| http://purl.uniprot.org/unirules/MF_03168#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:856092 up:source unirule:MF_03168 .
_:856093 up:source unirule:MF_03168 .
_:856094 up:source unirule:MF_03168 .
_:856095 up:source unirule:MF_03168 .
_:856096 up:source unirule:MF_03168 .
_:856097 up:source unirule:MF_03168 .
_:856098 up:source unirule:MF_03168 .
_:856099 up:source unirule:MF_03168 .
_:856100 up:source unirule:MF_03168 .
_:856101 up:source unirule:MF_03168 .
_:856102 up:source unirule:MF_03168 .
_:856103 up:source unirule:MF_03168 .
_:856104 up:source unirule:MF_03168 .
_:856105 up:source unirule:MF_03168 .
_:856106 up:source unirule:MF_03168 .
_:856107 up:source unirule:MF_03168 .
_:856108 up:source unirule:MF_03168 .
_:856109 up:source unirule:MF_03168 .
_:856110 up:source unirule:MF_03168 .
_:856111 up:source unirule:MF_03168 .
_:856112 up:source unirule:MF_03168 .
_:856113 up:source unirule:MF_03168 .
_:856114 up:source unirule:MF_03168 .
_:856115 up:source unirule:MF_03168 .
_:856116 up:source unirule:MF_03168 .
_:856117 up:source unirule:MF_03168 .
_:856118 up:source unirule:MF_03168 .
_:856119 up:source unirule:MF_03168 .
_:856120 up:source unirule:MF_03168 .
_:856121 up:source unirule:MF_03168 .
_:856122 up:source unirule:MF_03168 .
_:856123 up:source unirule:MF_03168 .
_:856124 up:source unirule:MF_03168 .
_:856125 up:source unirule:MF_03168 .
_:856126 up:source unirule:MF_03168 .
_:856127 up:source unirule:MF_03168 .
_:856128 up:source unirule:MF_03168 .
_:856129 up:source unirule:MF_03168 .
_:856130 up:source unirule:MF_03168 .
_:856131 up:source unirule:MF_03168 .
_:856132 up:source unirule:MF_03168 .
_:856133 up:source unirule:MF_03168 .
_:856134 up:source unirule:MF_03168 .
_:856135 up:source unirule:MF_03168 .
_:856136 up:source unirule:MF_03168 .
?this up:annotation ?annotation0 ,
?annotation2 ,
?annotation3 ,
?annotation4 ;
up:classifiedWith GO:0004017 ,
GO:0005758 ,
GO:0006172 ,
GO:0046033 ,
GO:0046034 ,
keyword:418 ,
keyword:496 ,
keyword:547 ,
keyword:67 ,
keyword:808 .
?annotation0 up:activity ?activity1 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity1 up:catalyticActivity ;
up:enzymeClass .
?annotation2 a up:Subunit_Annotation ;
rdfs:comment 'Monomer.' .
?annotation3 a up:Domain_Annotation ;
rdfs:comment 'Consists of three domains, a large central CORE domain and two small peripheral domains, NMPbind and LID, which undergo movements during catalysis. The LID domain closes over the site of phosphoryl transfer upon ATP binding. Assembling and disassembling the active center during each catalytic cycle provides an effective means to prevent ATP hydrolysis.' .
?annotation4 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the adenylate kinase family. AK2 subfamily.' .
?case5 up:classifiedWith keyword:7 .
?case6 up:classifiedWith keyword:1015 .
?case9 up:alternativeName ?name11 ,
?name12 ,
?name13 ;
up:recommendedName ?name10 .
?name10 up:ecName '2.7.4.3' ;
up:fullName 'Adenylate kinase 2, mitochondrial' ;
up:shortName 'AK 2' ;
rdf:type up:Structured_Name .
?name11 up:fullName 'ATP-AMP transphosphorylase 2' ;
rdf:type up:Structured_Name .
?name12 up:fullName 'ATP:AMP phosphotransferase' ;
rdf:type up:Structured_Name .
?name13 up:fullName 'Adenylate monophosphate kinase' ;
rdf:type up:Structured_Name .
?case16 up:alternativeName ?name18 ,
?name19 ,
?name20 ,
?name21 ;
up:classifiedWith GO:0005737 ,
keyword:963 ;
up:recommendedName ?name17 .
?name17 up:ecName '2.7.4.3' ;
up:fullName 'Adenylate kinase' ;
rdf:type up:Structured_Name .
?name18 up:fullName 'ATP-AMP transphosphorylase' ;
rdf:type up:Structured_Name .
?name19 up:fullName 'ATP:AMP phosphotransferase' ;
rdf:type up:Structured_Name .
?name20 up:fullName 'Adenylate kinase cytosolic and mitochondrial' ;
rdf:type up:Structured_Name .
?name21 up:fullName 'Adenylate monophosphate kinase' ;
rdf:type up:Structured_Name .
?pfs22 up:annotation ?annotation23 .
?annotation23 faldo:begin ?pfsb24 ;
faldo:end ?pfse25 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'N-acetylserine' .
?pfsb24 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?pfse25 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfs28 up:annotation ?annotation29 .
?annotation29 faldo:begin ?pfsb30 ;
faldo:end ?pfse31 ;
rdf:type up:Disulfide_Bond_Annotation .
?pfsb30 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?pfse31 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfs34 up:annotation ?annotation35 .
?annotation35 faldo:begin ?pfsb36 ;
faldo:end ?pfse37 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'NMPbind' .
?pfsb36 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?pfse37 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?pfs40 up:annotation ?annotation41 .
?annotation41 faldo:begin ?pfsb42 ;
faldo:end ?pfse43 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'LID' .
?pfsb42 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?pfse43 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?pfs46 up:annotation ?annotation47 .
?annotation47 faldo:begin ?pfsb48 ;
faldo:end ?pfse49 ;
up:ligand ?ligand50 ;
rdf:type up:Binding_Site_Annotation .
?pfsb48 faldo:position ?thisPositionOn51 ;
rdf:type faldo:ExactPosition .
?pfse49 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?ligand50 rdfs:subClassOf chebi:30616 .
?pfs53 up:annotation ?annotation54 .
?annotation54 faldo:begin ?pfsb55 ;
faldo:end ?pfse56 ;
up:ligand ?ligand57 ;
rdf:type up:Binding_Site_Annotation .
?pfsb55 faldo:position ?thisPositionOn58 ;
rdf:type faldo:ExactPosition .
?pfse56 faldo:position ?thisPositionOn59 ;
rdf:type faldo:ExactPosition .
?ligand57 rdfs:subClassOf chebi:30616 .
?pfs60 up:annotation ?annotation61 .
?annotation61 faldo:begin ?pfsb62 ;
faldo:end ?pfse63 ;
up:ligand ?ligand64 ;
rdf:type up:Binding_Site_Annotation .
?pfsb62 faldo:position ?thisPositionOn65 ;
rdf:type faldo:ExactPosition .
?pfse63 faldo:position ?thisPositionOn66 ;
rdf:type faldo:ExactPosition .
?ligand64 rdfs:subClassOf chebi:456215 .
?pfs67 up:annotation ?annotation68 .
?annotation68 faldo:begin ?pfsb69 ;
faldo:end ?pfse70 ;
up:ligand ?ligand71 ;
rdf:type up:Binding_Site_Annotation .
?pfsb69 faldo:position ?thisPositionOn72 ;
rdf:type faldo:ExactPosition .
?pfse70 faldo:position ?thisPositionOn73 ;
rdf:type faldo:ExactPosition .
?ligand71 rdfs:subClassOf chebi:456215 .
?pfs74 up:annotation ?annotation75 .
?annotation75 faldo:begin ?pfsb76 ;
faldo:end ?pfse77 ;
up:ligand ?ligand78 ;
rdf:type up:Binding_Site_Annotation .
?pfsb76 faldo:position ?thisPositionOn79 ;
rdf:type faldo:ExactPosition .
?pfse77 faldo:position ?thisPositionOn80 ;
rdf:type faldo:ExactPosition .
?ligand78 rdfs:subClassOf chebi:30616 .
?pfs81 up:annotation ?annotation82 .
?annotation82 faldo:begin ?pfsb83 ;
faldo:end ?pfse84 ;
up:ligand ?ligand85 ;
rdf:type up:Binding_Site_Annotation .
?pfsb83 faldo:position ?thisPositionOn86 ;
rdf:type faldo:ExactPosition .
?pfse84 faldo:position ?thisPositionOn87 ;
rdf:type faldo:ExactPosition .
?ligand85 rdfs:subClassOf chebi:456215 .
?pfs88 up:annotation ?annotation89 .
?annotation89 faldo:begin ?pfsb90 ;
faldo:end ?pfse91 ;
up:ligand ?ligand92 ;
rdf:type up:Binding_Site_Annotation .
?pfsb90 faldo:position ?thisPositionOn93 ;
rdf:type faldo:ExactPosition .
?pfse91 faldo:position ?thisPositionOn94 ;
rdf:type faldo:ExactPosition .
?ligand92 rdfs:subClassOf chebi:456215 .
?pfs95 up:annotation ?annotation96 .
?annotation96 faldo:begin ?pfsb97 ;
faldo:end ?pfse98 ;
up:ligand ?ligand99 ;
rdf:type up:Binding_Site_Annotation .
?pfsb97 faldo:position ?thisPositionOn100 ;
rdf:type faldo:ExactPosition .
?pfse98 faldo:position ?thisPositionOn101 ;
rdf:type faldo:ExactPosition .
?ligand99 rdfs:subClassOf chebi:456215 .
?pfs102 up:annotation ?annotation103 .
?annotation103 faldo:begin ?pfsb104 ;
faldo:end ?pfse105 ;
up:ligand ?ligand106 ;
rdf:type up:Binding_Site_Annotation .
?pfsb104 faldo:position ?thisPositionOn107 ;
rdf:type faldo:ExactPosition .
?pfse105 faldo:position ?thisPositionOn108 ;
rdf:type faldo:ExactPosition .
?ligand106 rdfs:subClassOf chebi:30616 .
?pfs109 up:annotation ?annotation110 .
?annotation110 faldo:begin ?pfsb111 ;
faldo:end ?pfse112 ;
up:ligand ?ligand113 ;
rdf:type up:Binding_Site_Annotation .
?pfsb111 faldo:position ?thisPositionOn114 ;
rdf:type faldo:ExactPosition .
?pfse112 faldo:position ?thisPositionOn115 ;
rdf:type faldo:ExactPosition .
?ligand113 rdfs:subClassOf chebi:456215 .
?pfs116 up:annotation ?annotation117 .
?annotation117 faldo:begin ?pfsb118 ;
faldo:end ?pfse119 ;
up:ligand ?ligand120 ;
rdf:type up:Binding_Site_Annotation .
?pfsb118 faldo:position ?thisPositionOn121 ;
rdf:type faldo:ExactPosition .
?pfse119 faldo:position ?thisPositionOn122 ;
rdf:type faldo:ExactPosition .
?ligand120 rdfs:subClassOf chebi:456215 .
?pfs123 up:annotation ?annotation124 .
?annotation124 faldo:begin ?pfsb125 ;
faldo:end ?pfse126 ;
rdf:type up:Propeptide_Annotation ;
rdfs:comment 'Removed in mature form' .
?pfsb125 faldo:position ?thisPositionOn127 ;
rdf:type faldo:ExactPosition .
?pfse126 faldo:position ?thisPositionOn128 ;
rdf:type faldo:ExactPosition .
?pfs129 up:annotation ?annotation130 .
?annotation130 faldo:begin ?pfsb131 ;
faldo:end ?pfse132 ;
rdf:type up:Chain_Annotation ;
rdfs:comment 'Adenylate kinase' .
?pfsb131 faldo:position ?thisPositionOn133 ;
rdf:type faldo:ExactPosition .
?pfse132 faldo:position ?thisPositionOn134 ;
rdf:type faldo:ExactPosition .
?pfs135 up:annotation ?annotation136 .
?annotation136 faldo:begin ?pfsb137 ;
faldo:end ?pfse138 ;
rdf:type up:Initiator_Methionine_Annotation ;
rdfs:comment 'Removed' .
?pfsb137 faldo:position ?thisPositionOn139 ;
rdf:type faldo:ExactPosition .
?pfse138 faldo:position ?thisPositionOn140 ;
rdf:type faldo:ExactPosition .
_:856137 a rdf:Statement ;
up:attribution _:856092 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation0 .
_:856138 a rdf:Statement ;
up:attribution _:856093 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:856139 a rdf:Statement ;
up:attribution _:856094 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:856140 a rdf:Statement ;
up:attribution _:856095 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:856141 a rdf:Statement ;
up:attribution _:856096 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:856142 a rdf:Statement ;
up:attribution _:856097 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:418 .
_:856143 a rdf:Statement ;
up:attribution _:856098 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:496 .
_:856144 a rdf:Statement ;
up:attribution _:856099 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:856145 a rdf:Statement ;
up:attribution _:856100 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:856146 a rdf:Statement ;
up:attribution _:856101 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005758 .
_:856147 a rdf:Statement ;
up:attribution _:856102 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004017 .
_:856148 a rdf:Statement ;
up:attribution _:856103 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006172 .
_:856149 a rdf:Statement ;
up:attribution _:856104 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0046033 .
_:856150 a rdf:Statement ;
up:attribution _:856105 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0046034 .
_:856151 a rdf:Statement ;
up:attribution _:856106 ;
rdf:subject ?case5 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:7 .
_:856152 a rdf:Statement ;
up:attribution _:856107 ;
rdf:subject ?case6 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1015 .
_:856153 a rdf:Statement ;
up:attribution _:856108 ;
rdf:subject ?case9 ;
rdf:predicate up:recommendedName ;
rdf:object ?name10 .
_:856154 a rdf:Statement ;
up:attribution _:856109 ;
rdf:subject ?case9 ;
rdf:predicate up:alternativeName ;
rdf:object ?name11 .
_:856155 a rdf:Statement ;
up:attribution _:856110 ;
rdf:subject ?case9 ;
rdf:predicate up:alternativeName ;
rdf:object ?name12 .
_:856156 a rdf:Statement ;
up:attribution _:856111 ;
rdf:subject ?case9 ;
rdf:predicate up:alternativeName ;
rdf:object ?name13 .
_:856157 a rdf:Statement ;
up:attribution _:856112 ;
rdf:subject ?case16 ;
rdf:predicate up:recommendedName ;
rdf:object ?name17 .
_:856158 a rdf:Statement ;
up:attribution _:856113 ;
rdf:subject ?case16 ;
rdf:predicate up:alternativeName ;
rdf:object ?name18 .
_:856159 a rdf:Statement ;
up:attribution _:856114 ;
rdf:subject ?case16 ;
rdf:predicate up:alternativeName ;
rdf:object ?name19 .
_:856160 a rdf:Statement ;
up:attribution _:856115 ;
rdf:subject ?case16 ;
rdf:predicate up:alternativeName ;
rdf:object ?name20 .
_:856161 a rdf:Statement ;
up:attribution _:856116 ;
rdf:subject ?case16 ;
rdf:predicate up:alternativeName ;
rdf:object ?name21 .
_:856162 a rdf:Statement ;
up:attribution _:856117 ;
rdf:subject ?case16 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:856163 a rdf:Statement ;
up:attribution _:856118 ;
rdf:subject ?case16 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:856164 a rdf:Statement ;
up:source unirule:MF_03168 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:856165 a rdf:Statement ;
up:attribution _:856119 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:856166 a rdf:Statement ;
up:source unirule:MF_03168 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:856167 a rdf:Statement ;
up:attribution _:856120 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:856168 a rdf:Statement ;
up:source unirule:MF_03168 ;
rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
_:856169 a rdf:Statement ;
up:attribution _:856121 ;
rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
_:856170 a rdf:Statement ;
up:source unirule:MF_03168 ;
rdf:subject ?pfs40 ;
rdf:predicate up:annotation ;
rdf:object ?annotation41 .
_:856171 a rdf:Statement ;
up:attribution _:856122 ;
rdf:subject ?pfs40 ;
rdf:predicate up:annotation ;
rdf:object ?annotation41 .
_:856172 a rdf:Statement ;
up:source unirule:MF_03168 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
_:856173 a rdf:Statement ;
up:attribution _:856123 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
_:856174 a rdf:Statement ;
up:source unirule:MF_03168 ;
rdf:subject ?pfs53 ;
rdf:predicate up:annotation ;
rdf:object ?annotation54 .
_:856175 a rdf:Statement ;
up:attribution _:856124 ;
rdf:subject ?pfs53 ;
rdf:predicate up:annotation ;
rdf:object ?annotation54 .
_:856176 a rdf:Statement ;
up:source unirule:MF_03168 ;
rdf:subject ?pfs60 ;
rdf:predicate up:annotation ;
rdf:object ?annotation61 .
_:856177 a rdf:Statement ;
up:attribution _:856125 ;
rdf:subject ?pfs60 ;
rdf:predicate up:annotation ;
rdf:object ?annotation61 .
_:856178 a rdf:Statement ;
up:source unirule:MF_03168 ;
rdf:subject ?pfs67 ;
rdf:predicate up:annotation ;
rdf:object ?annotation68 .
_:856179 a rdf:Statement ;
up:attribution _:856126 ;
rdf:subject ?pfs67 ;
rdf:predicate up:annotation ;
rdf:object ?annotation68 .
_:856180 a rdf:Statement ;
up:source unirule:MF_03168 ;
rdf:subject ?pfs74 ;
rdf:predicate up:annotation ;
rdf:object ?annotation75 .
_:856181 a rdf:Statement ;
up:attribution _:856127 ;
rdf:subject ?pfs74 ;
rdf:predicate up:annotation ;
rdf:object ?annotation75 .
_:856182 a rdf:Statement ;
up:source unirule:MF_03168 ;
rdf:subject ?pfs81 ;
rdf:predicate up:annotation ;
rdf:object ?annotation82 .
_:856183 a rdf:Statement ;
up:attribution _:856128 ;
rdf:subject ?pfs81 ;
rdf:predicate up:annotation ;
rdf:object ?annotation82 .
_:856184 a rdf:Statement ;
up:source unirule:MF_03168 ;
rdf:subject ?pfs88 ;
rdf:predicate up:annotation ;
rdf:object ?annotation89 .
_:856185 a rdf:Statement ;
up:attribution _:856129 ;
rdf:subject ?pfs88 ;
rdf:predicate up:annotation ;
rdf:object ?annotation89 .
_:856186 a rdf:Statement ;
up:source unirule:MF_03168 ;
rdf:subject ?pfs95 ;
rdf:predicate up:annotation ;
rdf:object ?annotation96 .
_:856187 a rdf:Statement ;
up:attribution _:856130 ;
rdf:subject ?pfs95 ;
rdf:predicate up:annotation ;
rdf:object ?annotation96 .
_:856188 a rdf:Statement ;
up:source unirule:MF_03168 ;
rdf:subject ?pfs102 ;
rdf:predicate up:annotation ;
rdf:object ?annotation103 .
_:856189 a rdf:Statement ;
up:attribution _:856131 ;
rdf:subject ?pfs102 ;
rdf:predicate up:annotation ;
rdf:object ?annotation103 .
_:856190 a rdf:Statement ;
up:source unirule:MF_03168 ;
rdf:subject ?pfs109 ;
rdf:predicate up:annotation ;
rdf:object ?annotation110 .
_:856191 a rdf:Statement ;
up:attribution _:856132 ;
rdf:subject ?pfs109 ;
rdf:predicate up:annotation ;
rdf:object ?annotation110 .
_:856192 a rdf:Statement ;
up:source unirule:MF_03168 ;
rdf:subject ?pfs116 ;
rdf:predicate up:annotation ;
rdf:object ?annotation117 .
_:856193 a rdf:Statement ;
up:attribution _:856133 ;
rdf:subject ?pfs116 ;
rdf:predicate up:annotation ;
rdf:object ?annotation117 .
_:856194 a rdf:Statement ;
up:source unirule:MF_03168 ;
rdf:subject ?pfs123 ;
rdf:predicate up:annotation ;
rdf:object ?annotation124 .
_:856195 a rdf:Statement ;
up:attribution _:856134 ;
rdf:subject ?pfs123 ;
rdf:predicate up:annotation ;
rdf:object ?annotation124 .
_:856196 a rdf:Statement ;
up:source unirule:MF_03168 ;
rdf:subject ?pfs129 ;
rdf:predicate up:annotation ;
rdf:object ?annotation130 .
_:856197 a rdf:Statement ;
up:attribution _:856135 ;
rdf:subject ?pfs129 ;
rdf:predicate up:annotation ;
rdf:object ?annotation130 .
_:856198 a rdf:Statement ;
up:source unirule:MF_03168 ;
rdf:subject ?pfs135 ;
rdf:predicate up:annotation ;
rdf:object ?annotation136 .
_:856199 a rdf:Statement ;
up:attribution _:856136 ;
rdf:subject ?pfs135 ;
rdf:predicate up:annotation ;
rdf:object ?annotation136 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_03168
#Rule MF_03168 Created by:? on:2013-03-11 Modified by:Andrea Auchincloss on:2025-08-19
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_03168 .
?thisOrganism rdfs:subClassOf+ taxon:2759 .
BIND(URI(CONCAT(STR(?this), '#MF_03168a0')) AS ?annotation0) .
BIND(URI(CONCAT(STR(?this), '#MF_03168a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_03168a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_03168a4')) AS ?annotation4) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch145 faldo:location ?templateMotifSequenceMatchRegionP07170146 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP07170148 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP07170MF_03168141 .
?templateMotifSequenceMatchRegionP07170146 faldo:begin ?templateMotifSequenceMatchBeginP07170147 .
?templateMotifSequenceMatchBeginP07170147 faldo:position ?templateMotifSequenceMatchBeginPositionP07170142 ;
faldo:reference isoform:P07170-1 .
?templateMotifSequenceProfileAlignmentOperationP07170148 edam:has_input signature:MF_03168 ;
rdf:type edam:operation_0300 .
?targetMotifMatch149 faldo:location ?targetMotifMatchRegionMatch150 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03168152 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP07170MF_03168143 .
?targetMotifMatchRegionMatch150 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03168151 .
?targetMotifMatchRegionMatchBeginMF_03168151 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03168144 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03168152 edam:has_input signature:MF_03168 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagacetyl) .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:4930 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07170MF_03168141, 1, (STRLEN(?templateMotifCigarP07170MF_03168141) - STRLEN(REPLACE(?templateMotifCigarP07170MF_03168141, CONCAT('^(?:-*[^-]){', STR(((3 - ?templateMotifSequenceMatchBeginPositionP07170142) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1153) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07170MF_03168143, 1, (STRLEN(?targetMotifMatchCigarP07170MF_03168143) - STRLEN(REPLACE(?targetMotifMatchCigarP07170MF_03168143, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1153), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07170MF_03168143, 1, (STRLEN(?targetMotifMatchCigarP07170MF_03168143) - STRLEN(REPLACE(?targetMotifMatchCigarP07170MF_03168143, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1153), '}'), '')))), '[^-]', ''))) AS ?step2154) .
BIND(((?step2154 + ?targetMotifMatchRegionMatchBeginPositionMF_03168144) - 1) AS ?thisPositionOn26) .
BIND(?thisPositionOn26 AS ?thisPositionOn27) .
BIND(?this AS ?pfs1t155) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb24) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse25) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn26, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_03168a23')) AS ?annotation23) .
BIND(?this AS ?pfs22) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch160 faldo:location ?templateMotifSequenceMatchRegionP54819161 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP54819163 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP54819MF_03168156 .
?templateMotifSequenceMatchRegionP54819161 faldo:begin ?templateMotifSequenceMatchBeginP54819162 .
?templateMotifSequenceMatchBeginP54819162 faldo:position ?templateMotifSequenceMatchBeginPositionP54819157 ;
faldo:reference isoform:P54819-1 .
?templateMotifSequenceProfileAlignmentOperationP54819163 edam:has_input signature:MF_03168 ;
rdf:type edam:operation_0300 .
?targetMotifMatch164 faldo:location ?targetMotifMatchRegionMatch165 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03168167 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP54819MF_03168158 .
?targetMotifMatchRegionMatch165 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03168166 .
?targetMotifMatchRegionMatchBeginMF_03168166 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03168159 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03168167 edam:has_input signature:MF_03168 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagdisulfid) .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:7742 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP54819MF_03168156, 1, (STRLEN(?templateMotifCigarP54819MF_03168156) - STRLEN(REPLACE(?templateMotifCigarP54819MF_03168156, CONCAT('^(?:-*[^-]){', STR(((42 - ?templateMotifSequenceMatchBeginPositionP54819157) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1168) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP54819MF_03168158, 1, (STRLEN(?targetMotifMatchCigarP54819MF_03168158) - STRLEN(REPLACE(?targetMotifMatchCigarP54819MF_03168158, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1168), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP54819MF_03168158, 1, (STRLEN(?targetMotifMatchCigarP54819MF_03168158) - STRLEN(REPLACE(?targetMotifMatchCigarP54819MF_03168158, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1168), '}'), '')))), '[^-]', ''))) AS ?step2169) .
BIND(((?step2169 + ?targetMotifMatchRegionMatchBeginPositionMF_03168159) - 1) AS ?thisPositionOn32) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP54819MF_03168156, 1, (STRLEN(?templateMotifCigarP54819MF_03168156) - STRLEN(REPLACE(?templateMotifCigarP54819MF_03168156, CONCAT('^(?:-*[^-]){', STR(((92 - ?templateMotifSequenceMatchBeginPositionP54819157) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1170) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP54819MF_03168158, 1, (STRLEN(?targetMotifMatchCigarP54819MF_03168158) - STRLEN(REPLACE(?targetMotifMatchCigarP54819MF_03168158, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1170), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP54819MF_03168158, 1, (STRLEN(?targetMotifMatchCigarP54819MF_03168158) - STRLEN(REPLACE(?targetMotifMatchCigarP54819MF_03168158, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1170), '}'), '')))), '[^-]', ''))) AS ?step2171) .
BIND(((?step2171 + ?targetMotifMatchRegionMatchBeginPositionMF_03168159) - 1) AS ?thisPositionOn33) .
BIND(?this AS ?pfs2t172) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfsb30) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfse31) .
FILTER (REGEX('C[ARNDCQEGHILKMFPSTWYVBZJUOX]*C', SUBSTR(?thisSequenceValue, ?thisPositionOn32, (?thisPositionOn33 - ?thisPositionOn32)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03168a29')) AS ?annotation29) .
BIND(?this AS ?pfs28) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch177 faldo:location ?templateMotifSequenceMatchRegionP07170178 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP07170180 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP07170MF_03168173 .
?templateMotifSequenceMatchRegionP07170178 faldo:begin ?templateMotifSequenceMatchBeginP07170179 .
?templateMotifSequenceMatchBeginP07170179 faldo:position ?templateMotifSequenceMatchBeginPositionP07170174 ;
faldo:reference isoform:P07170-1 .
?templateMotifSequenceProfileAlignmentOperationP07170180 edam:has_input signature:MF_03168 ;
rdf:type edam:operation_0300 .
?targetMotifMatch181 faldo:location ?targetMotifMatchRegionMatch182 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03168184 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP07170MF_03168175 .
?targetMotifMatchRegionMatch182 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03168183 .
?targetMotifMatchRegionMatchBeginMF_03168183 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03168176 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03168184 edam:has_input signature:MF_03168 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07170MF_03168173, 1, (STRLEN(?templateMotifCigarP07170MF_03168173) - STRLEN(REPLACE(?templateMotifCigarP07170MF_03168173, CONCAT('^(?:-*[^-]){', STR(((36 - ?templateMotifSequenceMatchBeginPositionP07170174) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1185) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07170MF_03168175, 1, (STRLEN(?targetMotifMatchCigarP07170MF_03168175) - STRLEN(REPLACE(?targetMotifMatchCigarP07170MF_03168175, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1185), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07170MF_03168175, 1, (STRLEN(?targetMotifMatchCigarP07170MF_03168175) - STRLEN(REPLACE(?targetMotifMatchCigarP07170MF_03168175, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1185), '}'), '')))), '[^-]', ''))) AS ?step2186) .
BIND(((?step2186 + ?targetMotifMatchRegionMatchBeginPositionMF_03168176) - 1) AS ?thisPositionOn38) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07170MF_03168173, 1, (STRLEN(?templateMotifCigarP07170MF_03168173) - STRLEN(REPLACE(?templateMotifCigarP07170MF_03168173, CONCAT('^(?:-*[^-]){', STR(((65 - ?templateMotifSequenceMatchBeginPositionP07170174) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1187) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07170MF_03168175, 1, (STRLEN(?targetMotifMatchCigarP07170MF_03168175) - STRLEN(REPLACE(?targetMotifMatchCigarP07170MF_03168175, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1187), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07170MF_03168175, 1, (STRLEN(?targetMotifMatchCigarP07170MF_03168175) - STRLEN(REPLACE(?targetMotifMatchCigarP07170MF_03168175, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1187), '}'), '')))), '[^-]', ''))) AS ?step2188) .
BIND(((?step2188 + ?targetMotifMatchRegionMatchBeginPositionMF_03168176) - 1) AS ?thisPositionOn39) .
BIND(?this AS ?pfs3t189) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfsb36) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfse37) .
FILTER ((BOUND(?thisPositionOn38) && BOUND(?thisPositionOn39))) .
BIND(URI(CONCAT(STR(?this), '#MF_03168a35')) AS ?annotation35) .
BIND(?this AS ?pfs34) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch194 faldo:location ?templateMotifSequenceMatchRegionP07170195 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP07170197 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP07170MF_03168190 .
?templateMotifSequenceMatchRegionP07170195 faldo:begin ?templateMotifSequenceMatchBeginP07170196 .
?templateMotifSequenceMatchBeginP07170196 faldo:position ?templateMotifSequenceMatchBeginPositionP07170191 ;
faldo:reference isoform:P07170-1 .
?templateMotifSequenceProfileAlignmentOperationP07170197 edam:has_input signature:MF_03168 ;
rdf:type edam:operation_0300 .
?targetMotifMatch198 faldo:location ?targetMotifMatchRegionMatch199 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03168201 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP07170MF_03168192 .
?targetMotifMatchRegionMatch199 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03168200 .
?targetMotifMatchRegionMatchBeginMF_03168200 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03168193 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03168201 edam:has_input signature:MF_03168 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07170MF_03168190, 1, (STRLEN(?templateMotifCigarP07170MF_03168190) - STRLEN(REPLACE(?templateMotifCigarP07170MF_03168190, CONCAT('^(?:-*[^-]){', STR(((133 - ?templateMotifSequenceMatchBeginPositionP07170191) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1202) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07170MF_03168192, 1, (STRLEN(?targetMotifMatchCigarP07170MF_03168192) - STRLEN(REPLACE(?targetMotifMatchCigarP07170MF_03168192, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1202), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07170MF_03168192, 1, (STRLEN(?targetMotifMatchCigarP07170MF_03168192) - STRLEN(REPLACE(?targetMotifMatchCigarP07170MF_03168192, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1202), '}'), '')))), '[^-]', ''))) AS ?step2203) .
BIND(((?step2203 + ?targetMotifMatchRegionMatchBeginPositionMF_03168193) - 1) AS ?thisPositionOn44) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07170MF_03168190, 1, (STRLEN(?templateMotifCigarP07170MF_03168190) - STRLEN(REPLACE(?templateMotifCigarP07170MF_03168190, CONCAT('^(?:-*[^-]){', STR(((170 - ?templateMotifSequenceMatchBeginPositionP07170191) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1204) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07170MF_03168192, 1, (STRLEN(?targetMotifMatchCigarP07170MF_03168192) - STRLEN(REPLACE(?targetMotifMatchCigarP07170MF_03168192, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1204), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07170MF_03168192, 1, (STRLEN(?targetMotifMatchCigarP07170MF_03168192) - STRLEN(REPLACE(?targetMotifMatchCigarP07170MF_03168192, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1204), '}'), '')))), '[^-]', ''))) AS ?step2205) .
BIND(((?step2205 + ?targetMotifMatchRegionMatchBeginPositionMF_03168193) - 1) AS ?thisPositionOn45) .
BIND(?this AS ?pfs3t206) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfsb42) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfse43) .
FILTER ((BOUND(?thisPositionOn44) && BOUND(?thisPositionOn45))) .
BIND(URI(CONCAT(STR(?this), '#MF_03168a41')) AS ?annotation41) .
BIND(?this AS ?pfs40) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch211 faldo:location ?templateMotifSequenceMatchRegionP07170212 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP07170214 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP07170MF_03168207 .
?templateMotifSequenceMatchRegionP07170212 faldo:begin ?templateMotifSequenceMatchBeginP07170213 .
?templateMotifSequenceMatchBeginP07170213 faldo:position ?templateMotifSequenceMatchBeginPositionP07170208 ;
faldo:reference isoform:P07170-1 .
?templateMotifSequenceProfileAlignmentOperationP07170214 edam:has_input signature:MF_03168 ;
rdf:type edam:operation_0300 .
?targetMotifMatch215 faldo:location ?targetMotifMatchRegionMatch216 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03168218 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP07170MF_03168209 .
?targetMotifMatchRegionMatch216 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03168217 .
?targetMotifMatchRegionMatchBeginMF_03168217 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03168210 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03168218 edam:has_input signature:MF_03168 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07170MF_03168207, 1, (STRLEN(?templateMotifCigarP07170MF_03168207) - STRLEN(REPLACE(?templateMotifCigarP07170MF_03168207, CONCAT('^(?:-*[^-]){', STR(((206 - ?templateMotifSequenceMatchBeginPositionP07170208) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1219) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07170MF_03168209, 1, (STRLEN(?targetMotifMatchCigarP07170MF_03168209) - STRLEN(REPLACE(?targetMotifMatchCigarP07170MF_03168209, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1219), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07170MF_03168209, 1, (STRLEN(?targetMotifMatchCigarP07170MF_03168209) - STRLEN(REPLACE(?targetMotifMatchCigarP07170MF_03168209, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1219), '}'), '')))), '[^-]', ''))) AS ?step2220) .
BIND(((?step2220 + ?targetMotifMatchRegionMatchBeginPositionMF_03168210) - 1) AS ?thisPositionOn51) .
BIND(?thisPositionOn51 AS ?thisPositionOn52) .
BIND(?this AS ?pfs3t221) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfsb48) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfse49) .
FILTER (BOUND(?thisPositionOn51)) .
BIND(URI(CONCAT(STR(?this), '#MF_03168a47')) AS ?annotation47) .
BIND(?this AS ?pfs46) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch226 faldo:location ?templateMotifSequenceMatchRegionP07170227 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP07170229 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP07170MF_03168222 .
?templateMotifSequenceMatchRegionP07170227 faldo:begin ?templateMotifSequenceMatchBeginP07170228 .
?templateMotifSequenceMatchBeginP07170228 faldo:position ?templateMotifSequenceMatchBeginPositionP07170223 ;
faldo:reference isoform:P07170-1 .
?templateMotifSequenceProfileAlignmentOperationP07170229 edam:has_input signature:MF_03168 ;
rdf:type edam:operation_0300 .
?targetMotifMatch230 faldo:location ?targetMotifMatchRegionMatch231 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03168233 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP07170MF_03168224 .
?targetMotifMatchRegionMatch231 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03168232 .
?targetMotifMatchRegionMatchBeginMF_03168232 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03168225 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03168233 edam:has_input signature:MF_03168 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07170MF_03168222, 1, (STRLEN(?templateMotifCigarP07170MF_03168222) - STRLEN(REPLACE(?templateMotifCigarP07170MF_03168222, CONCAT('^(?:-*[^-]){', STR(((16 - ?templateMotifSequenceMatchBeginPositionP07170223) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1234) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07170MF_03168224, 1, (STRLEN(?targetMotifMatchCigarP07170MF_03168224) - STRLEN(REPLACE(?targetMotifMatchCigarP07170MF_03168224, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1234), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07170MF_03168224, 1, (STRLEN(?targetMotifMatchCigarP07170MF_03168224) - STRLEN(REPLACE(?targetMotifMatchCigarP07170MF_03168224, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1234), '}'), '')))), '[^-]', ''))) AS ?step2235) .
BIND(((?step2235 + ?targetMotifMatchRegionMatchBeginPositionMF_03168225) - 1) AS ?thisPositionOn58) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07170MF_03168222, 1, (STRLEN(?templateMotifCigarP07170MF_03168222) - STRLEN(REPLACE(?templateMotifCigarP07170MF_03168222, CONCAT('^(?:-*[^-]){', STR(((21 - ?templateMotifSequenceMatchBeginPositionP07170223) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1236) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07170MF_03168224, 1, (STRLEN(?targetMotifMatchCigarP07170MF_03168224) - STRLEN(REPLACE(?targetMotifMatchCigarP07170MF_03168224, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1236), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07170MF_03168224, 1, (STRLEN(?targetMotifMatchCigarP07170MF_03168224) - STRLEN(REPLACE(?targetMotifMatchCigarP07170MF_03168224, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1236), '}'), '')))), '[^-]', ''))) AS ?step2237) .
BIND(((?step2237 + ?targetMotifMatchRegionMatchBeginPositionMF_03168225) - 1) AS ?thisPositionOn59) .
BIND(?this AS ?pfs3t238) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfsb55) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfse56) .
FILTER (REGEX('G[AS]GKGT', SUBSTR(?thisSequenceValue, ?thisPositionOn58, (?thisPositionOn59 - ?thisPositionOn58)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03168a54')) AS ?annotation54) .
BIND(?this AS ?pfs53) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch243 faldo:location ?templateMotifSequenceMatchRegionP07170244 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP07170246 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP07170MF_03168239 .
?templateMotifSequenceMatchRegionP07170244 faldo:begin ?templateMotifSequenceMatchBeginP07170245 .
?templateMotifSequenceMatchBeginP07170245 faldo:position ?templateMotifSequenceMatchBeginPositionP07170240 ;
faldo:reference isoform:P07170-1 .
?templateMotifSequenceProfileAlignmentOperationP07170246 edam:has_input signature:MF_03168 ;
rdf:type edam:operation_0300 .
?targetMotifMatch247 faldo:location ?targetMotifMatchRegionMatch248 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03168250 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP07170MF_03168241 .
?targetMotifMatchRegionMatch248 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03168249 .
?targetMotifMatchRegionMatchBeginMF_03168249 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03168242 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03168250 edam:has_input signature:MF_03168 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07170MF_03168239, 1, (STRLEN(?templateMotifCigarP07170MF_03168239) - STRLEN(REPLACE(?templateMotifCigarP07170MF_03168239, CONCAT('^(?:-*[^-]){', STR(((63 - ?templateMotifSequenceMatchBeginPositionP07170240) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1251) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07170MF_03168241, 1, (STRLEN(?targetMotifMatchCigarP07170MF_03168241) - STRLEN(REPLACE(?targetMotifMatchCigarP07170MF_03168241, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1251), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07170MF_03168241, 1, (STRLEN(?targetMotifMatchCigarP07170MF_03168241) - STRLEN(REPLACE(?targetMotifMatchCigarP07170MF_03168241, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1251), '}'), '')))), '[^-]', ''))) AS ?step2252) .
BIND(((?step2252 + ?targetMotifMatchRegionMatchBeginPositionMF_03168242) - 1) AS ?thisPositionOn65) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07170MF_03168239, 1, (STRLEN(?templateMotifCigarP07170MF_03168239) - STRLEN(REPLACE(?templateMotifCigarP07170MF_03168239, CONCAT('^(?:-*[^-]){', STR(((65 - ?templateMotifSequenceMatchBeginPositionP07170240) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1253) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07170MF_03168241, 1, (STRLEN(?targetMotifMatchCigarP07170MF_03168241) - STRLEN(REPLACE(?targetMotifMatchCigarP07170MF_03168241, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1253), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07170MF_03168241, 1, (STRLEN(?targetMotifMatchCigarP07170MF_03168241) - STRLEN(REPLACE(?targetMotifMatchCigarP07170MF_03168241, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1253), '}'), '')))), '[^-]', ''))) AS ?step2254) .
BIND(((?step2254 + ?targetMotifMatchRegionMatchBeginPositionMF_03168242) - 1) AS ?thisPositionOn66) .
BIND(?this AS ?pfs3t255) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn65))) AS ?pfsb62) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfse63) .
FILTER (REGEX('[ARNDCQEGHILKMFPSTWYVBZJUOX]LV', SUBSTR(?thisSequenceValue, ?thisPositionOn65, (?thisPositionOn66 - ?thisPositionOn65)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03168a61')) AS ?annotation61) .
BIND(?this AS ?pfs60) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch260 faldo:location ?templateMotifSequenceMatchRegionP07170261 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP07170263 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP07170MF_03168256 .
?templateMotifSequenceMatchRegionP07170261 faldo:begin ?templateMotifSequenceMatchBeginP07170262 .
?templateMotifSequenceMatchBeginP07170262 faldo:position ?templateMotifSequenceMatchBeginPositionP07170257 ;
faldo:reference isoform:P07170-1 .
?templateMotifSequenceProfileAlignmentOperationP07170263 edam:has_input signature:MF_03168 ;
rdf:type edam:operation_0300 .
?targetMotifMatch264 faldo:location ?targetMotifMatchRegionMatch265 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03168267 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP07170MF_03168258 .
?targetMotifMatchRegionMatch265 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03168266 .
?targetMotifMatchRegionMatchBeginMF_03168266 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03168259 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03168267 edam:has_input signature:MF_03168 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07170MF_03168256, 1, (STRLEN(?templateMotifCigarP07170MF_03168256) - STRLEN(REPLACE(?templateMotifCigarP07170MF_03168256, CONCAT('^(?:-*[^-]){', STR(((92 - ?templateMotifSequenceMatchBeginPositionP07170257) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1268) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07170MF_03168258, 1, (STRLEN(?targetMotifMatchCigarP07170MF_03168258) - STRLEN(REPLACE(?targetMotifMatchCigarP07170MF_03168258, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1268), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07170MF_03168258, 1, (STRLEN(?targetMotifMatchCigarP07170MF_03168258) - STRLEN(REPLACE(?targetMotifMatchCigarP07170MF_03168258, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1268), '}'), '')))), '[^-]', ''))) AS ?step2269) .
BIND(((?step2269 + ?targetMotifMatchRegionMatchBeginPositionMF_03168259) - 1) AS ?thisPositionOn72) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07170MF_03168256, 1, (STRLEN(?templateMotifCigarP07170MF_03168256) - STRLEN(REPLACE(?templateMotifCigarP07170MF_03168256, CONCAT('^(?:-*[^-]){', STR(((95 - ?templateMotifSequenceMatchBeginPositionP07170257) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1270) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07170MF_03168258, 1, (STRLEN(?targetMotifMatchCigarP07170MF_03168258) - STRLEN(REPLACE(?targetMotifMatchCigarP07170MF_03168258, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1270), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07170MF_03168258, 1, (STRLEN(?targetMotifMatchCigarP07170MF_03168258) - STRLEN(REPLACE(?targetMotifMatchCigarP07170MF_03168258, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1270), '}'), '')))), '[^-]', ''))) AS ?step2271) .
BIND(((?step2271 + ?targetMotifMatchRegionMatchBeginPositionMF_03168259) - 1) AS ?thisPositionOn73) .
BIND(?this AS ?pfs3t272) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn72))) AS ?pfsb69) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfse70) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn72, (?thisPositionOn73 - ?thisPositionOn72)) = 'GFPR')) .
BIND(URI(CONCAT(STR(?this), '#MF_03168a68')) AS ?annotation68) .
BIND(?this AS ?pfs67) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch277 faldo:location ?templateMotifSequenceMatchRegionP07170278 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP07170280 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP07170MF_03168273 .
?templateMotifSequenceMatchRegionP07170278 faldo:begin ?templateMotifSequenceMatchBeginP07170279 .
?templateMotifSequenceMatchBeginP07170279 faldo:position ?templateMotifSequenceMatchBeginPositionP07170274 ;
faldo:reference isoform:P07170-1 .
?templateMotifSequenceProfileAlignmentOperationP07170280 edam:has_input signature:MF_03168 ;
rdf:type edam:operation_0300 .
?targetMotifMatch281 faldo:location ?targetMotifMatchRegionMatch282 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03168284 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP07170MF_03168275 .
?targetMotifMatchRegionMatch282 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03168283 .
?targetMotifMatchRegionMatchBeginMF_03168283 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03168276 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03168284 edam:has_input signature:MF_03168 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07170MF_03168273, 1, (STRLEN(?templateMotifCigarP07170MF_03168273) - STRLEN(REPLACE(?templateMotifCigarP07170MF_03168273, CONCAT('^(?:-*[^-]){', STR(((143 - ?templateMotifSequenceMatchBeginPositionP07170274) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1285) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07170MF_03168275, 1, (STRLEN(?targetMotifMatchCigarP07170MF_03168275) - STRLEN(REPLACE(?targetMotifMatchCigarP07170MF_03168275, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1285), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07170MF_03168275, 1, (STRLEN(?targetMotifMatchCigarP07170MF_03168275) - STRLEN(REPLACE(?targetMotifMatchCigarP07170MF_03168275, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1285), '}'), '')))), '[^-]', ''))) AS ?step2286) .
BIND(((?step2286 + ?targetMotifMatchRegionMatchBeginPositionMF_03168276) - 1) AS ?thisPositionOn79) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07170MF_03168273, 1, (STRLEN(?templateMotifCigarP07170MF_03168273) - STRLEN(REPLACE(?templateMotifCigarP07170MF_03168273, CONCAT('^(?:-*[^-]){', STR(((144 - ?templateMotifSequenceMatchBeginPositionP07170274) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1287) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07170MF_03168275, 1, (STRLEN(?targetMotifMatchCigarP07170MF_03168275) - STRLEN(REPLACE(?targetMotifMatchCigarP07170MF_03168275, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1287), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07170MF_03168275, 1, (STRLEN(?targetMotifMatchCigarP07170MF_03168275) - STRLEN(REPLACE(?targetMotifMatchCigarP07170MF_03168275, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1287), '}'), '')))), '[^-]', ''))) AS ?step2288) .
BIND(((?step2288 + ?targetMotifMatchRegionMatchBeginPositionMF_03168276) - 1) AS ?thisPositionOn80) .
BIND(?this AS ?pfs3t289) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn79))) AS ?pfsb76) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn80))) AS ?pfse77) .
FILTER (REGEX('[ST]Y', SUBSTR(?thisSequenceValue, ?thisPositionOn79, (?thisPositionOn80 - ?thisPositionOn79)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03168a75')) AS ?annotation75) .
BIND(?this AS ?pfs74) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch294 faldo:location ?templateMotifSequenceMatchRegionP07170295 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP07170297 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP07170MF_03168290 .
?templateMotifSequenceMatchRegionP07170295 faldo:begin ?templateMotifSequenceMatchBeginP07170296 .
?templateMotifSequenceMatchBeginP07170296 faldo:position ?templateMotifSequenceMatchBeginPositionP07170291 ;
faldo:reference isoform:P07170-1 .
?templateMotifSequenceProfileAlignmentOperationP07170297 edam:has_input signature:MF_03168 ;
rdf:type edam:operation_0300 .
?targetMotifMatch298 faldo:location ?targetMotifMatchRegionMatch299 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03168301 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP07170MF_03168292 .
?targetMotifMatchRegionMatch299 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03168300 .
?targetMotifMatchRegionMatchBeginMF_03168300 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03168293 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03168301 edam:has_input signature:MF_03168 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07170MF_03168290, 1, (STRLEN(?templateMotifCigarP07170MF_03168290) - STRLEN(REPLACE(?templateMotifCigarP07170MF_03168290, CONCAT('^(?:-*[^-]){', STR(((37 - ?templateMotifSequenceMatchBeginPositionP07170291) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1302) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07170MF_03168292, 1, (STRLEN(?targetMotifMatchCigarP07170MF_03168292) - STRLEN(REPLACE(?targetMotifMatchCigarP07170MF_03168292, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1302), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07170MF_03168292, 1, (STRLEN(?targetMotifMatchCigarP07170MF_03168292) - STRLEN(REPLACE(?targetMotifMatchCigarP07170MF_03168292, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1302), '}'), '')))), '[^-]', ''))) AS ?step2303) .
BIND(((?step2303 + ?targetMotifMatchRegionMatchBeginPositionMF_03168293) - 1) AS ?thisPositionOn86) .
BIND(?thisPositionOn86 AS ?thisPositionOn87) .
BIND(?this AS ?pfs3t304) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn86))) AS ?pfsb83) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn87))) AS ?pfse84) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn86, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_03168a82')) AS ?annotation82) .
BIND(?this AS ?pfs81) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch309 faldo:location ?templateMotifSequenceMatchRegionP07170310 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP07170312 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP07170MF_03168305 .
?templateMotifSequenceMatchRegionP07170310 faldo:begin ?templateMotifSequenceMatchBeginP07170311 .
?templateMotifSequenceMatchBeginP07170311 faldo:position ?templateMotifSequenceMatchBeginPositionP07170306 ;
faldo:reference isoform:P07170-1 .
?templateMotifSequenceProfileAlignmentOperationP07170312 edam:has_input signature:MF_03168 ;
rdf:type edam:operation_0300 .
?targetMotifMatch313 faldo:location ?targetMotifMatchRegionMatch314 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03168316 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP07170MF_03168307 .
?targetMotifMatchRegionMatch314 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03168315 .
?targetMotifMatchRegionMatchBeginMF_03168315 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03168308 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03168316 edam:has_input signature:MF_03168 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07170MF_03168305, 1, (STRLEN(?templateMotifCigarP07170MF_03168305) - STRLEN(REPLACE(?templateMotifCigarP07170MF_03168305, CONCAT('^(?:-*[^-]){', STR(((42 - ?templateMotifSequenceMatchBeginPositionP07170306) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1317) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07170MF_03168307, 1, (STRLEN(?targetMotifMatchCigarP07170MF_03168307) - STRLEN(REPLACE(?targetMotifMatchCigarP07170MF_03168307, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1317), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07170MF_03168307, 1, (STRLEN(?targetMotifMatchCigarP07170MF_03168307) - STRLEN(REPLACE(?targetMotifMatchCigarP07170MF_03168307, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1317), '}'), '')))), '[^-]', ''))) AS ?step2318) .
BIND(((?step2318 + ?targetMotifMatchRegionMatchBeginPositionMF_03168308) - 1) AS ?thisPositionOn93) .
BIND(?thisPositionOn93 AS ?thisPositionOn94) .
BIND(?this AS ?pfs3t319) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn93))) AS ?pfsb90) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn94))) AS ?pfse91) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn93, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_03168a89')) AS ?annotation89) .
BIND(?this AS ?pfs88) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch324 faldo:location ?templateMotifSequenceMatchRegionP07170325 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP07170327 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP07170MF_03168320 .
?templateMotifSequenceMatchRegionP07170325 faldo:begin ?templateMotifSequenceMatchBeginP07170326 .
?templateMotifSequenceMatchBeginP07170326 faldo:position ?templateMotifSequenceMatchBeginPositionP07170321 ;
faldo:reference isoform:P07170-1 .
?templateMotifSequenceProfileAlignmentOperationP07170327 edam:has_input signature:MF_03168 ;
rdf:type edam:operation_0300 .
?targetMotifMatch328 faldo:location ?targetMotifMatchRegionMatch329 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03168331 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP07170MF_03168322 .
?targetMotifMatchRegionMatch329 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03168330 .
?targetMotifMatchRegionMatchBeginMF_03168330 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03168323 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03168331 edam:has_input signature:MF_03168 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07170MF_03168320, 1, (STRLEN(?templateMotifCigarP07170MF_03168320) - STRLEN(REPLACE(?templateMotifCigarP07170MF_03168320, CONCAT('^(?:-*[^-]){', STR(((99 - ?templateMotifSequenceMatchBeginPositionP07170321) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1332) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07170MF_03168322, 1, (STRLEN(?targetMotifMatchCigarP07170MF_03168322) - STRLEN(REPLACE(?targetMotifMatchCigarP07170MF_03168322, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1332), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07170MF_03168322, 1, (STRLEN(?targetMotifMatchCigarP07170MF_03168322) - STRLEN(REPLACE(?targetMotifMatchCigarP07170MF_03168322, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1332), '}'), '')))), '[^-]', ''))) AS ?step2333) .
BIND(((?step2333 + ?targetMotifMatchRegionMatchBeginPositionMF_03168323) - 1) AS ?thisPositionOn100) .
BIND(?thisPositionOn100 AS ?thisPositionOn101) .
BIND(?this AS ?pfs3t334) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn100))) AS ?pfsb97) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn101))) AS ?pfse98) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn100, 1) = 'Q')) .
BIND(URI(CONCAT(STR(?this), '#MF_03168a96')) AS ?annotation96) .
BIND(?this AS ?pfs95) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch339 faldo:location ?templateMotifSequenceMatchRegionP07170340 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP07170342 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP07170MF_03168335 .
?templateMotifSequenceMatchRegionP07170340 faldo:begin ?templateMotifSequenceMatchBeginP07170341 .
?templateMotifSequenceMatchBeginP07170341 faldo:position ?templateMotifSequenceMatchBeginPositionP07170336 ;
faldo:reference isoform:P07170-1 .
?templateMotifSequenceProfileAlignmentOperationP07170342 edam:has_input signature:MF_03168 ;
rdf:type edam:operation_0300 .
?targetMotifMatch343 faldo:location ?targetMotifMatchRegionMatch344 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03168346 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP07170MF_03168337 .
?targetMotifMatchRegionMatch344 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03168345 .
?targetMotifMatchRegionMatchBeginMF_03168345 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03168338 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03168346 edam:has_input signature:MF_03168 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07170MF_03168335, 1, (STRLEN(?templateMotifCigarP07170MF_03168335) - STRLEN(REPLACE(?templateMotifCigarP07170MF_03168335, CONCAT('^(?:-*[^-]){', STR(((134 - ?templateMotifSequenceMatchBeginPositionP07170336) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1347) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07170MF_03168337, 1, (STRLEN(?targetMotifMatchCigarP07170MF_03168337) - STRLEN(REPLACE(?targetMotifMatchCigarP07170MF_03168337, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1347), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07170MF_03168337, 1, (STRLEN(?targetMotifMatchCigarP07170MF_03168337) - STRLEN(REPLACE(?targetMotifMatchCigarP07170MF_03168337, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1347), '}'), '')))), '[^-]', ''))) AS ?step2348) .
BIND(((?step2348 + ?targetMotifMatchRegionMatchBeginPositionMF_03168338) - 1) AS ?thisPositionOn107) .
BIND(?thisPositionOn107 AS ?thisPositionOn108) .
BIND(?this AS ?pfs3t349) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn107))) AS ?pfsb104) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn108))) AS ?pfse105) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn107, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_03168a103')) AS ?annotation103) .
BIND(?this AS ?pfs102) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch354 faldo:location ?templateMotifSequenceMatchRegionP07170355 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP07170357 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP07170MF_03168350 .
?templateMotifSequenceMatchRegionP07170355 faldo:begin ?templateMotifSequenceMatchBeginP07170356 .
?templateMotifSequenceMatchBeginP07170356 faldo:position ?templateMotifSequenceMatchBeginPositionP07170351 ;
faldo:reference isoform:P07170-1 .
?templateMotifSequenceProfileAlignmentOperationP07170357 edam:has_input signature:MF_03168 ;
rdf:type edam:operation_0300 .
?targetMotifMatch358 faldo:location ?targetMotifMatchRegionMatch359 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03168361 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP07170MF_03168352 .
?targetMotifMatchRegionMatch359 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03168360 .
?targetMotifMatchRegionMatchBeginMF_03168360 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03168353 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03168361 edam:has_input signature:MF_03168 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07170MF_03168350, 1, (STRLEN(?templateMotifCigarP07170MF_03168350) - STRLEN(REPLACE(?templateMotifCigarP07170MF_03168350, CONCAT('^(?:-*[^-]){', STR(((167 - ?templateMotifSequenceMatchBeginPositionP07170351) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1362) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07170MF_03168352, 1, (STRLEN(?targetMotifMatchCigarP07170MF_03168352) - STRLEN(REPLACE(?targetMotifMatchCigarP07170MF_03168352, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1362), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07170MF_03168352, 1, (STRLEN(?targetMotifMatchCigarP07170MF_03168352) - STRLEN(REPLACE(?targetMotifMatchCigarP07170MF_03168352, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1362), '}'), '')))), '[^-]', ''))) AS ?step2363) .
BIND(((?step2363 + ?targetMotifMatchRegionMatchBeginPositionMF_03168353) - 1) AS ?thisPositionOn114) .
BIND(?thisPositionOn114 AS ?thisPositionOn115) .
BIND(?this AS ?pfs3t364) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn114))) AS ?pfsb111) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn115))) AS ?pfse112) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn114, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_03168a110')) AS ?annotation110) .
BIND(?this AS ?pfs109) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch369 faldo:location ?templateMotifSequenceMatchRegionP07170370 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP07170372 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP07170MF_03168365 .
?templateMotifSequenceMatchRegionP07170370 faldo:begin ?templateMotifSequenceMatchBeginP07170371 .
?templateMotifSequenceMatchBeginP07170371 faldo:position ?templateMotifSequenceMatchBeginPositionP07170366 ;
faldo:reference isoform:P07170-1 .
?templateMotifSequenceProfileAlignmentOperationP07170372 edam:has_input signature:MF_03168 ;
rdf:type edam:operation_0300 .
?targetMotifMatch373 faldo:location ?targetMotifMatchRegionMatch374 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03168376 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP07170MF_03168367 .
?targetMotifMatchRegionMatch374 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03168375 .
?targetMotifMatchRegionMatchBeginMF_03168375 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03168368 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03168376 edam:has_input signature:MF_03168 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07170MF_03168365, 1, (STRLEN(?templateMotifCigarP07170MF_03168365) - STRLEN(REPLACE(?templateMotifCigarP07170MF_03168365, CONCAT('^(?:-*[^-]){', STR(((178 - ?templateMotifSequenceMatchBeginPositionP07170366) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1377) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07170MF_03168367, 1, (STRLEN(?targetMotifMatchCigarP07170MF_03168367) - STRLEN(REPLACE(?targetMotifMatchCigarP07170MF_03168367, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1377), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07170MF_03168367, 1, (STRLEN(?targetMotifMatchCigarP07170MF_03168367) - STRLEN(REPLACE(?targetMotifMatchCigarP07170MF_03168367, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1377), '}'), '')))), '[^-]', ''))) AS ?step2378) .
BIND(((?step2378 + ?targetMotifMatchRegionMatchBeginPositionMF_03168368) - 1) AS ?thisPositionOn121) .
BIND(?thisPositionOn121 AS ?thisPositionOn122) .
BIND(?this AS ?pfs3t379) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn121))) AS ?pfsb118) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn122))) AS ?pfse119) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn121, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_03168a117')) AS ?annotation117) .
BIND(?this AS ?pfs116) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch384 faldo:location ?templateMotifSequenceMatchRegionP07170385 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP07170387 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP07170MF_03168380 .
?templateMotifSequenceMatchRegionP07170385 faldo:begin ?templateMotifSequenceMatchBeginP07170386 .
?templateMotifSequenceMatchBeginP07170386 faldo:position ?templateMotifSequenceMatchBeginPositionP07170381 ;
faldo:reference isoform:P07170-1 .
?templateMotifSequenceProfileAlignmentOperationP07170387 edam:has_input signature:MF_03168 ;
rdf:type edam:operation_0300 .
?targetMotifMatch388 faldo:location ?targetMotifMatchRegionMatch389 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03168391 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP07170MF_03168382 .
?targetMotifMatchRegionMatch389 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03168390 .
?targetMotifMatchRegionMatchBeginMF_03168390 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03168383 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03168391 edam:has_input signature:MF_03168 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:4930 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07170MF_03168380, 1, (STRLEN(?templateMotifCigarP07170MF_03168380) - STRLEN(REPLACE(?templateMotifCigarP07170MF_03168380, CONCAT('^(?:-*[^-]){', STR(((1 - ?templateMotifSequenceMatchBeginPositionP07170381) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1392) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07170MF_03168382, 1, (STRLEN(?targetMotifMatchCigarP07170MF_03168382) - STRLEN(REPLACE(?targetMotifMatchCigarP07170MF_03168382, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1392), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07170MF_03168382, 1, (STRLEN(?targetMotifMatchCigarP07170MF_03168382) - STRLEN(REPLACE(?targetMotifMatchCigarP07170MF_03168382, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1392), '}'), '')))), '[^-]', ''))) AS ?step2393) .
BIND(((?step2393 + ?targetMotifMatchRegionMatchBeginPositionMF_03168383) - 1) AS ?thisPositionOn127) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07170MF_03168380, 1, (STRLEN(?templateMotifCigarP07170MF_03168380) - STRLEN(REPLACE(?templateMotifCigarP07170MF_03168380, CONCAT('^(?:-*[^-]){', STR(((2 - ?templateMotifSequenceMatchBeginPositionP07170381) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1394) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07170MF_03168382, 1, (STRLEN(?targetMotifMatchCigarP07170MF_03168382) - STRLEN(REPLACE(?targetMotifMatchCigarP07170MF_03168382, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1394), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07170MF_03168382, 1, (STRLEN(?targetMotifMatchCigarP07170MF_03168382) - STRLEN(REPLACE(?targetMotifMatchCigarP07170MF_03168382, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1394), '}'), '')))), '[^-]', ''))) AS ?step2395) .
BIND(((?step2395 + ?targetMotifMatchRegionMatchBeginPositionMF_03168383) - 1) AS ?thisPositionOn128) .
BIND(?this AS ?pfs4t396) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn127))) AS ?pfsb125) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn128))) AS ?pfse126) .
FILTER ((BOUND(?thisPositionOn127) && BOUND(?thisPositionOn128))) .
BIND(URI(CONCAT(STR(?this), '#MF_03168a124')) AS ?annotation124) .
BIND(?this AS ?pfs123) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch401 faldo:location ?templateMotifSequenceMatchRegionP07170402 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP07170404 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP07170MF_03168397 .
?templateMotifSequenceMatchRegionP07170402 faldo:begin ?templateMotifSequenceMatchBeginP07170403 .
?templateMotifSequenceMatchBeginP07170403 faldo:position ?templateMotifSequenceMatchBeginPositionP07170398 ;
faldo:reference isoform:P07170-1 .
?templateMotifSequenceProfileAlignmentOperationP07170404 edam:has_input signature:MF_03168 ;
rdf:type edam:operation_0300 .
?targetMotifMatch405 faldo:location ?targetMotifMatchRegionMatch406 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03168408 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP07170MF_03168399 .
?targetMotifMatchRegionMatch406 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03168407 .
?targetMotifMatchRegionMatchBeginMF_03168407 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03168400 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03168408 edam:has_input signature:MF_03168 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:4930 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07170MF_03168397, 1, (STRLEN(?templateMotifCigarP07170MF_03168397) - STRLEN(REPLACE(?templateMotifCigarP07170MF_03168397, CONCAT('^(?:-*[^-]){', STR(((3 - ?templateMotifSequenceMatchBeginPositionP07170398) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1409) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07170MF_03168399, 1, (STRLEN(?targetMotifMatchCigarP07170MF_03168399) - STRLEN(REPLACE(?targetMotifMatchCigarP07170MF_03168399, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1409), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07170MF_03168399, 1, (STRLEN(?targetMotifMatchCigarP07170MF_03168399) - STRLEN(REPLACE(?targetMotifMatchCigarP07170MF_03168399, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1409), '}'), '')))), '[^-]', ''))) AS ?step2410) .
BIND(((?step2410 + ?targetMotifMatchRegionMatchBeginPositionMF_03168400) - 1) AS ?thisPositionOn133) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn134) .
BIND(?this AS ?pfs4t411) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn133))) AS ?pfsb131) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn134))) AS ?pfse132) .
FILTER ((BOUND(?thisPositionOn133) && BOUND(?thisPositionOn134))) .
BIND(URI(CONCAT(STR(?this), '#MF_03168a130')) AS ?annotation130) .
BIND(?this AS ?pfs129) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch416 faldo:location ?templateMotifSequenceMatchRegionP54819417 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP54819419 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP54819MF_03168412 .
?templateMotifSequenceMatchRegionP54819417 faldo:begin ?templateMotifSequenceMatchBeginP54819418 .
?templateMotifSequenceMatchBeginP54819418 faldo:position ?templateMotifSequenceMatchBeginPositionP54819413 ;
faldo:reference isoform:P54819-1 .
?templateMotifSequenceProfileAlignmentOperationP54819419 edam:has_input signature:MF_03168 ;
rdf:type edam:operation_0300 .
?targetMotifMatch420 faldo:location ?targetMotifMatchRegionMatch421 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03168423 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP54819MF_03168414 .
?targetMotifMatchRegionMatch421 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03168422 .
?targetMotifMatchRegionMatchBeginMF_03168422 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03168415 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03168423 edam:has_input signature:MF_03168 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP54819MF_03168412, 1, (STRLEN(?templateMotifCigarP54819MF_03168412) - STRLEN(REPLACE(?templateMotifCigarP54819MF_03168412, CONCAT('^(?:-*[^-]){', STR(((1 - ?templateMotifSequenceMatchBeginPositionP54819413) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1424) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP54819MF_03168414, 1, (STRLEN(?targetMotifMatchCigarP54819MF_03168414) - STRLEN(REPLACE(?targetMotifMatchCigarP54819MF_03168414, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1424), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP54819MF_03168414, 1, (STRLEN(?targetMotifMatchCigarP54819MF_03168414) - STRLEN(REPLACE(?targetMotifMatchCigarP54819MF_03168414, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1424), '}'), '')))), '[^-]', ''))) AS ?step2425) .
BIND(((?step2425 + ?targetMotifMatchRegionMatchBeginPositionMF_03168415) - 1) AS ?thisPositionOn139) .
BIND(?thisPositionOn139 AS ?thisPositionOn140) .
BIND(?this AS ?pfs5t426) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn139))) AS ?pfsb137) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn140))) AS ?pfse138) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn139, 1) = 'M')) .
BIND(URI(CONCAT(STR(?this), '#MF_03168a136')) AS ?annotation136) .
BIND(?this AS ?pfs135) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag427) .
}
BIND(IF(BOUND(?tagacetyl), ?caseWithTag427, ?UNBOUND_VARIABLE) AS ?case5) .
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag428) .
}
BIND(IF(BOUND(?tagdisulfid), ?caseWithTag428, ?UNBOUND_VARIABLE) AS ?case6) .
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:4751 .
BIND(?this AS ?case7) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:50557 .
BIND(?this AS ?case8) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:7742 .
BIND(?this AS ?case9) .
BIND(URI(CONCAT(STR(?this), '#MF_03168a10')) AS ?name10) .
BIND(URI(CONCAT(STR(?this), '#MF_03168a11')) AS ?name11) .
BIND(URI(CONCAT(STR(?this), '#MF_03168a12')) AS ?name12) .
BIND(URI(CONCAT(STR(?this), '#MF_03168a13')) AS ?name13) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:4930 .
BIND(?this AS ?case14) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:6237 .
BIND(?this AS ?case15) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:7742 .
})) .
BIND(?this AS ?case16) .
BIND(URI(CONCAT(STR(?this), '#MF_03168a17')) AS ?name17) .
BIND(URI(CONCAT(STR(?this), '#MF_03168a18')) AS ?name18) .
BIND(URI(CONCAT(STR(?this), '#MF_03168a19')) AS ?name19) .
BIND(URI(CONCAT(STR(?this), '#MF_03168a20')) AS ?name20) .
BIND(URI(CONCAT(STR(?this), '#MF_03168a21')) AS ?name21) .
}
}
"xsd:string |
