| http://purl.uniprot.org/unirules/MF_03126#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:829719 up:source unirule:MF_03126 .
_:829720 up:source unirule:MF_03126 .
_:829721 up:source unirule:MF_03126 .
_:829722 up:source unirule:MF_03126 .
_:829723 up:source unirule:MF_03126 .
_:829724 up:source unirule:MF_03126 .
_:829725 up:source unirule:MF_03126 .
_:829726 up:source unirule:MF_03126 .
_:829727 up:source unirule:MF_03126 .
_:829728 up:source unirule:MF_03126 .
_:829729 up:source unirule:MF_03126 .
_:829730 up:source unirule:MF_03126 .
_:829731 up:source unirule:MF_03126 .
_:829732 up:source unirule:MF_03126 .
_:829733 up:source unirule:MF_03126 .
_:829734 up:source unirule:MF_03126 .
_:829735 up:source unirule:MF_03126 .
_:829736 up:source unirule:MF_03126 .
_:829737 up:source unirule:MF_03126 .
_:829738 up:source unirule:MF_03126 .
_:829739 up:source unirule:MF_03126 .
_:829740 up:source unirule:MF_03126 .
_:829741 up:source unirule:MF_03126 .
_:829742 up:source unirule:MF_03126 .
_:829743 up:source unirule:MF_03126 .
_:829744 up:source unirule:MF_03126 .
_:829745 up:source unirule:MF_03126 .
_:829746 up:source unirule:MF_03126 .
_:829747 up:source unirule:MF_03126 .
_:829748 up:source unirule:MF_03126 .
_:829749 up:source unirule:MF_03126 .
_:829750 up:source unirule:MF_03126 .
_:829751 up:source unirule:MF_03126 .
_:829752 up:source unirule:MF_03126 .
_:829753 up:source unirule:MF_03126 .
_:829754 up:source unirule:MF_03126 .
_:829755 up:source unirule:MF_03126 .
_:829756 up:source unirule:MF_03126 .
_:829757 up:source unirule:MF_03126 .
_:829758 up:source unirule:MF_03126 .
_:829759 up:source unirule:MF_03126 .
_:829760 up:source unirule:MF_03126 .
?this up:alternativeName ?name1 ,
?name2 ,
?name3 ;
up:annotation ?annotation5 ,
?annotation6 ,
?annotation8 ,
?annotation9 ,
?annotation10 ,
?annotation11 ,
?annotation13 ;
up:classifiedWith GO:0000287 ,
GO:0004019 ,
GO:0005525 ,
GO:0005737 ,
GO:0044208 ,
keyword:342 ,
keyword:436 ,
keyword:460 ,
keyword:479 ,
keyword:547 ,
keyword:658 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '6.3.4.4' ;
up:fullName 'Adenylosuccinate synthetase isozyme 1' ;
up:shortName 'AMPSase 1' ,
'AdSS 1' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Adenylosuccinate synthetase, basic isozyme' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'Adenylosuccinate synthetase, muscle isozyme' ;
up:shortName 'M-type adenylosuccinate synthetase' ;
rdf:type up:Structured_Name .
?name3 up:fullName 'IMP--aspartate ligase 1' ;
rdf:type up:Structured_Name .
?gene4 skos:altLabel 'ADSS1' ;
skos:prefLabel 'ADSSL1' .
?annotation5 a up:Function_Annotation ;
rdfs:comment 'Component of the purine nucleotide cycle (PNC), which interconverts IMP and AMP to regulate the nucleotide levels in various tissues, and which contributes to glycolysis and ammoniagenesis. Catalyzes the first commited step in the biosynthesis of AMP from IMP.' .
?annotation6 up:activity ?activity7 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity7 up:catalyticActivity ;
up:enzymeClass .
?annotation8 up:cofactor chebi:18420 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 1 Mg(2+) ion per subunit.' .
?annotation9 a up:Pathway_Annotation ;
rdfs:comment 'Purine metabolism; AMP biosynthesis via de novo pathway; AMP from IMP: step 1/2.' .
?annotation10 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation11 a up:Subcellular_Location_Annotation .
?annotation11li12 up:cellularComponent .
?annotation13 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the adenylosuccinate synthetase family.' .
?pfs14 up:annotation ?annotation15 .
?annotation15 faldo:begin ?pfsb16 ;
faldo:end ?pfse17 ;
up:ligand ?ligand18 ;
rdf:type up:Binding_Site_Annotation .
?pfsb16 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfse17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?ligand18 rdfs:subClassOf chebi:37565 .
?pfs21 up:annotation ?annotation22 .
?annotation22 faldo:begin ?pfsb23 ;
faldo:end ?pfse24 ;
up:ligand ?ligand25 ;
rdf:type up:Binding_Site_Annotation .
?pfsb23 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?pfse24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?ligand25 rdfs:subClassOf chebi:37565 .
?pfs28 up:annotation ?annotation29 .
?annotation29 faldo:begin ?pfsb30 ;
faldo:end ?pfse31 ;
up:ligand ?ligand32 ;
rdf:type up:Binding_Site_Annotation .
?pfsb30 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfse31 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?ligand32 rdfs:subClassOf chebi:37565 .
?pfs35 up:annotation ?annotation36 .
?annotation36 faldo:begin ?pfsb37 ;
faldo:end ?pfse38 ;
up:ligand ?ligand39 ;
rdf:type up:Binding_Site_Annotation .
?pfsb37 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?pfse38 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?ligand39 rdfs:subClassOf chebi:37565 .
?pfs42 up:annotation ?annotation43 .
?annotation43 faldo:begin ?pfsb44 ;
faldo:end ?pfse45 ;
up:ligand ?ligand46 ;
rdf:type up:Binding_Site_Annotation .
?pfsb44 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?pfse45 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?ligand46 rdfs:subClassOf chebi:58053 .
?pfs49 up:annotation ?annotation50 .
?annotation50 faldo:begin ?pfsb51 ;
faldo:end ?pfse52 ;
up:ligand ?ligand53 ;
rdf:type up:Binding_Site_Annotation .
?pfsb51 faldo:position ?thisPositionOn54 ;
rdf:type faldo:ExactPosition .
?pfse52 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
?ligand53 rdfs:subClassOf chebi:58053 .
?pfs56 up:annotation ?annotation57 .
?annotation57 faldo:begin ?pfsb58 ;
faldo:end ?pfse59 ;
up:ligand ?ligand60 ;
rdf:type up:Binding_Site_Annotation .
?pfsb58 faldo:position ?thisPositionOn62 ;
rdf:type faldo:ExactPosition .
?pfse59 faldo:position ?thisPositionOn63 ;
rdf:type faldo:ExactPosition .
?ligand60 rdfs:subClassOf ?molecule61 .
?molecule61 rdfs:label 'substrate' .
?pfs64 up:annotation ?annotation65 .
?annotation65 faldo:begin ?pfsb66 ;
faldo:end ?pfse67 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb66 faldo:position ?thisPositionOn68 ;
rdf:type faldo:ExactPosition .
?pfse67 faldo:position ?thisPositionOn69 ;
rdf:type faldo:ExactPosition .
?pfs70 up:annotation ?annotation71 .
?annotation71 faldo:begin ?pfsb72 ;
faldo:end ?pfse73 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton donor' .
?pfsb72 faldo:position ?thisPositionOn74 ;
rdf:type faldo:ExactPosition .
?pfse73 faldo:position ?thisPositionOn75 ;
rdf:type faldo:ExactPosition .
?pfs76 up:annotation ?annotation77 .
?annotation77 faldo:begin ?pfsb78 ;
faldo:end ?pfse79 ;
up:ligand ?ligand80 ;
rdf:type up:Binding_Site_Annotation .
?pfsb78 faldo:position ?thisPositionOn81 ;
rdf:type faldo:ExactPosition .
?pfse79 faldo:position ?thisPositionOn82 ;
rdf:type faldo:ExactPosition .
?ligand80 rdfs:subClassOf chebi:18420 .
?pfs83 up:annotation ?annotation84 .
?annotation84 faldo:begin ?pfsb85 ;
faldo:end ?pfse86 ;
up:ligand ?ligand87 ;
rdf:type up:Binding_Site_Annotation .
?pfsb85 faldo:position ?thisPositionOn88 ;
rdf:type faldo:ExactPosition .
?pfse86 faldo:position ?thisPositionOn89 ;
rdf:type faldo:ExactPosition .
?ligand87 rdfs:subClassOf chebi:18420 .
?pfs90 up:annotation ?annotation91 .
?annotation91 faldo:begin ?pfsb92 ;
faldo:end ?pfse93 ;
up:ligand ?ligand94 ;
rdf:type up:Binding_Site_Annotation .
?pfsb92 faldo:position ?thisPositionOn96 ;
rdf:type faldo:ExactPosition .
?pfse93 faldo:position ?thisPositionOn97 ;
rdf:type faldo:ExactPosition .
?ligand94 rdfs:subClassOf ?molecule95 .
?molecule95 rdfs:label 'substrate' .
?pfs98 up:annotation ?annotation99 .
?annotation99 faldo:begin ?pfsb100 ;
faldo:end ?pfse101 ;
up:ligand ?ligand102 ;
rdf:type up:Binding_Site_Annotation .
?pfsb100 faldo:position ?thisPositionOn103 ;
rdf:type faldo:ExactPosition .
?pfse101 faldo:position ?thisPositionOn104 ;
rdf:type faldo:ExactPosition .
?ligand102 rdfs:subClassOf chebi:58053 .
?pfs105 up:annotation ?annotation106 .
?annotation106 faldo:begin ?pfsb107 ;
faldo:end ?pfse108 ;
up:ligand ?ligand109 ;
rdf:type up:Binding_Site_Annotation .
?pfsb107 faldo:position ?thisPositionOn110 ;
rdf:type faldo:ExactPosition .
?pfse108 faldo:position ?thisPositionOn111 ;
rdf:type faldo:ExactPosition .
?ligand109 rdfs:subClassOf chebi:58053 .
?pfs112 up:annotation ?annotation113 .
?annotation113 faldo:begin ?pfsb114 ;
faldo:end ?pfse115 ;
up:ligand ?ligand116 ;
rdf:type up:Binding_Site_Annotation .
?pfsb114 faldo:position ?thisPositionOn117 ;
rdf:type faldo:ExactPosition .
?pfse115 faldo:position ?thisPositionOn118 ;
rdf:type faldo:ExactPosition .
?ligand116 rdfs:subClassOf chebi:58053 .
?pfs119 up:annotation ?annotation120 .
?annotation120 faldo:begin ?pfsb121 ;
faldo:end ?pfse122 ;
up:ligand ?ligand123 ;
rdf:type up:Binding_Site_Annotation .
?pfsb121 faldo:position ?thisPositionOn124 ;
rdf:type faldo:ExactPosition .
?pfse122 faldo:position ?thisPositionOn125 ;
rdf:type faldo:ExactPosition .
?ligand123 rdfs:subClassOf chebi:58053 .
?pfs126 up:annotation ?annotation127 .
?annotation127 faldo:begin ?pfsb128 ;
faldo:end ?pfse129 ;
up:ligand ?ligand130 ;
rdf:type up:Binding_Site_Annotation .
?pfsb128 faldo:position ?thisPositionOn131 ;
rdf:type faldo:ExactPosition .
?pfse129 faldo:position ?thisPositionOn132 ;
rdf:type faldo:ExactPosition .
?ligand130 rdfs:subClassOf chebi:58053 .
?pfs133 up:annotation ?annotation134 .
?annotation134 faldo:begin ?pfsb135 ;
faldo:end ?pfse136 ;
up:ligand ?ligand137 ;
rdf:type up:Binding_Site_Annotation .
?pfsb135 faldo:position ?thisPositionOn138 ;
rdf:type faldo:ExactPosition .
?pfse136 faldo:position ?thisPositionOn139 ;
rdf:type faldo:ExactPosition .
?ligand137 rdfs:subClassOf chebi:37565 .
_:829761 a rdf:Statement ;
up:attribution _:829719 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:829762 a rdf:Statement ;
up:attribution _:829720 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:829763 a rdf:Statement ;
up:attribution _:829721 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:829764 a rdf:Statement ;
up:attribution _:829722 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name3 .
_:829765 a rdf:Statement ;
up:attribution _:829723 ;
rdf:subject ?gene4 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene4 .
_:829766 a rdf:Statement ;
up:attribution _:829724 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:829767 a rdf:Statement ;
up:attribution _:829725 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:829768 a rdf:Statement ;
up:attribution _:829726 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:829769 a rdf:Statement ;
up:attribution _:829727 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:829770 a rdf:Statement ;
up:attribution _:829728 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:829771 a rdf:Statement ;
up:attribution _:829729 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:829772 a rdf:Statement ;
up:attribution _:829730 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:829773 a rdf:Statement ;
up:attribution _:829731 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:829774 a rdf:Statement ;
up:attribution _:829732 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:342 .
_:829775 a rdf:Statement ;
up:attribution _:829733 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:436 .
_:829776 a rdf:Statement ;
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rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:829777 a rdf:Statement ;
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rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:829778 a rdf:Statement ;
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rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
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rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:658 .
_:829780 a rdf:Statement ;
up:attribution _:829738 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004019 .
_:829781 a rdf:Statement ;
up:attribution _:829739 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005525 .
_:829782 a rdf:Statement ;
up:attribution _:829740 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000287 .
_:829783 a rdf:Statement ;
up:attribution _:829741 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0044208 .
_:829784 a rdf:Statement ;
up:attribution _:829742 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:829785 a rdf:Statement ;
up:source unirule:MF_03126 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:829786 a rdf:Statement ;
up:attribution _:829743 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:829787 a rdf:Statement ;
up:source unirule:MF_03126 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:829788 a rdf:Statement ;
up:attribution _:829744 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:829789 a rdf:Statement ;
up:source unirule:MF_03126 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:829790 a rdf:Statement ;
up:attribution _:829745 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:829791 a rdf:Statement ;
up:source unirule:MF_03126 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:829792 a rdf:Statement ;
up:attribution _:829746 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:829793 a rdf:Statement ;
up:source unirule:MF_03126 ;
rdf:subject ?pfs42 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:829794 a rdf:Statement ;
up:attribution _:829747 ;
rdf:subject ?pfs42 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:829795 a rdf:Statement ;
up:source unirule:MF_03126 ;
rdf:subject ?pfs49 ;
rdf:predicate up:annotation ;
rdf:object ?annotation50 .
_:829796 a rdf:Statement ;
up:attribution _:829748 ;
rdf:subject ?pfs49 ;
rdf:predicate up:annotation ;
rdf:object ?annotation50 .
_:829797 a rdf:Statement ;
up:source unirule:MF_03126 ;
rdf:subject ?pfs56 ;
rdf:predicate up:annotation ;
rdf:object ?annotation57 .
_:829798 a rdf:Statement ;
up:attribution _:829749 ;
rdf:subject ?pfs56 ;
rdf:predicate up:annotation ;
rdf:object ?annotation57 .
_:829799 a rdf:Statement ;
up:source unirule:MF_03126 ;
rdf:subject ?pfs64 ;
rdf:predicate up:annotation ;
rdf:object ?annotation65 .
_:829800 a rdf:Statement ;
up:attribution _:829750 ;
rdf:subject ?pfs64 ;
rdf:predicate up:annotation ;
rdf:object ?annotation65 .
_:829801 a rdf:Statement ;
up:source unirule:MF_03126 ;
rdf:subject ?pfs70 ;
rdf:predicate up:annotation ;
rdf:object ?annotation71 .
_:829802 a rdf:Statement ;
up:attribution _:829751 ;
rdf:subject ?pfs70 ;
rdf:predicate up:annotation ;
rdf:object ?annotation71 .
_:829803 a rdf:Statement ;
up:source unirule:MF_03126 ;
rdf:subject ?pfs76 ;
rdf:predicate up:annotation ;
rdf:object ?annotation77 .
_:829804 a rdf:Statement ;
up:attribution _:829752 ;
rdf:subject ?pfs76 ;
rdf:predicate up:annotation ;
rdf:object ?annotation77 .
_:829805 a rdf:Statement ;
up:source unirule:MF_03126 ;
rdf:subject ?pfs83 ;
rdf:predicate up:annotation ;
rdf:object ?annotation84 .
_:829806 a rdf:Statement ;
up:attribution _:829753 ;
rdf:subject ?pfs83 ;
rdf:predicate up:annotation ;
rdf:object ?annotation84 .
_:829807 a rdf:Statement ;
up:source unirule:MF_03126 ;
rdf:subject ?pfs90 ;
rdf:predicate up:annotation ;
rdf:object ?annotation91 .
_:829808 a rdf:Statement ;
up:attribution _:829754 ;
rdf:subject ?pfs90 ;
rdf:predicate up:annotation ;
rdf:object ?annotation91 .
_:829809 a rdf:Statement ;
up:source unirule:MF_03126 ;
rdf:subject ?pfs98 ;
rdf:predicate up:annotation ;
rdf:object ?annotation99 .
_:829810 a rdf:Statement ;
up:attribution _:829755 ;
rdf:subject ?pfs98 ;
rdf:predicate up:annotation ;
rdf:object ?annotation99 .
_:829811 a rdf:Statement ;
up:source unirule:MF_03126 ;
rdf:subject ?pfs105 ;
rdf:predicate up:annotation ;
rdf:object ?annotation106 .
_:829812 a rdf:Statement ;
up:attribution _:829756 ;
rdf:subject ?pfs105 ;
rdf:predicate up:annotation ;
rdf:object ?annotation106 .
_:829813 a rdf:Statement ;
up:source unirule:MF_03126 ;
rdf:subject ?pfs112 ;
rdf:predicate up:annotation ;
rdf:object ?annotation113 .
_:829814 a rdf:Statement ;
up:attribution _:829757 ;
rdf:subject ?pfs112 ;
rdf:predicate up:annotation ;
rdf:object ?annotation113 .
_:829815 a rdf:Statement ;
up:source unirule:MF_03126 ;
rdf:subject ?pfs119 ;
rdf:predicate up:annotation ;
rdf:object ?annotation120 .
_:829816 a rdf:Statement ;
up:attribution _:829758 ;
rdf:subject ?pfs119 ;
rdf:predicate up:annotation ;
rdf:object ?annotation120 .
_:829817 a rdf:Statement ;
up:source unirule:MF_03126 ;
rdf:subject ?pfs126 ;
rdf:predicate up:annotation ;
rdf:object ?annotation127 .
_:829818 a rdf:Statement ;
up:attribution _:829759 ;
rdf:subject ?pfs126 ;
rdf:predicate up:annotation ;
rdf:object ?annotation127 .
_:829819 a rdf:Statement ;
up:source unirule:MF_03126 ;
rdf:subject ?pfs133 ;
rdf:predicate up:annotation ;
rdf:object ?annotation134 .
_:829820 a rdf:Statement ;
up:attribution _:829760 ;
rdf:subject ?pfs133 ;
rdf:predicate up:annotation ;
rdf:object ?annotation134 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_03126
#Rule MF_03126 Created by:? on:2012-08-21 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_03126 .
?thisOrganism rdfs:subClassOf+ taxon:7742 .
BIND(URI(CONCAT(STR(?this), '#MF_03126a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_03126a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_03126a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_03126a3')) AS ?name3) .
BIND(URI(CONCAT(STR(?this), '#MF_03126a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_03126a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_03126a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_03126a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_03126a10')) AS ?annotation10) .
BIND(URI(CONCAT(STR(?this), '#MF_03126a11')) AS ?annotation11) .
BIND(URI(CONCAT(STR(?this), '#MF_03126a13')) AS ?annotation13) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch144 faldo:location ?templateMotifSequenceMatchRegionP28650145 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP28650147 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP28650MF_03126140 .
?templateMotifSequenceMatchRegionP28650145 faldo:begin ?templateMotifSequenceMatchBeginP28650146 .
?templateMotifSequenceMatchBeginP28650146 faldo:position ?templateMotifSequenceMatchBeginPositionP28650141 ;
faldo:reference isoform:P28650-1 .
?templateMotifSequenceProfileAlignmentOperationP28650147 edam:has_input signature:MF_03126 ;
rdf:type edam:operation_0300 .
?targetMotifMatch148 faldo:location ?targetMotifMatchRegionMatch149 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03126151 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP28650MF_03126142 .
?targetMotifMatchRegionMatch149 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03126150 .
?targetMotifMatchRegionMatchBeginMF_03126150 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03126143 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03126151 edam:has_input signature:MF_03126 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP28650MF_03126140, 1, (STRLEN(?templateMotifCigarP28650MF_03126140) - STRLEN(REPLACE(?templateMotifCigarP28650MF_03126140, CONCAT('^(?:-*[^-]){', STR(((42 - ?templateMotifSequenceMatchBeginPositionP28650141) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1152) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP28650MF_03126142, 1, (STRLEN(?targetMotifMatchCigarP28650MF_03126142) - STRLEN(REPLACE(?targetMotifMatchCigarP28650MF_03126142, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1152), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP28650MF_03126142, 1, (STRLEN(?targetMotifMatchCigarP28650MF_03126142) - STRLEN(REPLACE(?targetMotifMatchCigarP28650MF_03126142, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1152), '}'), '')))), '[^-]', ''))) AS ?step2153) .
BIND(((?step2153 + ?targetMotifMatchRegionMatchBeginPositionMF_03126143) - 1) AS ?thisPositionOn19) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP28650MF_03126140, 1, (STRLEN(?templateMotifCigarP28650MF_03126140) - STRLEN(REPLACE(?templateMotifCigarP28650MF_03126140, CONCAT('^(?:-*[^-]){', STR(((48 - ?templateMotifSequenceMatchBeginPositionP28650141) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1154) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP28650MF_03126142, 1, (STRLEN(?targetMotifMatchCigarP28650MF_03126142) - STRLEN(REPLACE(?targetMotifMatchCigarP28650MF_03126142, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1154), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP28650MF_03126142, 1, (STRLEN(?targetMotifMatchCigarP28650MF_03126142) - STRLEN(REPLACE(?targetMotifMatchCigarP28650MF_03126142, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1154), '}'), '')))), '[^-]', ''))) AS ?step2155) .
BIND(((?step2155 + ?targetMotifMatchRegionMatchBeginPositionMF_03126143) - 1) AS ?thisPositionOn20) .
BIND(?this AS ?pfs1t156) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb16) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse17) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn19, (?thisPositionOn20 - ?thisPositionOn19)) = 'GDEGKGK')) .
BIND(URI(CONCAT(STR(?this), '#MF_03126a15')) AS ?annotation15) .
BIND(?this AS ?pfs14) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch161 faldo:location ?templateMotifSequenceMatchRegionP28650162 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP28650164 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP28650MF_03126157 .
?templateMotifSequenceMatchRegionP28650162 faldo:begin ?templateMotifSequenceMatchBeginP28650163 .
?templateMotifSequenceMatchBeginP28650163 faldo:position ?templateMotifSequenceMatchBeginPositionP28650158 ;
faldo:reference isoform:P28650-1 .
?templateMotifSequenceProfileAlignmentOperationP28650164 edam:has_input signature:MF_03126 ;
rdf:type edam:operation_0300 .
?targetMotifMatch165 faldo:location ?targetMotifMatchRegionMatch166 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03126168 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP28650MF_03126159 .
?targetMotifMatchRegionMatch166 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03126167 .
?targetMotifMatchRegionMatchBeginMF_03126167 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03126160 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03126168 edam:has_input signature:MF_03126 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP28650MF_03126157, 1, (STRLEN(?templateMotifCigarP28650MF_03126157) - STRLEN(REPLACE(?templateMotifCigarP28650MF_03126157, CONCAT('^(?:-*[^-]){', STR(((70 - ?templateMotifSequenceMatchBeginPositionP28650158) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1169) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP28650MF_03126159, 1, (STRLEN(?targetMotifMatchCigarP28650MF_03126159) - STRLEN(REPLACE(?targetMotifMatchCigarP28650MF_03126159, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1169), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP28650MF_03126159, 1, (STRLEN(?targetMotifMatchCigarP28650MF_03126159) - STRLEN(REPLACE(?targetMotifMatchCigarP28650MF_03126159, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1169), '}'), '')))), '[^-]', ''))) AS ?step2170) .
BIND(((?step2170 + ?targetMotifMatchRegionMatchBeginPositionMF_03126160) - 1) AS ?thisPositionOn26) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP28650MF_03126157, 1, (STRLEN(?templateMotifCigarP28650MF_03126157) - STRLEN(REPLACE(?templateMotifCigarP28650MF_03126157, CONCAT('^(?:-*[^-]){', STR(((72 - ?templateMotifSequenceMatchBeginPositionP28650158) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1171) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP28650MF_03126159, 1, (STRLEN(?targetMotifMatchCigarP28650MF_03126159) - STRLEN(REPLACE(?targetMotifMatchCigarP28650MF_03126159, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1171), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP28650MF_03126159, 1, (STRLEN(?targetMotifMatchCigarP28650MF_03126159) - STRLEN(REPLACE(?targetMotifMatchCigarP28650MF_03126159, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1171), '}'), '')))), '[^-]', ''))) AS ?step2172) .
BIND(((?step2172 + ?targetMotifMatchRegionMatchBeginPositionMF_03126160) - 1) AS ?thisPositionOn27) .
BIND(?this AS ?pfs1t173) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb23) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse24) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn26, (?thisPositionOn27 - ?thisPositionOn26)) = 'GHT')) .
BIND(URI(CONCAT(STR(?this), '#MF_03126a22')) AS ?annotation22) .
BIND(?this AS ?pfs21) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch178 faldo:location ?templateMotifSequenceMatchRegionP28650179 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP28650181 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP28650MF_03126174 .
?templateMotifSequenceMatchRegionP28650179 faldo:begin ?templateMotifSequenceMatchBeginP28650180 .
?templateMotifSequenceMatchBeginP28650180 faldo:position ?templateMotifSequenceMatchBeginPositionP28650175 ;
faldo:reference isoform:P28650-1 .
?templateMotifSequenceProfileAlignmentOperationP28650181 edam:has_input signature:MF_03126 ;
rdf:type edam:operation_0300 .
?targetMotifMatch182 faldo:location ?targetMotifMatchRegionMatch183 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03126185 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP28650MF_03126176 .
?targetMotifMatchRegionMatch183 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03126184 .
?targetMotifMatchRegionMatchBeginMF_03126184 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03126177 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03126185 edam:has_input signature:MF_03126 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP28650MF_03126174, 1, (STRLEN(?templateMotifCigarP28650MF_03126174) - STRLEN(REPLACE(?templateMotifCigarP28650MF_03126174, CONCAT('^(?:-*[^-]){', STR(((363 - ?templateMotifSequenceMatchBeginPositionP28650175) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1186) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP28650MF_03126176, 1, (STRLEN(?targetMotifMatchCigarP28650MF_03126176) - STRLEN(REPLACE(?targetMotifMatchCigarP28650MF_03126176, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1186), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP28650MF_03126176, 1, (STRLEN(?targetMotifMatchCigarP28650MF_03126176) - STRLEN(REPLACE(?targetMotifMatchCigarP28650MF_03126176, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1186), '}'), '')))), '[^-]', ''))) AS ?step2187) .
BIND(((?step2187 + ?targetMotifMatchRegionMatchBeginPositionMF_03126177) - 1) AS ?thisPositionOn33) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP28650MF_03126174, 1, (STRLEN(?templateMotifCigarP28650MF_03126174) - STRLEN(REPLACE(?templateMotifCigarP28650MF_03126174, CONCAT('^(?:-*[^-]){', STR(((365 - ?templateMotifSequenceMatchBeginPositionP28650175) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1188) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP28650MF_03126176, 1, (STRLEN(?targetMotifMatchCigarP28650MF_03126176) - STRLEN(REPLACE(?targetMotifMatchCigarP28650MF_03126176, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1188), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP28650MF_03126176, 1, (STRLEN(?targetMotifMatchCigarP28650MF_03126176) - STRLEN(REPLACE(?targetMotifMatchCigarP28650MF_03126176, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1188), '}'), '')))), '[^-]', ''))) AS ?step2189) .
BIND(((?step2189 + ?targetMotifMatchRegionMatchBeginPositionMF_03126177) - 1) AS ?thisPositionOn34) .
BIND(?this AS ?pfs1t190) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb30) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse31) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn33, (?thisPositionOn34 - ?thisPositionOn33)) = 'KLD')) .
BIND(URI(CONCAT(STR(?this), '#MF_03126a29')) AS ?annotation29) .
BIND(?this AS ?pfs28) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch195 faldo:location ?templateMotifSequenceMatchRegionP28650196 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP28650198 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP28650MF_03126191 .
?templateMotifSequenceMatchRegionP28650196 faldo:begin ?templateMotifSequenceMatchBeginP28650197 .
?templateMotifSequenceMatchBeginP28650197 faldo:position ?templateMotifSequenceMatchBeginPositionP28650192 ;
faldo:reference isoform:P28650-1 .
?templateMotifSequenceProfileAlignmentOperationP28650198 edam:has_input signature:MF_03126 ;
rdf:type edam:operation_0300 .
?targetMotifMatch199 faldo:location ?targetMotifMatchRegionMatch200 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03126202 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP28650MF_03126193 .
?targetMotifMatchRegionMatch200 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03126201 .
?targetMotifMatchRegionMatchBeginMF_03126201 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03126194 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03126202 edam:has_input signature:MF_03126 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP28650MF_03126191, 1, (STRLEN(?templateMotifCigarP28650MF_03126191) - STRLEN(REPLACE(?templateMotifCigarP28650MF_03126191, CONCAT('^(?:-*[^-]){', STR(((445 - ?templateMotifSequenceMatchBeginPositionP28650192) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1203) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP28650MF_03126193, 1, (STRLEN(?targetMotifMatchCigarP28650MF_03126193) - STRLEN(REPLACE(?targetMotifMatchCigarP28650MF_03126193, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1203), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP28650MF_03126193, 1, (STRLEN(?targetMotifMatchCigarP28650MF_03126193) - STRLEN(REPLACE(?targetMotifMatchCigarP28650MF_03126193, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1203), '}'), '')))), '[^-]', ''))) AS ?step2204) .
BIND(((?step2204 + ?targetMotifMatchRegionMatchBeginPositionMF_03126194) - 1) AS ?thisPositionOn40) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP28650MF_03126191, 1, (STRLEN(?templateMotifCigarP28650MF_03126191) - STRLEN(REPLACE(?templateMotifCigarP28650MF_03126191, CONCAT('^(?:-*[^-]){', STR(((448 - ?templateMotifSequenceMatchBeginPositionP28650192) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1205) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP28650MF_03126193, 1, (STRLEN(?targetMotifMatchCigarP28650MF_03126193) - STRLEN(REPLACE(?targetMotifMatchCigarP28650MF_03126193, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1205), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP28650MF_03126193, 1, (STRLEN(?targetMotifMatchCigarP28650MF_03126193) - STRLEN(REPLACE(?targetMotifMatchCigarP28650MF_03126193, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1205), '}'), '')))), '[^-]', ''))) AS ?step2206) .
BIND(((?step2206 + ?targetMotifMatchRegionMatchBeginPositionMF_03126194) - 1) AS ?thisPositionOn41) .
BIND(?this AS ?pfs1t207) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfsb37) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfse38) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn40, (?thisPositionOn41 - ?thisPositionOn40)) = 'GVGK')) .
BIND(URI(CONCAT(STR(?this), '#MF_03126a36')) AS ?annotation36) .
BIND(?this AS ?pfs35) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch212 faldo:location ?templateMotifSequenceMatchRegionP28650213 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP28650215 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP28650MF_03126208 .
?templateMotifSequenceMatchRegionP28650213 faldo:begin ?templateMotifSequenceMatchBeginP28650214 .
?templateMotifSequenceMatchBeginP28650214 faldo:position ?templateMotifSequenceMatchBeginPositionP28650209 ;
faldo:reference isoform:P28650-1 .
?templateMotifSequenceProfileAlignmentOperationP28650215 edam:has_input signature:MF_03126 ;
rdf:type edam:operation_0300 .
?targetMotifMatch216 faldo:location ?targetMotifMatchRegionMatch217 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03126219 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP28650MF_03126210 .
?targetMotifMatchRegionMatch217 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03126218 .
?targetMotifMatchRegionMatchBeginMF_03126218 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03126211 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03126219 edam:has_input signature:MF_03126 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP28650MF_03126208, 1, (STRLEN(?templateMotifCigarP28650MF_03126208) - STRLEN(REPLACE(?templateMotifCigarP28650MF_03126208, CONCAT('^(?:-*[^-]){', STR(((43 - ?templateMotifSequenceMatchBeginPositionP28650209) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1220) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP28650MF_03126210, 1, (STRLEN(?targetMotifMatchCigarP28650MF_03126210) - STRLEN(REPLACE(?targetMotifMatchCigarP28650MF_03126210, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1220), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP28650MF_03126210, 1, (STRLEN(?targetMotifMatchCigarP28650MF_03126210) - STRLEN(REPLACE(?targetMotifMatchCigarP28650MF_03126210, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1220), '}'), '')))), '[^-]', ''))) AS ?step2221) .
BIND(((?step2221 + ?targetMotifMatchRegionMatchBeginPositionMF_03126211) - 1) AS ?thisPositionOn47) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP28650MF_03126208, 1, (STRLEN(?templateMotifCigarP28650MF_03126208) - STRLEN(REPLACE(?templateMotifCigarP28650MF_03126208, CONCAT('^(?:-*[^-]){', STR(((46 - ?templateMotifSequenceMatchBeginPositionP28650209) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1222) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP28650MF_03126210, 1, (STRLEN(?targetMotifMatchCigarP28650MF_03126210) - STRLEN(REPLACE(?targetMotifMatchCigarP28650MF_03126210, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1222), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP28650MF_03126210, 1, (STRLEN(?targetMotifMatchCigarP28650MF_03126210) - STRLEN(REPLACE(?targetMotifMatchCigarP28650MF_03126210, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1222), '}'), '')))), '[^-]', ''))) AS ?step2223) .
BIND(((?step2223 + ?targetMotifMatchRegionMatchBeginPositionMF_03126211) - 1) AS ?thisPositionOn48) .
BIND(?this AS ?pfs1t224) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfsb44) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfse45) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn47, (?thisPositionOn48 - ?thisPositionOn47)) = 'DEGK')) .
BIND(URI(CONCAT(STR(?this), '#MF_03126a43')) AS ?annotation43) .
BIND(?this AS ?pfs42) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch229 faldo:location ?templateMotifSequenceMatchRegionP28650230 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP28650232 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP28650MF_03126225 .
?templateMotifSequenceMatchRegionP28650230 faldo:begin ?templateMotifSequenceMatchBeginP28650231 .
?templateMotifSequenceMatchBeginP28650231 faldo:position ?templateMotifSequenceMatchBeginPositionP28650226 ;
faldo:reference isoform:P28650-1 .
?templateMotifSequenceProfileAlignmentOperationP28650232 edam:has_input signature:MF_03126 ;
rdf:type edam:operation_0300 .
?targetMotifMatch233 faldo:location ?targetMotifMatchRegionMatch234 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03126236 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP28650MF_03126227 .
?targetMotifMatchRegionMatch234 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03126235 .
?targetMotifMatchRegionMatchBeginMF_03126235 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03126228 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03126236 edam:has_input signature:MF_03126 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP28650MF_03126225, 1, (STRLEN(?templateMotifCigarP28650MF_03126225) - STRLEN(REPLACE(?templateMotifCigarP28650MF_03126225, CONCAT('^(?:-*[^-]){', STR(((68 - ?templateMotifSequenceMatchBeginPositionP28650226) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1237) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP28650MF_03126227, 1, (STRLEN(?targetMotifMatchCigarP28650MF_03126227) - STRLEN(REPLACE(?targetMotifMatchCigarP28650MF_03126227, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1237), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP28650MF_03126227, 1, (STRLEN(?targetMotifMatchCigarP28650MF_03126227) - STRLEN(REPLACE(?targetMotifMatchCigarP28650MF_03126227, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1237), '}'), '')))), '[^-]', ''))) AS ?step2238) .
BIND(((?step2238 + ?targetMotifMatchRegionMatchBeginPositionMF_03126228) - 1) AS ?thisPositionOn54) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP28650MF_03126225, 1, (STRLEN(?templateMotifCigarP28650MF_03126225) - STRLEN(REPLACE(?templateMotifCigarP28650MF_03126225, CONCAT('^(?:-*[^-]){', STR(((71 - ?templateMotifSequenceMatchBeginPositionP28650226) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1239) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP28650MF_03126227, 1, (STRLEN(?targetMotifMatchCigarP28650MF_03126227) - STRLEN(REPLACE(?targetMotifMatchCigarP28650MF_03126227, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1239), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP28650MF_03126227, 1, (STRLEN(?targetMotifMatchCigarP28650MF_03126227) - STRLEN(REPLACE(?targetMotifMatchCigarP28650MF_03126227, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1239), '}'), '')))), '[^-]', ''))) AS ?step2240) .
BIND(((?step2240 + ?targetMotifMatchRegionMatchBeginPositionMF_03126228) - 1) AS ?thisPositionOn55) .
BIND(?this AS ?pfs1t241) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfsb51) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfse52) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn54, (?thisPositionOn55 - ?thisPositionOn54)) = 'NAGH')) .
BIND(URI(CONCAT(STR(?this), '#MF_03126a50')) AS ?annotation50) .
BIND(?this AS ?pfs49) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch246 faldo:location ?templateMotifSequenceMatchRegionP28650247 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP28650249 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP28650MF_03126242 .
?templateMotifSequenceMatchRegionP28650247 faldo:begin ?templateMotifSequenceMatchBeginP28650248 .
?templateMotifSequenceMatchBeginP28650248 faldo:position ?templateMotifSequenceMatchBeginPositionP28650243 ;
faldo:reference isoform:P28650-1 .
?templateMotifSequenceProfileAlignmentOperationP28650249 edam:has_input signature:MF_03126 ;
rdf:type edam:operation_0300 .
?targetMotifMatch250 faldo:location ?targetMotifMatchRegionMatch251 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03126253 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP28650MF_03126244 .
?targetMotifMatchRegionMatch251 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03126252 .
?targetMotifMatchRegionMatchBeginMF_03126252 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03126245 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03126253 edam:has_input signature:MF_03126 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP28650MF_03126242, 1, (STRLEN(?templateMotifCigarP28650MF_03126242) - STRLEN(REPLACE(?templateMotifCigarP28650MF_03126242, CONCAT('^(?:-*[^-]){', STR(((331 - ?templateMotifSequenceMatchBeginPositionP28650243) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1254) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP28650MF_03126244, 1, (STRLEN(?targetMotifMatchCigarP28650MF_03126244) - STRLEN(REPLACE(?targetMotifMatchCigarP28650MF_03126244, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1254), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP28650MF_03126244, 1, (STRLEN(?targetMotifMatchCigarP28650MF_03126244) - STRLEN(REPLACE(?targetMotifMatchCigarP28650MF_03126244, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1254), '}'), '')))), '[^-]', ''))) AS ?step2255) .
BIND(((?step2255 + ?targetMotifMatchRegionMatchBeginPositionMF_03126245) - 1) AS ?thisPositionOn62) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP28650MF_03126242, 1, (STRLEN(?templateMotifCigarP28650MF_03126242) - STRLEN(REPLACE(?templateMotifCigarP28650MF_03126242, CONCAT('^(?:-*[^-]){', STR(((337 - ?templateMotifSequenceMatchBeginPositionP28650243) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1256) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP28650MF_03126244, 1, (STRLEN(?targetMotifMatchCigarP28650MF_03126244) - STRLEN(REPLACE(?targetMotifMatchCigarP28650MF_03126244, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1256), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP28650MF_03126244, 1, (STRLEN(?targetMotifMatchCigarP28650MF_03126244) - STRLEN(REPLACE(?targetMotifMatchCigarP28650MF_03126244, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1256), '}'), '')))), '[^-]', ''))) AS ?step2257) .
BIND(((?step2257 + ?targetMotifMatchRegionMatchBeginPositionMF_03126245) - 1) AS ?thisPositionOn63) .
BIND(?this AS ?pfs1t258) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfsb58) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfse59) .
FILTER (REGEX('[ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX]T[ARNDCQEGHILKMFPSTWYVBZJUOX][KR][ARNDCQEGHILKMFPSTWYVBZJUOX]R', SUBSTR(?thisSequenceValue, ?thisPositionOn62, (?thisPositionOn63 - ?thisPositionOn62)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03126a57')) AS ?annotation57) .
BIND(?this AS ?pfs56) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch263 faldo:location ?templateMotifSequenceMatchRegionP28650264 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP28650266 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP28650MF_03126259 .
?templateMotifSequenceMatchRegionP28650264 faldo:begin ?templateMotifSequenceMatchBeginP28650265 .
?templateMotifSequenceMatchBeginP28650265 faldo:position ?templateMotifSequenceMatchBeginPositionP28650260 ;
faldo:reference isoform:P28650-1 .
?templateMotifSequenceProfileAlignmentOperationP28650266 edam:has_input signature:MF_03126 ;
rdf:type edam:operation_0300 .
?targetMotifMatch267 faldo:location ?targetMotifMatchRegionMatch268 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03126270 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP28650MF_03126261 .
?targetMotifMatchRegionMatch268 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03126269 .
?targetMotifMatchRegionMatchBeginMF_03126269 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03126262 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03126270 edam:has_input signature:MF_03126 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP28650MF_03126259, 1, (STRLEN(?templateMotifCigarP28650MF_03126259) - STRLEN(REPLACE(?templateMotifCigarP28650MF_03126259, CONCAT('^(?:-*[^-]){', STR(((43 - ?templateMotifSequenceMatchBeginPositionP28650260) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1271) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP28650MF_03126261, 1, (STRLEN(?targetMotifMatchCigarP28650MF_03126261) - STRLEN(REPLACE(?targetMotifMatchCigarP28650MF_03126261, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1271), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP28650MF_03126261, 1, (STRLEN(?targetMotifMatchCigarP28650MF_03126261) - STRLEN(REPLACE(?targetMotifMatchCigarP28650MF_03126261, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1271), '}'), '')))), '[^-]', ''))) AS ?step2272) .
BIND(((?step2272 + ?targetMotifMatchRegionMatchBeginPositionMF_03126262) - 1) AS ?thisPositionOn68) .
BIND(?thisPositionOn68 AS ?thisPositionOn69) .
BIND(?this AS ?pfs1t273) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn68))) AS ?pfsb66) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn69))) AS ?pfse67) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn68, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_03126a65')) AS ?annotation65) .
BIND(?this AS ?pfs64) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch278 faldo:location ?templateMotifSequenceMatchRegionP28650279 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP28650281 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP28650MF_03126274 .
?templateMotifSequenceMatchRegionP28650279 faldo:begin ?templateMotifSequenceMatchBeginP28650280 .
?templateMotifSequenceMatchBeginP28650280 faldo:position ?templateMotifSequenceMatchBeginPositionP28650275 ;
faldo:reference isoform:P28650-1 .
?templateMotifSequenceProfileAlignmentOperationP28650281 edam:has_input signature:MF_03126 ;
rdf:type edam:operation_0300 .
?targetMotifMatch282 faldo:location ?targetMotifMatchRegionMatch283 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03126285 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP28650MF_03126276 .
?targetMotifMatchRegionMatch283 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03126284 .
?targetMotifMatchRegionMatchBeginMF_03126284 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03126277 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03126285 edam:has_input signature:MF_03126 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP28650MF_03126274, 1, (STRLEN(?templateMotifCigarP28650MF_03126274) - STRLEN(REPLACE(?templateMotifCigarP28650MF_03126274, CONCAT('^(?:-*[^-]){', STR(((71 - ?templateMotifSequenceMatchBeginPositionP28650275) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1286) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP28650MF_03126276, 1, (STRLEN(?targetMotifMatchCigarP28650MF_03126276) - STRLEN(REPLACE(?targetMotifMatchCigarP28650MF_03126276, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1286), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP28650MF_03126276, 1, (STRLEN(?targetMotifMatchCigarP28650MF_03126276) - STRLEN(REPLACE(?targetMotifMatchCigarP28650MF_03126276, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1286), '}'), '')))), '[^-]', ''))) AS ?step2287) .
BIND(((?step2287 + ?targetMotifMatchRegionMatchBeginPositionMF_03126277) - 1) AS ?thisPositionOn74) .
BIND(?thisPositionOn74 AS ?thisPositionOn75) .
BIND(?this AS ?pfs1t288) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn74))) AS ?pfsb72) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn75))) AS ?pfse73) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn74, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_03126a71')) AS ?annotation71) .
BIND(?this AS ?pfs70) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch293 faldo:location ?templateMotifSequenceMatchRegionP28650294 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP28650296 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP28650MF_03126289 .
?templateMotifSequenceMatchRegionP28650294 faldo:begin ?templateMotifSequenceMatchBeginP28650295 .
?templateMotifSequenceMatchBeginP28650295 faldo:position ?templateMotifSequenceMatchBeginPositionP28650290 ;
faldo:reference isoform:P28650-1 .
?templateMotifSequenceProfileAlignmentOperationP28650296 edam:has_input signature:MF_03126 ;
rdf:type edam:operation_0300 .
?targetMotifMatch297 faldo:location ?targetMotifMatchRegionMatch298 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03126300 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP28650MF_03126291 .
?targetMotifMatchRegionMatch298 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03126299 .
?targetMotifMatchRegionMatchBeginMF_03126299 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03126292 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03126300 edam:has_input signature:MF_03126 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP28650MF_03126289, 1, (STRLEN(?templateMotifCigarP28650MF_03126289) - STRLEN(REPLACE(?templateMotifCigarP28650MF_03126289, CONCAT('^(?:-*[^-]){', STR(((43 - ?templateMotifSequenceMatchBeginPositionP28650290) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1301) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP28650MF_03126291, 1, (STRLEN(?targetMotifMatchCigarP28650MF_03126291) - STRLEN(REPLACE(?targetMotifMatchCigarP28650MF_03126291, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1301), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP28650MF_03126291, 1, (STRLEN(?targetMotifMatchCigarP28650MF_03126291) - STRLEN(REPLACE(?targetMotifMatchCigarP28650MF_03126291, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1301), '}'), '')))), '[^-]', ''))) AS ?step2302) .
BIND(((?step2302 + ?targetMotifMatchRegionMatchBeginPositionMF_03126292) - 1) AS ?thisPositionOn81) .
BIND(?thisPositionOn81 AS ?thisPositionOn82) .
BIND(?this AS ?pfs1t303) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn81))) AS ?pfsb78) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn82))) AS ?pfse79) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn81, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_03126a77')) AS ?annotation77) .
BIND(?this AS ?pfs76) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch308 faldo:location ?templateMotifSequenceMatchRegionP28650309 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP28650311 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP28650MF_03126304 .
?templateMotifSequenceMatchRegionP28650309 faldo:begin ?templateMotifSequenceMatchBeginP28650310 .
?templateMotifSequenceMatchBeginP28650310 faldo:position ?templateMotifSequenceMatchBeginPositionP28650305 ;
faldo:reference isoform:P28650-1 .
?templateMotifSequenceProfileAlignmentOperationP28650311 edam:has_input signature:MF_03126 ;
rdf:type edam:operation_0300 .
?targetMotifMatch312 faldo:location ?targetMotifMatchRegionMatch313 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03126315 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP28650MF_03126306 .
?targetMotifMatchRegionMatch313 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03126314 .
?targetMotifMatchRegionMatchBeginMF_03126314 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03126307 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03126315 edam:has_input signature:MF_03126 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP28650MF_03126304, 1, (STRLEN(?templateMotifCigarP28650MF_03126304) - STRLEN(REPLACE(?templateMotifCigarP28650MF_03126304, CONCAT('^(?:-*[^-]){', STR(((70 - ?templateMotifSequenceMatchBeginPositionP28650305) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1316) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP28650MF_03126306, 1, (STRLEN(?targetMotifMatchCigarP28650MF_03126306) - STRLEN(REPLACE(?targetMotifMatchCigarP28650MF_03126306, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1316), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP28650MF_03126306, 1, (STRLEN(?targetMotifMatchCigarP28650MF_03126306) - STRLEN(REPLACE(?targetMotifMatchCigarP28650MF_03126306, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1316), '}'), '')))), '[^-]', ''))) AS ?step2317) .
BIND(((?step2317 + ?targetMotifMatchRegionMatchBeginPositionMF_03126307) - 1) AS ?thisPositionOn88) .
BIND(?thisPositionOn88 AS ?thisPositionOn89) .
BIND(?this AS ?pfs1t318) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn88))) AS ?pfsb85) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn89))) AS ?pfse86) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn88, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_03126a84')) AS ?annotation84) .
BIND(?this AS ?pfs83) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch323 faldo:location ?templateMotifSequenceMatchRegionP28650324 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP28650326 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP28650MF_03126319 .
?templateMotifSequenceMatchRegionP28650324 faldo:begin ?templateMotifSequenceMatchBeginP28650325 .
?templateMotifSequenceMatchBeginP28650325 faldo:position ?templateMotifSequenceMatchBeginPositionP28650320 ;
faldo:reference isoform:P28650-1 .
?templateMotifSequenceProfileAlignmentOperationP28650326 edam:has_input signature:MF_03126 ;
rdf:type edam:operation_0300 .
?targetMotifMatch327 faldo:location ?targetMotifMatchRegionMatch328 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03126330 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP28650MF_03126321 .
?targetMotifMatchRegionMatch328 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03126329 .
?targetMotifMatchRegionMatchBeginMF_03126329 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03126322 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03126330 edam:has_input signature:MF_03126 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP28650MF_03126319, 1, (STRLEN(?templateMotifCigarP28650MF_03126319) - STRLEN(REPLACE(?templateMotifCigarP28650MF_03126319, CONCAT('^(?:-*[^-]){', STR(((43 - ?templateMotifSequenceMatchBeginPositionP28650320) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1331) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP28650MF_03126321, 1, (STRLEN(?targetMotifMatchCigarP28650MF_03126321) - STRLEN(REPLACE(?targetMotifMatchCigarP28650MF_03126321, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1331), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP28650MF_03126321, 1, (STRLEN(?targetMotifMatchCigarP28650MF_03126321) - STRLEN(REPLACE(?targetMotifMatchCigarP28650MF_03126321, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1331), '}'), '')))), '[^-]', ''))) AS ?step2332) .
BIND(((?step2332 + ?targetMotifMatchRegionMatchBeginPositionMF_03126322) - 1) AS ?thisPositionOn96) .
BIND(?thisPositionOn96 AS ?thisPositionOn97) .
BIND(?this AS ?pfs1t333) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn96))) AS ?pfsb92) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn97))) AS ?pfse93) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn96, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_03126a91')) AS ?annotation91) .
BIND(?this AS ?pfs90) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch338 faldo:location ?templateMotifSequenceMatchRegionP28650339 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP28650341 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP28650MF_03126334 .
?templateMotifSequenceMatchRegionP28650339 faldo:begin ?templateMotifSequenceMatchBeginP28650340 .
?templateMotifSequenceMatchBeginP28650340 faldo:position ?templateMotifSequenceMatchBeginPositionP28650335 ;
faldo:reference isoform:P28650-1 .
?templateMotifSequenceProfileAlignmentOperationP28650341 edam:has_input signature:MF_03126 ;
rdf:type edam:operation_0300 .
?targetMotifMatch342 faldo:location ?targetMotifMatchRegionMatch343 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03126345 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP28650MF_03126336 .
?targetMotifMatchRegionMatch343 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03126344 .
?targetMotifMatchRegionMatchBeginMF_03126344 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03126337 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03126345 edam:has_input signature:MF_03126 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP28650MF_03126334, 1, (STRLEN(?templateMotifCigarP28650MF_03126334) - STRLEN(REPLACE(?templateMotifCigarP28650MF_03126334, CONCAT('^(?:-*[^-]){', STR(((163 - ?templateMotifSequenceMatchBeginPositionP28650335) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1346) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP28650MF_03126336, 1, (STRLEN(?targetMotifMatchCigarP28650MF_03126336) - STRLEN(REPLACE(?targetMotifMatchCigarP28650MF_03126336, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1346), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP28650MF_03126336, 1, (STRLEN(?targetMotifMatchCigarP28650MF_03126336) - STRLEN(REPLACE(?targetMotifMatchCigarP28650MF_03126336, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1346), '}'), '')))), '[^-]', ''))) AS ?step2347) .
BIND(((?step2347 + ?targetMotifMatchRegionMatchBeginPositionMF_03126337) - 1) AS ?thisPositionOn103) .
BIND(?thisPositionOn103 AS ?thisPositionOn104) .
BIND(?this AS ?pfs1t348) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn103))) AS ?pfsb100) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn104))) AS ?pfse101) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn103, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_03126a99')) AS ?annotation99) .
BIND(?this AS ?pfs98) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch353 faldo:location ?templateMotifSequenceMatchRegionP28650354 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP28650356 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP28650MF_03126349 .
?templateMotifSequenceMatchRegionP28650354 faldo:begin ?templateMotifSequenceMatchBeginP28650355 .
?templateMotifSequenceMatchBeginP28650355 faldo:position ?templateMotifSequenceMatchBeginPositionP28650350 ;
faldo:reference isoform:P28650-1 .
?templateMotifSequenceProfileAlignmentOperationP28650356 edam:has_input signature:MF_03126 ;
rdf:type edam:operation_0300 .
?targetMotifMatch357 faldo:location ?targetMotifMatchRegionMatch358 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03126360 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP28650MF_03126351 .
?targetMotifMatchRegionMatch358 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03126359 .
?targetMotifMatchRegionMatchBeginMF_03126359 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03126352 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03126360 edam:has_input signature:MF_03126 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP28650MF_03126349, 1, (STRLEN(?templateMotifCigarP28650MF_03126349) - STRLEN(REPLACE(?templateMotifCigarP28650MF_03126349, CONCAT('^(?:-*[^-]){', STR(((177 - ?templateMotifSequenceMatchBeginPositionP28650350) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1361) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP28650MF_03126351, 1, (STRLEN(?targetMotifMatchCigarP28650MF_03126351) - STRLEN(REPLACE(?targetMotifMatchCigarP28650MF_03126351, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1361), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP28650MF_03126351, 1, (STRLEN(?targetMotifMatchCigarP28650MF_03126351) - STRLEN(REPLACE(?targetMotifMatchCigarP28650MF_03126351, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1361), '}'), '')))), '[^-]', ''))) AS ?step2362) .
BIND(((?step2362 + ?targetMotifMatchRegionMatchBeginPositionMF_03126352) - 1) AS ?thisPositionOn110) .
BIND(?thisPositionOn110 AS ?thisPositionOn111) .
BIND(?this AS ?pfs1t363) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn110))) AS ?pfsb107) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn111))) AS ?pfse108) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn110, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_03126a106')) AS ?annotation106) .
BIND(?this AS ?pfs105) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch368 faldo:location ?templateMotifSequenceMatchRegionP28650369 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP28650371 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP28650MF_03126364 .
?templateMotifSequenceMatchRegionP28650369 faldo:begin ?templateMotifSequenceMatchBeginP28650370 .
?templateMotifSequenceMatchBeginP28650370 faldo:position ?templateMotifSequenceMatchBeginPositionP28650365 ;
faldo:reference isoform:P28650-1 .
?templateMotifSequenceProfileAlignmentOperationP28650371 edam:has_input signature:MF_03126 ;
rdf:type edam:operation_0300 .
?targetMotifMatch372 faldo:location ?targetMotifMatchRegionMatch373 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03126375 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP28650MF_03126366 .
?targetMotifMatchRegionMatch373 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03126374 .
?targetMotifMatchRegionMatchBeginMF_03126374 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03126367 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03126375 edam:has_input signature:MF_03126 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP28650MF_03126364, 1, (STRLEN(?templateMotifCigarP28650MF_03126364) - STRLEN(REPLACE(?templateMotifCigarP28650MF_03126364, CONCAT('^(?:-*[^-]){', STR(((256 - ?templateMotifSequenceMatchBeginPositionP28650365) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1376) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP28650MF_03126366, 1, (STRLEN(?targetMotifMatchCigarP28650MF_03126366) - STRLEN(REPLACE(?targetMotifMatchCigarP28650MF_03126366, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1376), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP28650MF_03126366, 1, (STRLEN(?targetMotifMatchCigarP28650MF_03126366) - STRLEN(REPLACE(?targetMotifMatchCigarP28650MF_03126366, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1376), '}'), '')))), '[^-]', ''))) AS ?step2377) .
BIND(((?step2377 + ?targetMotifMatchRegionMatchBeginPositionMF_03126367) - 1) AS ?thisPositionOn117) .
BIND(?thisPositionOn117 AS ?thisPositionOn118) .
BIND(?this AS ?pfs1t378) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn117))) AS ?pfsb114) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn118))) AS ?pfse115) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn117, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_03126a113')) AS ?annotation113) .
BIND(?this AS ?pfs112) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch383 faldo:location ?templateMotifSequenceMatchRegionP28650384 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP28650386 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP28650MF_03126379 .
?templateMotifSequenceMatchRegionP28650384 faldo:begin ?templateMotifSequenceMatchBeginP28650385 .
?templateMotifSequenceMatchBeginP28650385 faldo:position ?templateMotifSequenceMatchBeginPositionP28650380 ;
faldo:reference isoform:P28650-1 .
?templateMotifSequenceProfileAlignmentOperationP28650386 edam:has_input signature:MF_03126 ;
rdf:type edam:operation_0300 .
?targetMotifMatch387 faldo:location ?targetMotifMatchRegionMatch388 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03126390 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP28650MF_03126381 .
?targetMotifMatchRegionMatch388 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03126389 .
?targetMotifMatchRegionMatchBeginMF_03126389 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03126382 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03126390 edam:has_input signature:MF_03126 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP28650MF_03126379, 1, (STRLEN(?templateMotifCigarP28650MF_03126379) - STRLEN(REPLACE(?templateMotifCigarP28650MF_03126379, CONCAT('^(?:-*[^-]){', STR(((271 - ?templateMotifSequenceMatchBeginPositionP28650380) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1391) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP28650MF_03126381, 1, (STRLEN(?targetMotifMatchCigarP28650MF_03126381) - STRLEN(REPLACE(?targetMotifMatchCigarP28650MF_03126381, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1391), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP28650MF_03126381, 1, (STRLEN(?targetMotifMatchCigarP28650MF_03126381) - STRLEN(REPLACE(?targetMotifMatchCigarP28650MF_03126381, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1391), '}'), '')))), '[^-]', ''))) AS ?step2392) .
BIND(((?step2392 + ?targetMotifMatchRegionMatchBeginPositionMF_03126382) - 1) AS ?thisPositionOn124) .
BIND(?thisPositionOn124 AS ?thisPositionOn125) .
BIND(?this AS ?pfs1t393) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn124))) AS ?pfsb121) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn125))) AS ?pfse122) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn124, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_03126a120')) AS ?annotation120) .
BIND(?this AS ?pfs119) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch398 faldo:location ?templateMotifSequenceMatchRegionP28650399 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP28650401 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP28650MF_03126394 .
?templateMotifSequenceMatchRegionP28650399 faldo:begin ?templateMotifSequenceMatchBeginP28650400 .
?templateMotifSequenceMatchBeginP28650400 faldo:position ?templateMotifSequenceMatchBeginPositionP28650395 ;
faldo:reference isoform:P28650-1 .
?templateMotifSequenceProfileAlignmentOperationP28650401 edam:has_input signature:MF_03126 ;
rdf:type edam:operation_0300 .
?targetMotifMatch402 faldo:location ?targetMotifMatchRegionMatch403 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03126405 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP28650MF_03126396 .
?targetMotifMatchRegionMatch403 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03126404 .
?targetMotifMatchRegionMatchBeginMF_03126404 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03126397 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03126405 edam:has_input signature:MF_03126 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP28650MF_03126394, 1, (STRLEN(?templateMotifCigarP28650MF_03126394) - STRLEN(REPLACE(?templateMotifCigarP28650MF_03126394, CONCAT('^(?:-*[^-]){', STR(((335 - ?templateMotifSequenceMatchBeginPositionP28650395) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1406) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP28650MF_03126396, 1, (STRLEN(?targetMotifMatchCigarP28650MF_03126396) - STRLEN(REPLACE(?targetMotifMatchCigarP28650MF_03126396, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1406), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP28650MF_03126396, 1, (STRLEN(?targetMotifMatchCigarP28650MF_03126396) - STRLEN(REPLACE(?targetMotifMatchCigarP28650MF_03126396, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1406), '}'), '')))), '[^-]', ''))) AS ?step2407) .
BIND(((?step2407 + ?targetMotifMatchRegionMatchBeginPositionMF_03126397) - 1) AS ?thisPositionOn131) .
BIND(?thisPositionOn131 AS ?thisPositionOn132) .
BIND(?this AS ?pfs1t408) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn131))) AS ?pfsb128) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn132))) AS ?pfse129) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn131, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_03126a127')) AS ?annotation127) .
BIND(?this AS ?pfs126) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch413 faldo:location ?templateMotifSequenceMatchRegionP28650414 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP28650416 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP28650MF_03126409 .
?templateMotifSequenceMatchRegionP28650414 faldo:begin ?templateMotifSequenceMatchBeginP28650415 .
?templateMotifSequenceMatchBeginP28650415 faldo:position ?templateMotifSequenceMatchBeginPositionP28650410 ;
faldo:reference isoform:P28650-1 .
?templateMotifSequenceProfileAlignmentOperationP28650416 edam:has_input signature:MF_03126 ;
rdf:type edam:operation_0300 .
?targetMotifMatch417 faldo:location ?targetMotifMatchRegionMatch418 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03126420 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP28650MF_03126411 .
?targetMotifMatchRegionMatch418 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03126419 .
?targetMotifMatchRegionMatchBeginMF_03126419 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03126412 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03126420 edam:has_input signature:MF_03126 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP28650MF_03126409, 1, (STRLEN(?templateMotifCigarP28650MF_03126409) - STRLEN(REPLACE(?templateMotifCigarP28650MF_03126409, CONCAT('^(?:-*[^-]){', STR(((337 - ?templateMotifSequenceMatchBeginPositionP28650410) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1421) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP28650MF_03126411, 1, (STRLEN(?targetMotifMatchCigarP28650MF_03126411) - STRLEN(REPLACE(?targetMotifMatchCigarP28650MF_03126411, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1421), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP28650MF_03126411, 1, (STRLEN(?targetMotifMatchCigarP28650MF_03126411) - STRLEN(REPLACE(?targetMotifMatchCigarP28650MF_03126411, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1421), '}'), '')))), '[^-]', ''))) AS ?step2422) .
BIND(((?step2422 + ?targetMotifMatchRegionMatchBeginPositionMF_03126412) - 1) AS ?thisPositionOn138) .
BIND(?thisPositionOn138 AS ?thisPositionOn139) .
BIND(?this AS ?pfs1t423) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn138))) AS ?pfsb135) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn139))) AS ?pfse136) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn138, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_03126a134')) AS ?annotation134) .
BIND(?this AS ?pfs133) .
}
}
"xsd:string |
