templateMotifSequenceMatchBeginP9WPZ3199 faldo:position ?templateMotifSequenceMatchBeginPositionP9WPZ3194 ;
faldo:reference isoform:P9WPZ3-1 .
?templateMotifSequenceProfileAlignmentOperationP9WPZ3200 edam:has_input signature:MF_01106 ;
rdf:type edam:operation_0300 .
?targetMotifMatch201 faldo:location ?targetMotifMatchRegionMatch202 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01106204 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WPZ3MF_01106195 .
?targetMotifMatchRegionMatch202 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01106203 .
?targetMotifMatchRegionMatchBeginMF_01106203 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01106196 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01106204 edam:has_input signature:MF_01106 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WPZ3MF_01106193, 1, (STRLEN(?templateMotifCigarP9WPZ3MF_01106193) - STRLEN(REPLACE(?templateMotifCigarP9WPZ3MF_01106193, CONCAT('^(?:-*[^-]){', STR(((200 - ?templateMotifSequenceMatchBeginPositionP9WPZ3194) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1205) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106195, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106195) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106195, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1205), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106195, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106195) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106195, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1205), '}'), '')))), '[^-]', ''))) AS ?step2206) .
BIND(((?step2206 + ?targetMotifMatchRegionMatchBeginPositionMF_01106196) - 1) AS ?thisPositionOn60) .
BIND(?thisPositionOn60 AS ?thisPositionOn61) .
BIND(?this AS ?pfs2t207) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfsb56) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfse57) .
FILTER (REGEX('[TS]', SUBSTR(?thisSequenceValue, ?thisPositionOn60, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_03124a55')) AS ?annotation55) .
BIND(?this AS ?pfs54) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch212 faldo:location ?templateMotifSequenceMatchRegionP9WPZ3213 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WPZ3215 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WPZ3MF_01106208 .
?templateMotifSequenceMatchRegionP9WPZ3213 faldo:begin ?templateMotifSequenceMatchBeginP9WPZ3214 .
?templateMotifSequenceMatchBeginP9WPZ3214 faldo:position ?templateMotifSequenceMatchBeginPositionP9WPZ3209 ;
faldo:reference isoform:P9WPZ3-1 .
?templateMotifSequenceProfileAlignmentOperationP9WPZ3215 edam:has_input signature:MF_01106 ;
rdf:type edam:operation_0300 .
?targetMotifMatch216 faldo:location ?targetMotifMatchRegionMatch217 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01106219 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WPZ3MF_01106210 .
?targetMotifMatchRegionMatch217 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01106218 .
?targetMotifMatchRegionMatchBeginMF_01106218 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01106211 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01106219 edam:has_input signature:MF_01106 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WPZ3MF_01106208, 1, (STRLEN(?templateMotifCigarP9WPZ3MF_01106208) - STRLEN(REPLACE(?templateMotifCigarP9WPZ3MF_01106208, CONCAT('^(?:-*[^-]){', STR(((280 - ?templateMotifSequenceMatchBeginPositionP9WPZ3209) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1220) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106210, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106210) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106210, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1220), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106210, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106210) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106210, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1220), '}'), '')))), '[^-]', ''))) AS ?step2221) .
BIND(((?step2221 + ?targetMotifMatchRegionMatchBeginPositionMF_01106211) - 1) AS ?thisPositionOn68) .
BIND(?thisPositionOn68 AS ?thisPositionOn69) .
BIND(?this AS ?pfs2t222) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn68))) AS ?pfsb64) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn69))) AS ?pfse65) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn68, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_03124a63')) AS ?annotation63) .
BIND(?this AS ?pfs62) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch227 faldo:location ?templateMotifSequenceMatchRegionP9WPZ3228 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WPZ3230 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WPZ3MF_01106223 .
?templateMotifSequenceMatchRegionP9WPZ3228 faldo:begin ?templateMotifSequenceMatchBeginP9WPZ3229 .
?templateMotifSequenceMatchBeginP9WPZ3229 faldo:position ?templateMotifSequenceMatchBeginPositionP9WPZ3224 ;
faldo:reference isoform:P9WPZ3-1 .
?templateMotifSequenceProfileAlignmentOperationP9WPZ3230 edam:has_input signature:MF_01106 ;
rdf:type edam:operation_0300 .
?targetMotifMatch231 faldo:location ?targetMotifMatchRegionMatch232 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01106234 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WPZ3MF_01106225 .
?targetMotifMatchRegionMatch232 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01106233 .
?targetMotifMatchRegionMatchBeginMF_01106233 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01106226 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01106234 edam:has_input signature:MF_01106 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WPZ3MF_01106223, 1, (STRLEN(?templateMotifCigarP9WPZ3MF_01106223) - STRLEN(REPLACE(?templateMotifCigarP9WPZ3MF_01106223, CONCAT('^(?:-*[^-]){', STR(((399 - ?templateMotifSequenceMatchBeginPositionP9WPZ3224) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1235) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106225, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106225) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106225, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1235), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106225, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106225) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106225, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1235), '}'), '')))), '[^-]', ''))) AS ?step2236) .
BIND(((?step2236 + ?targetMotifMatchRegionMatchBeginPositionMF_01106226) - 1) AS ?thisPositionOn76) .
BIND(?thisPositionOn76 AS ?thisPositionOn77) .
BIND(?this AS ?pfs2t237) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn76))) AS ?pfsb72) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn77))) AS ?pfse73) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn76, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_03124a71')) AS ?annotation71) .
BIND(?this AS ?pfs70) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch242 faldo:location ?templateMotifSequenceMatchRegionP9WPZ3243 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WPZ3245 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WPZ3MF_01106238 .
?templateMotifSequenceMatchRegionP9WPZ3243 faldo:begin ?templateMotifSequenceMatchBeginP9WPZ3244 .
?templateMotifSequenceMatchBeginP9WPZ3244 faldo:position ?templateMotifSequenceMatchBeginPositionP9WPZ3239 ;
faldo:reference isoform:P9WPZ3-1 .
?templateMotifSequenceProfileAlignmentOperationP9WPZ3245 edam:has_input signature:MF_01106 ;
rdf:type edam:operation_0300 .
?targetMotifMatch246 faldo:location ?targetMotifMatchRegionMatch247 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01106249 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WPZ3MF_01106240 .
?targetMotifMatchRegionMatch247 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01106248 .
?targetMotifMatchRegionMatchBeginMF_01106248 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01106241 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01106249 edam:has_input signature:MF_01106 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WPZ3MF_01106238, 1, (STRLEN(?templateMotifCigarP9WPZ3MF_01106238) - STRLEN(REPLACE(?templateMotifCigarP9WPZ3MF_01106238, CONCAT('^(?:-*[^-]){', STR(((404 - ?templateMotifSequenceMatchBeginPositionP9WPZ3239) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1250) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106240, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106240) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106240, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1250), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106240, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106240) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106240, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1250), '}'), '')))), '[^-]', ''))) AS ?step2251) .
BIND(((?step2251 + ?targetMotifMatchRegionMatchBeginPositionMF_01106241) - 1) AS ?thisPositionOn84) .
BIND(?thisPositionOn84 AS ?thisPositionOn85) .
BIND(?this AS ?pfs2t252) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn84))) AS ?pfsb80) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn85))) AS ?pfse81) .
FILTER (REGEX('[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn84, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_03124a79')) AS ?annotation79) .
BIND(?this AS ?pfs78) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch257 faldo:location ?templateMotifSequenceMatchRegionP9WPZ3258 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WPZ3260 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WPZ3MF_01106253 .
?templateMotifSequenceMatchRegionP9WPZ3258 faldo:begin ?templateMotifSequenceMatchBeginP9WPZ3259 .
?templateMotifSequenceMatchBeginP9WPZ3259 faldo:position ?templateMotifSequenceMatchBeginPositionP9WPZ3254 ;
faldo:reference isoform:P9WPZ3-1 .
?templateMotifSequenceProfileAlignmentOperationP9WPZ3260 edam:has_input signature:MF_01106 ;
rdf:type edam:operation_0300 .
?targetMotifMatch261 faldo:location ?targetMotifMatchRegionMatch262 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01106264 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WPZ3MF_01106255 .
?targetMotifMatchRegionMatch262 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01106263 .
?targetMotifMatchRegionMatchBeginMF_01106263 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01106256 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01106264 edam:has_input signature:MF_01106 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WPZ3MF_01106253, 1, (STRLEN(?templateMotifCigarP9WPZ3MF_01106253) - STRLEN(REPLACE(?templateMotifCigarP9WPZ3MF_01106253, CONCAT('^(?:-*[^-]){', STR(((127 - ?templateMotifSequenceMatchBeginPositionP9WPZ3254) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1265) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106255, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106255) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106255, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1265), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106255, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106255) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106255, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1265), '}'), '')))), '[^-]', ''))) AS ?step2266) .
BIND(((?step2266 + ?targetMotifMatchRegionMatchBeginPositionMF_01106256) - 1) AS ?thisPositionOn90) .
BIND(?thisPositionOn90 AS ?thisPositionOn91) .
BIND(?this AS ?pfs2t267) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn90))) AS ?pfsb88) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn91))) AS ?pfse89) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn90, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_03124a87')) AS ?annotation87) .
BIND(?this AS ?pfs86) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch272 faldo:location ?templateMotifSequenceMatchRegionP9WPZ3273 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WPZ3275 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WPZ3MF_01106268 .
?templateMotifSequenceMatchRegionP9WPZ3273 faldo:begin ?templateMotifSequenceMatchBeginP9WPZ3274 .
?templateMotifSequenceMatchBeginP9WPZ3274 faldo:position ?templateMotifSequenceMatchBeginPositionP9WPZ3269 ;
faldo:reference isoform:P9WPZ3-1 .
?templateMotifSequenceProfileAlignmentOperationP9WPZ3275 edam:has_input signature:MF_01106 ;
rdf:type edam:operation_0300 .
?targetMotifMatch276 faldo:location ?targetMotifMatchRegionMatch277 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01106279 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WPZ3MF_01106270 .
?targetMotifMatchRegionMatch277 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01106278 .
?targetMotifMatchRegionMatchBeginMF_01106278 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01106271 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01106279 edam:has_input signature:MF_01106 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WPZ3MF_01106268, 1, (STRLEN(?templateMotifCigarP9WPZ3MF_01106268) - STRLEN(REPLACE(?templateMotifCigarP9WPZ3MF_01106268, CONCAT('^(?:-*[^-]){', STR(((128 - ?templateMotifSequenceMatchBeginPositionP9WPZ3269) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1280) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106270, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106270) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106270, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1280), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106270, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106270) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106270, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1280), '}'), '')))), '[^-]', ''))) AS ?step2281) .
BIND(((?step2281 + ?targetMotifMatchRegionMatchBeginPositionMF_01106271) - 1) AS ?thisPositionOn96) .
BIND(?thisPositionOn96 AS ?thisPositionOn97) .
BIND(?this AS ?pfs2t282) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn96))) AS ?pfsb94) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn97))) AS ?pfse95) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn96, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_03124a93')) AS ?annotation93) .
BIND(?this AS ?pfs92) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch287 faldo:location ?templateMotifSequenceMatchRegionQ04728288 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ04728290 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ04728MF_01106283 .
?templateMotifSequenceMatchRegionQ04728288 faldo:begin ?templateMotifSequenceMatchBeginQ04728289 .
?templateMotifSequenceMatchBeginQ04728289 faldo:position ?templateMotifSequenceMatchBeginPositionQ04728284 ;
faldo:reference isoform:Q04728-1 .
?templateMotifSequenceProfileAlignmentOperationQ04728290 edam:has_input signature:MF_01106 ;
rdf:type edam:operation_0300 .
?targetMotifMatch291 faldo:location ?targetMotifMatchRegionMatch292 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01106294 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ04728MF_01106285 .
?targetMotifMatchRegionMatch292 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01106293 .
?targetMotifMatchRegionMatchBeginMF_01106293 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01106286 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01106294 edam:has_input signature:MF_01106 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:4930 .
})) .
BIND(1 AS ?thisPositionOn102) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ04728MF_01106283, 1, (STRLEN(?templateMotifCigarQ04728MF_01106283) - STRLEN(REPLACE(?templateMotifCigarQ04728MF_01106283, CONCAT('^(?:-*[^-]){', STR(((214 - ?templateMotifSequenceMatchBeginPositionQ04728284) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1295) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ04728MF_01106285, 1, (STRLEN(?targetMotifMatchCigarQ04728MF_01106285) - STRLEN(REPLACE(?targetMotifMatchCigarQ04728MF_01106285, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1295), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ04728MF_01106285, 1, (STRLEN(?targetMotifMatchCigarQ04728MF_01106285) - STRLEN(REPLACE(?targetMotifMatchCigarQ04728MF_01106285, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1295), '}'), '')))), '[^-]', ''))) AS ?step2296) .
BIND(((?step2296 + ?targetMotifMatchRegionMatchBeginPositionMF_01106286) - 1) AS ?thisPositionOn103) .
BIND(?this AS ?pfs3t297) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn102))) AS ?pfsb100) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn103))) AS ?pfse101) .
FILTER ((BOUND(?thisPositionOn102) && BOUND(?thisPositionOn103))) .
BIND(URI(CONCAT(STR(?this), '#MF_03124a99')) AS ?annotation99) .
BIND(?this AS ?pfs98) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch302 faldo:location ?templateMotifSequenceMatchRegionQ04728303 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ04728305 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ04728MF_01106298 .
?templateMotifSequenceMatchRegionQ04728303 faldo:begin ?templateMotifSequenceMatchBeginQ04728304 .
?templateMotifSequenceMatchBeginQ04728304 faldo:position ?templateMotifSequenceMatchBeginPositionQ04728299 ;
faldo:reference isoform:Q04728-1 .
?templateMotifSequenceProfileAlignmentOperationQ04728305 edam:has_input signature:MF_01106 ;
rdf:type edam:operation_0300 .
?targetMotifMatch306 faldo:location ?targetMotifMatchRegionMatch307 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01106309 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ04728MF_01106300 .
?targetMotifMatchRegionMatch307 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01106308 .
?targetMotifMatchRegionMatchBeginMF_01106308 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01106301 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01106309 edam:has_input signature:MF_01106 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:4930 .
BIND(1 AS ?thisPositionOn108) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ04728MF_01106298, 1, (STRLEN(?templateMotifCigarQ04728MF_01106298) - STRLEN(REPLACE(?templateMotifCigarQ04728MF_01106298, CONCAT('^(?:-*[^-]){', STR(((8 - ?templateMotifSequenceMatchBeginPositionQ04728299) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1310) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ04728MF_01106300, 1, (STRLEN(?targetMotifMatchCigarQ04728MF_01106300) - STRLEN(REPLACE(?targetMotifMatchCigarQ04728MF_01106300, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1310), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ04728MF_01106300, 1, (STRLEN(?targetMotifMatchCigarQ04728MF_01106300) - STRLEN(REPLACE(?targetMotifMatchCigarQ04728MF_01106300, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1310), '}'), '')))), '[^-]', ''))) AS ?step2311) .
BIND(((?step2311 + ?targetMotifMatchRegionMatchBeginPositionMF_01106301) - 1) AS ?thisPositionOn109) .
BIND(?this AS ?pfs4t312) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn108))) AS ?pfsb106) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn109))) AS ?pfse107) .
FILTER ((BOUND(?thisPositionOn108) && BOUND(?thisPositionOn109))) .
BIND(URI(CONCAT(STR(?this), '#MF_03124a105')) AS ?annotation105) .
BIND(?this AS ?pfs104) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch317 faldo:location ?templateMotifSequenceMatchRegionQ04728318 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ04728320 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ04728MF_01106313 .
?templateMotifSequenceMatchRegionQ04728318 faldo:begin ?templateMotifSequenceMatchBeginQ04728319 .
?templateMotifSequenceMatchBeginQ04728319 faldo:position ?templateMotifSequenceMatchBeginPositionQ04728314 ;
faldo:reference isoform:Q04728-1 .
?templateMotifSequenceProfileAlignmentOperationQ04728320 edam:has_input signature:MF_01106 ;
rdf:type edam:operation_0300 .
?targetMotifMatch321 faldo:location ?targetMotifMatchRegionMatch322 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01106324 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ04728MF_01106315 .
?targetMotifMatchRegionMatch322 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01106323 .
?targetMotifMatchRegionMatchBeginMF_01106323 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01106316 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01106324 edam:has_input signature:MF_01106 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:4930 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ04728MF_01106313, 1, (STRLEN(?templateMotifCigarQ04728MF_01106313) - STRLEN(REPLACE(?templateMotifCigarQ04728MF_01106313, CONCAT('^(?:-*[^-]){', STR(((9 - ?templateMotifSequenceMatchBeginPositionQ04728314) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1325) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ04728MF_01106315, 1, (STRLEN(?targetMotifMatchCigarQ04728MF_01106315) - STRLEN(REPLACE(?targetMotifMatchCigarQ04728MF_01106315, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1325), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ04728MF_01106315, 1, (STRLEN(?targetMotifMatchCigarQ04728MF_01106315) - STRLEN(REPLACE(?targetMotifMatchCigarQ04728MF_01106315, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1325), '}'), '')))), '[^-]', ''))) AS ?step2326) .
BIND(((?step2326 + ?targetMotifMatchRegionMatchBeginPositionMF_01106316) - 1) AS ?thisPositionOn114) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ04728MF_01106313, 1, (STRLEN(?templateMotifCigarQ04728MF_01106313) - STRLEN(REPLACE(?templateMotifCigarQ04728MF_01106313, CONCAT('^(?:-*[^-]){', STR(((214 - ?templateMotifSequenceMatchBeginPositionQ04728314) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1327) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ04728MF_01106315, 1, (STRLEN(?targetMotifMatchCigarQ04728MF_01106315) - STRLEN(REPLACE(?targetMotifMatchCigarQ04728MF_01106315, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1327), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ04728MF_01106315, 1, (STRLEN(?targetMotifMatchCigarQ04728MF_01106315) - STRLEN(REPLACE(?targetMotifMatchCigarQ04728MF_01106315, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1327), '}'), '')))), '[^-]', ''))) AS ?step2328) .
BIND(((?step2328 + ?targetMotifMatchRegionMatchBeginPositionMF_01106316) - 1) AS ?thisPositionOn115) .
BIND(?this AS ?pfs4t329) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn114))) AS ?pfsb112) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn115))) AS ?pfse113) .
FILTER ((BOUND(?thisPositionOn114) && BOUND(?thisPositionOn115))) .
BIND(URI(CONCAT(STR(?this), '#MF_03124a111')) AS ?annotation111) .
BIND(?this AS ?pfs110) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:33090 .
BIND(?this AS ?case17) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:4930 .
BIND(?this AS ?case18) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:33090 .
})) .
BIND(?this AS ?case19) .
}
}
"xsd:string |
