| http://purl.uniprot.org/unirules/MF_04207#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:987145 up:source unirule:MF_04207 .
_:987146 up:source unirule:MF_04207 .
_:987147 up:source unirule:MF_04207 .
_:987148 up:source unirule:MF_04207 .
_:987149 up:source unirule:MF_04207 .
_:987150 up:source unirule:MF_04207 .
_:987151 up:source unirule:MF_04207 .
_:987152 up:source unirule:MF_04207 .
_:987153 up:source unirule:MF_04207 .
_:987154 up:source unirule:MF_04207 .
_:987155 up:source unirule:MF_04207 .
_:987156 up:source unirule:MF_04207 .
_:987157 up:source unirule:MF_04207 .
_:987158 up:source unirule:MF_04207 .
_:987159 up:source unirule:MF_04207 .
_:987160 up:source unirule:MF_04207 .
_:987161 up:source unirule:MF_04207 .
_:987162 up:source unirule:MF_04207 .
_:987163 up:source unirule:MF_04207 .
_:987164 up:source unirule:MF_04207 .
_:987165 up:source unirule:MF_04207 .
_:987166 up:source unirule:MF_04207 .
_:987167 up:source unirule:MF_04207 .
_:987168 up:source unirule:MF_04207 .
_:987169 up:source unirule:MF_04207 .
_:987170 up:source unirule:MF_04207 .
_:987171 up:source unirule:MF_04207 .
_:987172 up:source unirule:MF_04207 .
_:987173 up:source unirule:MF_04207 .
_:987174 up:source unirule:MF_04207 .
_:987175 up:source unirule:MF_04207 .
_:987176 up:source unirule:MF_04207 .
_:987177 up:source unirule:MF_04207 .
_:987178 up:source unirule:MF_04207 .
_:987179 up:source unirule:MF_04207 .
_:987180 up:source unirule:MF_04207 .
_:987181 up:source unirule:MF_04207 .
_:987182 up:source unirule:MF_04207 .
_:987183 up:source unirule:MF_04207 .
_:987184 up:source unirule:MF_04207 .
_:987185 up:source unirule:MF_04207 .
_:987186 up:source unirule:MF_04207 .
_:987187 up:source unirule:MF_04207 .
_:987188 up:source unirule:MF_04207 .
_:987189 up:source unirule:MF_04207 .
_:987190 up:source unirule:MF_04207 .
_:987191 up:source unirule:MF_04207 .
_:987192 up:source unirule:MF_04207 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation8 ,
?annotation9 ,
?annotation12 ,
?annotation13 ;
up:classifiedWith GO:0001681 ,
GO:0016020 ,
GO:0019031 ,
GO:0019064 ,
GO:0020002 ,
GO:0046789 ,
GO:0055036 ,
keyword:1015 ,
keyword:1032 ,
keyword:1043 ,
keyword:1133 ,
keyword:261 ,
keyword:325 ,
keyword:348 ,
keyword:378 ,
keyword:472 ,
keyword:732 ,
keyword:812 ,
keyword:946 ;
up:precursor "true"^^xsd:boolean ;
up:recommendedName ?name0 .
?name0 up:ecName '3.1.1.53' ;
up:fullName 'Hemagglutinin-esterase' ;
up:shortName 'HE protein' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'E3 glycoprotein' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'HE' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Structural protein that makes short spikes at the surface of the virus. Contains receptor binding and receptor-destroying activities. Mediates de-O-acetylation of N-acetyl-4-O-acetylneuraminic acid, which is probably the receptor determinant recognized by the virus on the surface of erythrocytes and susceptible cells. This receptor-destroying activity is important for virus release as it probably helps preventing self-aggregation and ensures the efficient spread of the progeny virus from cell to cell. May serve as a secondary viral attachment protein for initiating infection, the spike protein being the major one. May become a target for both the humoral and the cellular branches of the immune system.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 up:activity ?activity7 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity7 up:catalyticActivity ;
up:enzymeClass .
?annotation8 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer; disulfide-linked. Forms a complex with the M protein in the pre-Golgi. Associates then with S-M complex to form a ternary complex S-M-HE.' .
?annotation9 a up:Subcellular_Location_Annotation ;
rdfs:comment 'In infected cells becomes incorporated into the envelope of virions during virus assembly at the endoplasmic reticulum and cis Golgi. However, some may escape incorporation into virions and subsequently migrate to the cell surface' .
?annotation9li10 up:cellularComponent .
?annotation9li11 up:cellularComponent .
?annotation12 a up:PTM_Annotation ;
rdfs:comment 'N-glycosylated in the host RER.' .
?annotation13 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the influenza type C/coronaviruses hemagglutinin-esterase family.' .
?pfs14 up:annotation ?annotation15 .
?annotation15 faldo:begin ?pfsb16 ;
faldo:end ?pfse17 ;
rdf:type up:Signal_Peptide_Annotation .
?pfsb16 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfse17 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfs20 up:annotation ?annotation21 .
?annotation21 faldo:begin ?pfsb22 ;
faldo:end ?pfse23 ;
rdf:type up:Chain_Annotation ;
rdfs:comment 'Hemagglutinin-esterase' .
?pfsb22 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfse23 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?pfs26 up:annotation ?annotation27 .
?annotation27 faldo:begin ?pfsb28 ;
faldo:end ?pfse29 ;
rdf:type up:Topological_Domain_Annotation ;
rdfs:comment 'Virion surface' .
?pfsb28 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?pfse29 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?pfs32 up:annotation ?annotation33 .
?annotation33 faldo:begin ?pfsb34 ;
faldo:end ?pfse35 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical' .
?pfsb34 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?pfse35 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?pfs38 up:annotation ?annotation39 .
?annotation39 faldo:begin ?pfsb40 ;
faldo:end ?pfse41 ;
rdf:type up:Topological_Domain_Annotation ;
rdfs:comment 'Intravirion' .
?pfsb40 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?pfse41 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?pfs44 up:annotation ?annotation45 .
?annotation45 faldo:begin ?pfsb46 ;
faldo:end ?pfse47 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Esterase domain 1' .
?pfsb46 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?pfse47 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?pfs50 up:annotation ?annotation51 .
?annotation51 faldo:begin ?pfsb52 ;
faldo:end ?pfse53 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Receptor binding' .
?pfsb52 faldo:position ?thisPositionOn54 ;
rdf:type faldo:ExactPosition .
?pfse53 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
?pfs56 up:annotation ?annotation57 .
?annotation57 faldo:begin ?pfsb58 ;
faldo:end ?pfse59 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Esterase domain 2' .
?pfsb58 faldo:position ?thisPositionOn60 ;
rdf:type faldo:ExactPosition .
?pfse59 faldo:position ?thisPositionOn61 ;
rdf:type faldo:ExactPosition .
?pfs62 up:annotation ?annotation63 .
?annotation63 faldo:begin ?pfsb64 ;
faldo:end ?pfse65 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Nucleophile' .
?pfsb64 faldo:position ?thisPositionOn66 ;
rdf:type faldo:ExactPosition .
?pfse65 faldo:position ?thisPositionOn67 ;
rdf:type faldo:ExactPosition .
?pfs68 up:annotation ?annotation69 .
?annotation69 faldo:begin ?pfsb70 ;
faldo:end ?pfse71 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Charge relay system' .
?pfsb70 faldo:position ?thisPositionOn72 ;
rdf:type faldo:ExactPosition .
?pfse71 faldo:position ?thisPositionOn73 ;
rdf:type faldo:ExactPosition .
?pfs74 up:annotation ?annotation75 .
?annotation75 faldo:begin ?pfsb76 ;
faldo:end ?pfse77 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Charge relay system' .
?pfsb76 faldo:position ?thisPositionOn78 ;
rdf:type faldo:ExactPosition .
?pfse77 faldo:position ?thisPositionOn79 ;
rdf:type faldo:ExactPosition .
?pfs80 up:annotation ?annotation81 .
?annotation81 faldo:begin ?pfsb82 ;
faldo:end ?pfse83 ;
rdf:type up:Disulfide_Bond_Annotation .
?pfsb82 faldo:position ?thisPositionOn84 ;
rdf:type faldo:ExactPosition .
?pfse83 faldo:position ?thisPositionOn85 ;
rdf:type faldo:ExactPosition .
?pfs86 up:annotation ?annotation87 .
?annotation87 faldo:begin ?pfsb88 ;
faldo:end ?pfse89 ;
rdf:type up:Disulfide_Bond_Annotation .
?pfsb88 faldo:position ?thisPositionOn90 ;
rdf:type faldo:ExactPosition .
?pfse89 faldo:position ?thisPositionOn91 ;
rdf:type faldo:ExactPosition .
?pfs92 up:annotation ?annotation93 .
?annotation93 faldo:begin ?pfsb94 ;
faldo:end ?pfse95 ;
rdf:type up:Disulfide_Bond_Annotation .
?pfsb94 faldo:position ?thisPositionOn96 ;
rdf:type faldo:ExactPosition .
?pfse95 faldo:position ?thisPositionOn97 ;
rdf:type faldo:ExactPosition .
?pfs98 up:annotation ?annotation99 .
?annotation99 faldo:begin ?pfsb100 ;
faldo:end ?pfse101 ;
rdf:type up:Disulfide_Bond_Annotation .
?pfsb100 faldo:position ?thisPositionOn102 ;
rdf:type faldo:ExactPosition .
?pfse101 faldo:position ?thisPositionOn103 ;
rdf:type faldo:ExactPosition .
?pfs104 up:annotation ?annotation105 .
?annotation105 faldo:begin ?pfsb106 ;
faldo:end ?pfse107 ;
rdf:type up:Disulfide_Bond_Annotation .
?pfsb106 faldo:position ?thisPositionOn108 ;
rdf:type faldo:ExactPosition .
?pfse107 faldo:position ?thisPositionOn109 ;
rdf:type faldo:ExactPosition .
?pfs110 up:annotation ?annotation111 .
?annotation111 faldo:begin ?pfsb112 ;
faldo:end ?pfse113 ;
rdf:type up:Disulfide_Bond_Annotation .
?pfsb112 faldo:position ?thisPositionOn114 ;
rdf:type faldo:ExactPosition .
?pfse113 faldo:position ?thisPositionOn115 ;
rdf:type faldo:ExactPosition .
?pfs116 up:annotation ?annotation117 .
?annotation117 faldo:begin ?pfsb118 ;
faldo:end ?pfse119 ;
rdf:type up:Disulfide_Bond_Annotation ;
rdfs:comment 'Interchain' .
?pfsb118 faldo:position ?thisPositionOn120 ;
rdf:type faldo:ExactPosition .
?pfse119 faldo:position ?thisPositionOn121 ;
rdf:type faldo:ExactPosition .
_:987193 a rdf:Statement ;
up:attribution _:987145 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:987194 a rdf:Statement ;
up:attribution _:987146 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:987195 a rdf:Statement ;
up:attribution _:987147 ;
rdf:subject ?this ;
rdf:predicate up:precursor ;
rdf:object "true"^^xsd:boolean .
_:987196 a rdf:Statement ;
up:attribution _:987148 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:987197 a rdf:Statement ;
up:attribution _:987149 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:987198 a rdf:Statement ;
up:attribution _:987150 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:987199 a rdf:Statement ;
up:attribution _:987151 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:987200 a rdf:Statement ;
up:attribution _:987152 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:987201 a rdf:Statement ;
up:attribution _:987153 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:987202 a rdf:Statement ;
up:attribution _:987154 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:987203 a rdf:Statement ;
up:attribution _:987155 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:987204 a rdf:Statement ;
up:attribution _:987156 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1015 .
_:987205 a rdf:Statement ;
up:attribution _:987157 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:325 .
_:987206 a rdf:Statement ;
up:attribution _:987158 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:348 .
_:987207 a rdf:Statement ;
up:attribution _:987159 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1032 .
_:987208 a rdf:Statement ;
up:attribution _:987160 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1043 .
_:987209 a rdf:Statement ;
up:attribution _:987161 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:987210 a rdf:Statement ;
up:attribution _:987162 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:987211 a rdf:Statement ;
up:attribution _:987163 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:732 .
_:987212 a rdf:Statement ;
up:attribution _:987164 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:812 .
_:987213 a rdf:Statement ;
up:attribution _:987165 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1133 .
_:987214 a rdf:Statement ;
up:attribution _:987166 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:261 .
_:987215 a rdf:Statement ;
up:attribution _:987167 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:946 .
_:987216 a rdf:Statement ;
up:attribution _:987168 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0020002 .
_:987217 a rdf:Statement ;
up:attribution _:987169 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016020 .
_:987218 a rdf:Statement ;
up:attribution _:987170 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019031 .
_:987219 a rdf:Statement ;
up:attribution _:987171 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0055036 .
_:987220 a rdf:Statement ;
up:attribution _:987172 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0046789 .
_:987221 a rdf:Statement ;
up:attribution _:987173 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0001681 .
_:987222 a rdf:Statement ;
up:attribution _:987174 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019064 .
_:987223 a rdf:Statement ;
up:source unirule:MF_04207 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:987224 a rdf:Statement ;
up:attribution _:987175 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:987225 a rdf:Statement ;
up:source unirule:MF_04207 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:987226 a rdf:Statement ;
up:attribution _:987176 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:987227 a rdf:Statement ;
up:source unirule:MF_04207 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:987228 a rdf:Statement ;
up:attribution _:987177 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:987229 a rdf:Statement ;
up:source unirule:MF_04207 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:987230 a rdf:Statement ;
up:attribution _:987178 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:987231 a rdf:Statement ;
up:source unirule:MF_04207 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:987232 a rdf:Statement ;
up:attribution _:987179 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:987233 a rdf:Statement ;
up:source unirule:MF_04207 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:987234 a rdf:Statement ;
up:attribution _:987180 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:987235 a rdf:Statement ;
up:source unirule:MF_04207 ;
rdf:subject ?pfs50 ;
rdf:predicate up:annotation ;
rdf:object ?annotation51 .
_:987236 a rdf:Statement ;
up:attribution _:987181 ;
rdf:subject ?pfs50 ;
rdf:predicate up:annotation ;
rdf:object ?annotation51 .
_:987237 a rdf:Statement ;
up:source unirule:MF_04207 ;
rdf:subject ?pfs56 ;
rdf:predicate up:annotation ;
rdf:object ?annotation57 .
_:987238 a rdf:Statement ;
up:attribution _:987182 ;
rdf:subject ?pfs56 ;
rdf:predicate up:annotation ;
rdf:object ?annotation57 .
_:987239 a rdf:Statement ;
up:source unirule:MF_04207 ;
rdf:subject ?pfs62 ;
rdf:predicate up:annotation ;
rdf:object ?annotation63 .
_:987240 a rdf:Statement ;
up:attribution _:987183 ;
rdf:subject ?pfs62 ;
rdf:predicate up:annotation ;
rdf:object ?annotation63 .
_:987241 a rdf:Statement ;
up:source unirule:MF_04207 ;
rdf:subject ?pfs68 ;
rdf:predicate up:annotation ;
rdf:object ?annotation69 .
_:987242 a rdf:Statement ;
up:attribution _:987184 ;
rdf:subject ?pfs68 ;
rdf:predicate up:annotation ;
rdf:object ?annotation69 .
_:987243 a rdf:Statement ;
up:source unirule:MF_04207 ;
rdf:subject ?pfs74 ;
rdf:predicate up:annotation ;
rdf:object ?annotation75 .
_:987244 a rdf:Statement ;
up:attribution _:987185 ;
rdf:subject ?pfs74 ;
rdf:predicate up:annotation ;
rdf:object ?annotation75 .
_:987245 a rdf:Statement ;
up:source unirule:MF_04207 ;
rdf:subject ?pfs80 ;
rdf:predicate up:annotation ;
rdf:object ?annotation81 .
_:987246 a rdf:Statement ;
up:attribution _:987186 ;
rdf:subject ?pfs80 ;
rdf:predicate up:annotation ;
rdf:object ?annotation81 .
_:987247 a rdf:Statement ;
up:source unirule:MF_04207 ;
rdf:subject ?pfs86 ;
rdf:predicate up:annotation ;
rdf:object ?annotation87 .
_:987248 a rdf:Statement ;
up:attribution _:987187 ;
rdf:subject ?pfs86 ;
rdf:predicate up:annotation ;
rdf:object ?annotation87 .
_:987249 a rdf:Statement ;
up:source unirule:MF_04207 ;
rdf:subject ?pfs92 ;
rdf:predicate up:annotation ;
rdf:object ?annotation93 .
_:987250 a rdf:Statement ;
up:attribution _:987188 ;
rdf:subject ?pfs92 ;
rdf:predicate up:annotation ;
rdf:object ?annotation93 .
_:987251 a rdf:Statement ;
up:source unirule:MF_04207 ;
rdf:subject ?pfs98 ;
rdf:predicate up:annotation ;
rdf:object ?annotation99 .
_:987252 a rdf:Statement ;
up:attribution _:987189 ;
rdf:subject ?pfs98 ;
rdf:predicate up:annotation ;
rdf:object ?annotation99 .
_:987253 a rdf:Statement ;
up:source unirule:MF_04207 ;
rdf:subject ?pfs104 ;
rdf:predicate up:annotation ;
rdf:object ?annotation105 .
_:987254 a rdf:Statement ;
up:attribution _:987190 ;
rdf:subject ?pfs104 ;
rdf:predicate up:annotation ;
rdf:object ?annotation105 .
_:987255 a rdf:Statement ;
up:source unirule:MF_04207 ;
rdf:subject ?pfs110 ;
rdf:predicate up:annotation ;
rdf:object ?annotation111 .
_:987256 a rdf:Statement ;
up:attribution _:987191 ;
rdf:subject ?pfs110 ;
rdf:predicate up:annotation ;
rdf:object ?annotation111 .
_:987257 a rdf:Statement ;
up:source unirule:MF_04207 ;
rdf:subject ?pfs116 ;
rdf:predicate up:annotation ;
rdf:object ?annotation117 .
_:987258 a rdf:Statement ;
up:attribution _:987192 ;
rdf:subject ?pfs116 ;
rdf:predicate up:annotation ;
rdf:object ?annotation117 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_04207
#Rule MF_04207 Created by:? on:2018-04-05 Modified by:Edouard de Castro on:2024-09-02
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_04207 .
?thisOrganism rdfs:subClassOf+ taxon:694002 .
BIND(URI(CONCAT(STR(?this), '#MF_04207a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_04207a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_04207a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_04207a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_04207a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_04207a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_04207a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_04207a12')) AS ?annotation12) .
BIND(URI(CONCAT(STR(?this), '#MF_04207a13')) AS ?annotation13) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch126 faldo:location ?templateMotifSequenceMatchRegionP31614127 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP31614129 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP31614MF_04207122 .
?templateMotifSequenceMatchRegionP31614127 faldo:begin ?templateMotifSequenceMatchBeginP31614128 .
?templateMotifSequenceMatchBeginP31614128 faldo:position ?templateMotifSequenceMatchBeginPositionP31614123 ;
faldo:reference isoform:P31614-1 .
?templateMotifSequenceProfileAlignmentOperationP31614129 edam:has_input signature:MF_04207 ;
rdf:type edam:operation_0300 .
?targetMotifMatch130 faldo:location ?targetMotifMatchRegionMatch131 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04207133 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP31614MF_04207124 .
?targetMotifMatchRegionMatch131 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04207132 .
?targetMotifMatchRegionMatchBeginMF_04207132 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04207125 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04207133 edam:has_input signature:MF_04207 ;
rdf:type edam:operation_0300 .
BIND(1 AS ?thisPositionOn18) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP31614MF_04207122, 1, (STRLEN(?templateMotifCigarP31614MF_04207122) - STRLEN(REPLACE(?templateMotifCigarP31614MF_04207122, CONCAT('^(?:-*[^-]){', STR(((22 - ?templateMotifSequenceMatchBeginPositionP31614123) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1134) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP31614MF_04207124, 1, (STRLEN(?targetMotifMatchCigarP31614MF_04207124) - STRLEN(REPLACE(?targetMotifMatchCigarP31614MF_04207124, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1134), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP31614MF_04207124, 1, (STRLEN(?targetMotifMatchCigarP31614MF_04207124) - STRLEN(REPLACE(?targetMotifMatchCigarP31614MF_04207124, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1134), '}'), '')))), '[^-]', ''))) AS ?step2135) .
BIND(((?step2135 + ?targetMotifMatchRegionMatchBeginPositionMF_04207125) - 1) AS ?thisPositionOn19) .
BIND(?this AS ?pfs1t136) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb16) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse17) .
FILTER ((BOUND(?thisPositionOn18) && BOUND(?thisPositionOn19))) .
BIND(URI(CONCAT(STR(?this), '#MF_04207a15')) AS ?annotation15) .
BIND(?this AS ?pfs14) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch141 faldo:location ?templateMotifSequenceMatchRegionP31614142 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP31614144 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP31614MF_04207137 .
?templateMotifSequenceMatchRegionP31614142 faldo:begin ?templateMotifSequenceMatchBeginP31614143 .
?templateMotifSequenceMatchBeginP31614143 faldo:position ?templateMotifSequenceMatchBeginPositionP31614138 ;
faldo:reference isoform:P31614-1 .
?templateMotifSequenceProfileAlignmentOperationP31614144 edam:has_input signature:MF_04207 ;
rdf:type edam:operation_0300 .
?targetMotifMatch145 faldo:location ?targetMotifMatchRegionMatch146 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04207148 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP31614MF_04207139 .
?targetMotifMatchRegionMatch146 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04207147 .
?targetMotifMatchRegionMatchBeginMF_04207147 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04207140 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04207148 edam:has_input signature:MF_04207 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP31614MF_04207137, 1, (STRLEN(?templateMotifCigarP31614MF_04207137) - STRLEN(REPLACE(?templateMotifCigarP31614MF_04207137, CONCAT('^(?:-*[^-]){', STR(((23 - ?templateMotifSequenceMatchBeginPositionP31614138) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1149) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP31614MF_04207139, 1, (STRLEN(?targetMotifMatchCigarP31614MF_04207139) - STRLEN(REPLACE(?targetMotifMatchCigarP31614MF_04207139, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1149), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP31614MF_04207139, 1, (STRLEN(?targetMotifMatchCigarP31614MF_04207139) - STRLEN(REPLACE(?targetMotifMatchCigarP31614MF_04207139, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1149), '}'), '')))), '[^-]', ''))) AS ?step2150) .
BIND(((?step2150 + ?targetMotifMatchRegionMatchBeginPositionMF_04207140) - 1) AS ?thisPositionOn24) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn25) .
BIND(?this AS ?pfs1t151) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb22) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse23) .
FILTER ((BOUND(?thisPositionOn24) && BOUND(?thisPositionOn25))) .
BIND(URI(CONCAT(STR(?this), '#MF_04207a21')) AS ?annotation21) .
BIND(?this AS ?pfs20) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch156 faldo:location ?templateMotifSequenceMatchRegionP31614157 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP31614159 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP31614MF_04207152 .
?templateMotifSequenceMatchRegionP31614157 faldo:begin ?templateMotifSequenceMatchBeginP31614158 .
?templateMotifSequenceMatchBeginP31614158 faldo:position ?templateMotifSequenceMatchBeginPositionP31614153 ;
faldo:reference isoform:P31614-1 .
?templateMotifSequenceProfileAlignmentOperationP31614159 edam:has_input signature:MF_04207 ;
rdf:type edam:operation_0300 .
?targetMotifMatch160 faldo:location ?targetMotifMatchRegionMatch161 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04207163 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP31614MF_04207154 .
?targetMotifMatchRegionMatch161 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04207162 .
?targetMotifMatchRegionMatchBeginMF_04207162 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04207155 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04207163 edam:has_input signature:MF_04207 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP31614MF_04207152, 1, (STRLEN(?templateMotifCigarP31614MF_04207152) - STRLEN(REPLACE(?templateMotifCigarP31614MF_04207152, CONCAT('^(?:-*[^-]){', STR(((23 - ?templateMotifSequenceMatchBeginPositionP31614153) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1164) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP31614MF_04207154, 1, (STRLEN(?targetMotifMatchCigarP31614MF_04207154) - STRLEN(REPLACE(?targetMotifMatchCigarP31614MF_04207154, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1164), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP31614MF_04207154, 1, (STRLEN(?targetMotifMatchCigarP31614MF_04207154) - STRLEN(REPLACE(?targetMotifMatchCigarP31614MF_04207154, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1164), '}'), '')))), '[^-]', ''))) AS ?step2165) .
BIND(((?step2165 + ?targetMotifMatchRegionMatchBeginPositionMF_04207155) - 1) AS ?thisPositionOn30) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP31614MF_04207152, 1, (STRLEN(?templateMotifCigarP31614MF_04207152) - STRLEN(REPLACE(?templateMotifCigarP31614MF_04207152, CONCAT('^(?:-*[^-]){', STR(((407 - ?templateMotifSequenceMatchBeginPositionP31614153) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1166) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP31614MF_04207154, 1, (STRLEN(?targetMotifMatchCigarP31614MF_04207154) - STRLEN(REPLACE(?targetMotifMatchCigarP31614MF_04207154, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1166), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP31614MF_04207154, 1, (STRLEN(?targetMotifMatchCigarP31614MF_04207154) - STRLEN(REPLACE(?targetMotifMatchCigarP31614MF_04207154, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1166), '}'), '')))), '[^-]', ''))) AS ?step2167) .
BIND(((?step2167 + ?targetMotifMatchRegionMatchBeginPositionMF_04207155) - 1) AS ?thisPositionOn31) .
BIND(?this AS ?pfs1t168) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb28) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse29) .
FILTER ((BOUND(?thisPositionOn30) && BOUND(?thisPositionOn31))) .
BIND(URI(CONCAT(STR(?this), '#MF_04207a27')) AS ?annotation27) .
BIND(?this AS ?pfs26) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch173 faldo:location ?templateMotifSequenceMatchRegionP31614174 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP31614176 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP31614MF_04207169 .
?templateMotifSequenceMatchRegionP31614174 faldo:begin ?templateMotifSequenceMatchBeginP31614175 .
?templateMotifSequenceMatchBeginP31614175 faldo:position ?templateMotifSequenceMatchBeginPositionP31614170 ;
faldo:reference isoform:P31614-1 .
?templateMotifSequenceProfileAlignmentOperationP31614176 edam:has_input signature:MF_04207 ;
rdf:type edam:operation_0300 .
?targetMotifMatch177 faldo:location ?targetMotifMatchRegionMatch178 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04207180 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP31614MF_04207171 .
?targetMotifMatchRegionMatch178 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04207179 .
?targetMotifMatchRegionMatchBeginMF_04207179 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04207172 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04207180 edam:has_input signature:MF_04207 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP31614MF_04207169, 1, (STRLEN(?templateMotifCigarP31614MF_04207169) - STRLEN(REPLACE(?templateMotifCigarP31614MF_04207169, CONCAT('^(?:-*[^-]){', STR(((408 - ?templateMotifSequenceMatchBeginPositionP31614170) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1181) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP31614MF_04207171, 1, (STRLEN(?targetMotifMatchCigarP31614MF_04207171) - STRLEN(REPLACE(?targetMotifMatchCigarP31614MF_04207171, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1181), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP31614MF_04207171, 1, (STRLEN(?targetMotifMatchCigarP31614MF_04207171) - STRLEN(REPLACE(?targetMotifMatchCigarP31614MF_04207171, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1181), '}'), '')))), '[^-]', ''))) AS ?step2182) .
BIND(((?step2182 + ?targetMotifMatchRegionMatchBeginPositionMF_04207172) - 1) AS ?thisPositionOn36) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP31614MF_04207169, 1, (STRLEN(?templateMotifCigarP31614MF_04207169) - STRLEN(REPLACE(?templateMotifCigarP31614MF_04207169, CONCAT('^(?:-*[^-]){', STR(((428 - ?templateMotifSequenceMatchBeginPositionP31614170) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1183) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP31614MF_04207171, 1, (STRLEN(?targetMotifMatchCigarP31614MF_04207171) - STRLEN(REPLACE(?targetMotifMatchCigarP31614MF_04207171, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1183), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP31614MF_04207171, 1, (STRLEN(?targetMotifMatchCigarP31614MF_04207171) - STRLEN(REPLACE(?targetMotifMatchCigarP31614MF_04207171, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1183), '}'), '')))), '[^-]', ''))) AS ?step2184) .
BIND(((?step2184 + ?targetMotifMatchRegionMatchBeginPositionMF_04207172) - 1) AS ?thisPositionOn37) .
BIND(?this AS ?pfs1t185) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfsb34) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfse35) .
FILTER ((BOUND(?thisPositionOn36) && BOUND(?thisPositionOn37))) .
BIND(URI(CONCAT(STR(?this), '#MF_04207a33')) AS ?annotation33) .
BIND(?this AS ?pfs32) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch190 faldo:location ?templateMotifSequenceMatchRegionP31614191 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP31614193 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP31614MF_04207186 .
?templateMotifSequenceMatchRegionP31614191 faldo:begin ?templateMotifSequenceMatchBeginP31614192 .
?templateMotifSequenceMatchBeginP31614192 faldo:position ?templateMotifSequenceMatchBeginPositionP31614187 ;
faldo:reference isoform:P31614-1 .
?templateMotifSequenceProfileAlignmentOperationP31614193 edam:has_input signature:MF_04207 ;
rdf:type edam:operation_0300 .
?targetMotifMatch194 faldo:location ?targetMotifMatchRegionMatch195 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04207197 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP31614MF_04207188 .
?targetMotifMatchRegionMatch195 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04207196 .
?targetMotifMatchRegionMatchBeginMF_04207196 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04207189 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04207197 edam:has_input signature:MF_04207 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP31614MF_04207186, 1, (STRLEN(?templateMotifCigarP31614MF_04207186) - STRLEN(REPLACE(?templateMotifCigarP31614MF_04207186, CONCAT('^(?:-*[^-]){', STR(((429 - ?templateMotifSequenceMatchBeginPositionP31614187) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1198) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP31614MF_04207188, 1, (STRLEN(?targetMotifMatchCigarP31614MF_04207188) - STRLEN(REPLACE(?targetMotifMatchCigarP31614MF_04207188, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1198), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP31614MF_04207188, 1, (STRLEN(?targetMotifMatchCigarP31614MF_04207188) - STRLEN(REPLACE(?targetMotifMatchCigarP31614MF_04207188, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1198), '}'), '')))), '[^-]', ''))) AS ?step2199) .
BIND(((?step2199 + ?targetMotifMatchRegionMatchBeginPositionMF_04207189) - 1) AS ?thisPositionOn42) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn43) .
BIND(?this AS ?pfs1t200) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb40) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse41) .
FILTER ((BOUND(?thisPositionOn42) && BOUND(?thisPositionOn43))) .
BIND(URI(CONCAT(STR(?this), '#MF_04207a39')) AS ?annotation39) .
BIND(?this AS ?pfs38) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch205 faldo:location ?templateMotifSequenceMatchRegionP31614206 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP31614208 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP31614MF_04207201 .
?templateMotifSequenceMatchRegionP31614206 faldo:begin ?templateMotifSequenceMatchBeginP31614207 .
?templateMotifSequenceMatchBeginP31614207 faldo:position ?templateMotifSequenceMatchBeginPositionP31614202 ;
faldo:reference isoform:P31614-1 .
?templateMotifSequenceProfileAlignmentOperationP31614208 edam:has_input signature:MF_04207 ;
rdf:type edam:operation_0300 .
?targetMotifMatch209 faldo:location ?targetMotifMatchRegionMatch210 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04207212 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP31614MF_04207203 .
?targetMotifMatchRegionMatch210 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04207211 .
?targetMotifMatchRegionMatchBeginMF_04207211 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04207204 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04207212 edam:has_input signature:MF_04207 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP31614MF_04207201, 1, (STRLEN(?templateMotifCigarP31614MF_04207201) - STRLEN(REPLACE(?templateMotifCigarP31614MF_04207201, CONCAT('^(?:-*[^-]){', STR(((12 - ?templateMotifSequenceMatchBeginPositionP31614202) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1213) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP31614MF_04207203, 1, (STRLEN(?targetMotifMatchCigarP31614MF_04207203) - STRLEN(REPLACE(?targetMotifMatchCigarP31614MF_04207203, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1213), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP31614MF_04207203, 1, (STRLEN(?targetMotifMatchCigarP31614MF_04207203) - STRLEN(REPLACE(?targetMotifMatchCigarP31614MF_04207203, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1213), '}'), '')))), '[^-]', ''))) AS ?step2214) .
BIND(((?step2214 + ?targetMotifMatchRegionMatchBeginPositionMF_04207204) - 1) AS ?thisPositionOn48) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP31614MF_04207201, 1, (STRLEN(?templateMotifCigarP31614MF_04207201) - STRLEN(REPLACE(?templateMotifCigarP31614MF_04207201, CONCAT('^(?:-*[^-]){', STR(((132 - ?templateMotifSequenceMatchBeginPositionP31614202) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1215) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP31614MF_04207203, 1, (STRLEN(?targetMotifMatchCigarP31614MF_04207203) - STRLEN(REPLACE(?targetMotifMatchCigarP31614MF_04207203, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1215), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP31614MF_04207203, 1, (STRLEN(?targetMotifMatchCigarP31614MF_04207203) - STRLEN(REPLACE(?targetMotifMatchCigarP31614MF_04207203, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1215), '}'), '')))), '[^-]', ''))) AS ?step2216) .
BIND(((?step2216 + ?targetMotifMatchRegionMatchBeginPositionMF_04207204) - 1) AS ?thisPositionOn49) .
BIND(?this AS ?pfs1t217) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfsb46) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfse47) .
FILTER ((BOUND(?thisPositionOn48) && BOUND(?thisPositionOn49))) .
BIND(URI(CONCAT(STR(?this), '#MF_04207a45')) AS ?annotation45) .
BIND(?this AS ?pfs44) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch222 faldo:location ?templateMotifSequenceMatchRegionP31614223 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP31614225 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP31614MF_04207218 .
?templateMotifSequenceMatchRegionP31614223 faldo:begin ?templateMotifSequenceMatchBeginP31614224 .
?templateMotifSequenceMatchBeginP31614224 faldo:position ?templateMotifSequenceMatchBeginPositionP31614219 ;
faldo:reference isoform:P31614-1 .
?templateMotifSequenceProfileAlignmentOperationP31614225 edam:has_input signature:MF_04207 ;
rdf:type edam:operation_0300 .
?targetMotifMatch226 faldo:location ?targetMotifMatchRegionMatch227 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04207229 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP31614MF_04207220 .
?targetMotifMatchRegionMatch227 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04207228 .
?targetMotifMatchRegionMatchBeginMF_04207228 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04207221 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04207229 edam:has_input signature:MF_04207 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP31614MF_04207218, 1, (STRLEN(?templateMotifCigarP31614MF_04207218) - STRLEN(REPLACE(?templateMotifCigarP31614MF_04207218, CONCAT('^(?:-*[^-]){', STR(((133 - ?templateMotifSequenceMatchBeginPositionP31614219) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1230) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP31614MF_04207220, 1, (STRLEN(?targetMotifMatchCigarP31614MF_04207220) - STRLEN(REPLACE(?targetMotifMatchCigarP31614MF_04207220, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1230), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP31614MF_04207220, 1, (STRLEN(?targetMotifMatchCigarP31614MF_04207220) - STRLEN(REPLACE(?targetMotifMatchCigarP31614MF_04207220, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1230), '}'), '')))), '[^-]', ''))) AS ?step2231) .
BIND(((?step2231 + ?targetMotifMatchRegionMatchBeginPositionMF_04207221) - 1) AS ?thisPositionOn54) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP31614MF_04207218, 1, (STRLEN(?templateMotifCigarP31614MF_04207218) - STRLEN(REPLACE(?templateMotifCigarP31614MF_04207218, CONCAT('^(?:-*[^-]){', STR(((281 - ?templateMotifSequenceMatchBeginPositionP31614219) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1232) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP31614MF_04207220, 1, (STRLEN(?targetMotifMatchCigarP31614MF_04207220) - STRLEN(REPLACE(?targetMotifMatchCigarP31614MF_04207220, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1232), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP31614MF_04207220, 1, (STRLEN(?targetMotifMatchCigarP31614MF_04207220) - STRLEN(REPLACE(?targetMotifMatchCigarP31614MF_04207220, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1232), '}'), '')))), '[^-]', ''))) AS ?step2233) .
BIND(((?step2233 + ?targetMotifMatchRegionMatchBeginPositionMF_04207221) - 1) AS ?thisPositionOn55) .
BIND(?this AS ?pfs1t234) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfsb52) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfse53) .
FILTER ((BOUND(?thisPositionOn54) && BOUND(?thisPositionOn55))) .
BIND(URI(CONCAT(STR(?this), '#MF_04207a51')) AS ?annotation51) .
BIND(?this AS ?pfs50) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch239 faldo:location ?templateMotifSequenceMatchRegionP31614240 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP31614242 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP31614MF_04207235 .
?templateMotifSequenceMatchRegionP31614240 faldo:begin ?templateMotifSequenceMatchBeginP31614241 .
?templateMotifSequenceMatchBeginP31614241 faldo:position ?templateMotifSequenceMatchBeginPositionP31614236 ;
faldo:reference isoform:P31614-1 .
?templateMotifSequenceProfileAlignmentOperationP31614242 edam:has_input signature:MF_04207 ;
rdf:type edam:operation_0300 .
?targetMotifMatch243 faldo:location ?targetMotifMatchRegionMatch244 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04207246 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP31614MF_04207237 .
?targetMotifMatchRegionMatch244 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04207245 .
?targetMotifMatchRegionMatchBeginMF_04207245 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04207238 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04207246 edam:has_input signature:MF_04207 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP31614MF_04207235, 1, (STRLEN(?templateMotifCigarP31614MF_04207235) - STRLEN(REPLACE(?templateMotifCigarP31614MF_04207235, CONCAT('^(?:-*[^-]){', STR(((282 - ?templateMotifSequenceMatchBeginPositionP31614236) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1247) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP31614MF_04207237, 1, (STRLEN(?targetMotifMatchCigarP31614MF_04207237) - STRLEN(REPLACE(?targetMotifMatchCigarP31614MF_04207237, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1247), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP31614MF_04207237, 1, (STRLEN(?targetMotifMatchCigarP31614MF_04207237) - STRLEN(REPLACE(?targetMotifMatchCigarP31614MF_04207237, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1247), '}'), '')))), '[^-]', ''))) AS ?step2248) .
BIND(((?step2248 + ?targetMotifMatchRegionMatchBeginPositionMF_04207238) - 1) AS ?thisPositionOn60) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP31614MF_04207235, 1, (STRLEN(?templateMotifCigarP31614MF_04207235) - STRLEN(REPLACE(?templateMotifCigarP31614MF_04207235, CONCAT('^(?:-*[^-]){', STR(((395 - ?templateMotifSequenceMatchBeginPositionP31614236) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1249) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP31614MF_04207237, 1, (STRLEN(?targetMotifMatchCigarP31614MF_04207237) - STRLEN(REPLACE(?targetMotifMatchCigarP31614MF_04207237, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1249), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP31614MF_04207237, 1, (STRLEN(?targetMotifMatchCigarP31614MF_04207237) - STRLEN(REPLACE(?targetMotifMatchCigarP31614MF_04207237, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1249), '}'), '')))), '[^-]', ''))) AS ?step2250) .
BIND(((?step2250 + ?targetMotifMatchRegionMatchBeginPositionMF_04207238) - 1) AS ?thisPositionOn61) .
BIND(?this AS ?pfs1t251) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfsb58) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfse59) .
FILTER ((BOUND(?thisPositionOn60) && BOUND(?thisPositionOn61))) .
BIND(URI(CONCAT(STR(?this), '#MF_04207a57')) AS ?annotation57) .
BIND(?this AS ?pfs56) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch256 faldo:location ?templateMotifSequenceMatchRegionP31614257 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP31614259 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP31614MF_04207252 .
?templateMotifSequenceMatchRegionP31614257 faldo:begin ?templateMotifSequenceMatchBeginP31614258 .
?templateMotifSequenceMatchBeginP31614258 faldo:position ?templateMotifSequenceMatchBeginPositionP31614253 ;
faldo:reference isoform:P31614-1 .
?templateMotifSequenceProfileAlignmentOperationP31614259 edam:has_input signature:MF_04207 ;
rdf:type edam:operation_0300 .
?targetMotifMatch260 faldo:location ?targetMotifMatchRegionMatch261 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04207263 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP31614MF_04207254 .
?targetMotifMatchRegionMatch261 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04207262 .
?targetMotifMatchRegionMatchBeginMF_04207262 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04207255 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04207263 edam:has_input signature:MF_04207 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP31614MF_04207252, 1, (STRLEN(?templateMotifCigarP31614MF_04207252) - STRLEN(REPLACE(?templateMotifCigarP31614MF_04207252, CONCAT('^(?:-*[^-]){', STR(((45 - ?templateMotifSequenceMatchBeginPositionP31614253) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1264) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP31614MF_04207254, 1, (STRLEN(?targetMotifMatchCigarP31614MF_04207254) - STRLEN(REPLACE(?targetMotifMatchCigarP31614MF_04207254, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1264), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP31614MF_04207254, 1, (STRLEN(?targetMotifMatchCigarP31614MF_04207254) - STRLEN(REPLACE(?targetMotifMatchCigarP31614MF_04207254, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1264), '}'), '')))), '[^-]', ''))) AS ?step2265) .
BIND(((?step2265 + ?targetMotifMatchRegionMatchBeginPositionMF_04207255) - 1) AS ?thisPositionOn66) .
BIND(?thisPositionOn66 AS ?thisPositionOn67) .
BIND(?this AS ?pfs1t266) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfsb64) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfse65) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn66, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_04207a63')) AS ?annotation63) .
BIND(?this AS ?pfs62) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch271 faldo:location ?templateMotifSequenceMatchRegionP31614272 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP31614274 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP31614MF_04207267 .
?templateMotifSequenceMatchRegionP31614272 faldo:begin ?templateMotifSequenceMatchBeginP31614273 .
?templateMotifSequenceMatchBeginP31614273 faldo:position ?templateMotifSequenceMatchBeginPositionP31614268 ;
faldo:reference isoform:P31614-1 .
?templateMotifSequenceProfileAlignmentOperationP31614274 edam:has_input signature:MF_04207 ;
rdf:type edam:operation_0300 .
?targetMotifMatch275 faldo:location ?targetMotifMatchRegionMatch276 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04207278 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP31614MF_04207269 .
?targetMotifMatchRegionMatch276 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04207277 .
?targetMotifMatchRegionMatchBeginMF_04207277 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04207270 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04207278 edam:has_input signature:MF_04207 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP31614MF_04207267, 1, (STRLEN(?templateMotifCigarP31614MF_04207267) - STRLEN(REPLACE(?templateMotifCigarP31614MF_04207267, CONCAT('^(?:-*[^-]){', STR(((342 - ?templateMotifSequenceMatchBeginPositionP31614268) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1279) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP31614MF_04207269, 1, (STRLEN(?targetMotifMatchCigarP31614MF_04207269) - STRLEN(REPLACE(?targetMotifMatchCigarP31614MF_04207269, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1279), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP31614MF_04207269, 1, (STRLEN(?targetMotifMatchCigarP31614MF_04207269) - STRLEN(REPLACE(?targetMotifMatchCigarP31614MF_04207269, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1279), '}'), '')))), '[^-]', ''))) AS ?step2280) .
BIND(((?step2280 + ?targetMotifMatchRegionMatchBeginPositionMF_04207270) - 1) AS ?thisPositionOn72) .
BIND(?thisPositionOn72 AS ?thisPositionOn73) .
BIND(?this AS ?pfs1t281) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn72))) AS ?pfsb70) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfse71) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn72, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_04207a69')) AS ?annotation69) .
BIND(?this AS ?pfs68) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch286 faldo:location ?templateMotifSequenceMatchRegionP31614287 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP31614289 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP31614MF_04207282 .
?templateMotifSequenceMatchRegionP31614287 faldo:begin ?templateMotifSequenceMatchBeginP31614288 .
?templateMotifSequenceMatchBeginP31614288 faldo:position ?templateMotifSequenceMatchBeginPositionP31614283 ;
faldo:reference isoform:P31614-1 .
?templateMotifSequenceProfileAlignmentOperationP31614289 edam:has_input signature:MF_04207 ;
rdf:type edam:operation_0300 .
?targetMotifMatch290 faldo:location ?targetMotifMatchRegionMatch291 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04207293 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP31614MF_04207284 .
?targetMotifMatchRegionMatch291 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04207292 .
?targetMotifMatchRegionMatchBeginMF_04207292 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04207285 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04207293 edam:has_input signature:MF_04207 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP31614MF_04207282, 1, (STRLEN(?templateMotifCigarP31614MF_04207282) - STRLEN(REPLACE(?templateMotifCigarP31614MF_04207282, CONCAT('^(?:-*[^-]){', STR(((345 - ?templateMotifSequenceMatchBeginPositionP31614283) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1294) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP31614MF_04207284, 1, (STRLEN(?targetMotifMatchCigarP31614MF_04207284) - STRLEN(REPLACE(?targetMotifMatchCigarP31614MF_04207284, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1294), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP31614MF_04207284, 1, (STRLEN(?targetMotifMatchCigarP31614MF_04207284) - STRLEN(REPLACE(?targetMotifMatchCigarP31614MF_04207284, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1294), '}'), '')))), '[^-]', ''))) AS ?step2295) .
BIND(((?step2295 + ?targetMotifMatchRegionMatchBeginPositionMF_04207285) - 1) AS ?thisPositionOn78) .
BIND(?thisPositionOn78 AS ?thisPositionOn79) .
BIND(?this AS ?pfs1t296) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn78))) AS ?pfsb76) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn79))) AS ?pfse77) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn78, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_04207a75')) AS ?annotation75) .
BIND(?this AS ?pfs74) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch301 faldo:location ?templateMotifSequenceMatchRegionP31614302 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP31614304 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP31614MF_04207297 .
?templateMotifSequenceMatchRegionP31614302 faldo:begin ?templateMotifSequenceMatchBeginP31614303 .
?templateMotifSequenceMatchBeginP31614303 faldo:position ?templateMotifSequenceMatchBeginPositionP31614298 ;
faldo:reference isoform:P31614-1 .
?templateMotifSequenceProfileAlignmentOperationP31614304 edam:has_input signature:MF_04207 ;
rdf:type edam:operation_0300 .
?targetMotifMatch305 faldo:location ?targetMotifMatchRegionMatch306 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04207308 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP31614MF_04207299 .
?targetMotifMatchRegionMatch306 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04207307 .
?targetMotifMatchRegionMatchBeginMF_04207307 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04207300 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04207308 edam:has_input signature:MF_04207 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP31614MF_04207297, 1, (STRLEN(?templateMotifCigarP31614MF_04207297) - STRLEN(REPLACE(?templateMotifCigarP31614MF_04207297, CONCAT('^(?:-*[^-]){', STR(((49 - ?templateMotifSequenceMatchBeginPositionP31614298) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1309) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP31614MF_04207299, 1, (STRLEN(?targetMotifMatchCigarP31614MF_04207299) - STRLEN(REPLACE(?targetMotifMatchCigarP31614MF_04207299, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1309), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP31614MF_04207299, 1, (STRLEN(?targetMotifMatchCigarP31614MF_04207299) - STRLEN(REPLACE(?targetMotifMatchCigarP31614MF_04207299, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1309), '}'), '')))), '[^-]', ''))) AS ?step2310) .
BIND(((?step2310 + ?targetMotifMatchRegionMatchBeginPositionMF_04207300) - 1) AS ?thisPositionOn84) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP31614MF_04207297, 1, (STRLEN(?templateMotifCigarP31614MF_04207297) - STRLEN(REPLACE(?templateMotifCigarP31614MF_04207297, CONCAT('^(?:-*[^-]){', STR(((70 - ?templateMotifSequenceMatchBeginPositionP31614298) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1311) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP31614MF_04207299, 1, (STRLEN(?targetMotifMatchCigarP31614MF_04207299) - STRLEN(REPLACE(?targetMotifMatchCigarP31614MF_04207299, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1311), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP31614MF_04207299, 1, (STRLEN(?targetMotifMatchCigarP31614MF_04207299) - STRLEN(REPLACE(?targetMotifMatchCigarP31614MF_04207299, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1311), '}'), '')))), '[^-]', ''))) AS ?step2312) .
BIND(((?step2312 + ?targetMotifMatchRegionMatchBeginPositionMF_04207300) - 1) AS ?thisPositionOn85) .
BIND(?this AS ?pfs1t313) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn84))) AS ?pfsb82) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn85))) AS ?pfse83) .
FILTER (REGEX('C[ARNDCQEGHILKMFPSTWYVBZJUOX]*C', SUBSTR(?thisSequenceValue, ?thisPositionOn84, (?thisPositionOn85 - ?thisPositionOn84)))) .
BIND(URI(CONCAT(STR(?this), '#MF_04207a81')) AS ?annotation81) .
BIND(?this AS ?pfs80) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch318 faldo:location ?templateMotifSequenceMatchRegionP31614319 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP31614321 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP31614MF_04207314 .
?templateMotifSequenceMatchRegionP31614319 faldo:begin ?templateMotifSequenceMatchBeginP31614320 .
?templateMotifSequenceMatchBeginP31614320 faldo:position ?templateMotifSequenceMatchBeginPositionP31614315 ;
faldo:reference isoform:P31614-1 .
?templateMotifSequenceProfileAlignmentOperationP31614321 edam:has_input signature:MF_04207 ;
rdf:type edam:operation_0300 .
?targetMotifMatch322 faldo:location ?targetMotifMatchRegionMatch323 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04207325 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP31614MF_04207316 .
?targetMotifMatchRegionMatch323 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04207324 .
?targetMotifMatchRegionMatchBeginMF_04207324 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04207317 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04207325 edam:has_input signature:MF_04207 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP31614MF_04207314, 1, (STRLEN(?templateMotifCigarP31614MF_04207314) - STRLEN(REPLACE(?templateMotifCigarP31614MF_04207314, CONCAT('^(?:-*[^-]){', STR(((118 - ?templateMotifSequenceMatchBeginPositionP31614315) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1326) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP31614MF_04207316, 1, (STRLEN(?targetMotifMatchCigarP31614MF_04207316) - STRLEN(REPLACE(?targetMotifMatchCigarP31614MF_04207316, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1326), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP31614MF_04207316, 1, (STRLEN(?targetMotifMatchCigarP31614MF_04207316) - STRLEN(REPLACE(?targetMotifMatchCigarP31614MF_04207316, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1326), '}'), '')))), '[^-]', ''))) AS ?step2327) .
BIND(((?step2327 + ?targetMotifMatchRegionMatchBeginPositionMF_04207317) - 1) AS ?thisPositionOn90) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP31614MF_04207314, 1, (STRLEN(?templateMotifCigarP31614MF_04207314) - STRLEN(REPLACE(?templateMotifCigarP31614MF_04207314, CONCAT('^(?:-*[^-]){', STR(((167 - ?templateMotifSequenceMatchBeginPositionP31614315) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1328) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP31614MF_04207316, 1, (STRLEN(?targetMotifMatchCigarP31614MF_04207316) - STRLEN(REPLACE(?targetMotifMatchCigarP31614MF_04207316, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1328), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP31614MF_04207316, 1, (STRLEN(?targetMotifMatchCigarP31614MF_04207316) - STRLEN(REPLACE(?targetMotifMatchCigarP31614MF_04207316, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1328), '}'), '')))), '[^-]', ''))) AS ?step2329) .
BIND(((?step2329 + ?targetMotifMatchRegionMatchBeginPositionMF_04207317) - 1) AS ?thisPositionOn91) .
BIND(?this AS ?pfs1t330) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn90))) AS ?pfsb88) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn91))) AS ?pfse89) .
FILTER (REGEX('C[ARNDCQEGHILKMFPSTWYVBZJUOX]*C', SUBSTR(?thisSequenceValue, ?thisPositionOn90, (?thisPositionOn91 - ?thisPositionOn90)))) .
BIND(URI(CONCAT(STR(?this), '#MF_04207a87')) AS ?annotation87) .
BIND(?this AS ?pfs86) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch335 faldo:location ?templateMotifSequenceMatchRegionP31614336 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP31614338 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP31614MF_04207331 .
?templateMotifSequenceMatchRegionP31614336 faldo:begin ?templateMotifSequenceMatchBeginP31614337 .
?templateMotifSequenceMatchBeginP31614337 faldo:position ?templateMotifSequenceMatchBeginPositionP31614332 ;
faldo:reference isoform:P31614-1 .
?templateMotifSequenceProfileAlignmentOperationP31614338 edam:has_input signature:MF_04207 ;
rdf:type edam:operation_0300 .
?targetMotifMatch339 faldo:location ?targetMotifMatchRegionMatch340 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04207342 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP31614MF_04207333 .
?targetMotifMatchRegionMatch340 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04207341 .
?targetMotifMatchRegionMatchBeginMF_04207341 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04207334 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04207342 edam:has_input signature:MF_04207 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP31614MF_04207331, 1, (STRLEN(?templateMotifCigarP31614MF_04207331) - STRLEN(REPLACE(?templateMotifCigarP31614MF_04207331, CONCAT('^(?:-*[^-]){', STR(((202 - ?templateMotifSequenceMatchBeginPositionP31614332) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1343) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP31614MF_04207333, 1, (STRLEN(?targetMotifMatchCigarP31614MF_04207333) - STRLEN(REPLACE(?targetMotifMatchCigarP31614MF_04207333, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1343), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP31614MF_04207333, 1, (STRLEN(?targetMotifMatchCigarP31614MF_04207333) - STRLEN(REPLACE(?targetMotifMatchCigarP31614MF_04207333, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1343), '}'), '')))), '[^-]', ''))) AS ?step2344) .
BIND(((?step2344 + ?targetMotifMatchRegionMatchBeginPositionMF_04207334) - 1) AS ?thisPositionOn96) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP31614MF_04207331, 1, (STRLEN(?templateMotifCigarP31614MF_04207331) - STRLEN(REPLACE(?templateMotifCigarP31614MF_04207331, CONCAT('^(?:-*[^-]){', STR(((291 - ?templateMotifSequenceMatchBeginPositionP31614332) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1345) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP31614MF_04207333, 1, (STRLEN(?targetMotifMatchCigarP31614MF_04207333) - STRLEN(REPLACE(?targetMotifMatchCigarP31614MF_04207333, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1345), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP31614MF_04207333, 1, (STRLEN(?targetMotifMatchCigarP31614MF_04207333) - STRLEN(REPLACE(?targetMotifMatchCigarP31614MF_04207333, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1345), '}'), '')))), '[^-]', ''))) AS ?step2346) .
BIND(((?step2346 + ?targetMotifMatchRegionMatchBeginPositionMF_04207334) - 1) AS ?thisPositionOn97) .
BIND(?this AS ?pfs1t347) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn96))) AS ?pfsb94) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn97))) AS ?pfse95) .
FILTER (REGEX('C[ARNDCQEGHILKMFPSTWYVBZJUOX]*C', SUBSTR(?thisSequenceValue, ?thisPositionOn96, (?thisPositionOn97 - ?thisPositionOn96)))) .
BIND(URI(CONCAT(STR(?this), '#MF_04207a93')) AS ?annotation93) .
BIND(?this AS ?pfs92) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch352 faldo:location ?templateMotifSequenceMatchRegionP31614353 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP31614355 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP31614MF_04207348 .
?templateMotifSequenceMatchRegionP31614353 faldo:begin ?templateMotifSequenceMatchBeginP31614354 .
?templateMotifSequenceMatchBeginP31614354 faldo:position ?templateMotifSequenceMatchBeginPositionP31614349 ;
faldo:reference isoform:P31614-1 .
?templateMotifSequenceProfileAlignmentOperationP31614355 edam:has_input signature:MF_04207 ;
rdf:type edam:operation_0300 .
?targetMotifMatch356 faldo:location ?targetMotifMatchRegionMatch357 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04207359 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP31614MF_04207350 .
?targetMotifMatchRegionMatch357 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04207358 .
?targetMotifMatchRegionMatchBeginMF_04207358 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04207351 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04207359 edam:has_input signature:MF_04207 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP31614MF_04207348, 1, (STRLEN(?templateMotifCigarP31614MF_04207348) - STRLEN(REPLACE(?templateMotifCigarP31614MF_04207348, CONCAT('^(?:-*[^-]){', STR(((210 - ?templateMotifSequenceMatchBeginPositionP31614349) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1360) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP31614MF_04207350, 1, (STRLEN(?targetMotifMatchCigarP31614MF_04207350) - STRLEN(REPLACE(?targetMotifMatchCigarP31614MF_04207350, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1360), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP31614MF_04207350, 1, (STRLEN(?targetMotifMatchCigarP31614MF_04207350) - STRLEN(REPLACE(?targetMotifMatchCigarP31614MF_04207350, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1360), '}'), '')))), '[^-]', ''))) AS ?step2361) .
BIND(((?step2361 + ?targetMotifMatchRegionMatchBeginPositionMF_04207351) - 1) AS ?thisPositionOn102) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP31614MF_04207348, 1, (STRLEN(?templateMotifCigarP31614MF_04207348) - STRLEN(REPLACE(?templateMotifCigarP31614MF_04207348, CONCAT('^(?:-*[^-]){', STR(((264 - ?templateMotifSequenceMatchBeginPositionP31614349) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1362) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP31614MF_04207350, 1, (STRLEN(?targetMotifMatchCigarP31614MF_04207350) - STRLEN(REPLACE(?targetMotifMatchCigarP31614MF_04207350, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1362), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP31614MF_04207350, 1, (STRLEN(?targetMotifMatchCigarP31614MF_04207350) - STRLEN(REPLACE(?targetMotifMatchCigarP31614MF_04207350, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1362), '}'), '')))), '[^-]', ''))) AS ?step2363) .
BIND(((?step2363 + ?targetMotifMatchRegionMatchBeginPositionMF_04207351) - 1) AS ?thisPositionOn103) .
BIND(?this AS ?pfs1t364) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn102))) AS ?pfsb100) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn103))) AS ?pfse101) .
FILTER (REGEX('C[ARNDCQEGHILKMFPSTWYVBZJUOX]*C', SUBSTR(?thisSequenceValue, ?thisPositionOn102, (?thisPositionOn103 - ?thisPositionOn102)))) .
BIND(URI(CONCAT(STR(?this), '#MF_04207a99')) AS ?annotation99) .
BIND(?this AS ?pfs98) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch369 faldo:location ?templateMotifSequenceMatchRegionP31614370 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP31614372 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP31614MF_04207365 .
?templateMotifSequenceMatchRegionP31614370 faldo:begin ?templateMotifSequenceMatchBeginP31614371 .
?templateMotifSequenceMatchBeginP31614371 faldo:position ?templateMotifSequenceMatchBeginPositionP31614366 ;
faldo:reference isoform:P31614-1 .
?templateMotifSequenceProfileAlignmentOperationP31614372 edam:has_input signature:MF_04207 ;
rdf:type edam:operation_0300 .
?targetMotifMatch373 faldo:location ?targetMotifMatchRegionMatch374 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04207376 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP31614MF_04207367 .
?targetMotifMatchRegionMatch374 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04207375 .
?targetMotifMatchRegionMatchBeginMF_04207375 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04207368 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04207376 edam:has_input signature:MF_04207 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP31614MF_04207365, 1, (STRLEN(?templateMotifCigarP31614MF_04207365) - STRLEN(REPLACE(?templateMotifCigarP31614MF_04207365, CONCAT('^(?:-*[^-]){', STR(((322 - ?templateMotifSequenceMatchBeginPositionP31614366) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1377) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP31614MF_04207367, 1, (STRLEN(?targetMotifMatchCigarP31614MF_04207367) - STRLEN(REPLACE(?targetMotifMatchCigarP31614MF_04207367, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1377), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP31614MF_04207367, 1, (STRLEN(?targetMotifMatchCigarP31614MF_04207367) - STRLEN(REPLACE(?targetMotifMatchCigarP31614MF_04207367, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1377), '}'), '')))), '[^-]', ''))) AS ?step2378) .
BIND(((?step2378 + ?targetMotifMatchRegionMatchBeginPositionMF_04207368) - 1) AS ?thisPositionOn108) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP31614MF_04207365, 1, (STRLEN(?templateMotifCigarP31614MF_04207365) - STRLEN(REPLACE(?templateMotifCigarP31614MF_04207365, CONCAT('^(?:-*[^-]){', STR(((327 - ?templateMotifSequenceMatchBeginPositionP31614366) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1379) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP31614MF_04207367, 1, (STRLEN(?targetMotifMatchCigarP31614MF_04207367) - STRLEN(REPLACE(?targetMotifMatchCigarP31614MF_04207367, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1379), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP31614MF_04207367, 1, (STRLEN(?targetMotifMatchCigarP31614MF_04207367) - STRLEN(REPLACE(?targetMotifMatchCigarP31614MF_04207367, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1379), '}'), '')))), '[^-]', ''))) AS ?step2380) .
BIND(((?step2380 + ?targetMotifMatchRegionMatchBeginPositionMF_04207368) - 1) AS ?thisPositionOn109) .
BIND(?this AS ?pfs1t381) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn108))) AS ?pfsb106) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn109))) AS ?pfse107) .
FILTER (REGEX('C[ARNDCQEGHILKMFPSTWYVBZJUOX]*C', SUBSTR(?thisSequenceValue, ?thisPositionOn108, (?thisPositionOn109 - ?thisPositionOn108)))) .
BIND(URI(CONCAT(STR(?this), '#MF_04207a105')) AS ?annotation105) .
BIND(?this AS ?pfs104) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch386 faldo:location ?templateMotifSequenceMatchRegionP31614387 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP31614389 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP31614MF_04207382 .
?templateMotifSequenceMatchRegionP31614387 faldo:begin ?templateMotifSequenceMatchBeginP31614388 .
?templateMotifSequenceMatchBeginP31614388 faldo:position ?templateMotifSequenceMatchBeginPositionP31614383 ;
faldo:reference isoform:P31614-1 .
?templateMotifSequenceProfileAlignmentOperationP31614389 edam:has_input signature:MF_04207 ;
rdf:type edam:operation_0300 .
?targetMotifMatch390 faldo:location ?targetMotifMatchRegionMatch391 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04207393 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP31614MF_04207384 .
?targetMotifMatchRegionMatch391 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04207392 .
?targetMotifMatchRegionMatchBeginMF_04207392 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04207385 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04207393 edam:has_input signature:MF_04207 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP31614MF_04207382, 1, (STRLEN(?templateMotifCigarP31614MF_04207382) - STRLEN(REPLACE(?templateMotifCigarP31614MF_04207382, CONCAT('^(?:-*[^-]){', STR(((363 - ?templateMotifSequenceMatchBeginPositionP31614383) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1394) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP31614MF_04207384, 1, (STRLEN(?targetMotifMatchCigarP31614MF_04207384) - STRLEN(REPLACE(?targetMotifMatchCigarP31614MF_04207384, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1394), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP31614MF_04207384, 1, (STRLEN(?targetMotifMatchCigarP31614MF_04207384) - STRLEN(REPLACE(?targetMotifMatchCigarP31614MF_04207384, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1394), '}'), '')))), '[^-]', ''))) AS ?step2395) .
BIND(((?step2395 + ?targetMotifMatchRegionMatchBeginPositionMF_04207385) - 1) AS ?thisPositionOn114) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP31614MF_04207382, 1, (STRLEN(?templateMotifCigarP31614MF_04207382) - STRLEN(REPLACE(?templateMotifCigarP31614MF_04207382, CONCAT('^(?:-*[^-]){', STR(((387 - ?templateMotifSequenceMatchBeginPositionP31614383) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1396) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP31614MF_04207384, 1, (STRLEN(?targetMotifMatchCigarP31614MF_04207384) - STRLEN(REPLACE(?targetMotifMatchCigarP31614MF_04207384, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1396), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP31614MF_04207384, 1, (STRLEN(?targetMotifMatchCigarP31614MF_04207384) - STRLEN(REPLACE(?targetMotifMatchCigarP31614MF_04207384, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1396), '}'), '')))), '[^-]', ''))) AS ?step2397) .
BIND(((?step2397 + ?targetMotifMatchRegionMatchBeginPositionMF_04207385) - 1) AS ?thisPositionOn115) .
BIND(?this AS ?pfs1t398) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn114))) AS ?pfsb112) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn115))) AS ?pfse113) .
FILTER (REGEX('C[ARNDCQEGHILKMFPSTWYVBZJUOX]*C', SUBSTR(?thisSequenceValue, ?thisPositionOn114, (?thisPositionOn115 - ?thisPositionOn114)))) .
BIND(URI(CONCAT(STR(?this), '#MF_04207a111')) AS ?annotation111) .
BIND(?this AS ?pfs110) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch403 faldo:location ?templateMotifSequenceMatchRegionP31614404 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP31614406 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP31614MF_04207399 .
?templateMotifSequenceMatchRegionP31614404 faldo:begin ?templateMotifSequenceMatchBeginP31614405 .
?templateMotifSequenceMatchBeginP31614405 faldo:position ?templateMotifSequenceMatchBeginPositionP31614400 ;
faldo:reference isoform:P31614-1 .
?templateMotifSequenceProfileAlignmentOperationP31614406 edam:has_input signature:MF_04207 ;
rdf:type edam:operation_0300 .
?targetMotifMatch407 faldo:location ?targetMotifMatchRegionMatch408 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04207410 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP31614MF_04207401 .
?targetMotifMatchRegionMatch408 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04207409 .
?targetMotifMatchRegionMatchBeginMF_04207409 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04207402 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04207410 edam:has_input signature:MF_04207 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP31614MF_04207399, 1, (STRLEN(?templateMotifCigarP31614MF_04207399) - STRLEN(REPLACE(?templateMotifCigarP31614MF_04207399, CONCAT('^(?:-*[^-]){', STR(((400 - ?templateMotifSequenceMatchBeginPositionP31614400) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1411) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP31614MF_04207401, 1, (STRLEN(?targetMotifMatchCigarP31614MF_04207401) - STRLEN(REPLACE(?targetMotifMatchCigarP31614MF_04207401, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1411), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP31614MF_04207401, 1, (STRLEN(?targetMotifMatchCigarP31614MF_04207401) - STRLEN(REPLACE(?targetMotifMatchCigarP31614MF_04207401, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1411), '}'), '')))), '[^-]', ''))) AS ?step2412) .
BIND(((?step2412 + ?targetMotifMatchRegionMatchBeginPositionMF_04207402) - 1) AS ?thisPositionOn120) .
BIND(?thisPositionOn120 AS ?thisPositionOn121) .
BIND(?this AS ?pfs1t413) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn120))) AS ?pfsb118) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn121))) AS ?pfse119) .
FILTER (REGEX('C[ARNDCQEGHILKMFPSTWYVBZJUOX]*C', SUBSTR(?thisSequenceValue, ?thisPositionOn120, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_04207a117')) AS ?annotation117) .
BIND(?this AS ?pfs116) .
}
}
"xsd:string |
