| http://purl.uniprot.org/unirules/MF_00183#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:74112 up:source unirule:MF_00183 .
_:74113 up:source unirule:MF_00183 .
_:74114 up:source unirule:MF_00183 .
_:74115 up:source unirule:MF_00183 .
_:74116 up:source unirule:MF_00183 .
_:74117 up:source unirule:MF_00183 .
_:74118 up:source unirule:MF_00183 .
_:74119 up:source unirule:MF_00183 .
_:74120 up:source unirule:MF_00183 .
_:74121 up:source unirule:MF_00183 .
_:74122 up:source unirule:MF_00183 .
_:74123 up:source unirule:MF_00183 .
_:74124 up:source unirule:MF_00183 .
_:74125 up:source unirule:MF_00183 .
_:74126 up:source unirule:MF_00183 .
_:74127 up:source unirule:MF_00183 .
_:74128 up:source unirule:MF_00183 .
_:74129 up:source unirule:MF_00183 .
_:74130 up:source unirule:MF_00183 .
_:74131 up:source unirule:MF_00183 .
_:74132 up:source unirule:MF_00183 .
_:74133 up:source unirule:MF_00183 .
_:74134 up:source unirule:MF_00183 .
_:74135 up:source unirule:MF_00183 .
_:74136 up:source unirule:MF_00183 .
_:74137 up:source unirule:MF_00183 .
_:74138 up:source unirule:MF_00183 .
_:74139 up:source unirule:MF_00183 .
_:74140 up:source unirule:MF_00183 .
_:74141 up:source unirule:MF_00183 .
_:74142 up:source unirule:MF_00183 .
_:74143 up:source unirule:MF_00183 .
_:74144 up:source unirule:MF_00183 .
_:74145 up:source unirule:MF_00183 .
_:74146 up:source unirule:MF_00183 .
_:74147 up:source unirule:MF_00183 .
_:74148 up:source unirule:MF_00183 .
_:74149 up:source unirule:MF_00183 .
_:74150 up:source unirule:MF_00183 .
?this up:alternativeName ?name1 ,
?name2 ;
up:annotation ?annotation4 ,
?annotation5 ,
?annotation7 ,
?annotation8 ,
?annotation9 ;
up:classifiedWith GO:0019288 ,
GO:0030604 ,
keyword:414 ,
keyword:460 ,
keyword:464 ,
keyword:479 ,
keyword:521 ,
keyword:560 ;
up:recommendedName ?name0 .
?name0 up:ecName '1.1.1.267' ;
up:fullName '1-deoxy-D-xylulose 5-phosphate reductoisomerase' ;
up:shortName 'DXP reductoisomerase' ;
rdf:type up:Structured_Name .
?name1 up:fullName '1-deoxyxylulose-5-phosphate reductoisomerase' ;
rdf:type up:Structured_Name .
?name2 up:fullName '2-C-methyl-D-erythritol 4-phosphate synthase' ;
rdf:type up:Structured_Name .
?gene3 skos:prefLabel 'dxr' .
?annotation4 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the NADPH-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP).' .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity ;
up:enzymeClass .
?annotation7 up:cofactor chebi:18420 ,
chebi:29035 ;
rdf:type up:Cofactor_Annotation .
?annotation8 a up:Pathway_Annotation ;
rdfs:comment 'Isoprenoid biosynthesis; isopentenyl diphosphate biosynthesis via DXP pathway; isopentenyl diphosphate from 1-deoxy-D-xylulose 5-phosphate: step 1/6.' .
?annotation9 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the DXR family.' .
?pfs11 up:annotation ?annotation12 .
?annotation12 faldo:begin ?pfsb13 ;
faldo:end ?pfse14 ;
up:ligand ?ligand15 ;
rdf:type up:Binding_Site_Annotation .
?pfsb13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfse14 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?ligand15 rdfs:subClassOf chebi:57783 .
?pfs18 up:annotation ?annotation19 .
?annotation19 faldo:begin ?pfsb20 ;
faldo:end ?pfse21 ;
up:ligand ?ligand22 ;
rdf:type up:Binding_Site_Annotation .
?pfsb20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfse21 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?ligand22 rdfs:subClassOf chebi:57783 .
?pfs25 up:annotation ?annotation26 .
?annotation26 faldo:begin ?pfsb27 ;
faldo:end ?pfse28 ;
up:ligand ?ligand29 ;
rdf:type up:Binding_Site_Annotation .
?pfsb27 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?pfse28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?ligand29 rdfs:subClassOf chebi:57783 .
?pfs32 up:annotation ?annotation33 .
?annotation33 faldo:begin ?pfsb34 ;
faldo:end ?pfse35 ;
up:ligand ?ligand36 ;
rdf:type up:Binding_Site_Annotation .
?pfsb34 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?pfse35 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?ligand36 rdfs:subClassOf chebi:57783 .
?pfs39 up:annotation ?annotation40 .
?annotation40 faldo:begin ?pfsb41 ;
faldo:end ?pfse42 ;
up:ligand ?ligand43 ;
rdf:type up:Binding_Site_Annotation .
?pfsb41 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?pfse42 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?ligand43 rdfs:subClassOf chebi:57783 .
?pfs46 up:annotation ?annotation47 .
?annotation47 faldo:begin ?pfsb48 ;
faldo:end ?pfse49 ;
up:ligand ?ligand50 ;
rdf:type up:Binding_Site_Annotation .
?pfsb48 faldo:position ?thisPositionOn51 ;
rdf:type faldo:ExactPosition .
?pfse49 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?ligand50 rdfs:subClassOf chebi:57783 .
?pfs53 up:annotation ?annotation54 .
?annotation54 faldo:begin ?pfsb55 ;
faldo:end ?pfse56 ;
up:ligand ?ligand57 ;
rdf:type up:Binding_Site_Annotation .
?pfsb55 faldo:position ?thisPositionOn58 ;
rdf:type faldo:ExactPosition .
?pfse56 faldo:position ?thisPositionOn59 ;
rdf:type faldo:ExactPosition .
?ligand57 rdfs:subClassOf chebi:57783 .
?pfs60 up:annotation ?annotation61 .
?annotation61 faldo:begin ?pfsb62 ;
faldo:end ?pfse63 ;
up:ligand ?ligand64 ;
rdf:type up:Binding_Site_Annotation .
?pfsb62 faldo:position ?thisPositionOn65 ;
rdf:type faldo:ExactPosition .
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rdf:type faldo:ExactPosition .
?ligand64 rdfs:subClassOf chebi:57783 .
?pfs67 up:annotation ?annotation68 .
?annotation68 faldo:begin ?pfsb69 ;
faldo:end ?pfse70 ;
up:ligand ?ligand71 ;
rdf:type up:Binding_Site_Annotation .
?pfsb69 faldo:position ?thisPositionOn72 ;
rdf:type faldo:ExactPosition .
?pfse70 faldo:position ?thisPositionOn73 ;
rdf:type faldo:ExactPosition .
?ligand71 rdfs:subClassOf chebi:57792 .
?pfs74 up:annotation ?annotation75 .
?annotation75 faldo:begin ?pfsb76 ;
faldo:end ?pfse77 ;
up:ligand ?ligand78 ;
rdf:type up:Binding_Site_Annotation .
?pfsb76 faldo:position ?thisPositionOn79 ;
rdf:type faldo:ExactPosition .
?pfse77 faldo:position ?thisPositionOn80 ;
rdf:type faldo:ExactPosition .
?ligand78 rdfs:subClassOf chebi:57783 .
?pfs81 up:annotation ?annotation82 .
?annotation82 faldo:begin ?pfsb83 ;
faldo:end ?pfse84 ;
up:ligand ?ligand85 ;
rdf:type up:Binding_Site_Annotation .
?pfsb83 faldo:position ?thisPositionOn86 ;
rdf:type faldo:ExactPosition .
?pfse84 faldo:position ?thisPositionOn87 ;
rdf:type faldo:ExactPosition .
?ligand85 rdfs:subClassOf chebi:57792 .
?pfs88 up:annotation ?annotation89 .
?annotation89 faldo:begin ?pfsb90 ;
faldo:end ?pfse91 ;
up:ligand ?ligand92 ;
rdf:type up:Binding_Site_Annotation .
?pfsb90 faldo:position ?thisPositionOn93 ;
rdf:type faldo:ExactPosition .
?pfse91 faldo:position ?thisPositionOn94 ;
rdf:type faldo:ExactPosition .
?ligand92 rdfs:subClassOf chebi:57792 .
?pfs95 up:annotation ?annotation96 .
?annotation96 faldo:begin ?pfsb97 ;
faldo:end ?pfse98 ;
up:ligand ?ligand99 ;
rdf:type up:Binding_Site_Annotation .
?pfsb97 faldo:position ?thisPositionOn100 ;
rdf:type faldo:ExactPosition .
?pfse98 faldo:position ?thisPositionOn101 ;
rdf:type faldo:ExactPosition .
?ligand99 rdfs:subClassOf chebi:57792 .
?pfs102 up:annotation ?annotation103 .
?annotation103 faldo:begin ?pfsb104 ;
faldo:end ?pfse105 ;
up:ligand ?ligand106 ;
rdf:type up:Binding_Site_Annotation .
?pfsb104 faldo:position ?thisPositionOn107 ;
rdf:type faldo:ExactPosition .
?pfse105 faldo:position ?thisPositionOn108 ;
rdf:type faldo:ExactPosition .
?ligand106 rdfs:subClassOf chebi:57792 .
?pfs109 up:annotation ?annotation110 .
?annotation110 faldo:begin ?pfsb111 ;
faldo:end ?pfse112 ;
up:ligand ?ligand113 ;
rdf:type up:Binding_Site_Annotation .
?pfsb111 faldo:position ?thisPositionOn114 ;
rdf:type faldo:ExactPosition .
?pfse112 faldo:position ?thisPositionOn115 ;
rdf:type faldo:ExactPosition .
?ligand113 rdfs:subClassOf chebi:57783 .
?pfs116 up:annotation ?annotation117 .
?annotation117 faldo:begin ?pfsb118 ;
faldo:end ?pfse119 ;
up:ligand ?ligand120 ;
rdf:type up:Binding_Site_Annotation .
?pfsb118 faldo:position ?thisPositionOn121 ;
rdf:type faldo:ExactPosition .
?pfse119 faldo:position ?thisPositionOn122 ;
rdf:type faldo:ExactPosition .
?ligand120 rdfs:subClassOf chebi:57792 .
?pfs123 up:annotation ?annotation124 .
?annotation124 faldo:begin ?pfsb125 ;
faldo:end ?pfse126 ;
up:ligand ?ligand127 ;
rdf:type up:Binding_Site_Annotation .
?pfsb125 faldo:position ?thisPositionOn128 ;
rdf:type faldo:ExactPosition .
?pfse126 faldo:position ?thisPositionOn129 ;
rdf:type faldo:ExactPosition .
?ligand127 rdfs:subClassOf chebi:57792 .
?pfs130 up:annotation ?annotation131 .
?annotation131 faldo:begin ?pfsb132 ;
faldo:end ?pfse133 ;
up:ligand ?ligand134 ;
rdf:type up:Binding_Site_Annotation .
?pfsb132 faldo:position ?thisPositionOn135 ;
rdf:type faldo:ExactPosition .
?pfse133 faldo:position ?thisPositionOn136 ;
rdf:type faldo:ExactPosition .
?ligand134 rdfs:subClassOf chebi:57792 .
?pfs137 up:annotation ?annotation138 .
?annotation138 faldo:begin ?pfsb139 ;
faldo:end ?pfse140 ;
up:ligand ?ligand141 ;
rdf:type up:Binding_Site_Annotation .
?pfsb139 faldo:position ?thisPositionOn142 ;
rdf:type faldo:ExactPosition .
?pfse140 faldo:position ?thisPositionOn143 ;
rdf:type faldo:ExactPosition .
?ligand141 rdfs:subClassOf chebi:57792 .
?pfs144 up:annotation ?annotation145 ,
?annotation151 ,
?annotation157 .
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faldo:end ?pfse147 ;
up:ligand ?ligand148 ;
rdf:type up:Binding_Site_Annotation .
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rdf:type faldo:ExactPosition .
?pfse147 faldo:position ?thisPositionOn150 ;
rdf:type faldo:ExactPosition .
?ligand148 rdfs:subClassOf chebi:29035 .
?annotation151 faldo:begin ?pfsb152 ;
faldo:end ?pfse153 ;
up:ligand ?ligand154 ;
rdf:type up:Binding_Site_Annotation .
?pfsb152 faldo:position ?thisPositionOn155 ;
rdf:type faldo:ExactPosition .
?pfse153 faldo:position ?thisPositionOn156 ;
rdf:type faldo:ExactPosition .
?ligand154 rdfs:subClassOf chebi:29035 .
?annotation157 faldo:begin ?pfsb158 ;
faldo:end ?pfse159 ;
up:ligand ?ligand160 ;
rdf:type up:Binding_Site_Annotation .
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rdf:type faldo:ExactPosition .
?pfse159 faldo:position ?thisPositionOn162 ;
rdf:type faldo:ExactPosition .
?ligand160 rdfs:subClassOf chebi:29035 .
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up:attribution _:74112 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
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rdf:subject ?this ;
rdf:predicate up:alternativeName ;
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rdf:subject ?this ;
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rdf:subject ?gene3 ;
rdf:predicate up:encodedBy ;
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rdf:subject ?this ;
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rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0030604 .
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rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019288 .
_:74168 a rdf:Statement ;
up:source unirule:MF_00183 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
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rdf:subject ?pfs11 ;
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rdf:predicate up:annotation ;
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rdf:predicate up:annotation ;
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}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00183
#Rule MF_00183 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-02
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00183 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_00183a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00183a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00183a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_00183a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00183a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00183a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_00183a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_00183a9')) AS ?annotation9) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch167 faldo:location ?templateMotifSequenceMatchRegionP45568168 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP45568170 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP45568MF_00183163 .
?templateMotifSequenceMatchRegionP45568168 faldo:begin ?templateMotifSequenceMatchBeginP45568169 .
?templateMotifSequenceMatchBeginP45568169 faldo:position ?templateMotifSequenceMatchBeginPositionP45568164 ;
faldo:reference isoform:P45568-1 .
?templateMotifSequenceProfileAlignmentOperationP45568170 edam:has_input signature:MF_00183 ;
rdf:type edam:operation_0300 .
?targetMotifMatch171 faldo:location ?targetMotifMatchRegionMatch172 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00183174 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP45568MF_00183165 .
?targetMotifMatchRegionMatch172 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00183173 .
?targetMotifMatchRegionMatchBeginMF_00183173 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00183166 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00183174 edam:has_input signature:MF_00183 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP45568MF_00183163, 1, (STRLEN(?templateMotifCigarP45568MF_00183163) - STRLEN(REPLACE(?templateMotifCigarP45568MF_00183163, CONCAT('^(?:-*[^-]){', STR(((10 - ?templateMotifSequenceMatchBeginPositionP45568164) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1175) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP45568MF_00183165, 1, (STRLEN(?targetMotifMatchCigarP45568MF_00183165) - STRLEN(REPLACE(?targetMotifMatchCigarP45568MF_00183165, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1175), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP45568MF_00183165, 1, (STRLEN(?targetMotifMatchCigarP45568MF_00183165) - STRLEN(REPLACE(?targetMotifMatchCigarP45568MF_00183165, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1175), '}'), '')))), '[^-]', ''))) AS ?step2176) .
BIND(((?step2176 + ?targetMotifMatchRegionMatchBeginPositionMF_00183166) - 1) AS ?thisPositionOn16) .
BIND(?thisPositionOn16 AS ?thisPositionOn17) .
BIND(?this AS ?pfs1t177) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb13) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse14) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn16, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_00183a12')) AS ?annotation12) .
BIND(?this AS ?pfs11) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch182 faldo:location ?templateMotifSequenceMatchRegionP45568183 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP45568185 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP45568MF_00183178 .
?templateMotifSequenceMatchRegionP45568183 faldo:begin ?templateMotifSequenceMatchBeginP45568184 .
?templateMotifSequenceMatchBeginP45568184 faldo:position ?templateMotifSequenceMatchBeginPositionP45568179 ;
faldo:reference isoform:P45568-1 .
?templateMotifSequenceProfileAlignmentOperationP45568185 edam:has_input signature:MF_00183 ;
rdf:type edam:operation_0300 .
?targetMotifMatch186 faldo:location ?targetMotifMatchRegionMatch187 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00183189 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP45568MF_00183180 .
?targetMotifMatchRegionMatch187 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00183188 .
?targetMotifMatchRegionMatchBeginMF_00183188 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00183181 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00183189 edam:has_input signature:MF_00183 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP45568MF_00183178, 1, (STRLEN(?templateMotifCigarP45568MF_00183178) - STRLEN(REPLACE(?templateMotifCigarP45568MF_00183178, CONCAT('^(?:-*[^-]){', STR(((11 - ?templateMotifSequenceMatchBeginPositionP45568179) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1190) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP45568MF_00183180, 1, (STRLEN(?targetMotifMatchCigarP45568MF_00183180) - STRLEN(REPLACE(?targetMotifMatchCigarP45568MF_00183180, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1190), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP45568MF_00183180, 1, (STRLEN(?targetMotifMatchCigarP45568MF_00183180) - STRLEN(REPLACE(?targetMotifMatchCigarP45568MF_00183180, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1190), '}'), '')))), '[^-]', ''))) AS ?step2191) .
BIND(((?step2191 + ?targetMotifMatchRegionMatchBeginPositionMF_00183181) - 1) AS ?thisPositionOn23) .
BIND(?thisPositionOn23 AS ?thisPositionOn24) .
BIND(?this AS ?pfs1t192) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb20) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse21) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn23, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_00183a19')) AS ?annotation19) .
BIND(?this AS ?pfs18) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch197 faldo:location ?templateMotifSequenceMatchRegionP45568198 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP45568200 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP45568MF_00183193 .
?templateMotifSequenceMatchRegionP45568198 faldo:begin ?templateMotifSequenceMatchBeginP45568199 .
?templateMotifSequenceMatchBeginP45568199 faldo:position ?templateMotifSequenceMatchBeginPositionP45568194 ;
faldo:reference isoform:P45568-1 .
?templateMotifSequenceProfileAlignmentOperationP45568200 edam:has_input signature:MF_00183 ;
rdf:type edam:operation_0300 .
?targetMotifMatch201 faldo:location ?targetMotifMatchRegionMatch202 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00183204 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP45568MF_00183195 .
?targetMotifMatchRegionMatch202 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00183203 .
?targetMotifMatchRegionMatchBeginMF_00183203 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00183196 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00183204 edam:has_input signature:MF_00183 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP45568MF_00183193, 1, (STRLEN(?templateMotifCigarP45568MF_00183193) - STRLEN(REPLACE(?templateMotifCigarP45568MF_00183193, CONCAT('^(?:-*[^-]){', STR(((12 - ?templateMotifSequenceMatchBeginPositionP45568194) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1205) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP45568MF_00183195, 1, (STRLEN(?targetMotifMatchCigarP45568MF_00183195) - STRLEN(REPLACE(?targetMotifMatchCigarP45568MF_00183195, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1205), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP45568MF_00183195, 1, (STRLEN(?targetMotifMatchCigarP45568MF_00183195) - STRLEN(REPLACE(?targetMotifMatchCigarP45568MF_00183195, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1205), '}'), '')))), '[^-]', ''))) AS ?step2206) .
BIND(((?step2206 + ?targetMotifMatchRegionMatchBeginPositionMF_00183196) - 1) AS ?thisPositionOn30) .
BIND(?thisPositionOn30 AS ?thisPositionOn31) .
BIND(?this AS ?pfs1t207) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb27) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse28) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn30, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_00183a26')) AS ?annotation26) .
BIND(?this AS ?pfs25) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch212 faldo:location ?templateMotifSequenceMatchRegionP45568213 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP45568215 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP45568MF_00183208 .
?templateMotifSequenceMatchRegionP45568213 faldo:begin ?templateMotifSequenceMatchBeginP45568214 .
?templateMotifSequenceMatchBeginP45568214 faldo:position ?templateMotifSequenceMatchBeginPositionP45568209 ;
faldo:reference isoform:P45568-1 .
?templateMotifSequenceProfileAlignmentOperationP45568215 edam:has_input signature:MF_00183 ;
rdf:type edam:operation_0300 .
?targetMotifMatch216 faldo:location ?targetMotifMatchRegionMatch217 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00183219 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP45568MF_00183210 .
?targetMotifMatchRegionMatch217 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00183218 .
?targetMotifMatchRegionMatchBeginMF_00183218 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00183211 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00183219 edam:has_input signature:MF_00183 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP45568MF_00183208, 1, (STRLEN(?templateMotifCigarP45568MF_00183208) - STRLEN(REPLACE(?templateMotifCigarP45568MF_00183208, CONCAT('^(?:-*[^-]){', STR(((13 - ?templateMotifSequenceMatchBeginPositionP45568209) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1220) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP45568MF_00183210, 1, (STRLEN(?targetMotifMatchCigarP45568MF_00183210) - STRLEN(REPLACE(?targetMotifMatchCigarP45568MF_00183210, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1220), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP45568MF_00183210, 1, (STRLEN(?targetMotifMatchCigarP45568MF_00183210) - STRLEN(REPLACE(?targetMotifMatchCigarP45568MF_00183210, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1220), '}'), '')))), '[^-]', ''))) AS ?step2221) .
BIND(((?step2221 + ?targetMotifMatchRegionMatchBeginPositionMF_00183211) - 1) AS ?thisPositionOn37) .
BIND(?thisPositionOn37 AS ?thisPositionOn38) .
BIND(?this AS ?pfs1t222) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfsb34) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfse35) .
FILTER (REGEX('[IV]', SUBSTR(?thisSequenceValue, ?thisPositionOn37, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00183a33')) AS ?annotation33) .
BIND(?this AS ?pfs32) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch227 faldo:location ?templateMotifSequenceMatchRegionP45568228 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP45568230 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP45568MF_00183223 .
?templateMotifSequenceMatchRegionP45568228 faldo:begin ?templateMotifSequenceMatchBeginP45568229 .
?templateMotifSequenceMatchBeginP45568229 faldo:position ?templateMotifSequenceMatchBeginPositionP45568224 ;
faldo:reference isoform:P45568-1 .
?templateMotifSequenceProfileAlignmentOperationP45568230 edam:has_input signature:MF_00183 ;
rdf:type edam:operation_0300 .
?targetMotifMatch231 faldo:location ?targetMotifMatchRegionMatch232 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00183234 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP45568MF_00183225 .
?targetMotifMatchRegionMatch232 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00183233 .
?targetMotifMatchRegionMatchBeginMF_00183233 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00183226 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00183234 edam:has_input signature:MF_00183 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP45568MF_00183223, 1, (STRLEN(?templateMotifCigarP45568MF_00183223) - STRLEN(REPLACE(?templateMotifCigarP45568MF_00183223, CONCAT('^(?:-*[^-]){', STR(((36 - ?templateMotifSequenceMatchBeginPositionP45568224) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1235) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP45568MF_00183225, 1, (STRLEN(?targetMotifMatchCigarP45568MF_00183225) - STRLEN(REPLACE(?targetMotifMatchCigarP45568MF_00183225, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1235), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP45568MF_00183225, 1, (STRLEN(?targetMotifMatchCigarP45568MF_00183225) - STRLEN(REPLACE(?targetMotifMatchCigarP45568MF_00183225, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1235), '}'), '')))), '[^-]', ''))) AS ?step2236) .
BIND(((?step2236 + ?targetMotifMatchRegionMatchBeginPositionMF_00183226) - 1) AS ?thisPositionOn44) .
BIND(?thisPositionOn44 AS ?thisPositionOn45) .
BIND(?this AS ?pfs1t237) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfsb41) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfse42) .
FILTER (REGEX('[GA]', SUBSTR(?thisSequenceValue, ?thisPositionOn44, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00183a40')) AS ?annotation40) .
BIND(?this AS ?pfs39) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch242 faldo:location ?templateMotifSequenceMatchRegionP45568243 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP45568245 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP45568MF_00183238 .
?templateMotifSequenceMatchRegionP45568243 faldo:begin ?templateMotifSequenceMatchBeginP45568244 .
?templateMotifSequenceMatchBeginP45568244 faldo:position ?templateMotifSequenceMatchBeginPositionP45568239 ;
faldo:reference isoform:P45568-1 .
?templateMotifSequenceProfileAlignmentOperationP45568245 edam:has_input signature:MF_00183 ;
rdf:type edam:operation_0300 .
?targetMotifMatch246 faldo:location ?targetMotifMatchRegionMatch247 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00183249 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP45568MF_00183240 .
?targetMotifMatchRegionMatch247 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00183248 .
?targetMotifMatchRegionMatchBeginMF_00183248 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00183241 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00183249 edam:has_input signature:MF_00183 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP45568MF_00183238, 1, (STRLEN(?templateMotifCigarP45568MF_00183238) - STRLEN(REPLACE(?templateMotifCigarP45568MF_00183238, CONCAT('^(?:-*[^-]){', STR(((37 - ?templateMotifSequenceMatchBeginPositionP45568239) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1250) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP45568MF_00183240, 1, (STRLEN(?targetMotifMatchCigarP45568MF_00183240) - STRLEN(REPLACE(?targetMotifMatchCigarP45568MF_00183240, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1250), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP45568MF_00183240, 1, (STRLEN(?targetMotifMatchCigarP45568MF_00183240) - STRLEN(REPLACE(?targetMotifMatchCigarP45568MF_00183240, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1250), '}'), '')))), '[^-]', ''))) AS ?step2251) .
BIND(((?step2251 + ?targetMotifMatchRegionMatchBeginPositionMF_00183241) - 1) AS ?thisPositionOn51) .
BIND(?thisPositionOn51 AS ?thisPositionOn52) .
BIND(?this AS ?pfs1t252) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfsb48) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfse49) .
FILTER (REGEX('[KR]', SUBSTR(?thisSequenceValue, ?thisPositionOn51, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00183a47')) AS ?annotation47) .
BIND(?this AS ?pfs46) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch257 faldo:location ?templateMotifSequenceMatchRegionP45568258 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP45568260 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP45568MF_00183253 .
?templateMotifSequenceMatchRegionP45568258 faldo:begin ?templateMotifSequenceMatchBeginP45568259 .
?templateMotifSequenceMatchBeginP45568259 faldo:position ?templateMotifSequenceMatchBeginPositionP45568254 ;
faldo:reference isoform:P45568-1 .
?templateMotifSequenceProfileAlignmentOperationP45568260 edam:has_input signature:MF_00183 ;
rdf:type edam:operation_0300 .
?targetMotifMatch261 faldo:location ?targetMotifMatchRegionMatch262 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00183264 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP45568MF_00183255 .
?targetMotifMatchRegionMatch262 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00183263 .
?targetMotifMatchRegionMatchBeginMF_00183263 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00183256 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00183264 edam:has_input signature:MF_00183 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP45568MF_00183253, 1, (STRLEN(?templateMotifCigarP45568MF_00183253) - STRLEN(REPLACE(?templateMotifCigarP45568MF_00183253, CONCAT('^(?:-*[^-]){', STR(((38 - ?templateMotifSequenceMatchBeginPositionP45568254) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1265) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP45568MF_00183255, 1, (STRLEN(?targetMotifMatchCigarP45568MF_00183255) - STRLEN(REPLACE(?targetMotifMatchCigarP45568MF_00183255, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1265), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP45568MF_00183255, 1, (STRLEN(?targetMotifMatchCigarP45568MF_00183255) - STRLEN(REPLACE(?targetMotifMatchCigarP45568MF_00183255, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1265), '}'), '')))), '[^-]', ''))) AS ?step2266) .
BIND(((?step2266 + ?targetMotifMatchRegionMatchBeginPositionMF_00183256) - 1) AS ?thisPositionOn58) .
BIND(?thisPositionOn58 AS ?thisPositionOn59) .
BIND(?this AS ?pfs1t267) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfsb55) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfse56) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn58, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_00183a54')) AS ?annotation54) .
BIND(?this AS ?pfs53) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch272 faldo:location ?templateMotifSequenceMatchRegionP45568273 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP45568275 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP45568MF_00183268 .
?templateMotifSequenceMatchRegionP45568273 faldo:begin ?templateMotifSequenceMatchBeginP45568274 .
?templateMotifSequenceMatchBeginP45568274 faldo:position ?templateMotifSequenceMatchBeginPositionP45568269 ;
faldo:reference isoform:P45568-1 .
?templateMotifSequenceProfileAlignmentOperationP45568275 edam:has_input signature:MF_00183 ;
rdf:type edam:operation_0300 .
?targetMotifMatch276 faldo:location ?targetMotifMatchRegionMatch277 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00183279 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP45568MF_00183270 .
?targetMotifMatchRegionMatch277 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00183278 .
?targetMotifMatchRegionMatchBeginMF_00183278 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00183271 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00183279 edam:has_input signature:MF_00183 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP45568MF_00183268, 1, (STRLEN(?templateMotifCigarP45568MF_00183268) - STRLEN(REPLACE(?templateMotifCigarP45568MF_00183268, CONCAT('^(?:-*[^-]){', STR(((124 - ?templateMotifSequenceMatchBeginPositionP45568269) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1280) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP45568MF_00183270, 1, (STRLEN(?targetMotifMatchCigarP45568MF_00183270) - STRLEN(REPLACE(?targetMotifMatchCigarP45568MF_00183270, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1280), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP45568MF_00183270, 1, (STRLEN(?targetMotifMatchCigarP45568MF_00183270) - STRLEN(REPLACE(?targetMotifMatchCigarP45568MF_00183270, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1280), '}'), '')))), '[^-]', ''))) AS ?step2281) .
BIND(((?step2281 + ?targetMotifMatchRegionMatchBeginPositionMF_00183271) - 1) AS ?thisPositionOn65) .
BIND(?thisPositionOn65 AS ?thisPositionOn66) .
BIND(?this AS ?pfs1t282) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn65))) AS ?pfsb62) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfse63) .
FILTER (REGEX('[NQ]', SUBSTR(?thisSequenceValue, ?thisPositionOn65, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00183a61')) AS ?annotation61) .
BIND(?this AS ?pfs60) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch287 faldo:location ?templateMotifSequenceMatchRegionP45568288 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP45568290 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP45568MF_00183283 .
?templateMotifSequenceMatchRegionP45568288 faldo:begin ?templateMotifSequenceMatchBeginP45568289 .
?templateMotifSequenceMatchBeginP45568289 faldo:position ?templateMotifSequenceMatchBeginPositionP45568284 ;
faldo:reference isoform:P45568-1 .
?templateMotifSequenceProfileAlignmentOperationP45568290 edam:has_input signature:MF_00183 ;
rdf:type edam:operation_0300 .
?targetMotifMatch291 faldo:location ?targetMotifMatchRegionMatch292 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00183294 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP45568MF_00183285 .
?targetMotifMatchRegionMatch292 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00183293 .
?targetMotifMatchRegionMatchBeginMF_00183293 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00183286 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00183294 edam:has_input signature:MF_00183 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP45568MF_00183283, 1, (STRLEN(?templateMotifCigarP45568MF_00183283) - STRLEN(REPLACE(?templateMotifCigarP45568MF_00183283, CONCAT('^(?:-*[^-]){', STR(((125 - ?templateMotifSequenceMatchBeginPositionP45568284) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1295) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP45568MF_00183285, 1, (STRLEN(?targetMotifMatchCigarP45568MF_00183285) - STRLEN(REPLACE(?targetMotifMatchCigarP45568MF_00183285, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1295), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP45568MF_00183285, 1, (STRLEN(?targetMotifMatchCigarP45568MF_00183285) - STRLEN(REPLACE(?targetMotifMatchCigarP45568MF_00183285, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1295), '}'), '')))), '[^-]', ''))) AS ?step2296) .
BIND(((?step2296 + ?targetMotifMatchRegionMatchBeginPositionMF_00183286) - 1) AS ?thisPositionOn72) .
BIND(?thisPositionOn72 AS ?thisPositionOn73) .
BIND(?this AS ?pfs1t297) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn72))) AS ?pfsb69) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfse70) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn72, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_00183a68')) AS ?annotation68) .
BIND(?this AS ?pfs67) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch302 faldo:location ?templateMotifSequenceMatchRegionP45568303 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP45568305 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP45568MF_00183298 .
?templateMotifSequenceMatchRegionP45568303 faldo:begin ?templateMotifSequenceMatchBeginP45568304 .
?templateMotifSequenceMatchBeginP45568304 faldo:position ?templateMotifSequenceMatchBeginPositionP45568299 ;
faldo:reference isoform:P45568-1 .
?templateMotifSequenceProfileAlignmentOperationP45568305 edam:has_input signature:MF_00183 ;
rdf:type edam:operation_0300 .
?targetMotifMatch306 faldo:location ?targetMotifMatchRegionMatch307 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00183309 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP45568MF_00183300 .
?targetMotifMatchRegionMatch307 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00183308 .
?targetMotifMatchRegionMatchBeginMF_00183308 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00183301 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00183309 edam:has_input signature:MF_00183 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP45568MF_00183298, 1, (STRLEN(?templateMotifCigarP45568MF_00183298) - STRLEN(REPLACE(?templateMotifCigarP45568MF_00183298, CONCAT('^(?:-*[^-]){', STR(((126 - ?templateMotifSequenceMatchBeginPositionP45568299) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1310) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP45568MF_00183300, 1, (STRLEN(?targetMotifMatchCigarP45568MF_00183300) - STRLEN(REPLACE(?targetMotifMatchCigarP45568MF_00183300, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1310), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP45568MF_00183300, 1, (STRLEN(?targetMotifMatchCigarP45568MF_00183300) - STRLEN(REPLACE(?targetMotifMatchCigarP45568MF_00183300, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1310), '}'), '')))), '[^-]', ''))) AS ?step2311) .
BIND(((?step2311 + ?targetMotifMatchRegionMatchBeginPositionMF_00183301) - 1) AS ?thisPositionOn79) .
BIND(?thisPositionOn79 AS ?thisPositionOn80) .
BIND(?this AS ?pfs1t312) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn79))) AS ?pfsb76) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn80))) AS ?pfse77) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn79, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_00183a75')) AS ?annotation75) .
BIND(?this AS ?pfs74) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch317 faldo:location ?templateMotifSequenceMatchRegionP45568318 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP45568320 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP45568MF_00183313 .
?templateMotifSequenceMatchRegionP45568318 faldo:begin ?templateMotifSequenceMatchBeginP45568319 .
?templateMotifSequenceMatchBeginP45568319 faldo:position ?templateMotifSequenceMatchBeginPositionP45568314 ;
faldo:reference isoform:P45568-1 .
?templateMotifSequenceProfileAlignmentOperationP45568320 edam:has_input signature:MF_00183 ;
rdf:type edam:operation_0300 .
?targetMotifMatch321 faldo:location ?targetMotifMatchRegionMatch322 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00183324 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP45568MF_00183315 .
?targetMotifMatchRegionMatch322 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00183323 .
?targetMotifMatchRegionMatchBeginMF_00183323 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00183316 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00183324 edam:has_input signature:MF_00183 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP45568MF_00183313, 1, (STRLEN(?templateMotifCigarP45568MF_00183313) - STRLEN(REPLACE(?templateMotifCigarP45568MF_00183313, CONCAT('^(?:-*[^-]){', STR(((151 - ?templateMotifSequenceMatchBeginPositionP45568314) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1325) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP45568MF_00183315, 1, (STRLEN(?targetMotifMatchCigarP45568MF_00183315) - STRLEN(REPLACE(?targetMotifMatchCigarP45568MF_00183315, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1325), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP45568MF_00183315, 1, (STRLEN(?targetMotifMatchCigarP45568MF_00183315) - STRLEN(REPLACE(?targetMotifMatchCigarP45568MF_00183315, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1325), '}'), '')))), '[^-]', ''))) AS ?step2326) .
BIND(((?step2326 + ?targetMotifMatchRegionMatchBeginPositionMF_00183316) - 1) AS ?thisPositionOn86) .
BIND(?thisPositionOn86 AS ?thisPositionOn87) .
BIND(?this AS ?pfs1t327) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn86))) AS ?pfsb83) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn87))) AS ?pfse84) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn86, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_00183a82')) AS ?annotation82) .
BIND(?this AS ?pfs81) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch332 faldo:location ?templateMotifSequenceMatchRegionP45568333 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP45568335 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP45568MF_00183328 .
?templateMotifSequenceMatchRegionP45568333 faldo:begin ?templateMotifSequenceMatchBeginP45568334 .
?templateMotifSequenceMatchBeginP45568334 faldo:position ?templateMotifSequenceMatchBeginPositionP45568329 ;
faldo:reference isoform:P45568-1 .
?templateMotifSequenceProfileAlignmentOperationP45568335 edam:has_input signature:MF_00183 ;
rdf:type edam:operation_0300 .
?targetMotifMatch336 faldo:location ?targetMotifMatchRegionMatch337 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00183339 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP45568MF_00183330 .
?targetMotifMatchRegionMatch337 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00183338 .
?targetMotifMatchRegionMatchBeginMF_00183338 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00183331 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00183339 edam:has_input signature:MF_00183 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP45568MF_00183328, 1, (STRLEN(?templateMotifCigarP45568MF_00183328) - STRLEN(REPLACE(?templateMotifCigarP45568MF_00183328, CONCAT('^(?:-*[^-]){', STR(((152 - ?templateMotifSequenceMatchBeginPositionP45568329) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1340) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP45568MF_00183330, 1, (STRLEN(?targetMotifMatchCigarP45568MF_00183330) - STRLEN(REPLACE(?targetMotifMatchCigarP45568MF_00183330, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1340), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP45568MF_00183330, 1, (STRLEN(?targetMotifMatchCigarP45568MF_00183330) - STRLEN(REPLACE(?targetMotifMatchCigarP45568MF_00183330, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1340), '}'), '')))), '[^-]', ''))) AS ?step2341) .
BIND(((?step2341 + ?targetMotifMatchRegionMatchBeginPositionMF_00183331) - 1) AS ?thisPositionOn93) .
BIND(?thisPositionOn93 AS ?thisPositionOn94) .
BIND(?this AS ?pfs1t342) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn93))) AS ?pfsb90) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn94))) AS ?pfse91) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn93, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_00183a89')) AS ?annotation89) .
BIND(?this AS ?pfs88) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch347 faldo:location ?templateMotifSequenceMatchRegionP45568348 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP45568350 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP45568MF_00183343 .
?templateMotifSequenceMatchRegionP45568348 faldo:begin ?templateMotifSequenceMatchBeginP45568349 .
?templateMotifSequenceMatchBeginP45568349 faldo:position ?templateMotifSequenceMatchBeginPositionP45568344 ;
faldo:reference isoform:P45568-1 .
?templateMotifSequenceProfileAlignmentOperationP45568350 edam:has_input signature:MF_00183 ;
rdf:type edam:operation_0300 .
?targetMotifMatch351 faldo:location ?targetMotifMatchRegionMatch352 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00183354 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP45568MF_00183345 .
?targetMotifMatchRegionMatch352 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00183353 .
?targetMotifMatchRegionMatchBeginMF_00183353 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00183346 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00183354 edam:has_input signature:MF_00183 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP45568MF_00183343, 1, (STRLEN(?templateMotifCigarP45568MF_00183343) - STRLEN(REPLACE(?templateMotifCigarP45568MF_00183343, CONCAT('^(?:-*[^-]){', STR(((186 - ?templateMotifSequenceMatchBeginPositionP45568344) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1355) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP45568MF_00183345, 1, (STRLEN(?targetMotifMatchCigarP45568MF_00183345) - STRLEN(REPLACE(?targetMotifMatchCigarP45568MF_00183345, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1355), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP45568MF_00183345, 1, (STRLEN(?targetMotifMatchCigarP45568MF_00183345) - STRLEN(REPLACE(?targetMotifMatchCigarP45568MF_00183345, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1355), '}'), '')))), '[^-]', ''))) AS ?step2356) .
BIND(((?step2356 + ?targetMotifMatchRegionMatchBeginPositionMF_00183346) - 1) AS ?thisPositionOn100) .
BIND(?thisPositionOn100 AS ?thisPositionOn101) .
BIND(?this AS ?pfs1t357) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn100))) AS ?pfsb97) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn101))) AS ?pfse98) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn100, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_00183a96')) AS ?annotation96) .
BIND(?this AS ?pfs95) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch362 faldo:location ?templateMotifSequenceMatchRegionP45568363 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP45568365 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP45568MF_00183358 .
?templateMotifSequenceMatchRegionP45568363 faldo:begin ?templateMotifSequenceMatchBeginP45568364 .
?templateMotifSequenceMatchBeginP45568364 faldo:position ?templateMotifSequenceMatchBeginPositionP45568359 ;
faldo:reference isoform:P45568-1 .
?templateMotifSequenceProfileAlignmentOperationP45568365 edam:has_input signature:MF_00183 ;
rdf:type edam:operation_0300 .
?targetMotifMatch366 faldo:location ?targetMotifMatchRegionMatch367 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00183369 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP45568MF_00183360 .
?targetMotifMatchRegionMatch367 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00183368 .
?targetMotifMatchRegionMatchBeginMF_00183368 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00183361 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00183369 edam:has_input signature:MF_00183 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP45568MF_00183358, 1, (STRLEN(?templateMotifCigarP45568MF_00183358) - STRLEN(REPLACE(?templateMotifCigarP45568MF_00183358, CONCAT('^(?:-*[^-]){', STR(((209 - ?templateMotifSequenceMatchBeginPositionP45568359) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1370) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP45568MF_00183360, 1, (STRLEN(?targetMotifMatchCigarP45568MF_00183360) - STRLEN(REPLACE(?targetMotifMatchCigarP45568MF_00183360, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1370), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP45568MF_00183360, 1, (STRLEN(?targetMotifMatchCigarP45568MF_00183360) - STRLEN(REPLACE(?targetMotifMatchCigarP45568MF_00183360, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1370), '}'), '')))), '[^-]', ''))) AS ?step2371) .
BIND(((?step2371 + ?targetMotifMatchRegionMatchBeginPositionMF_00183361) - 1) AS ?thisPositionOn107) .
BIND(?thisPositionOn107 AS ?thisPositionOn108) .
BIND(?this AS ?pfs1t372) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn107))) AS ?pfsb104) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn108))) AS ?pfse105) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn107, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00183a103')) AS ?annotation103) .
BIND(?this AS ?pfs102) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch377 faldo:location ?templateMotifSequenceMatchRegionP45568378 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP45568380 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP45568MF_00183373 .
?templateMotifSequenceMatchRegionP45568378 faldo:begin ?templateMotifSequenceMatchBeginP45568379 .
?templateMotifSequenceMatchBeginP45568379 faldo:position ?templateMotifSequenceMatchBeginPositionP45568374 ;
faldo:reference isoform:P45568-1 .
?templateMotifSequenceProfileAlignmentOperationP45568380 edam:has_input signature:MF_00183 ;
rdf:type edam:operation_0300 .
?targetMotifMatch381 faldo:location ?targetMotifMatchRegionMatch382 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00183384 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP45568MF_00183375 .
?targetMotifMatchRegionMatch382 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00183383 .
?targetMotifMatchRegionMatchBeginMF_00183383 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00183376 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00183384 edam:has_input signature:MF_00183 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP45568MF_00183373, 1, (STRLEN(?templateMotifCigarP45568MF_00183373) - STRLEN(REPLACE(?templateMotifCigarP45568MF_00183373, CONCAT('^(?:-*[^-]){', STR(((215 - ?templateMotifSequenceMatchBeginPositionP45568374) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1385) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP45568MF_00183375, 1, (STRLEN(?targetMotifMatchCigarP45568MF_00183375) - STRLEN(REPLACE(?targetMotifMatchCigarP45568MF_00183375, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1385), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP45568MF_00183375, 1, (STRLEN(?targetMotifMatchCigarP45568MF_00183375) - STRLEN(REPLACE(?targetMotifMatchCigarP45568MF_00183375, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1385), '}'), '')))), '[^-]', ''))) AS ?step2386) .
BIND(((?step2386 + ?targetMotifMatchRegionMatchBeginPositionMF_00183376) - 1) AS ?thisPositionOn114) .
BIND(?thisPositionOn114 AS ?thisPositionOn115) .
BIND(?this AS ?pfs1t387) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn114))) AS ?pfsb111) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn115))) AS ?pfse112) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn114, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_00183a110')) AS ?annotation110) .
BIND(?this AS ?pfs109) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch392 faldo:location ?templateMotifSequenceMatchRegionP45568393 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP45568395 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP45568MF_00183388 .
?templateMotifSequenceMatchRegionP45568393 faldo:begin ?templateMotifSequenceMatchBeginP45568394 .
?templateMotifSequenceMatchBeginP45568394 faldo:position ?templateMotifSequenceMatchBeginPositionP45568389 ;
faldo:reference isoform:P45568-1 .
?templateMotifSequenceProfileAlignmentOperationP45568395 edam:has_input signature:MF_00183 ;
rdf:type edam:operation_0300 .
?targetMotifMatch396 faldo:location ?targetMotifMatchRegionMatch397 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00183399 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP45568MF_00183390 .
?targetMotifMatchRegionMatch397 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00183398 .
?targetMotifMatchRegionMatchBeginMF_00183398 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00183391 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00183399 edam:has_input signature:MF_00183 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP45568MF_00183388, 1, (STRLEN(?templateMotifCigarP45568MF_00183388) - STRLEN(REPLACE(?templateMotifCigarP45568MF_00183388, CONCAT('^(?:-*[^-]){', STR(((222 - ?templateMotifSequenceMatchBeginPositionP45568389) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1400) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP45568MF_00183390, 1, (STRLEN(?targetMotifMatchCigarP45568MF_00183390) - STRLEN(REPLACE(?targetMotifMatchCigarP45568MF_00183390, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1400), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP45568MF_00183390, 1, (STRLEN(?targetMotifMatchCigarP45568MF_00183390) - STRLEN(REPLACE(?targetMotifMatchCigarP45568MF_00183390, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1400), '}'), '')))), '[^-]', ''))) AS ?step2401) .
BIND(((?step2401 + ?targetMotifMatchRegionMatchBeginPositionMF_00183391) - 1) AS ?thisPositionOn121) .
BIND(?thisPositionOn121 AS ?thisPositionOn122) .
BIND(?this AS ?pfs1t402) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn121))) AS ?pfsb118) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn122))) AS ?pfse119) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn121, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_00183a117')) AS ?annotation117) .
BIND(?this AS ?pfs116) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch407 faldo:location ?templateMotifSequenceMatchRegionP45568408 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP45568410 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP45568MF_00183403 .
?templateMotifSequenceMatchRegionP45568408 faldo:begin ?templateMotifSequenceMatchBeginP45568409 .
?templateMotifSequenceMatchBeginP45568409 faldo:position ?templateMotifSequenceMatchBeginPositionP45568404 ;
faldo:reference isoform:P45568-1 .
?templateMotifSequenceProfileAlignmentOperationP45568410 edam:has_input signature:MF_00183 ;
rdf:type edam:operation_0300 .
?targetMotifMatch411 faldo:location ?targetMotifMatchRegionMatch412 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00183414 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP45568MF_00183405 .
?targetMotifMatchRegionMatch412 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00183413 .
?targetMotifMatchRegionMatchBeginMF_00183413 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00183406 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00183414 edam:has_input signature:MF_00183 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP45568MF_00183403, 1, (STRLEN(?templateMotifCigarP45568MF_00183403) - STRLEN(REPLACE(?templateMotifCigarP45568MF_00183403, CONCAT('^(?:-*[^-]){', STR(((227 - ?templateMotifSequenceMatchBeginPositionP45568404) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1415) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP45568MF_00183405, 1, (STRLEN(?targetMotifMatchCigarP45568MF_00183405) - STRLEN(REPLACE(?targetMotifMatchCigarP45568MF_00183405, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1415), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP45568MF_00183405, 1, (STRLEN(?targetMotifMatchCigarP45568MF_00183405) - STRLEN(REPLACE(?targetMotifMatchCigarP45568MF_00183405, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1415), '}'), '')))), '[^-]', ''))) AS ?step2416) .
BIND(((?step2416 + ?targetMotifMatchRegionMatchBeginPositionMF_00183406) - 1) AS ?thisPositionOn128) .
BIND(?thisPositionOn128 AS ?thisPositionOn129) .
BIND(?this AS ?pfs1t417) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn128))) AS ?pfsb125) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn129))) AS ?pfse126) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn128, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_00183a124')) AS ?annotation124) .
BIND(?this AS ?pfs123) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch422 faldo:location ?templateMotifSequenceMatchRegionP45568423 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP45568425 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP45568MF_00183418 .
?templateMotifSequenceMatchRegionP45568423 faldo:begin ?templateMotifSequenceMatchBeginP45568424 .
?templateMotifSequenceMatchBeginP45568424 faldo:position ?templateMotifSequenceMatchBeginPositionP45568419 ;
faldo:reference isoform:P45568-1 .
?templateMotifSequenceProfileAlignmentOperationP45568425 edam:has_input signature:MF_00183 ;
rdf:type edam:operation_0300 .
?targetMotifMatch426 faldo:location ?targetMotifMatchRegionMatch427 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00183429 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP45568MF_00183420 .
?targetMotifMatchRegionMatch427 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00183428 .
?targetMotifMatchRegionMatchBeginMF_00183428 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00183421 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00183429 edam:has_input signature:MF_00183 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP45568MF_00183418, 1, (STRLEN(?templateMotifCigarP45568MF_00183418) - STRLEN(REPLACE(?templateMotifCigarP45568MF_00183418, CONCAT('^(?:-*[^-]){', STR(((228 - ?templateMotifSequenceMatchBeginPositionP45568419) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1430) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP45568MF_00183420, 1, (STRLEN(?targetMotifMatchCigarP45568MF_00183420) - STRLEN(REPLACE(?targetMotifMatchCigarP45568MF_00183420, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1430), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP45568MF_00183420, 1, (STRLEN(?targetMotifMatchCigarP45568MF_00183420) - STRLEN(REPLACE(?targetMotifMatchCigarP45568MF_00183420, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1430), '}'), '')))), '[^-]', ''))) AS ?step2431) .
BIND(((?step2431 + ?targetMotifMatchRegionMatchBeginPositionMF_00183421) - 1) AS ?thisPositionOn135) .
BIND(?thisPositionOn135 AS ?thisPositionOn136) .
BIND(?this AS ?pfs1t432) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn135))) AS ?pfsb132) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn136))) AS ?pfse133) .
FILTER (REGEX('[KR]', SUBSTR(?thisSequenceValue, ?thisPositionOn135, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00183a131')) AS ?annotation131) .
BIND(?this AS ?pfs130) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch437 faldo:location ?templateMotifSequenceMatchRegionP45568438 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP45568440 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP45568MF_00183433 .
?templateMotifSequenceMatchRegionP45568438 faldo:begin ?templateMotifSequenceMatchBeginP45568439 .
?templateMotifSequenceMatchBeginP45568439 faldo:position ?templateMotifSequenceMatchBeginPositionP45568434 ;
faldo:reference isoform:P45568-1 .
?templateMotifSequenceProfileAlignmentOperationP45568440 edam:has_input signature:MF_00183 ;
rdf:type edam:operation_0300 .
?targetMotifMatch441 faldo:location ?targetMotifMatchRegionMatch442 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00183444 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP45568MF_00183435 .
?targetMotifMatchRegionMatch442 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00183443 .
?targetMotifMatchRegionMatchBeginMF_00183443 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00183436 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00183444 edam:has_input signature:MF_00183 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP45568MF_00183433, 1, (STRLEN(?templateMotifCigarP45568MF_00183433) - STRLEN(REPLACE(?templateMotifCigarP45568MF_00183433, CONCAT('^(?:-*[^-]){', STR(((231 - ?templateMotifSequenceMatchBeginPositionP45568434) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1445) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP45568MF_00183435, 1, (STRLEN(?targetMotifMatchCigarP45568MF_00183435) - STRLEN(REPLACE(?targetMotifMatchCigarP45568MF_00183435, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1445), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP45568MF_00183435, 1, (STRLEN(?targetMotifMatchCigarP45568MF_00183435) - STRLEN(REPLACE(?targetMotifMatchCigarP45568MF_00183435, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1445), '}'), '')))), '[^-]', ''))) AS ?step2446) .
BIND(((?step2446 + ?targetMotifMatchRegionMatchBeginPositionMF_00183436) - 1) AS ?thisPositionOn142) .
BIND(?thisPositionOn142 AS ?thisPositionOn143) .
BIND(?this AS ?pfs1t447) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn142))) AS ?pfsb139) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn143))) AS ?pfse140) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn142, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_00183a138')) AS ?annotation138) .
BIND(?this AS ?pfs137) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch452 faldo:location ?templateMotifSequenceMatchRegionP45568453 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP45568455 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP45568MF_00183448 .
?templateMotifSequenceMatchRegionP45568453 faldo:begin ?templateMotifSequenceMatchBeginP45568454 .
?templateMotifSequenceMatchBeginP45568454 faldo:position ?templateMotifSequenceMatchBeginPositionP45568449 ;
faldo:reference isoform:P45568-1 .
?templateMotifSequenceProfileAlignmentOperationP45568455 edam:has_input signature:MF_00183 ;
rdf:type edam:operation_0300 .
?targetMotifMatch456 faldo:location ?targetMotifMatchRegionMatch457 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00183459 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP45568MF_00183450 .
?targetMotifMatchRegionMatch457 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00183458 .
?targetMotifMatchRegionMatchBeginMF_00183458 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00183451 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00183459 edam:has_input signature:MF_00183 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP45568MF_00183448, 1, (STRLEN(?templateMotifCigarP45568MF_00183448) - STRLEN(REPLACE(?templateMotifCigarP45568MF_00183448, CONCAT('^(?:-*[^-]){', STR(((150 - ?templateMotifSequenceMatchBeginPositionP45568449) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1460) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP45568MF_00183450, 1, (STRLEN(?targetMotifMatchCigarP45568MF_00183450) - STRLEN(REPLACE(?targetMotifMatchCigarP45568MF_00183450, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1460), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP45568MF_00183450, 1, (STRLEN(?targetMotifMatchCigarP45568MF_00183450) - STRLEN(REPLACE(?targetMotifMatchCigarP45568MF_00183450, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1460), '}'), '')))), '[^-]', ''))) AS ?step2461) .
BIND(((?step2461 + ?targetMotifMatchRegionMatchBeginPositionMF_00183451) - 1) AS ?thisPositionOn149) .
BIND(?thisPositionOn149 AS ?thisPositionOn150) .
BIND(?this AS ?pfs2t462) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn149))) AS ?pfsb146) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn150))) AS ?pfse147) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn149, 1) = 'D')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP45568MF_00183448, 1, (STRLEN(?templateMotifCigarP45568MF_00183448) - STRLEN(REPLACE(?templateMotifCigarP45568MF_00183448, CONCAT('^(?:-*[^-]){', STR(((152 - ?templateMotifSequenceMatchBeginPositionP45568449) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1463) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP45568MF_00183450, 1, (STRLEN(?targetMotifMatchCigarP45568MF_00183450) - STRLEN(REPLACE(?targetMotifMatchCigarP45568MF_00183450, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1463), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP45568MF_00183450, 1, (STRLEN(?targetMotifMatchCigarP45568MF_00183450) - STRLEN(REPLACE(?targetMotifMatchCigarP45568MF_00183450, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1463), '}'), '')))), '[^-]', ''))) AS ?step2464) .
BIND(((?step2464 + ?targetMotifMatchRegionMatchBeginPositionMF_00183451) - 1) AS ?thisPositionOn155) .
BIND(?thisPositionOn155 AS ?thisPositionOn156) .
BIND(?this AS ?pfs2t465) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn155))) AS ?pfsb152) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn156))) AS ?pfse153) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn155, 1) = 'E')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP45568MF_00183448, 1, (STRLEN(?templateMotifCigarP45568MF_00183448) - STRLEN(REPLACE(?templateMotifCigarP45568MF_00183448, CONCAT('^(?:-*[^-]){', STR(((231 - ?templateMotifSequenceMatchBeginPositionP45568449) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1466) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP45568MF_00183450, 1, (STRLEN(?targetMotifMatchCigarP45568MF_00183450) - STRLEN(REPLACE(?targetMotifMatchCigarP45568MF_00183450, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1466), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP45568MF_00183450, 1, (STRLEN(?targetMotifMatchCigarP45568MF_00183450) - STRLEN(REPLACE(?targetMotifMatchCigarP45568MF_00183450, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1466), '}'), '')))), '[^-]', ''))) AS ?step2467) .
BIND(((?step2467 + ?targetMotifMatchRegionMatchBeginPositionMF_00183451) - 1) AS ?thisPositionOn161) .
BIND(?thisPositionOn161 AS ?thisPositionOn162) .
BIND(?this AS ?pfs2t468) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn161))) AS ?pfsb158) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn162))) AS ?pfse159) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn161, 1) = 'E')) .
BIND(?this AS ?pfs144) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(?this AS ?case10) .
}
}
"xsd:string |
