| http://purl.uniprot.org/unirules/MF_04075#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:930529 up:source unirule:MF_04075 .
_:930530 up:source unirule:MF_04075 .
_:930531 up:source unirule:MF_04075 .
_:930532 up:source unirule:MF_04075 .
_:930533 up:source unirule:MF_04075 .
_:930534 up:source unirule:MF_04075 .
_:930535 up:source unirule:MF_04075 .
_:930536 up:source unirule:MF_04075 .
_:930537 up:source unirule:MF_04075 .
_:930538 up:source unirule:MF_04075 .
_:930539 up:source unirule:MF_04075 .
_:930540 up:source unirule:MF_04075 .
_:930541 up:source unirule:MF_04075 .
_:930542 up:source unirule:MF_04075 .
_:930543 up:source unirule:MF_04075 .
_:930544 up:source unirule:MF_04075 .
_:930545 up:source unirule:MF_04075 .
_:930546 up:source unirule:MF_04075 .
_:930547 up:source unirule:MF_04075 .
_:930548 up:source unirule:MF_04075 .
_:930549 up:source unirule:MF_04075 .
_:930550 up:source unirule:MF_04075 .
_:930551 up:source unirule:MF_04075 .
_:930552 up:source unirule:MF_04075 .
_:930553 up:source unirule:MF_04075 .
_:930554 up:source unirule:MF_04075 .
_:930555 up:source unirule:MF_04075 .
_:930556 up:source unirule:MF_04075 .
_:930557 up:source unirule:MF_04075 .
_:930558 up:source unirule:MF_04075 .
_:930559 up:source unirule:MF_04075 .
_:930560 up:source unirule:MF_04075 .
_:930561 up:source unirule:MF_04075 .
_:930562 up:source unirule:MF_04075 .
_:930563 up:source unirule:MF_04075 .
_:930564 up:source unirule:MF_04075 .
_:930565 up:source unirule:MF_04075 .
_:930566 up:source unirule:MF_04075 .
_:930567 up:source unirule:MF_04075 .
_:930568 up:source unirule:MF_04075 .
_:930569 up:source unirule:MF_04075 .
_:930570 up:source unirule:MF_04075 .
_:930571 up:source unirule:MF_04075 .
_:930572 up:source unirule:MF_04075 .
_:930573 up:source unirule:MF_04075 .
_:930574 up:source unirule:MF_04075 .
_:930575 up:source unirule:MF_04075 .
_:930576 up:source unirule:MF_04075 .
_:930577 up:source unirule:MF_04075 .
_:930578 up:source unirule:MF_04075 .
?this up:alternativeName ?name1 ,
?name2 ,
?name3 ,
?name4 ,
?name5 ;
up:annotation ?annotation7 ,
?annotation8 ,
?annotation9 ,
?annotation11 ,
?annotation12 ,
?annotation13 ,
?annotation14 ;
up:classifiedWith GO:0016020 ,
GO:0019062 ,
GO:0039663 ,
GO:0055036 ,
keyword:1133 ,
keyword:1160 ,
keyword:1161 ,
keyword:1162 ,
keyword:1164 ,
keyword:1166 ,
keyword:1168 ,
keyword:1170 ,
keyword:325 ,
keyword:449 ,
keyword:472 ,
keyword:519 ,
keyword:7 ,
keyword:812 ,
keyword:945 ,
keyword:946 ;
up:recommendedName ?name0 .
?name0 up:fullName 'Large envelope protein' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'L glycoprotein' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'L-HBsAg' ;
up:shortName 'LHB' ;
rdf:type up:Structured_Name .
?name3 up:fullName 'Large S protein' ;
rdf:type up:Structured_Name .
?name4 up:fullName 'Large surface protein' ;
rdf:type up:Structured_Name .
?name5 up:fullName 'Major surface antigen' ;
rdf:type up:Structured_Name .
?gene6 skos:prefLabel 'S' .
?annotation7 a up:Function_Annotation ;
rdfs:comment "The large envelope protein exists in two topological conformations, one which is termed 'external' or Le-HBsAg and the other 'internal' or Li-HBsAg. In its external conformation the protein attaches the virus to cell receptors and thereby initiating infection. This interaction determines the species specificity and liver tropism. This attachment induces virion internalization predominantly through caveolin-mediated endocytosis. The large envelope protein also assures fusion between virion membrane and endosomal membrane. In its internal conformation the protein plays a role in virion morphogenesis and mediates the contact with the nucleocapsid like a matrix protein." .
?annotation8 a up:Function_Annotation ;
rdfs:comment 'The middle envelope protein plays an important role in the budding of the virion. It is involved in the induction of budding in a nucleocapsid independent way. In this process the majority of envelope proteins bud to form subviral lipoprotein particles of 22 nm of diameter that do not contain a nucleocapsid.' .
?annotation9 a up:Subcellular_Location_Annotation .
?annotation9li10 up:cellularComponent .
?annotation11 a up:Domain_Annotation ;
rdfs:comment 'The large envelope protein is synthesized with the pre-S region at the cytosolic side of the endoplasmic reticulum and, hence will be within the virion after budding. Therefore the pre-S region is not N-glycosylated. Later a post-translational translocation of N-terminal pre-S and TM1 domains occur in about 50% of proteins at the virion surface. These molecules change their topology by an unknown mechanism, resulting in exposure of pre-S region at virion surface. For isoform M in contrast, the pre-S2 region is translocated cotranslationally to the endoplasmic reticulum lumen and is N-glycosylated.' .
?annotation12 a up:PTM_Annotation ;
rdfs:comment 'Isoform M is N-terminally acetylated by host at a ratio of 90%, and N-glycosylated by host at the pre-S2 region.' .
?annotation13 a up:PTM_Annotation ;
rdfs:comment 'Myristoylated.' .
?annotation14 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the orthohepadnavirus major surface antigen family.' .
?pfs15 up:annotation ?annotation16 .
?annotation16 faldo:begin ?pfsb17 ;
faldo:end ?pfse18 ;
rdf:type up:Chain_Annotation ;
rdfs:comment 'Large envelope protein' .
?pfsb17 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfse18 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfs21 up:annotation ?annotation22 .
?annotation22 faldo:begin ?pfsb23 ;
faldo:end ?pfse24 ;
rdf:type up:Topological_Domain_Annotation ;
rdfs:comment 'Intravirion; in internal conformation' .
?pfsb23 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?pfse24 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?pfs27 up:annotation ?annotation28 .
?annotation28 faldo:begin ?pfsb29 ;
faldo:end ?pfse30 ;
rdf:type up:Topological_Domain_Annotation ;
rdfs:comment 'Virion surface; in external conformation' .
?pfsb29 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?pfse30 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?pfs33 up:annotation ?annotation34 .
?annotation34 faldo:begin ?pfsb35 ;
faldo:end ?pfse36 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical; Name=TM1; Note=In external conformation' .
?pfsb35 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?pfse36 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?pfs39 up:annotation ?annotation40 .
?annotation40 faldo:begin ?pfsb41 ;
faldo:end ?pfse42 ;
rdf:type up:Topological_Domain_Annotation ;
rdfs:comment 'Intravirion; in external conformation' .
?pfsb41 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?pfse42 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?pfs45 up:annotation ?annotation46 .
?annotation46 faldo:begin ?pfsb47 ;
faldo:end ?pfse48 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical; Name=TM2' .
?pfsb47 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?pfse48 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?pfs51 up:annotation ?annotation52 .
?annotation52 faldo:begin ?pfsb53 ;
faldo:end ?pfse54 ;
rdf:type up:Topological_Domain_Annotation ;
rdfs:comment 'Virion surface' .
?pfsb53 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
?pfse54 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?pfs57 up:annotation ?annotation58 .
?annotation58 faldo:begin ?pfsb59 ;
faldo:end ?pfse60 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical' .
?pfsb59 faldo:position ?thisPositionOn61 ;
rdf:type faldo:ExactPosition .
?pfse60 faldo:position ?thisPositionOn62 ;
rdf:type faldo:ExactPosition .
?pfs63 up:annotation ?annotation64 .
?annotation64 faldo:begin ?pfsb65 ;
faldo:end ?pfse66 ;
rdf:type up:Topological_Domain_Annotation ;
rdfs:comment 'Intravirion' .
?pfsb65 faldo:position ?thisPositionOn67 ;
rdf:type faldo:ExactPosition .
?pfse66 faldo:position ?thisPositionOn68 ;
rdf:type faldo:ExactPosition .
?pfs69 up:annotation ?annotation70 .
?annotation70 faldo:begin ?pfsb71 ;
faldo:end ?pfse72 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical; Name=TM3' .
?pfsb71 faldo:position ?thisPositionOn73 ;
rdf:type faldo:ExactPosition .
?pfse72 faldo:position ?thisPositionOn74 ;
rdf:type faldo:ExactPosition .
?pfs75 up:annotation ?annotation76 .
?annotation76 faldo:begin ?pfsb77 ;
faldo:end ?pfse78 ;
rdf:type up:Topological_Domain_Annotation ;
rdfs:comment 'Virion surface' .
?pfsb77 faldo:position ?thisPositionOn79 ;
rdf:type faldo:ExactPosition .
?pfse78 faldo:position ?thisPositionOn80 ;
rdf:type faldo:ExactPosition .
?pfs81 up:annotation ?annotation82 .
?annotation82 faldo:begin ?pfsb83 ;
faldo:end ?pfse84 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Pre-S' .
?pfsb83 faldo:position ?thisPositionOn85 ;
rdf:type faldo:ExactPosition .
?pfse84 faldo:position ?thisPositionOn86 ;
rdf:type faldo:ExactPosition .
?pfs87 up:annotation ?annotation88 .
?annotation88 faldo:begin ?pfsb89 ;
faldo:end ?pfse90 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Pre-S1' .
?pfsb89 faldo:position ?thisPositionOn91 ;
rdf:type faldo:ExactPosition .
?pfse90 faldo:position ?thisPositionOn92 ;
rdf:type faldo:ExactPosition .
?pfs93 up:annotation ?annotation94 .
?annotation94 faldo:begin ?pfsb95 ;
faldo:end ?pfse96 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Pre-S2' .
?pfsb95 faldo:position ?thisPositionOn97 ;
rdf:type faldo:ExactPosition .
?pfse96 faldo:position ?thisPositionOn98 ;
rdf:type faldo:ExactPosition .
?pfs99 up:annotation ?annotation100 .
?annotation100 faldo:begin ?pfsb101 ;
faldo:end ?pfse102 ;
rdf:type up:Initiator_Methionine_Annotation ;
rdfs:comment 'Removed; by host' .
?pfsb101 faldo:position ?thisPositionOn103 ;
rdf:type faldo:ExactPosition .
?pfse102 faldo:position ?thisPositionOn104 ;
rdf:type faldo:ExactPosition .
?pfs105 up:annotation ?annotation106 .
?annotation106 faldo:begin ?pfsb107 ;
faldo:end ?pfse108 ;
rdf:type up:Lipidation_Annotation ;
rdfs:comment 'N-myristoyl glycine; by host' .
?pfsb107 faldo:position ?thisPositionOn109 ;
rdf:type faldo:ExactPosition .
?pfse108 faldo:position ?thisPositionOn110 ;
rdf:type faldo:ExactPosition .
_:930579 a rdf:Statement ;
up:attribution _:930529 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:930580 a rdf:Statement ;
up:attribution _:930530 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:930581 a rdf:Statement ;
up:attribution _:930531 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:930582 a rdf:Statement ;
up:attribution _:930532 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name3 .
_:930583 a rdf:Statement ;
up:attribution _:930533 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name4 .
_:930584 a rdf:Statement ;
up:attribution _:930534 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name5 .
_:930585 a rdf:Statement ;
up:attribution _:930535 ;
rdf:subject ?gene6 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene6 .
_:930586 a rdf:Statement ;
up:attribution _:930536 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:930587 a rdf:Statement ;
up:attribution _:930537 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:930588 a rdf:Statement ;
up:attribution _:930538 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:930589 a rdf:Statement ;
up:attribution _:930539 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:930590 a rdf:Statement ;
up:attribution _:930540 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:930591 a rdf:Statement ;
up:attribution _:930541 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:930592 a rdf:Statement ;
up:attribution _:930542 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:930593 a rdf:Statement ;
up:attribution _:930543 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:7 .
_:930594 a rdf:Statement ;
up:attribution _:930544 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1166 .
_:930595 a rdf:Statement ;
up:attribution _:930545 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1170 .
_:930596 a rdf:Statement ;
up:attribution _:930546 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1168 .
_:930597 a rdf:Statement ;
up:attribution _:930547 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:325 .
_:930598 a rdf:Statement ;
up:attribution _:930548 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:945 .
_:930599 a rdf:Statement ;
up:attribution _:930549 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:449 .
_:930600 a rdf:Statement ;
up:attribution _:930550 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:930601 a rdf:Statement ;
up:attribution _:930551 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:519 .
_:930602 a rdf:Statement ;
up:attribution _:930552 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:812 .
_:930603 a rdf:Statement ;
up:attribution _:930553 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1133 .
_:930604 a rdf:Statement ;
up:attribution _:930554 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1161 .
_:930605 a rdf:Statement ;
up:attribution _:930555 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1162 .
_:930606 a rdf:Statement ;
up:attribution _:930556 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:946 .
_:930607 a rdf:Statement ;
up:attribution _:930557 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1164 .
_:930608 a rdf:Statement ;
up:attribution _:930558 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1160 .
_:930609 a rdf:Statement ;
up:attribution _:930559 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016020 .
_:930610 a rdf:Statement ;
up:attribution _:930560 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0055036 .
_:930611 a rdf:Statement ;
up:attribution _:930561 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0039663 .
_:930612 a rdf:Statement ;
up:attribution _:930562 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019062 .
_:930613 a rdf:Statement ;
up:source unirule:MF_04075 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:930614 a rdf:Statement ;
up:attribution _:930563 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:930615 a rdf:Statement ;
up:source unirule:MF_04075 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:930616 a rdf:Statement ;
up:attribution _:930564 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:930617 a rdf:Statement ;
up:source unirule:MF_04075 ;
rdf:subject ?pfs27 ;
rdf:predicate up:annotation ;
rdf:object ?annotation28 .
_:930618 a rdf:Statement ;
up:attribution _:930565 ;
rdf:subject ?pfs27 ;
rdf:predicate up:annotation ;
rdf:object ?annotation28 .
_:930619 a rdf:Statement ;
up:source unirule:MF_04075 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:930620 a rdf:Statement ;
up:attribution _:930566 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:930621 a rdf:Statement ;
up:source unirule:MF_04075 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:930622 a rdf:Statement ;
up:attribution _:930567 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:930623 a rdf:Statement ;
up:source unirule:MF_04075 ;
rdf:subject ?pfs45 ;
rdf:predicate up:annotation ;
rdf:object ?annotation46 .
_:930624 a rdf:Statement ;
up:attribution _:930568 ;
rdf:subject ?pfs45 ;
rdf:predicate up:annotation ;
rdf:object ?annotation46 .
_:930625 a rdf:Statement ;
up:source unirule:MF_04075 ;
rdf:subject ?pfs51 ;
rdf:predicate up:annotation ;
rdf:object ?annotation52 .
_:930626 a rdf:Statement ;
up:attribution _:930569 ;
rdf:subject ?pfs51 ;
rdf:predicate up:annotation ;
rdf:object ?annotation52 .
_:930627 a rdf:Statement ;
up:source unirule:MF_04075 ;
rdf:subject ?pfs57 ;
rdf:predicate up:annotation ;
rdf:object ?annotation58 .
_:930628 a rdf:Statement ;
up:attribution _:930570 ;
rdf:subject ?pfs57 ;
rdf:predicate up:annotation ;
rdf:object ?annotation58 .
_:930629 a rdf:Statement ;
up:source unirule:MF_04075 ;
rdf:subject ?pfs63 ;
rdf:predicate up:annotation ;
rdf:object ?annotation64 .
_:930630 a rdf:Statement ;
up:attribution _:930571 ;
rdf:subject ?pfs63 ;
rdf:predicate up:annotation ;
rdf:object ?annotation64 .
_:930631 a rdf:Statement ;
up:source unirule:MF_04075 ;
rdf:subject ?pfs69 ;
rdf:predicate up:annotation ;
rdf:object ?annotation70 .
_:930632 a rdf:Statement ;
up:attribution _:930572 ;
rdf:subject ?pfs69 ;
rdf:predicate up:annotation ;
rdf:object ?annotation70 .
_:930633 a rdf:Statement ;
up:source unirule:MF_04075 ;
rdf:subject ?pfs75 ;
rdf:predicate up:annotation ;
rdf:object ?annotation76 .
_:930634 a rdf:Statement ;
up:attribution _:930573 ;
rdf:subject ?pfs75 ;
rdf:predicate up:annotation ;
rdf:object ?annotation76 .
_:930635 a rdf:Statement ;
up:source unirule:MF_04075 ;
rdf:subject ?pfs81 ;
rdf:predicate up:annotation ;
rdf:object ?annotation82 .
_:930636 a rdf:Statement ;
up:attribution _:930574 ;
rdf:subject ?pfs81 ;
rdf:predicate up:annotation ;
rdf:object ?annotation82 .
_:930637 a rdf:Statement ;
up:source unirule:MF_04075 ;
rdf:subject ?pfs87 ;
rdf:predicate up:annotation ;
rdf:object ?annotation88 .
_:930638 a rdf:Statement ;
up:attribution _:930575 ;
rdf:subject ?pfs87 ;
rdf:predicate up:annotation ;
rdf:object ?annotation88 .
_:930639 a rdf:Statement ;
up:source unirule:MF_04075 ;
rdf:subject ?pfs93 ;
rdf:predicate up:annotation ;
rdf:object ?annotation94 .
_:930640 a rdf:Statement ;
up:attribution _:930576 ;
rdf:subject ?pfs93 ;
rdf:predicate up:annotation ;
rdf:object ?annotation94 .
_:930641 a rdf:Statement ;
up:source unirule:MF_04075 ;
rdf:subject ?pfs99 ;
rdf:predicate up:annotation ;
rdf:object ?annotation100 .
_:930642 a rdf:Statement ;
up:attribution _:930577 ;
rdf:subject ?pfs99 ;
rdf:predicate up:annotation ;
rdf:object ?annotation100 .
_:930643 a rdf:Statement ;
up:source unirule:MF_04075 ;
rdf:subject ?pfs105 ;
rdf:predicate up:annotation ;
rdf:object ?annotation106 .
_:930644 a rdf:Statement ;
up:attribution _:930578 ;
rdf:subject ?pfs105 ;
rdf:predicate up:annotation ;
rdf:object ?annotation106 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_04075
#Rule MF_04075 Created by:? on:2017-05-11 Modified by:Edouard de Castro on:2022-09-29
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_04075 .
?thisOrganism rdfs:subClassOf+ taxon:10405 .
BIND(URI(CONCAT(STR(?this), '#MF_04075a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_04075a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_04075a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_04075a3')) AS ?name3) .
BIND(URI(CONCAT(STR(?this), '#MF_04075a4')) AS ?name4) .
BIND(URI(CONCAT(STR(?this), '#MF_04075a5')) AS ?name5) .
BIND(URI(CONCAT(STR(?this), '#MF_04075a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_04075a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_04075a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_04075a11')) AS ?annotation11) .
BIND(URI(CONCAT(STR(?this), '#MF_04075a12')) AS ?annotation12) .
BIND(URI(CONCAT(STR(?this), '#MF_04075a13')) AS ?annotation13) .
BIND(URI(CONCAT(STR(?this), '#MF_04075a14')) AS ?annotation14) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch115 faldo:location ?templateMotifSequenceMatchRegionQ76R62116 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ76R62118 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ76R62MF_04075111 .
?templateMotifSequenceMatchRegionQ76R62116 faldo:begin ?templateMotifSequenceMatchBeginQ76R62117 .
?templateMotifSequenceMatchBeginQ76R62117 faldo:position ?templateMotifSequenceMatchBeginPositionQ76R62112 ;
faldo:reference isoform:Q76R62-1 .
?templateMotifSequenceProfileAlignmentOperationQ76R62118 edam:has_input signature:MF_04075 ;
rdf:type edam:operation_0300 .
?targetMotifMatch119 faldo:location ?targetMotifMatchRegionMatch120 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04075122 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ76R62MF_04075113 .
?targetMotifMatchRegionMatch120 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04075121 .
?targetMotifMatchRegionMatchBeginMF_04075121 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04075114 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04075122 edam:has_input signature:MF_04075 ;
rdf:type edam:operation_0300 .
BIND(1 AS ?thisPositionOn19) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn20) .
BIND(?this AS ?pfs1t123) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb17) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse18) .
FILTER ((BOUND(?thisPositionOn19) && BOUND(?thisPositionOn20))) .
BIND(URI(CONCAT(STR(?this), '#MF_04075a16')) AS ?annotation16) .
BIND(?this AS ?pfs15) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch128 faldo:location ?templateMotifSequenceMatchRegionQ76R62129 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ76R62131 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ76R62MF_04075124 .
?templateMotifSequenceMatchRegionQ76R62129 faldo:begin ?templateMotifSequenceMatchBeginQ76R62130 .
?templateMotifSequenceMatchBeginQ76R62130 faldo:position ?templateMotifSequenceMatchBeginPositionQ76R62125 ;
faldo:reference isoform:Q76R62-1 .
?templateMotifSequenceProfileAlignmentOperationQ76R62131 edam:has_input signature:MF_04075 ;
rdf:type edam:operation_0300 .
?targetMotifMatch132 faldo:location ?targetMotifMatchRegionMatch133 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04075135 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ76R62MF_04075126 .
?targetMotifMatchRegionMatch133 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04075134 .
?targetMotifMatchRegionMatchBeginMF_04075134 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04075127 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04075135 edam:has_input signature:MF_04075 ;
rdf:type edam:operation_0300 .
BIND(1 AS ?thisPositionOn25) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ76R62MF_04075124, 1, (STRLEN(?templateMotifCigarQ76R62MF_04075124) - STRLEN(REPLACE(?templateMotifCigarQ76R62MF_04075124, CONCAT('^(?:-*[^-]){', STR(((253 - ?templateMotifSequenceMatchBeginPositionQ76R62125) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1136) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ76R62MF_04075126, 1, (STRLEN(?targetMotifMatchCigarQ76R62MF_04075126) - STRLEN(REPLACE(?targetMotifMatchCigarQ76R62MF_04075126, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1136), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ76R62MF_04075126, 1, (STRLEN(?targetMotifMatchCigarQ76R62MF_04075126) - STRLEN(REPLACE(?targetMotifMatchCigarQ76R62MF_04075126, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1136), '}'), '')))), '[^-]', ''))) AS ?step2137) .
BIND(((?step2137 + ?targetMotifMatchRegionMatchBeginPositionMF_04075127) - 1) AS ?thisPositionOn26) .
BIND(?this AS ?pfs1t138) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfsb23) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfse24) .
FILTER ((BOUND(?thisPositionOn25) && BOUND(?thisPositionOn26))) .
BIND(URI(CONCAT(STR(?this), '#MF_04075a22')) AS ?annotation22) .
BIND(?this AS ?pfs21) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch143 faldo:location ?templateMotifSequenceMatchRegionQ76R62144 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ76R62146 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ76R62MF_04075139 .
?templateMotifSequenceMatchRegionQ76R62144 faldo:begin ?templateMotifSequenceMatchBeginQ76R62145 .
?templateMotifSequenceMatchBeginQ76R62145 faldo:position ?templateMotifSequenceMatchBeginPositionQ76R62140 ;
faldo:reference isoform:Q76R62-1 .
?templateMotifSequenceProfileAlignmentOperationQ76R62146 edam:has_input signature:MF_04075 ;
rdf:type edam:operation_0300 .
?targetMotifMatch147 faldo:location ?targetMotifMatchRegionMatch148 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04075150 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ76R62MF_04075141 .
?targetMotifMatchRegionMatch148 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04075149 .
?targetMotifMatchRegionMatchBeginMF_04075149 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04075142 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04075150 edam:has_input signature:MF_04075 ;
rdf:type edam:operation_0300 .
BIND(1 AS ?thisPositionOn31) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ76R62MF_04075139, 1, (STRLEN(?templateMotifCigarQ76R62MF_04075139) - STRLEN(REPLACE(?templateMotifCigarQ76R62MF_04075139, CONCAT('^(?:-*[^-]){', STR(((181 - ?templateMotifSequenceMatchBeginPositionQ76R62140) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1151) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ76R62MF_04075141, 1, (STRLEN(?targetMotifMatchCigarQ76R62MF_04075141) - STRLEN(REPLACE(?targetMotifMatchCigarQ76R62MF_04075141, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1151), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ76R62MF_04075141, 1, (STRLEN(?targetMotifMatchCigarQ76R62MF_04075141) - STRLEN(REPLACE(?targetMotifMatchCigarQ76R62MF_04075141, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1151), '}'), '')))), '[^-]', ''))) AS ?step2152) .
BIND(((?step2152 + ?targetMotifMatchRegionMatchBeginPositionMF_04075142) - 1) AS ?thisPositionOn32) .
BIND(?this AS ?pfs1t153) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb29) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse30) .
FILTER ((BOUND(?thisPositionOn31) && BOUND(?thisPositionOn32))) .
BIND(URI(CONCAT(STR(?this), '#MF_04075a28')) AS ?annotation28) .
BIND(?this AS ?pfs27) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch158 faldo:location ?templateMotifSequenceMatchRegionQ76R62159 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ76R62161 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ76R62MF_04075154 .
?templateMotifSequenceMatchRegionQ76R62159 faldo:begin ?templateMotifSequenceMatchBeginQ76R62160 .
?templateMotifSequenceMatchBeginQ76R62160 faldo:position ?templateMotifSequenceMatchBeginPositionQ76R62155 ;
faldo:reference isoform:Q76R62-1 .
?templateMotifSequenceProfileAlignmentOperationQ76R62161 edam:has_input signature:MF_04075 ;
rdf:type edam:operation_0300 .
?targetMotifMatch162 faldo:location ?targetMotifMatchRegionMatch163 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04075165 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ76R62MF_04075156 .
?targetMotifMatchRegionMatch163 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04075164 .
?targetMotifMatchRegionMatchBeginMF_04075164 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04075157 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04075165 edam:has_input signature:MF_04075 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ76R62MF_04075154, 1, (STRLEN(?templateMotifCigarQ76R62MF_04075154) - STRLEN(REPLACE(?templateMotifCigarQ76R62MF_04075154, CONCAT('^(?:-*[^-]){', STR(((182 - ?templateMotifSequenceMatchBeginPositionQ76R62155) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1166) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ76R62MF_04075156, 1, (STRLEN(?targetMotifMatchCigarQ76R62MF_04075156) - STRLEN(REPLACE(?targetMotifMatchCigarQ76R62MF_04075156, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1166), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ76R62MF_04075156, 1, (STRLEN(?targetMotifMatchCigarQ76R62MF_04075156) - STRLEN(REPLACE(?targetMotifMatchCigarQ76R62MF_04075156, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1166), '}'), '')))), '[^-]', ''))) AS ?step2167) .
BIND(((?step2167 + ?targetMotifMatchRegionMatchBeginPositionMF_04075157) - 1) AS ?thisPositionOn37) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ76R62MF_04075154, 1, (STRLEN(?templateMotifCigarQ76R62MF_04075154) - STRLEN(REPLACE(?templateMotifCigarQ76R62MF_04075154, CONCAT('^(?:-*[^-]){', STR(((202 - ?templateMotifSequenceMatchBeginPositionQ76R62155) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1168) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ76R62MF_04075156, 1, (STRLEN(?targetMotifMatchCigarQ76R62MF_04075156) - STRLEN(REPLACE(?targetMotifMatchCigarQ76R62MF_04075156, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1168), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ76R62MF_04075156, 1, (STRLEN(?targetMotifMatchCigarQ76R62MF_04075156) - STRLEN(REPLACE(?targetMotifMatchCigarQ76R62MF_04075156, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1168), '}'), '')))), '[^-]', ''))) AS ?step2169) .
BIND(((?step2169 + ?targetMotifMatchRegionMatchBeginPositionMF_04075157) - 1) AS ?thisPositionOn38) .
BIND(?this AS ?pfs1t170) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfsb35) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfse36) .
FILTER ((BOUND(?thisPositionOn37) && BOUND(?thisPositionOn38))) .
BIND(URI(CONCAT(STR(?this), '#MF_04075a34')) AS ?annotation34) .
BIND(?this AS ?pfs33) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch175 faldo:location ?templateMotifSequenceMatchRegionQ76R62176 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ76R62178 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ76R62MF_04075171 .
?templateMotifSequenceMatchRegionQ76R62176 faldo:begin ?templateMotifSequenceMatchBeginQ76R62177 .
?templateMotifSequenceMatchBeginQ76R62177 faldo:position ?templateMotifSequenceMatchBeginPositionQ76R62172 ;
faldo:reference isoform:Q76R62-1 .
?templateMotifSequenceProfileAlignmentOperationQ76R62178 edam:has_input signature:MF_04075 ;
rdf:type edam:operation_0300 .
?targetMotifMatch179 faldo:location ?targetMotifMatchRegionMatch180 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04075182 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ76R62MF_04075173 .
?targetMotifMatchRegionMatch180 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04075181 .
?targetMotifMatchRegionMatchBeginMF_04075181 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04075174 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04075182 edam:has_input signature:MF_04075 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ76R62MF_04075171, 1, (STRLEN(?templateMotifCigarQ76R62MF_04075171) - STRLEN(REPLACE(?templateMotifCigarQ76R62MF_04075171, CONCAT('^(?:-*[^-]){', STR(((203 - ?templateMotifSequenceMatchBeginPositionQ76R62172) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1183) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ76R62MF_04075173, 1, (STRLEN(?targetMotifMatchCigarQ76R62MF_04075173) - STRLEN(REPLACE(?targetMotifMatchCigarQ76R62MF_04075173, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1183), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ76R62MF_04075173, 1, (STRLEN(?targetMotifMatchCigarQ76R62MF_04075173) - STRLEN(REPLACE(?targetMotifMatchCigarQ76R62MF_04075173, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1183), '}'), '')))), '[^-]', ''))) AS ?step2184) .
BIND(((?step2184 + ?targetMotifMatchRegionMatchBeginPositionMF_04075174) - 1) AS ?thisPositionOn43) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ76R62MF_04075171, 1, (STRLEN(?templateMotifCigarQ76R62MF_04075171) - STRLEN(REPLACE(?templateMotifCigarQ76R62MF_04075171, CONCAT('^(?:-*[^-]){', STR(((253 - ?templateMotifSequenceMatchBeginPositionQ76R62172) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1185) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ76R62MF_04075173, 1, (STRLEN(?targetMotifMatchCigarQ76R62MF_04075173) - STRLEN(REPLACE(?targetMotifMatchCigarQ76R62MF_04075173, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1185), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ76R62MF_04075173, 1, (STRLEN(?targetMotifMatchCigarQ76R62MF_04075173) - STRLEN(REPLACE(?targetMotifMatchCigarQ76R62MF_04075173, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1185), '}'), '')))), '[^-]', ''))) AS ?step2186) .
BIND(((?step2186 + ?targetMotifMatchRegionMatchBeginPositionMF_04075174) - 1) AS ?thisPositionOn44) .
BIND(?this AS ?pfs1t187) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfsb41) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfse42) .
FILTER ((BOUND(?thisPositionOn43) && BOUND(?thisPositionOn44))) .
BIND(URI(CONCAT(STR(?this), '#MF_04075a40')) AS ?annotation40) .
BIND(?this AS ?pfs39) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch192 faldo:location ?templateMotifSequenceMatchRegionQ76R62193 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ76R62195 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ76R62MF_04075188 .
?templateMotifSequenceMatchRegionQ76R62193 faldo:begin ?templateMotifSequenceMatchBeginQ76R62194 .
?templateMotifSequenceMatchBeginQ76R62194 faldo:position ?templateMotifSequenceMatchBeginPositionQ76R62189 ;
faldo:reference isoform:Q76R62-1 .
?templateMotifSequenceProfileAlignmentOperationQ76R62195 edam:has_input signature:MF_04075 ;
rdf:type edam:operation_0300 .
?targetMotifMatch196 faldo:location ?targetMotifMatchRegionMatch197 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04075199 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ76R62MF_04075190 .
?targetMotifMatchRegionMatch197 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04075198 .
?targetMotifMatchRegionMatchBeginMF_04075198 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04075191 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04075199 edam:has_input signature:MF_04075 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ76R62MF_04075188, 1, (STRLEN(?templateMotifCigarQ76R62MF_04075188) - STRLEN(REPLACE(?templateMotifCigarQ76R62MF_04075188, CONCAT('^(?:-*[^-]){', STR(((254 - ?templateMotifSequenceMatchBeginPositionQ76R62189) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1200) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ76R62MF_04075190, 1, (STRLEN(?targetMotifMatchCigarQ76R62MF_04075190) - STRLEN(REPLACE(?targetMotifMatchCigarQ76R62MF_04075190, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1200), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ76R62MF_04075190, 1, (STRLEN(?targetMotifMatchCigarQ76R62MF_04075190) - STRLEN(REPLACE(?targetMotifMatchCigarQ76R62MF_04075190, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1200), '}'), '')))), '[^-]', ''))) AS ?step2201) .
BIND(((?step2201 + ?targetMotifMatchRegionMatchBeginPositionMF_04075191) - 1) AS ?thisPositionOn49) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ76R62MF_04075188, 1, (STRLEN(?templateMotifCigarQ76R62MF_04075188) - STRLEN(REPLACE(?templateMotifCigarQ76R62MF_04075188, CONCAT('^(?:-*[^-]){', STR(((274 - ?templateMotifSequenceMatchBeginPositionQ76R62189) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1202) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ76R62MF_04075190, 1, (STRLEN(?targetMotifMatchCigarQ76R62MF_04075190) - STRLEN(REPLACE(?targetMotifMatchCigarQ76R62MF_04075190, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1202), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ76R62MF_04075190, 1, (STRLEN(?targetMotifMatchCigarQ76R62MF_04075190) - STRLEN(REPLACE(?targetMotifMatchCigarQ76R62MF_04075190, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1202), '}'), '')))), '[^-]', ''))) AS ?step2203) .
BIND(((?step2203 + ?targetMotifMatchRegionMatchBeginPositionMF_04075191) - 1) AS ?thisPositionOn50) .
BIND(?this AS ?pfs1t204) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfsb47) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfse48) .
FILTER ((BOUND(?thisPositionOn49) && BOUND(?thisPositionOn50))) .
BIND(URI(CONCAT(STR(?this), '#MF_04075a46')) AS ?annotation46) .
BIND(?this AS ?pfs45) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch209 faldo:location ?templateMotifSequenceMatchRegionQ76R62210 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ76R62212 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ76R62MF_04075205 .
?templateMotifSequenceMatchRegionQ76R62210 faldo:begin ?templateMotifSequenceMatchBeginQ76R62211 .
?templateMotifSequenceMatchBeginQ76R62211 faldo:position ?templateMotifSequenceMatchBeginPositionQ76R62206 ;
faldo:reference isoform:Q76R62-1 .
?templateMotifSequenceProfileAlignmentOperationQ76R62212 edam:has_input signature:MF_04075 ;
rdf:type edam:operation_0300 .
?targetMotifMatch213 faldo:location ?targetMotifMatchRegionMatch214 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04075216 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ76R62MF_04075207 .
?targetMotifMatchRegionMatch214 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04075215 .
?targetMotifMatchRegionMatchBeginMF_04075215 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04075208 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04075216 edam:has_input signature:MF_04075 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ76R62MF_04075205, 1, (STRLEN(?templateMotifCigarQ76R62MF_04075205) - STRLEN(REPLACE(?templateMotifCigarQ76R62MF_04075205, CONCAT('^(?:-*[^-]){', STR(((275 - ?templateMotifSequenceMatchBeginPositionQ76R62206) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1217) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ76R62MF_04075207, 1, (STRLEN(?targetMotifMatchCigarQ76R62MF_04075207) - STRLEN(REPLACE(?targetMotifMatchCigarQ76R62MF_04075207, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1217), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ76R62MF_04075207, 1, (STRLEN(?targetMotifMatchCigarQ76R62MF_04075207) - STRLEN(REPLACE(?targetMotifMatchCigarQ76R62MF_04075207, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1217), '}'), '')))), '[^-]', ''))) AS ?step2218) .
BIND(((?step2218 + ?targetMotifMatchRegionMatchBeginPositionMF_04075208) - 1) AS ?thisPositionOn55) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ76R62MF_04075205, 1, (STRLEN(?templateMotifCigarQ76R62MF_04075205) - STRLEN(REPLACE(?templateMotifCigarQ76R62MF_04075205, CONCAT('^(?:-*[^-]){', STR(((348 - ?templateMotifSequenceMatchBeginPositionQ76R62206) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1219) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ76R62MF_04075207, 1, (STRLEN(?targetMotifMatchCigarQ76R62MF_04075207) - STRLEN(REPLACE(?targetMotifMatchCigarQ76R62MF_04075207, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1219), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ76R62MF_04075207, 1, (STRLEN(?targetMotifMatchCigarQ76R62MF_04075207) - STRLEN(REPLACE(?targetMotifMatchCigarQ76R62MF_04075207, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1219), '}'), '')))), '[^-]', ''))) AS ?step2220) .
BIND(((?step2220 + ?targetMotifMatchRegionMatchBeginPositionMF_04075208) - 1) AS ?thisPositionOn56) .
BIND(?this AS ?pfs1t221) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfsb53) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfse54) .
FILTER ((BOUND(?thisPositionOn55) && BOUND(?thisPositionOn56))) .
BIND(URI(CONCAT(STR(?this), '#MF_04075a52')) AS ?annotation52) .
BIND(?this AS ?pfs51) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch226 faldo:location ?templateMotifSequenceMatchRegionQ76R62227 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ76R62229 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ76R62MF_04075222 .
?templateMotifSequenceMatchRegionQ76R62227 faldo:begin ?templateMotifSequenceMatchBeginQ76R62228 .
?templateMotifSequenceMatchBeginQ76R62228 faldo:position ?templateMotifSequenceMatchBeginPositionQ76R62223 ;
faldo:reference isoform:Q76R62-1 .
?templateMotifSequenceProfileAlignmentOperationQ76R62229 edam:has_input signature:MF_04075 ;
rdf:type edam:operation_0300 .
?targetMotifMatch230 faldo:location ?targetMotifMatchRegionMatch231 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04075233 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ76R62MF_04075224 .
?targetMotifMatchRegionMatch231 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04075232 .
?targetMotifMatchRegionMatchBeginMF_04075232 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04075225 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04075233 edam:has_input signature:MF_04075 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ76R62MF_04075222, 1, (STRLEN(?templateMotifCigarQ76R62MF_04075222) - STRLEN(REPLACE(?templateMotifCigarQ76R62MF_04075222, CONCAT('^(?:-*[^-]){', STR(((349 - ?templateMotifSequenceMatchBeginPositionQ76R62223) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1234) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ76R62MF_04075224, 1, (STRLEN(?targetMotifMatchCigarQ76R62MF_04075224) - STRLEN(REPLACE(?targetMotifMatchCigarQ76R62MF_04075224, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1234), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ76R62MF_04075224, 1, (STRLEN(?targetMotifMatchCigarQ76R62MF_04075224) - STRLEN(REPLACE(?targetMotifMatchCigarQ76R62MF_04075224, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1234), '}'), '')))), '[^-]', ''))) AS ?step2235) .
BIND(((?step2235 + ?targetMotifMatchRegionMatchBeginPositionMF_04075225) - 1) AS ?thisPositionOn61) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ76R62MF_04075222, 1, (STRLEN(?templateMotifCigarQ76R62MF_04075222) - STRLEN(REPLACE(?templateMotifCigarQ76R62MF_04075222, CONCAT('^(?:-*[^-]){', STR(((369 - ?templateMotifSequenceMatchBeginPositionQ76R62223) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1236) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ76R62MF_04075224, 1, (STRLEN(?targetMotifMatchCigarQ76R62MF_04075224) - STRLEN(REPLACE(?targetMotifMatchCigarQ76R62MF_04075224, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1236), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ76R62MF_04075224, 1, (STRLEN(?targetMotifMatchCigarQ76R62MF_04075224) - STRLEN(REPLACE(?targetMotifMatchCigarQ76R62MF_04075224, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1236), '}'), '')))), '[^-]', ''))) AS ?step2237) .
BIND(((?step2237 + ?targetMotifMatchRegionMatchBeginPositionMF_04075225) - 1) AS ?thisPositionOn62) .
BIND(?this AS ?pfs1t238) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfsb59) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfse60) .
FILTER ((BOUND(?thisPositionOn61) && BOUND(?thisPositionOn62))) .
BIND(URI(CONCAT(STR(?this), '#MF_04075a58')) AS ?annotation58) .
BIND(?this AS ?pfs57) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch243 faldo:location ?templateMotifSequenceMatchRegionQ76R62244 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ76R62246 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ76R62MF_04075239 .
?templateMotifSequenceMatchRegionQ76R62244 faldo:begin ?templateMotifSequenceMatchBeginQ76R62245 .
?templateMotifSequenceMatchBeginQ76R62245 faldo:position ?templateMotifSequenceMatchBeginPositionQ76R62240 ;
faldo:reference isoform:Q76R62-1 .
?templateMotifSequenceProfileAlignmentOperationQ76R62246 edam:has_input signature:MF_04075 ;
rdf:type edam:operation_0300 .
?targetMotifMatch247 faldo:location ?targetMotifMatchRegionMatch248 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04075250 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ76R62MF_04075241 .
?targetMotifMatchRegionMatch248 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04075249 .
?targetMotifMatchRegionMatchBeginMF_04075249 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04075242 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04075250 edam:has_input signature:MF_04075 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ76R62MF_04075239, 1, (STRLEN(?templateMotifCigarQ76R62MF_04075239) - STRLEN(REPLACE(?templateMotifCigarQ76R62MF_04075239, CONCAT('^(?:-*[^-]){', STR(((370 - ?templateMotifSequenceMatchBeginPositionQ76R62240) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1251) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ76R62MF_04075241, 1, (STRLEN(?targetMotifMatchCigarQ76R62MF_04075241) - STRLEN(REPLACE(?targetMotifMatchCigarQ76R62MF_04075241, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1251), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ76R62MF_04075241, 1, (STRLEN(?targetMotifMatchCigarQ76R62MF_04075241) - STRLEN(REPLACE(?targetMotifMatchCigarQ76R62MF_04075241, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1251), '}'), '')))), '[^-]', ''))) AS ?step2252) .
BIND(((?step2252 + ?targetMotifMatchRegionMatchBeginPositionMF_04075242) - 1) AS ?thisPositionOn67) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ76R62MF_04075239, 1, (STRLEN(?templateMotifCigarQ76R62MF_04075239) - STRLEN(REPLACE(?templateMotifCigarQ76R62MF_04075239, CONCAT('^(?:-*[^-]){', STR(((375 - ?templateMotifSequenceMatchBeginPositionQ76R62240) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1253) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ76R62MF_04075241, 1, (STRLEN(?targetMotifMatchCigarQ76R62MF_04075241) - STRLEN(REPLACE(?targetMotifMatchCigarQ76R62MF_04075241, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1253), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ76R62MF_04075241, 1, (STRLEN(?targetMotifMatchCigarQ76R62MF_04075241) - STRLEN(REPLACE(?targetMotifMatchCigarQ76R62MF_04075241, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1253), '}'), '')))), '[^-]', ''))) AS ?step2254) .
BIND(((?step2254 + ?targetMotifMatchRegionMatchBeginPositionMF_04075242) - 1) AS ?thisPositionOn68) .
BIND(?this AS ?pfs1t255) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfsb65) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn68))) AS ?pfse66) .
FILTER ((BOUND(?thisPositionOn67) && BOUND(?thisPositionOn68))) .
BIND(URI(CONCAT(STR(?this), '#MF_04075a64')) AS ?annotation64) .
BIND(?this AS ?pfs63) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch260 faldo:location ?templateMotifSequenceMatchRegionQ76R62261 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ76R62263 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ76R62MF_04075256 .
?templateMotifSequenceMatchRegionQ76R62261 faldo:begin ?templateMotifSequenceMatchBeginQ76R62262 .
?templateMotifSequenceMatchBeginQ76R62262 faldo:position ?templateMotifSequenceMatchBeginPositionQ76R62257 ;
faldo:reference isoform:Q76R62-1 .
?templateMotifSequenceProfileAlignmentOperationQ76R62263 edam:has_input signature:MF_04075 ;
rdf:type edam:operation_0300 .
?targetMotifMatch264 faldo:location ?targetMotifMatchRegionMatch265 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04075267 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ76R62MF_04075258 .
?targetMotifMatchRegionMatch265 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04075266 .
?targetMotifMatchRegionMatchBeginMF_04075266 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04075259 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04075267 edam:has_input signature:MF_04075 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ76R62MF_04075256, 1, (STRLEN(?templateMotifCigarQ76R62MF_04075256) - STRLEN(REPLACE(?templateMotifCigarQ76R62MF_04075256, CONCAT('^(?:-*[^-]){', STR(((376 - ?templateMotifSequenceMatchBeginPositionQ76R62257) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1268) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ76R62MF_04075258, 1, (STRLEN(?targetMotifMatchCigarQ76R62MF_04075258) - STRLEN(REPLACE(?targetMotifMatchCigarQ76R62MF_04075258, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1268), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ76R62MF_04075258, 1, (STRLEN(?targetMotifMatchCigarQ76R62MF_04075258) - STRLEN(REPLACE(?targetMotifMatchCigarQ76R62MF_04075258, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1268), '}'), '')))), '[^-]', ''))) AS ?step2269) .
BIND(((?step2269 + ?targetMotifMatchRegionMatchBeginPositionMF_04075259) - 1) AS ?thisPositionOn73) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ76R62MF_04075256, 1, (STRLEN(?templateMotifCigarQ76R62MF_04075256) - STRLEN(REPLACE(?templateMotifCigarQ76R62MF_04075256, CONCAT('^(?:-*[^-]){', STR(((398 - ?templateMotifSequenceMatchBeginPositionQ76R62257) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1270) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ76R62MF_04075258, 1, (STRLEN(?targetMotifMatchCigarQ76R62MF_04075258) - STRLEN(REPLACE(?targetMotifMatchCigarQ76R62MF_04075258, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1270), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ76R62MF_04075258, 1, (STRLEN(?targetMotifMatchCigarQ76R62MF_04075258) - STRLEN(REPLACE(?targetMotifMatchCigarQ76R62MF_04075258, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1270), '}'), '')))), '[^-]', ''))) AS ?step2271) .
BIND(((?step2271 + ?targetMotifMatchRegionMatchBeginPositionMF_04075259) - 1) AS ?thisPositionOn74) .
BIND(?this AS ?pfs1t272) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfsb71) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn74))) AS ?pfse72) .
FILTER ((BOUND(?thisPositionOn73) && BOUND(?thisPositionOn74))) .
BIND(URI(CONCAT(STR(?this), '#MF_04075a70')) AS ?annotation70) .
BIND(?this AS ?pfs69) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch277 faldo:location ?templateMotifSequenceMatchRegionQ76R62278 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ76R62280 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ76R62MF_04075273 .
?templateMotifSequenceMatchRegionQ76R62278 faldo:begin ?templateMotifSequenceMatchBeginQ76R62279 .
?templateMotifSequenceMatchBeginQ76R62279 faldo:position ?templateMotifSequenceMatchBeginPositionQ76R62274 ;
faldo:reference isoform:Q76R62-1 .
?templateMotifSequenceProfileAlignmentOperationQ76R62280 edam:has_input signature:MF_04075 ;
rdf:type edam:operation_0300 .
?targetMotifMatch281 faldo:location ?targetMotifMatchRegionMatch282 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04075284 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ76R62MF_04075275 .
?targetMotifMatchRegionMatch282 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04075283 .
?targetMotifMatchRegionMatchBeginMF_04075283 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04075276 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04075284 edam:has_input signature:MF_04075 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ76R62MF_04075273, 1, (STRLEN(?templateMotifCigarQ76R62MF_04075273) - STRLEN(REPLACE(?templateMotifCigarQ76R62MF_04075273, CONCAT('^(?:-*[^-]){', STR(((399 - ?templateMotifSequenceMatchBeginPositionQ76R62274) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1285) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ76R62MF_04075275, 1, (STRLEN(?targetMotifMatchCigarQ76R62MF_04075275) - STRLEN(REPLACE(?targetMotifMatchCigarQ76R62MF_04075275, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1285), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ76R62MF_04075275, 1, (STRLEN(?targetMotifMatchCigarQ76R62MF_04075275) - STRLEN(REPLACE(?targetMotifMatchCigarQ76R62MF_04075275, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1285), '}'), '')))), '[^-]', ''))) AS ?step2286) .
BIND(((?step2286 + ?targetMotifMatchRegionMatchBeginPositionMF_04075276) - 1) AS ?thisPositionOn79) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn80) .
BIND(?this AS ?pfs1t287) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn79))) AS ?pfsb77) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn80))) AS ?pfse78) .
FILTER ((BOUND(?thisPositionOn79) && BOUND(?thisPositionOn80))) .
BIND(URI(CONCAT(STR(?this), '#MF_04075a76')) AS ?annotation76) .
BIND(?this AS ?pfs75) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch292 faldo:location ?templateMotifSequenceMatchRegionQ76R62293 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ76R62295 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ76R62MF_04075288 .
?templateMotifSequenceMatchRegionQ76R62293 faldo:begin ?templateMotifSequenceMatchBeginQ76R62294 .
?templateMotifSequenceMatchBeginQ76R62294 faldo:position ?templateMotifSequenceMatchBeginPositionQ76R62289 ;
faldo:reference isoform:Q76R62-1 .
?templateMotifSequenceProfileAlignmentOperationQ76R62295 edam:has_input signature:MF_04075 ;
rdf:type edam:operation_0300 .
?targetMotifMatch296 faldo:location ?targetMotifMatchRegionMatch297 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04075299 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ76R62MF_04075290 .
?targetMotifMatchRegionMatch297 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04075298 .
?targetMotifMatchRegionMatchBeginMF_04075298 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04075291 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04075299 edam:has_input signature:MF_04075 ;
rdf:type edam:operation_0300 .
BIND(1 AS ?thisPositionOn85) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ76R62MF_04075288, 1, (STRLEN(?templateMotifCigarQ76R62MF_04075288) - STRLEN(REPLACE(?templateMotifCigarQ76R62MF_04075288, CONCAT('^(?:-*[^-]){', STR(((174 - ?templateMotifSequenceMatchBeginPositionQ76R62289) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1300) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ76R62MF_04075290, 1, (STRLEN(?targetMotifMatchCigarQ76R62MF_04075290) - STRLEN(REPLACE(?targetMotifMatchCigarQ76R62MF_04075290, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1300), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ76R62MF_04075290, 1, (STRLEN(?targetMotifMatchCigarQ76R62MF_04075290) - STRLEN(REPLACE(?targetMotifMatchCigarQ76R62MF_04075290, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1300), '}'), '')))), '[^-]', ''))) AS ?step2301) .
BIND(((?step2301 + ?targetMotifMatchRegionMatchBeginPositionMF_04075291) - 1) AS ?thisPositionOn86) .
BIND(?this AS ?pfs1t302) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn85))) AS ?pfsb83) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn86))) AS ?pfse84) .
FILTER ((BOUND(?thisPositionOn85) && BOUND(?thisPositionOn86))) .
BIND(URI(CONCAT(STR(?this), '#MF_04075a82')) AS ?annotation82) .
BIND(?this AS ?pfs81) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch307 faldo:location ?templateMotifSequenceMatchRegionQ76R62308 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ76R62310 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ76R62MF_04075303 .
?templateMotifSequenceMatchRegionQ76R62308 faldo:begin ?templateMotifSequenceMatchBeginQ76R62309 .
?templateMotifSequenceMatchBeginQ76R62309 faldo:position ?templateMotifSequenceMatchBeginPositionQ76R62304 ;
faldo:reference isoform:Q76R62-1 .
?templateMotifSequenceProfileAlignmentOperationQ76R62310 edam:has_input signature:MF_04075 ;
rdf:type edam:operation_0300 .
?targetMotifMatch311 faldo:location ?targetMotifMatchRegionMatch312 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04075314 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ76R62MF_04075305 .
?targetMotifMatchRegionMatch312 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04075313 .
?targetMotifMatchRegionMatchBeginMF_04075313 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04075306 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04075314 edam:has_input signature:MF_04075 ;
rdf:type edam:operation_0300 .
BIND(1 AS ?thisPositionOn91) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ76R62MF_04075303, 1, (STRLEN(?templateMotifCigarQ76R62MF_04075303) - STRLEN(REPLACE(?templateMotifCigarQ76R62MF_04075303, CONCAT('^(?:-*[^-]){', STR(((119 - ?templateMotifSequenceMatchBeginPositionQ76R62304) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1315) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ76R62MF_04075305, 1, (STRLEN(?targetMotifMatchCigarQ76R62MF_04075305) - STRLEN(REPLACE(?targetMotifMatchCigarQ76R62MF_04075305, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1315), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ76R62MF_04075305, 1, (STRLEN(?targetMotifMatchCigarQ76R62MF_04075305) - STRLEN(REPLACE(?targetMotifMatchCigarQ76R62MF_04075305, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1315), '}'), '')))), '[^-]', ''))) AS ?step2316) .
BIND(((?step2316 + ?targetMotifMatchRegionMatchBeginPositionMF_04075306) - 1) AS ?thisPositionOn92) .
BIND(?this AS ?pfs1t317) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn91))) AS ?pfsb89) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn92))) AS ?pfse90) .
FILTER ((BOUND(?thisPositionOn91) && BOUND(?thisPositionOn92))) .
BIND(URI(CONCAT(STR(?this), '#MF_04075a88')) AS ?annotation88) .
BIND(?this AS ?pfs87) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch322 faldo:location ?templateMotifSequenceMatchRegionQ76R62323 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ76R62325 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ76R62MF_04075318 .
?templateMotifSequenceMatchRegionQ76R62323 faldo:begin ?templateMotifSequenceMatchBeginQ76R62324 .
?templateMotifSequenceMatchBeginQ76R62324 faldo:position ?templateMotifSequenceMatchBeginPositionQ76R62319 ;
faldo:reference isoform:Q76R62-1 .
?templateMotifSequenceProfileAlignmentOperationQ76R62325 edam:has_input signature:MF_04075 ;
rdf:type edam:operation_0300 .
?targetMotifMatch326 faldo:location ?targetMotifMatchRegionMatch327 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04075329 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ76R62MF_04075320 .
?targetMotifMatchRegionMatch327 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04075328 .
?targetMotifMatchRegionMatchBeginMF_04075328 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04075321 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04075329 edam:has_input signature:MF_04075 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ76R62MF_04075318, 1, (STRLEN(?templateMotifCigarQ76R62MF_04075318) - STRLEN(REPLACE(?templateMotifCigarQ76R62MF_04075318, CONCAT('^(?:-*[^-]){', STR(((120 - ?templateMotifSequenceMatchBeginPositionQ76R62319) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1330) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ76R62MF_04075320, 1, (STRLEN(?targetMotifMatchCigarQ76R62MF_04075320) - STRLEN(REPLACE(?targetMotifMatchCigarQ76R62MF_04075320, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1330), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ76R62MF_04075320, 1, (STRLEN(?targetMotifMatchCigarQ76R62MF_04075320) - STRLEN(REPLACE(?targetMotifMatchCigarQ76R62MF_04075320, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1330), '}'), '')))), '[^-]', ''))) AS ?step2331) .
BIND(((?step2331 + ?targetMotifMatchRegionMatchBeginPositionMF_04075321) - 1) AS ?thisPositionOn97) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ76R62MF_04075318, 1, (STRLEN(?templateMotifCigarQ76R62MF_04075318) - STRLEN(REPLACE(?templateMotifCigarQ76R62MF_04075318, CONCAT('^(?:-*[^-]){', STR(((174 - ?templateMotifSequenceMatchBeginPositionQ76R62319) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1332) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ76R62MF_04075320, 1, (STRLEN(?targetMotifMatchCigarQ76R62MF_04075320) - STRLEN(REPLACE(?targetMotifMatchCigarQ76R62MF_04075320, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1332), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ76R62MF_04075320, 1, (STRLEN(?targetMotifMatchCigarQ76R62MF_04075320) - STRLEN(REPLACE(?targetMotifMatchCigarQ76R62MF_04075320, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1332), '}'), '')))), '[^-]', ''))) AS ?step2333) .
BIND(((?step2333 + ?targetMotifMatchRegionMatchBeginPositionMF_04075321) - 1) AS ?thisPositionOn98) .
BIND(?this AS ?pfs1t334) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn97))) AS ?pfsb95) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn98))) AS ?pfse96) .
FILTER ((BOUND(?thisPositionOn97) && BOUND(?thisPositionOn98))) .
BIND(URI(CONCAT(STR(?this), '#MF_04075a94')) AS ?annotation94) .
BIND(?this AS ?pfs93) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch339 faldo:location ?templateMotifSequenceMatchRegionQ76R62340 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ76R62342 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ76R62MF_04075335 .
?templateMotifSequenceMatchRegionQ76R62340 faldo:begin ?templateMotifSequenceMatchBeginQ76R62341 .
?templateMotifSequenceMatchBeginQ76R62341 faldo:position ?templateMotifSequenceMatchBeginPositionQ76R62336 ;
faldo:reference isoform:Q76R62-1 .
?templateMotifSequenceProfileAlignmentOperationQ76R62342 edam:has_input signature:MF_04075 ;
rdf:type edam:operation_0300 .
?targetMotifMatch343 faldo:location ?targetMotifMatchRegionMatch344 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04075346 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ76R62MF_04075337 .
?targetMotifMatchRegionMatch344 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04075345 .
?targetMotifMatchRegionMatchBeginMF_04075345 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04075338 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04075346 edam:has_input signature:MF_04075 ;
rdf:type edam:operation_0300 .
BIND(1 AS ?thisPositionOn103) .
BIND(?thisPositionOn103 AS ?thisPositionOn104) .
BIND(?this AS ?pfs1t347) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn103))) AS ?pfsb101) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn104))) AS ?pfse102) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn103, 1) = 'M')) .
BIND(URI(CONCAT(STR(?this), '#MF_04075a100')) AS ?annotation100) .
BIND(?this AS ?pfs99) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch352 faldo:location ?templateMotifSequenceMatchRegionQ76R62353 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ76R62355 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ76R62MF_04075348 .
?templateMotifSequenceMatchRegionQ76R62353 faldo:begin ?templateMotifSequenceMatchBeginQ76R62354 .
?templateMotifSequenceMatchBeginQ76R62354 faldo:position ?templateMotifSequenceMatchBeginPositionQ76R62349 ;
faldo:reference isoform:Q76R62-1 .
?templateMotifSequenceProfileAlignmentOperationQ76R62355 edam:has_input signature:MF_04075 ;
rdf:type edam:operation_0300 .
?targetMotifMatch356 faldo:location ?targetMotifMatchRegionMatch357 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04075359 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ76R62MF_04075350 .
?targetMotifMatchRegionMatch357 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04075358 .
?targetMotifMatchRegionMatchBeginMF_04075358 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04075351 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04075359 edam:has_input signature:MF_04075 ;
rdf:type edam:operation_0300 .
BIND(1 AS ?thisPositionOn109) .
BIND(?thisPositionOn109 AS ?thisPositionOn110) .
BIND(?this AS ?pfs1t360) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn109))) AS ?pfsb107) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn110))) AS ?pfse108) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn109, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_04075a106')) AS ?annotation106) .
BIND(?this AS ?pfs105) .
}
}
"xsd:string |
