| http://purl.uniprot.org/unirules/MF_00208#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:86713 up:source unirule:MF_00208 .
_:86714 up:source unirule:MF_00208 .
_:86715 up:source unirule:MF_00208 .
_:86716 up:source unirule:MF_00208 .
_:86717 up:source unirule:MF_00208 .
_:86718 up:source unirule:MF_00208 .
_:86719 up:source unirule:MF_00208 .
_:86720 up:source unirule:MF_00208 .
_:86721 up:source unirule:MF_00208 .
_:86722 up:source unirule:MF_00208 .
_:86723 up:source unirule:MF_00208 .
_:86724 up:source unirule:MF_00208 .
_:86725 up:source unirule:MF_00208 .
_:86726 up:source unirule:MF_00208 .
_:86727 up:source unirule:MF_00208 .
_:86728 up:source unirule:MF_00208 .
_:86729 up:source unirule:MF_00208 .
_:86730 up:source unirule:MF_00208 .
_:86731 up:source unirule:MF_00208 .
_:86732 up:source unirule:MF_00208 .
_:86733 up:source unirule:MF_00208 .
_:86734 up:source unirule:MF_00208 .
_:86735 up:source unirule:MF_00208 .
_:86736 up:source unirule:MF_00208 .
_:86737 up:source unirule:MF_00208 .
_:86738 up:source unirule:MF_00208 .
_:86739 up:source unirule:MF_00208 .
_:86740 up:source unirule:MF_00208 .
_:86741 up:source unirule:MF_00208 .
_:86742 up:source unirule:MF_00208 .
_:86743 up:source unirule:MF_00208 .
_:86744 up:source unirule:MF_00208 .
_:86745 up:source unirule:MF_00208 .
_:86746 up:source unirule:MF_00208 .
_:86747 up:source unirule:MF_00208 .
_:86748 up:source unirule:MF_00208 .
_:86749 up:source unirule:MF_00208 .
_:86750 up:source unirule:MF_00208 .
_:86751 up:source unirule:MF_00208 .
_:86752 up:source unirule:MF_00208 .
_:86753 up:source unirule:MF_00208 .
_:86754 up:source unirule:MF_00208 .
_:86755 up:source unirule:MF_00208 .
_:86756 up:source unirule:MF_00208 .
_:86757 up:source unirule:MF_00208 .
_:86758 up:source unirule:MF_00208 .
_:86759 up:source unirule:MF_00208 .
_:86760 up:source unirule:MF_00208 .
_:86761 up:source unirule:MF_00208 .
_:86762 up:source unirule:MF_00208 .
_:86763 up:source unirule:MF_00208 .
_:86764 up:source unirule:MF_00208 .
?this up:annotation ?annotation1 ,
?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation6 ;
up:classifiedWith GO:0000287 ,
GO:0005524 ,
GO:0005737 ,
GO:0009252 ,
keyword:131 ,
keyword:132 ,
keyword:133 ,
keyword:436 ,
keyword:460 ,
keyword:547 ,
keyword:573 ,
keyword:67 ,
keyword:961 ,
keyword:963 .
?gene0 skos:prefLabel 'murE' .
?annotation1 up:cofactor chebi:18420 ;
rdf:type up:Cofactor_Annotation .
?annotation2 a up:Pathway_Annotation ;
rdfs:comment 'Cell wall biogenesis; peptidoglycan biosynthesis.' .
?annotation3 a up:Subcellular_Location_Annotation .
?annotation3li4 up:cellularComponent .
?annotation5 a up:PTM_Annotation ;
rdfs:comment 'Carboxylation is probably crucial for Mg(2+) binding and, consequently, for the gamma-phosphate positioning of ATP.' .
?annotation6 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the MurCDEF family. MurE subfamily.' .
?case7 up:alternativeName ?name9 ,
?name10 ,
?name11 ,
?name12 ,
?name13 ;
up:classifiedWith GO:0008765 ;
up:recommendedName ?name8 .
?name8 up:ecName '6.3.2.13' ;
up:fullName 'UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase' ;
rdf:type up:Structured_Name .
?name9 up:fullName 'Meso-A2pm-adding enzyme' ;
rdf:type up:Structured_Name .
?name10 up:fullName 'Meso-diaminopimelate-adding enzyme' ;
rdf:type up:Structured_Name .
?name11 up:fullName 'UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase' ;
rdf:type up:Structured_Name .
?name12 up:fullName 'UDP-MurNAc-tripeptide synthetase' ;
rdf:type up:Structured_Name .
?name13 up:fullName 'UDP-N-acetylmuramyl-tripeptide synthetase' ;
rdf:type up:Structured_Name .
?case14 up:alternativeName ?name16 ,
?name17 ,
?name18 ,
?name19 ;
up:classifiedWith GO:0047482 ;
up:recommendedName ?name15 .
?name15 up:ecName '6.3.2.7' ;
up:fullName 'UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase' ;
rdf:type up:Structured_Name .
?name16 up:fullName 'L-lysine-adding enzyme' ;
rdf:type up:Structured_Name .
?name17 up:fullName 'UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase' ;
rdf:type up:Structured_Name .
?name18 up:fullName 'UDP-MurNAc-tripeptide synthetase' ;
rdf:type up:Structured_Name .
?name19 up:fullName 'UDP-N-acetylmuramyl-tripeptide synthetase' ;
rdf:type up:Structured_Name .
?case20 up:alternativeName ?name22 ;
up:classifiedWith GO:0016881 ;
up:recommendedName ?name21 .
?name21 up:ecName '6.3.2.-' ;
up:fullName 'UDP-N-acetylmuramyl-tripeptide synthetase' ;
rdf:type up:Structured_Name .
?name22 up:fullName 'UDP-MurNAc-tripeptide synthetase' ;
rdf:type up:Structured_Name .
?pfs23 up:annotation ?annotation24 .
?annotation24 faldo:begin ?pfsb25 ;
faldo:end ?pfse26 ;
rdf:type up:Motif_Annotation ;
rdfs:comment 'L-lysine recognition motif' .
?pfsb25 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfse26 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfs29 up:annotation ?annotation30 .
?annotation30 faldo:begin ?pfsb31 ;
faldo:end ?pfse32 ;
rdf:type up:Motif_Annotation ;
rdfs:comment 'Meso-diaminopimelate recognition motif' .
?pfsb31 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfse32 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfs35 up:annotation ?annotation36 .
?annotation36 faldo:begin ?pfsb37 ;
faldo:end ?pfse38 ;
up:ligand ?ligand39 ;
rdf:type up:Binding_Site_Annotation .
?pfsb37 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?pfse38 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?ligand39 rdfs:subClassOf chebi:30616 .
?pfs42 up:annotation ?annotation43 .
?annotation43 faldo:begin ?pfsb44 ;
faldo:end ?pfse45 ;
up:ligand ?ligand46 ;
rdf:type up:Binding_Site_Annotation .
?pfsb44 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?pfse45 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?ligand46 rdfs:subClassOf chebi:83900 .
?pfs49 up:annotation ?annotation50 .
?annotation50 faldo:begin ?pfsb51 ;
faldo:end ?pfse52 ;
up:ligand ?ligand53 ;
rdf:type up:Binding_Site_Annotation .
?pfsb51 faldo:position ?thisPositionOn54 ;
rdf:type faldo:ExactPosition .
?pfse52 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
?ligand53 rdfs:subClassOf chebi:83900 .
?pfs56 up:annotation ?annotation57 .
?annotation57 faldo:begin ?pfsb58 ;
faldo:end ?pfse59 ;
up:ligand ?ligand60 ;
rdf:type up:Binding_Site_Annotation .
?pfsb58 faldo:position ?thisPositionOn61 ;
rdf:type faldo:ExactPosition .
?pfse59 faldo:position ?thisPositionOn62 ;
rdf:type faldo:ExactPosition .
?ligand60 rdfs:subClassOf chebi:83900 .
?pfs63 up:annotation ?annotation64 .
?annotation64 faldo:begin ?pfsb65 ;
faldo:end ?pfse66 ;
up:ligand ?ligand67 ;
rdf:type up:Binding_Site_Annotation .
?pfsb65 faldo:position ?thisPositionOn68 ;
rdf:type faldo:ExactPosition .
?pfse66 faldo:position ?thisPositionOn69 ;
rdf:type faldo:ExactPosition .
?ligand67 rdfs:subClassOf chebi:83900 .
?pfs70 up:annotation ?annotation71 .
?annotation71 faldo:begin ?pfsb72 ;
faldo:end ?pfse73 ;
up:ligand ?ligand74 ;
rdf:type up:Binding_Site_Annotation .
?pfsb72 faldo:position ?thisPositionOn75 ;
rdf:type faldo:ExactPosition .
?pfse73 faldo:position ?thisPositionOn76 ;
rdf:type faldo:ExactPosition .
?ligand74 rdfs:subClassOf chebi:83900 .
?pfs77 up:annotation ?annotation78 .
?annotation78 faldo:begin ?pfsb79 ;
faldo:end ?pfse80 ;
up:ligand ?ligand81 ;
rdf:type up:Binding_Site_Annotation .
?pfsb79 faldo:position ?thisPositionOn82 ;
rdf:type faldo:ExactPosition .
?pfse80 faldo:position ?thisPositionOn83 ;
rdf:type faldo:ExactPosition .
?ligand81 rdfs:subClassOf chebi:83900 .
?pfs84 up:annotation ?annotation85 .
?annotation85 faldo:begin ?pfsb86 ;
faldo:end ?pfse87 ;
up:ligand ?ligand88 ;
rdf:type up:Binding_Site_Annotation .
?pfsb86 faldo:position ?thisPositionOn89 ;
rdf:type faldo:ExactPosition .
?pfse87 faldo:position ?thisPositionOn90 ;
rdf:type faldo:ExactPosition .
?ligand88 rdfs:subClassOf chebi:83900 .
?pfs91 up:annotation ?annotation92 .
?annotation92 faldo:begin ?pfsb93 ;
faldo:end ?pfse94 ;
up:ligand ?ligand95 ;
rdf:type up:Binding_Site_Annotation .
?pfsb93 faldo:position ?thisPositionOn96 ;
rdf:type faldo:ExactPosition .
?pfse94 faldo:position ?thisPositionOn97 ;
rdf:type faldo:ExactPosition .
?ligand95 rdfs:subClassOf chebi:83900 .
?pfs98 up:annotation ?annotation99 .
?annotation99 faldo:begin ?pfsb100 ;
faldo:end ?pfse101 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'N6-carboxylysine' .
?pfsb100 faldo:position ?thisPositionOn102 ;
rdf:type faldo:ExactPosition .
?pfse101 faldo:position ?thisPositionOn103 ;
rdf:type faldo:ExactPosition .
?pfs104 up:annotation ?annotation105 .
?annotation105 faldo:begin ?pfsb106 ;
faldo:end ?pfse107 ;
up:ligand ?ligand108 ;
rdf:type up:Binding_Site_Annotation .
?pfsb106 faldo:position ?thisPositionOn109 ;
rdf:type faldo:ExactPosition .
?pfse107 faldo:position ?thisPositionOn110 ;
rdf:type faldo:ExactPosition .
?ligand108 rdfs:subClassOf chebi:57791 .
?pfs111 up:annotation ?annotation112 .
?annotation112 faldo:begin ?pfsb113 ;
faldo:end ?pfse114 ;
up:ligand ?ligand115 ;
rdf:type up:Binding_Site_Annotation .
?pfsb113 faldo:position ?thisPositionOn116 ;
rdf:type faldo:ExactPosition .
?pfse114 faldo:position ?thisPositionOn117 ;
rdf:type faldo:ExactPosition .
?ligand115 rdfs:subClassOf chebi:57791 .
?pfs118 up:annotation ?annotation119 .
?annotation119 faldo:begin ?pfsb120 ;
faldo:end ?pfse121 ;
up:ligand ?ligand122 ;
rdf:type up:Binding_Site_Annotation .
?pfsb120 faldo:position ?thisPositionOn123 ;
rdf:type faldo:ExactPosition .
?pfse121 faldo:position ?thisPositionOn124 ;
rdf:type faldo:ExactPosition .
?ligand122 rdfs:subClassOf chebi:57791 .
?pfs125 up:annotation ?annotation126 .
?annotation126 faldo:begin ?pfsb127 ;
faldo:end ?pfse128 ;
up:ligand ?ligand129 ;
rdf:type up:Binding_Site_Annotation .
?pfsb127 faldo:position ?thisPositionOn130 ;
rdf:type faldo:ExactPosition .
?pfse128 faldo:position ?thisPositionOn131 ;
rdf:type faldo:ExactPosition .
?ligand129 rdfs:subClassOf chebi:57791 .
_:86765 a rdf:Statement ;
up:attribution _:86713 ;
rdf:subject ?gene0 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene0 .
_:86766 a rdf:Statement ;
up:attribution _:86714 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation1 .
_:86767 a rdf:Statement ;
up:attribution _:86715 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:86768 a rdf:Statement ;
up:attribution _:86716 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:86769 a rdf:Statement ;
up:attribution _:86717 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:86770 a rdf:Statement ;
up:attribution _:86718 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:86771 a rdf:Statement ;
up:attribution _:86719 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:86772 a rdf:Statement ;
up:attribution _:86720 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:131 .
_:86773 a rdf:Statement ;
up:attribution _:86721 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:132 .
_:86774 a rdf:Statement ;
up:attribution _:86722 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:133 .
_:86775 a rdf:Statement ;
up:attribution _:86723 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:961 .
_:86776 a rdf:Statement ;
up:attribution _:86724 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:86777 a rdf:Statement ;
up:attribution _:86725 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:436 .
_:86778 a rdf:Statement ;
up:attribution _:86726 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:86779 a rdf:Statement ;
up:attribution _:86727 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:86780 a rdf:Statement ;
up:attribution _:86728 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:573 .
_:86781 a rdf:Statement ;
up:attribution _:86729 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000287 .
_:86782 a rdf:Statement ;
up:attribution _:86730 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005524 .
_:86783 a rdf:Statement ;
up:attribution _:86731 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009252 .
_:86784 a rdf:Statement ;
up:attribution _:86732 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:86785 a rdf:Statement ;
up:attribution _:86733 ;
rdf:subject ?case7 ;
rdf:predicate up:recommendedName ;
rdf:object ?name8 .
_:86786 a rdf:Statement ;
up:attribution _:86734 ;
rdf:subject ?case7 ;
rdf:predicate up:alternativeName ;
rdf:object ?name9 .
_:86787 a rdf:Statement ;
up:attribution _:86735 ;
rdf:subject ?case7 ;
rdf:predicate up:alternativeName ;
rdf:object ?name10 .
_:86788 a rdf:Statement ;
up:attribution _:86736 ;
rdf:subject ?case7 ;
rdf:predicate up:alternativeName ;
rdf:object ?name11 .
_:86789 a rdf:Statement ;
up:attribution _:86737 ;
rdf:subject ?case7 ;
rdf:predicate up:alternativeName ;
rdf:object ?name12 .
_:86790 a rdf:Statement ;
up:attribution _:86738 ;
rdf:subject ?case7 ;
rdf:predicate up:alternativeName ;
rdf:object ?name13 .
_:86791 a rdf:Statement ;
up:attribution _:86739 ;
rdf:subject ?case7 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008765 .
_:86792 a rdf:Statement ;
up:attribution _:86740 ;
rdf:subject ?case14 ;
rdf:predicate up:recommendedName ;
rdf:object ?name15 .
_:86793 a rdf:Statement ;
up:attribution _:86741 ;
rdf:subject ?case14 ;
rdf:predicate up:alternativeName ;
rdf:object ?name16 .
_:86794 a rdf:Statement ;
up:attribution _:86742 ;
rdf:subject ?case14 ;
rdf:predicate up:alternativeName ;
rdf:object ?name17 .
_:86795 a rdf:Statement ;
up:attribution _:86743 ;
rdf:subject ?case14 ;
rdf:predicate up:alternativeName ;
rdf:object ?name18 .
_:86796 a rdf:Statement ;
up:attribution _:86744 ;
rdf:subject ?case14 ;
rdf:predicate up:alternativeName ;
rdf:object ?name19 .
_:86797 a rdf:Statement ;
up:attribution _:86745 ;
rdf:subject ?case14 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0047482 .
_:86798 a rdf:Statement ;
up:attribution _:86746 ;
rdf:subject ?case20 ;
rdf:predicate up:recommendedName ;
rdf:object ?name21 .
_:86799 a rdf:Statement ;
up:attribution _:86747 ;
rdf:subject ?case20 ;
rdf:predicate up:alternativeName ;
rdf:object ?name22 .
_:86800 a rdf:Statement ;
up:attribution _:86748 ;
rdf:subject ?case20 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016881 .
_:86801 a rdf:Statement ;
up:source unirule:MF_00208 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:86802 a rdf:Statement ;
up:attribution _:86749 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:86803 a rdf:Statement ;
up:source unirule:MF_00208 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:86804 a rdf:Statement ;
up:attribution _:86750 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:86805 a rdf:Statement ;
up:source unirule:MF_00208 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:86806 a rdf:Statement ;
up:attribution _:86751 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:86807 a rdf:Statement ;
up:source unirule:MF_00208 ;
rdf:subject ?pfs42 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:86808 a rdf:Statement ;
up:attribution _:86752 ;
rdf:subject ?pfs42 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:86809 a rdf:Statement ;
up:source unirule:MF_00208 ;
rdf:subject ?pfs49 ;
rdf:predicate up:annotation ;
rdf:object ?annotation50 .
_:86810 a rdf:Statement ;
up:attribution _:86753 ;
rdf:subject ?pfs49 ;
rdf:predicate up:annotation ;
rdf:object ?annotation50 .
_:86811 a rdf:Statement ;
up:source unirule:MF_00208 ;
rdf:subject ?pfs56 ;
rdf:predicate up:annotation ;
rdf:object ?annotation57 .
_:86812 a rdf:Statement ;
up:attribution _:86754 ;
rdf:subject ?pfs56 ;
rdf:predicate up:annotation ;
rdf:object ?annotation57 .
_:86813 a rdf:Statement ;
up:source unirule:MF_00208 ;
rdf:subject ?pfs63 ;
rdf:predicate up:annotation ;
rdf:object ?annotation64 .
_:86814 a rdf:Statement ;
up:attribution _:86755 ;
rdf:subject ?pfs63 ;
rdf:predicate up:annotation ;
rdf:object ?annotation64 .
_:86815 a rdf:Statement ;
up:source unirule:MF_00208 ;
rdf:subject ?pfs70 ;
rdf:predicate up:annotation ;
rdf:object ?annotation71 .
_:86816 a rdf:Statement ;
up:attribution _:86756 ;
rdf:subject ?pfs70 ;
rdf:predicate up:annotation ;
rdf:object ?annotation71 .
_:86817 a rdf:Statement ;
up:source unirule:MF_00208 ;
rdf:subject ?pfs77 ;
rdf:predicate up:annotation ;
rdf:object ?annotation78 .
_:86818 a rdf:Statement ;
up:attribution _:86757 ;
rdf:subject ?pfs77 ;
rdf:predicate up:annotation ;
rdf:object ?annotation78 .
_:86819 a rdf:Statement ;
up:source unirule:MF_00208 ;
rdf:subject ?pfs84 ;
rdf:predicate up:annotation ;
rdf:object ?annotation85 .
_:86820 a rdf:Statement ;
up:attribution _:86758 ;
rdf:subject ?pfs84 ;
rdf:predicate up:annotation ;
rdf:object ?annotation85 .
_:86821 a rdf:Statement ;
up:source unirule:MF_00208 ;
rdf:subject ?pfs91 ;
rdf:predicate up:annotation ;
rdf:object ?annotation92 .
_:86822 a rdf:Statement ;
up:attribution _:86759 ;
rdf:subject ?pfs91 ;
rdf:predicate up:annotation ;
rdf:object ?annotation92 .
_:86823 a rdf:Statement ;
up:source unirule:MF_00208 ;
rdf:subject ?pfs98 ;
rdf:predicate up:annotation ;
rdf:object ?annotation99 .
_:86824 a rdf:Statement ;
up:attribution _:86760 ;
rdf:subject ?pfs98 ;
rdf:predicate up:annotation ;
rdf:object ?annotation99 .
_:86825 a rdf:Statement ;
up:source unirule:MF_00208 ;
rdf:subject ?pfs104 ;
rdf:predicate up:annotation ;
rdf:object ?annotation105 .
_:86826 a rdf:Statement ;
up:attribution _:86761 ;
rdf:subject ?pfs104 ;
rdf:predicate up:annotation ;
rdf:object ?annotation105 .
_:86827 a rdf:Statement ;
up:source unirule:MF_00208 ;
rdf:subject ?pfs111 ;
rdf:predicate up:annotation ;
rdf:object ?annotation112 .
_:86828 a rdf:Statement ;
up:attribution _:86762 ;
rdf:subject ?pfs111 ;
rdf:predicate up:annotation ;
rdf:object ?annotation112 .
_:86829 a rdf:Statement ;
up:source unirule:MF_00208 ;
rdf:subject ?pfs118 ;
rdf:predicate up:annotation ;
rdf:object ?annotation119 .
_:86830 a rdf:Statement ;
up:attribution _:86763 ;
rdf:subject ?pfs118 ;
rdf:predicate up:annotation ;
rdf:object ?annotation119 .
_:86831 a rdf:Statement ;
up:source unirule:MF_00208 ;
rdf:subject ?pfs125 ;
rdf:predicate up:annotation ;
rdf:object ?annotation126 .
_:86832 a rdf:Statement ;
up:attribution _:86764 ;
rdf:subject ?pfs125 ;
rdf:predicate up:annotation ;
rdf:object ?annotation126 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00208
#Rule MF_00208 Created by:? on:2005-02-28 Modified by:Elisabeth Coudert on:2025-01-09
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00208 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_00208a1')) AS ?annotation1) .
BIND(URI(CONCAT(STR(?this), '#MF_00208a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_00208a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00208a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00208a6')) AS ?annotation6) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch136 faldo:location ?templateMotifSequenceMatchRegionQ2FZP6137 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ2FZP6139 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ2FZP6MF_00208132 .
?templateMotifSequenceMatchRegionQ2FZP6137 faldo:begin ?templateMotifSequenceMatchBeginQ2FZP6138 .
?templateMotifSequenceMatchBeginQ2FZP6138 faldo:position ?templateMotifSequenceMatchBeginPositionQ2FZP6133 ;
faldo:reference isoform:Q2FZP6-1 .
?templateMotifSequenceProfileAlignmentOperationQ2FZP6139 edam:has_input signature:MF_00208 ;
rdf:type edam:operation_0300 .
?targetMotifMatch140 faldo:location ?targetMotifMatchRegionMatch141 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00208143 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ2FZP6MF_00208134 .
?targetMotifMatchRegionMatch141 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00208142 .
?targetMotifMatchRegionMatchBeginMF_00208142 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00208135 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00208143 edam:has_input signature:MF_00208 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFT_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ2FZP6MF_00208132, 1, (STRLEN(?templateMotifCigarQ2FZP6MF_00208132) - STRLEN(REPLACE(?templateMotifCigarQ2FZP6MF_00208132, CONCAT('^(?:-*[^-]){', STR(((406 - ?templateMotifSequenceMatchBeginPositionQ2FZP6133) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1144) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ2FZP6MF_00208134, 1, (STRLEN(?targetMotifMatchCigarQ2FZP6MF_00208134) - STRLEN(REPLACE(?targetMotifMatchCigarQ2FZP6MF_00208134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1144), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ2FZP6MF_00208134, 1, (STRLEN(?targetMotifMatchCigarQ2FZP6MF_00208134) - STRLEN(REPLACE(?targetMotifMatchCigarQ2FZP6MF_00208134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1144), '}'), '')))), '[^-]', ''))) AS ?step2145) .
BIND(((?step2145 + ?targetMotifMatchRegionMatchBeginPositionMF_00208135) - 1) AS ?thisPositionOn27) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ2FZP6MF_00208132, 1, (STRLEN(?templateMotifCigarQ2FZP6MF_00208132) - STRLEN(REPLACE(?templateMotifCigarQ2FZP6MF_00208132, CONCAT('^(?:-*[^-]){', STR(((409 - ?templateMotifSequenceMatchBeginPositionQ2FZP6133) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1146) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ2FZP6MF_00208134, 1, (STRLEN(?targetMotifMatchCigarQ2FZP6MF_00208134) - STRLEN(REPLACE(?targetMotifMatchCigarQ2FZP6MF_00208134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1146), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ2FZP6MF_00208134, 1, (STRLEN(?targetMotifMatchCigarQ2FZP6MF_00208134) - STRLEN(REPLACE(?targetMotifMatchCigarQ2FZP6MF_00208134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1146), '}'), '')))), '[^-]', ''))) AS ?step2147) .
BIND(((?step2147 + ?targetMotifMatchRegionMatchBeginPositionMF_00208135) - 1) AS ?thisPositionOn28) .
BIND(?this AS ?pfs1t148) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse26) .
FILTER (REGEX('D[DN]P[NA]', SUBSTR(?thisSequenceValue, ?thisPositionOn27, (?thisPositionOn28 - ?thisPositionOn27)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00208a24')) AS ?annotation24) .
BIND(?this AS ?pfs23) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch153 faldo:location ?templateMotifSequenceMatchRegionP22188154 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP22188156 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP22188MF_00208149 .
?templateMotifSequenceMatchRegionP22188154 faldo:begin ?templateMotifSequenceMatchBeginP22188155 .
?templateMotifSequenceMatchBeginP22188155 faldo:position ?templateMotifSequenceMatchBeginPositionP22188150 ;
faldo:reference isoform:P22188-1 .
?templateMotifSequenceProfileAlignmentOperationP22188156 edam:has_input signature:MF_00208 ;
rdf:type edam:operation_0300 .
?targetMotifMatch157 faldo:location ?targetMotifMatchRegionMatch158 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00208160 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP22188MF_00208151 .
?targetMotifMatchRegionMatch158 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00208159 .
?targetMotifMatchRegionMatchBeginMF_00208159 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00208152 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00208160 edam:has_input signature:MF_00208 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFT_5) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22188MF_00208149, 1, (STRLEN(?templateMotifCigarP22188MF_00208149) - STRLEN(REPLACE(?templateMotifCigarP22188MF_00208149, CONCAT('^(?:-*[^-]){', STR(((414 - ?templateMotifSequenceMatchBeginPositionP22188150) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1161) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22188MF_00208151, 1, (STRLEN(?targetMotifMatchCigarP22188MF_00208151) - STRLEN(REPLACE(?targetMotifMatchCigarP22188MF_00208151, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1161), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22188MF_00208151, 1, (STRLEN(?targetMotifMatchCigarP22188MF_00208151) - STRLEN(REPLACE(?targetMotifMatchCigarP22188MF_00208151, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1161), '}'), '')))), '[^-]', ''))) AS ?step2162) .
BIND(((?step2162 + ?targetMotifMatchRegionMatchBeginPositionMF_00208152) - 1) AS ?thisPositionOn33) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22188MF_00208149, 1, (STRLEN(?templateMotifCigarP22188MF_00208149) - STRLEN(REPLACE(?templateMotifCigarP22188MF_00208149, CONCAT('^(?:-*[^-]){', STR(((417 - ?templateMotifSequenceMatchBeginPositionP22188150) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1163) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22188MF_00208151, 1, (STRLEN(?targetMotifMatchCigarP22188MF_00208151) - STRLEN(REPLACE(?targetMotifMatchCigarP22188MF_00208151, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1163), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22188MF_00208151, 1, (STRLEN(?targetMotifMatchCigarP22188MF_00208151) - STRLEN(REPLACE(?targetMotifMatchCigarP22188MF_00208151, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1163), '}'), '')))), '[^-]', ''))) AS ?step2164) .
BIND(((?step2164 + ?targetMotifMatchRegionMatchBeginPositionMF_00208152) - 1) AS ?thisPositionOn34) .
BIND(?this AS ?pfs2t165) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb31) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse32) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn33, (?thisPositionOn34 - ?thisPositionOn33)) = 'DNPR')) .
BIND(URI(CONCAT(STR(?this), '#MF_00208a30')) AS ?annotation30) .
BIND(?this AS ?pfs29) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch170 faldo:location ?templateMotifSequenceMatchRegionP22188171 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP22188173 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP22188MF_00208166 .
?templateMotifSequenceMatchRegionP22188171 faldo:begin ?templateMotifSequenceMatchBeginP22188172 .
?templateMotifSequenceMatchBeginP22188172 faldo:position ?templateMotifSequenceMatchBeginPositionP22188167 ;
faldo:reference isoform:P22188-1 .
?templateMotifSequenceProfileAlignmentOperationP22188173 edam:has_input signature:MF_00208 ;
rdf:type edam:operation_0300 .
?targetMotifMatch174 faldo:location ?targetMotifMatchRegionMatch175 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00208177 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP22188MF_00208168 .
?targetMotifMatchRegionMatch175 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00208176 .
?targetMotifMatchRegionMatchBeginMF_00208176 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00208169 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00208177 edam:has_input signature:MF_00208 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22188MF_00208166, 1, (STRLEN(?templateMotifCigarP22188MF_00208166) - STRLEN(REPLACE(?templateMotifCigarP22188MF_00208166, CONCAT('^(?:-*[^-]){', STR(((116 - ?templateMotifSequenceMatchBeginPositionP22188167) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1178) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22188MF_00208168, 1, (STRLEN(?targetMotifMatchCigarP22188MF_00208168) - STRLEN(REPLACE(?targetMotifMatchCigarP22188MF_00208168, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1178), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22188MF_00208168, 1, (STRLEN(?targetMotifMatchCigarP22188MF_00208168) - STRLEN(REPLACE(?targetMotifMatchCigarP22188MF_00208168, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1178), '}'), '')))), '[^-]', ''))) AS ?step2179) .
BIND(((?step2179 + ?targetMotifMatchRegionMatchBeginPositionMF_00208169) - 1) AS ?thisPositionOn40) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22188MF_00208166, 1, (STRLEN(?templateMotifCigarP22188MF_00208166) - STRLEN(REPLACE(?templateMotifCigarP22188MF_00208166, CONCAT('^(?:-*[^-]){', STR(((122 - ?templateMotifSequenceMatchBeginPositionP22188167) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1180) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22188MF_00208168, 1, (STRLEN(?targetMotifMatchCigarP22188MF_00208168) - STRLEN(REPLACE(?targetMotifMatchCigarP22188MF_00208168, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1180), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22188MF_00208168, 1, (STRLEN(?targetMotifMatchCigarP22188MF_00208168) - STRLEN(REPLACE(?targetMotifMatchCigarP22188MF_00208168, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1180), '}'), '')))), '[^-]', ''))) AS ?step2181) .
BIND(((?step2181 + ?targetMotifMatchRegionMatchBeginPositionMF_00208169) - 1) AS ?thisPositionOn41) .
BIND(?this AS ?pfs3t182) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfsb37) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfse38) .
FILTER (REGEX('GT[ARNDCQEGHILKMFPSTWYVBZJUOX]GK[ST][ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn40, (?thisPositionOn41 - ?thisPositionOn40)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00208a36')) AS ?annotation36) .
BIND(?this AS ?pfs35) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch187 faldo:location ?templateMotifSequenceMatchRegionP22188188 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP22188190 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP22188MF_00208183 .
?templateMotifSequenceMatchRegionP22188188 faldo:begin ?templateMotifSequenceMatchBeginP22188189 .
?templateMotifSequenceMatchBeginP22188189 faldo:position ?templateMotifSequenceMatchBeginPositionP22188184 ;
faldo:reference isoform:P22188-1 .
?templateMotifSequenceProfileAlignmentOperationP22188190 edam:has_input signature:MF_00208 ;
rdf:type edam:operation_0300 .
?targetMotifMatch191 faldo:location ?targetMotifMatchRegionMatch192 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00208194 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP22188MF_00208185 .
?targetMotifMatchRegionMatch192 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00208193 .
?targetMotifMatchRegionMatchBeginMF_00208193 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00208186 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00208194 edam:has_input signature:MF_00208 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22188MF_00208183, 1, (STRLEN(?templateMotifCigarP22188MF_00208183) - STRLEN(REPLACE(?templateMotifCigarP22188MF_00208183, CONCAT('^(?:-*[^-]){', STR(((44 - ?templateMotifSequenceMatchBeginPositionP22188184) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1195) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22188MF_00208185, 1, (STRLEN(?targetMotifMatchCigarP22188MF_00208185) - STRLEN(REPLACE(?targetMotifMatchCigarP22188MF_00208185, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1195), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22188MF_00208185, 1, (STRLEN(?targetMotifMatchCigarP22188MF_00208185) - STRLEN(REPLACE(?targetMotifMatchCigarP22188MF_00208185, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1195), '}'), '')))), '[^-]', ''))) AS ?step2196) .
BIND(((?step2196 + ?targetMotifMatchRegionMatchBeginPositionMF_00208186) - 1) AS ?thisPositionOn47) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22188MF_00208183, 1, (STRLEN(?templateMotifCigarP22188MF_00208183) - STRLEN(REPLACE(?templateMotifCigarP22188MF_00208183, CONCAT('^(?:-*[^-]){', STR(((46 - ?templateMotifSequenceMatchBeginPositionP22188184) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1197) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22188MF_00208185, 1, (STRLEN(?targetMotifMatchCigarP22188MF_00208185) - STRLEN(REPLACE(?targetMotifMatchCigarP22188MF_00208185, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1197), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22188MF_00208185, 1, (STRLEN(?targetMotifMatchCigarP22188MF_00208185) - STRLEN(REPLACE(?targetMotifMatchCigarP22188MF_00208185, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1197), '}'), '')))), '[^-]', ''))) AS ?step2198) .
BIND(((?step2198 + ?targetMotifMatchRegionMatchBeginPositionMF_00208186) - 1) AS ?thisPositionOn48) .
BIND(?this AS ?pfs3t199) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfsb44) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfse45) .
FILTER (REGEX('H[QRK][AVCT]', SUBSTR(?thisSequenceValue, ?thisPositionOn47, (?thisPositionOn48 - ?thisPositionOn47)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00208a43')) AS ?annotation43) .
BIND(?this AS ?pfs42) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch204 faldo:location ?templateMotifSequenceMatchRegionP22188205 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP22188207 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP22188MF_00208200 .
?templateMotifSequenceMatchRegionP22188205 faldo:begin ?templateMotifSequenceMatchBeginP22188206 .
?templateMotifSequenceMatchBeginP22188206 faldo:position ?templateMotifSequenceMatchBeginPositionP22188201 ;
faldo:reference isoform:P22188-1 .
?templateMotifSequenceProfileAlignmentOperationP22188207 edam:has_input signature:MF_00208 ;
rdf:type edam:operation_0300 .
?targetMotifMatch208 faldo:location ?targetMotifMatchRegionMatch209 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00208211 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP22188MF_00208202 .
?targetMotifMatchRegionMatch209 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00208210 .
?targetMotifMatchRegionMatchBeginMF_00208210 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00208203 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00208211 edam:has_input signature:MF_00208 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22188MF_00208200, 1, (STRLEN(?templateMotifCigarP22188MF_00208200) - STRLEN(REPLACE(?templateMotifCigarP22188MF_00208200, CONCAT('^(?:-*[^-]){', STR(((158 - ?templateMotifSequenceMatchBeginPositionP22188201) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1212) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22188MF_00208202, 1, (STRLEN(?targetMotifMatchCigarP22188MF_00208202) - STRLEN(REPLACE(?targetMotifMatchCigarP22188MF_00208202, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1212), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22188MF_00208202, 1, (STRLEN(?targetMotifMatchCigarP22188MF_00208202) - STRLEN(REPLACE(?targetMotifMatchCigarP22188MF_00208202, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1212), '}'), '')))), '[^-]', ''))) AS ?step2213) .
BIND(((?step2213 + ?targetMotifMatchRegionMatchBeginPositionMF_00208203) - 1) AS ?thisPositionOn54) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22188MF_00208200, 1, (STRLEN(?templateMotifCigarP22188MF_00208200) - STRLEN(REPLACE(?templateMotifCigarP22188MF_00208200, CONCAT('^(?:-*[^-]){', STR(((159 - ?templateMotifSequenceMatchBeginPositionP22188201) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1214) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22188MF_00208202, 1, (STRLEN(?targetMotifMatchCigarP22188MF_00208202) - STRLEN(REPLACE(?targetMotifMatchCigarP22188MF_00208202, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1214), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22188MF_00208202, 1, (STRLEN(?targetMotifMatchCigarP22188MF_00208202) - STRLEN(REPLACE(?targetMotifMatchCigarP22188MF_00208202, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1214), '}'), '')))), '[^-]', ''))) AS ?step2215) .
BIND(((?step2215 + ?targetMotifMatchRegionMatchBeginPositionMF_00208203) - 1) AS ?thisPositionOn55) .
BIND(?this AS ?pfs3t216) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfsb51) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfse52) .
FILTER (REGEX('[TS]T', SUBSTR(?thisSequenceValue, ?thisPositionOn54, (?thisPositionOn55 - ?thisPositionOn54)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00208a50')) AS ?annotation50) .
BIND(?this AS ?pfs49) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch221 faldo:location ?templateMotifSequenceMatchRegionP22188222 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP22188224 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP22188MF_00208217 .
?templateMotifSequenceMatchRegionP22188222 faldo:begin ?templateMotifSequenceMatchBeginP22188223 .
?templateMotifSequenceMatchBeginP22188223 faldo:position ?templateMotifSequenceMatchBeginPositionP22188218 ;
faldo:reference isoform:P22188-1 .
?templateMotifSequenceProfileAlignmentOperationP22188224 edam:has_input signature:MF_00208 ;
rdf:type edam:operation_0300 .
?targetMotifMatch225 faldo:location ?targetMotifMatchRegionMatch226 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00208228 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP22188MF_00208219 .
?targetMotifMatchRegionMatch226 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00208227 .
?targetMotifMatchRegionMatchBeginMF_00208227 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00208220 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00208228 edam:has_input signature:MF_00208 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22188MF_00208217, 1, (STRLEN(?templateMotifCigarP22188MF_00208217) - STRLEN(REPLACE(?templateMotifCigarP22188MF_00208217, CONCAT('^(?:-*[^-]){', STR(((27 - ?templateMotifSequenceMatchBeginPositionP22188218) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1229) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22188MF_00208219, 1, (STRLEN(?targetMotifMatchCigarP22188MF_00208219) - STRLEN(REPLACE(?targetMotifMatchCigarP22188MF_00208219, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1229), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22188MF_00208219, 1, (STRLEN(?targetMotifMatchCigarP22188MF_00208219) - STRLEN(REPLACE(?targetMotifMatchCigarP22188MF_00208219, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1229), '}'), '')))), '[^-]', ''))) AS ?step2230) .
BIND(((?step2230 + ?targetMotifMatchRegionMatchBeginPositionMF_00208220) - 1) AS ?thisPositionOn61) .
BIND(?thisPositionOn61 AS ?thisPositionOn62) .
BIND(?this AS ?pfs3t231) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfsb58) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfse59) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn61, 1) = 'L')) .
BIND(URI(CONCAT(STR(?this), '#MF_00208a57')) AS ?annotation57) .
BIND(?this AS ?pfs56) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch236 faldo:location ?templateMotifSequenceMatchRegionP22188237 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP22188239 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP22188MF_00208232 .
?templateMotifSequenceMatchRegionP22188237 faldo:begin ?templateMotifSequenceMatchBeginP22188238 .
?templateMotifSequenceMatchBeginP22188238 faldo:position ?templateMotifSequenceMatchBeginPositionP22188233 ;
faldo:reference isoform:P22188-1 .
?templateMotifSequenceProfileAlignmentOperationP22188239 edam:has_input signature:MF_00208 ;
rdf:type edam:operation_0300 .
?targetMotifMatch240 faldo:location ?targetMotifMatchRegionMatch241 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00208243 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP22188MF_00208234 .
?targetMotifMatchRegionMatch241 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00208242 .
?targetMotifMatchRegionMatchBeginMF_00208242 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00208235 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00208243 edam:has_input signature:MF_00208 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22188MF_00208232, 1, (STRLEN(?templateMotifCigarP22188MF_00208232) - STRLEN(REPLACE(?templateMotifCigarP22188MF_00208232, CONCAT('^(?:-*[^-]){', STR(((29 - ?templateMotifSequenceMatchBeginPositionP22188233) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1244) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22188MF_00208234, 1, (STRLEN(?targetMotifMatchCigarP22188MF_00208234) - STRLEN(REPLACE(?targetMotifMatchCigarP22188MF_00208234, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1244), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22188MF_00208234, 1, (STRLEN(?targetMotifMatchCigarP22188MF_00208234) - STRLEN(REPLACE(?targetMotifMatchCigarP22188MF_00208234, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1244), '}'), '')))), '[^-]', ''))) AS ?step2245) .
BIND(((?step2245 + ?targetMotifMatchRegionMatchBeginPositionMF_00208235) - 1) AS ?thisPositionOn68) .
BIND(?thisPositionOn68 AS ?thisPositionOn69) .
BIND(?this AS ?pfs3t246) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn68))) AS ?pfsb65) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn69))) AS ?pfse66) .
FILTER (REGEX('[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn68, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00208a64')) AS ?annotation64) .
BIND(?this AS ?pfs63) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch251 faldo:location ?templateMotifSequenceMatchRegionP22188252 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP22188254 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP22188MF_00208247 .
?templateMotifSequenceMatchRegionP22188252 faldo:begin ?templateMotifSequenceMatchBeginP22188253 .
?templateMotifSequenceMatchBeginP22188253 faldo:position ?templateMotifSequenceMatchBeginPositionP22188248 ;
faldo:reference isoform:P22188-1 .
?templateMotifSequenceProfileAlignmentOperationP22188254 edam:has_input signature:MF_00208 ;
rdf:type edam:operation_0300 .
?targetMotifMatch255 faldo:location ?targetMotifMatchRegionMatch256 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00208258 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP22188MF_00208249 .
?targetMotifMatchRegionMatch256 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00208257 .
?targetMotifMatchRegionMatchBeginMF_00208257 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00208250 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00208258 edam:has_input signature:MF_00208 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22188MF_00208247, 1, (STRLEN(?templateMotifCigarP22188MF_00208247) - STRLEN(REPLACE(?templateMotifCigarP22188MF_00208247, CONCAT('^(?:-*[^-]){', STR(((157 - ?templateMotifSequenceMatchBeginPositionP22188248) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1259) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22188MF_00208249, 1, (STRLEN(?targetMotifMatchCigarP22188MF_00208249) - STRLEN(REPLACE(?targetMotifMatchCigarP22188MF_00208249, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1259), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22188MF_00208249, 1, (STRLEN(?targetMotifMatchCigarP22188MF_00208249) - STRLEN(REPLACE(?targetMotifMatchCigarP22188MF_00208249, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1259), '}'), '')))), '[^-]', ''))) AS ?step2260) .
BIND(((?step2260 + ?targetMotifMatchRegionMatchBeginPositionMF_00208250) - 1) AS ?thisPositionOn75) .
BIND(?thisPositionOn75 AS ?thisPositionOn76) .
BIND(?this AS ?pfs3t261) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn75))) AS ?pfsb72) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn76))) AS ?pfse73) .
FILTER (REGEX('[NQ]', SUBSTR(?thisSequenceValue, ?thisPositionOn75, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00208a71')) AS ?annotation71) .
BIND(?this AS ?pfs70) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch266 faldo:location ?templateMotifSequenceMatchRegionP22188267 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP22188269 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP22188MF_00208262 .
?templateMotifSequenceMatchRegionP22188267 faldo:begin ?templateMotifSequenceMatchBeginP22188268 .
?templateMotifSequenceMatchBeginP22188268 faldo:position ?templateMotifSequenceMatchBeginPositionP22188263 ;
faldo:reference isoform:P22188-1 .
?templateMotifSequenceProfileAlignmentOperationP22188269 edam:has_input signature:MF_00208 ;
rdf:type edam:operation_0300 .
?targetMotifMatch270 faldo:location ?targetMotifMatchRegionMatch271 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00208273 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP22188MF_00208264 .
?targetMotifMatchRegionMatch271 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00208272 .
?targetMotifMatchRegionMatchBeginMF_00208272 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00208265 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00208273 edam:has_input signature:MF_00208 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22188MF_00208262, 1, (STRLEN(?templateMotifCigarP22188MF_00208262) - STRLEN(REPLACE(?templateMotifCigarP22188MF_00208262, CONCAT('^(?:-*[^-]){', STR(((185 - ?templateMotifSequenceMatchBeginPositionP22188263) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1274) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22188MF_00208264, 1, (STRLEN(?targetMotifMatchCigarP22188MF_00208264) - STRLEN(REPLACE(?targetMotifMatchCigarP22188MF_00208264, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1274), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22188MF_00208264, 1, (STRLEN(?targetMotifMatchCigarP22188MF_00208264) - STRLEN(REPLACE(?targetMotifMatchCigarP22188MF_00208264, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1274), '}'), '')))), '[^-]', ''))) AS ?step2275) .
BIND(((?step2275 + ?targetMotifMatchRegionMatchBeginPositionMF_00208265) - 1) AS ?thisPositionOn82) .
BIND(?thisPositionOn82 AS ?thisPositionOn83) .
BIND(?this AS ?pfs3t276) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn82))) AS ?pfsb79) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn83))) AS ?pfse80) .
FILTER (REGEX('[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn82, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00208a78')) AS ?annotation78) .
BIND(?this AS ?pfs77) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch281 faldo:location ?templateMotifSequenceMatchRegionP22188282 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP22188284 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP22188MF_00208277 .
?templateMotifSequenceMatchRegionP22188282 faldo:begin ?templateMotifSequenceMatchBeginP22188283 .
?templateMotifSequenceMatchBeginP22188283 faldo:position ?templateMotifSequenceMatchBeginPositionP22188278 ;
faldo:reference isoform:P22188-1 .
?templateMotifSequenceProfileAlignmentOperationP22188284 edam:has_input signature:MF_00208 ;
rdf:type edam:operation_0300 .
?targetMotifMatch285 faldo:location ?targetMotifMatchRegionMatch286 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00208288 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP22188MF_00208279 .
?targetMotifMatchRegionMatch286 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00208287 .
?targetMotifMatchRegionMatchBeginMF_00208287 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00208280 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00208288 edam:has_input signature:MF_00208 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22188MF_00208277, 1, (STRLEN(?templateMotifCigarP22188MF_00208277) - STRLEN(REPLACE(?templateMotifCigarP22188MF_00208277, CONCAT('^(?:-*[^-]){', STR(((191 - ?templateMotifSequenceMatchBeginPositionP22188278) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1289) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22188MF_00208279, 1, (STRLEN(?targetMotifMatchCigarP22188MF_00208279) - STRLEN(REPLACE(?targetMotifMatchCigarP22188MF_00208279, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1289), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22188MF_00208279, 1, (STRLEN(?targetMotifMatchCigarP22188MF_00208279) - STRLEN(REPLACE(?targetMotifMatchCigarP22188MF_00208279, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1289), '}'), '')))), '[^-]', ''))) AS ?step2290) .
BIND(((?step2290 + ?targetMotifMatchRegionMatchBeginPositionMF_00208280) - 1) AS ?thisPositionOn89) .
BIND(?thisPositionOn89 AS ?thisPositionOn90) .
BIND(?this AS ?pfs3t291) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn89))) AS ?pfsb86) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn90))) AS ?pfse87) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn89, 1) = 'Q')) .
BIND(URI(CONCAT(STR(?this), '#MF_00208a85')) AS ?annotation85) .
BIND(?this AS ?pfs84) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch296 faldo:location ?templateMotifSequenceMatchRegionP22188297 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP22188299 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP22188MF_00208292 .
?templateMotifSequenceMatchRegionP22188297 faldo:begin ?templateMotifSequenceMatchBeginP22188298 .
?templateMotifSequenceMatchBeginP22188298 faldo:position ?templateMotifSequenceMatchBeginPositionP22188293 ;
faldo:reference isoform:P22188-1 .
?templateMotifSequenceProfileAlignmentOperationP22188299 edam:has_input signature:MF_00208 ;
rdf:type edam:operation_0300 .
?targetMotifMatch300 faldo:location ?targetMotifMatchRegionMatch301 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00208303 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP22188MF_00208294 .
?targetMotifMatchRegionMatch301 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00208302 .
?targetMotifMatchRegionMatchBeginMF_00208302 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00208295 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00208303 edam:has_input signature:MF_00208 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22188MF_00208292, 1, (STRLEN(?templateMotifCigarP22188MF_00208292) - STRLEN(REPLACE(?templateMotifCigarP22188MF_00208292, CONCAT('^(?:-*[^-]){', STR(((193 - ?templateMotifSequenceMatchBeginPositionP22188293) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1304) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22188MF_00208294, 1, (STRLEN(?targetMotifMatchCigarP22188MF_00208294) - STRLEN(REPLACE(?targetMotifMatchCigarP22188MF_00208294, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1304), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22188MF_00208294, 1, (STRLEN(?targetMotifMatchCigarP22188MF_00208294) - STRLEN(REPLACE(?targetMotifMatchCigarP22188MF_00208294, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1304), '}'), '')))), '[^-]', ''))) AS ?step2305) .
BIND(((?step2305 + ?targetMotifMatchRegionMatchBeginPositionMF_00208295) - 1) AS ?thisPositionOn96) .
BIND(?thisPositionOn96 AS ?thisPositionOn97) .
BIND(?this AS ?pfs3t306) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn96))) AS ?pfsb93) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn97))) AS ?pfse94) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn96, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_00208a92')) AS ?annotation92) .
BIND(?this AS ?pfs91) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch311 faldo:location ?templateMotifSequenceMatchRegionP22188312 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP22188314 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP22188MF_00208307 .
?templateMotifSequenceMatchRegionP22188312 faldo:begin ?templateMotifSequenceMatchBeginP22188313 .
?templateMotifSequenceMatchBeginP22188313 faldo:position ?templateMotifSequenceMatchBeginPositionP22188308 ;
faldo:reference isoform:P22188-1 .
?templateMotifSequenceProfileAlignmentOperationP22188314 edam:has_input signature:MF_00208 ;
rdf:type edam:operation_0300 .
?targetMotifMatch315 faldo:location ?targetMotifMatchRegionMatch316 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00208318 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP22188MF_00208309 .
?targetMotifMatchRegionMatch316 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00208317 .
?targetMotifMatchRegionMatchBeginMF_00208317 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00208310 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00208318 edam:has_input signature:MF_00208 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22188MF_00208307, 1, (STRLEN(?templateMotifCigarP22188MF_00208307) - STRLEN(REPLACE(?templateMotifCigarP22188MF_00208307, CONCAT('^(?:-*[^-]){', STR(((225 - ?templateMotifSequenceMatchBeginPositionP22188308) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1319) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22188MF_00208309, 1, (STRLEN(?targetMotifMatchCigarP22188MF_00208309) - STRLEN(REPLACE(?targetMotifMatchCigarP22188MF_00208309, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1319), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22188MF_00208309, 1, (STRLEN(?targetMotifMatchCigarP22188MF_00208309) - STRLEN(REPLACE(?targetMotifMatchCigarP22188MF_00208309, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1319), '}'), '')))), '[^-]', ''))) AS ?step2320) .
BIND(((?step2320 + ?targetMotifMatchRegionMatchBeginPositionMF_00208310) - 1) AS ?thisPositionOn102) .
BIND(?thisPositionOn102 AS ?thisPositionOn103) .
BIND(?this AS ?pfs3t321) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn102))) AS ?pfsb100) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn103))) AS ?pfse101) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn102, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_00208a99')) AS ?annotation99) .
BIND(?this AS ?pfs98) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch326 faldo:location ?templateMotifSequenceMatchRegionP22188327 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP22188329 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP22188MF_00208322 .
?templateMotifSequenceMatchRegionP22188327 faldo:begin ?templateMotifSequenceMatchBeginP22188328 .
?templateMotifSequenceMatchBeginP22188328 faldo:position ?templateMotifSequenceMatchBeginPositionP22188323 ;
faldo:reference isoform:P22188-1 .
?templateMotifSequenceProfileAlignmentOperationP22188329 edam:has_input signature:MF_00208 ;
rdf:type edam:operation_0300 .
?targetMotifMatch330 faldo:location ?targetMotifMatchRegionMatch331 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00208333 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP22188MF_00208324 .
?targetMotifMatchRegionMatch331 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00208332 .
?targetMotifMatchRegionMatchBeginMF_00208332 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00208325 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00208333 edam:has_input signature:MF_00208 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22188MF_00208322, 1, (STRLEN(?templateMotifCigarP22188MF_00208322) - STRLEN(REPLACE(?templateMotifCigarP22188MF_00208322, CONCAT('^(?:-*[^-]){', STR(((414 - ?templateMotifSequenceMatchBeginPositionP22188323) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1334) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22188MF_00208324, 1, (STRLEN(?targetMotifMatchCigarP22188MF_00208324) - STRLEN(REPLACE(?targetMotifMatchCigarP22188MF_00208324, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1334), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22188MF_00208324, 1, (STRLEN(?targetMotifMatchCigarP22188MF_00208324) - STRLEN(REPLACE(?targetMotifMatchCigarP22188MF_00208324, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1334), '}'), '')))), '[^-]', ''))) AS ?step2335) .
BIND(((?step2335 + ?targetMotifMatchRegionMatchBeginPositionMF_00208325) - 1) AS ?thisPositionOn109) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22188MF_00208322, 1, (STRLEN(?templateMotifCigarP22188MF_00208322) - STRLEN(REPLACE(?templateMotifCigarP22188MF_00208322, CONCAT('^(?:-*[^-]){', STR(((417 - ?templateMotifSequenceMatchBeginPositionP22188323) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1336) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22188MF_00208324, 1, (STRLEN(?targetMotifMatchCigarP22188MF_00208324) - STRLEN(REPLACE(?targetMotifMatchCigarP22188MF_00208324, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1336), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22188MF_00208324, 1, (STRLEN(?targetMotifMatchCigarP22188MF_00208324) - STRLEN(REPLACE(?targetMotifMatchCigarP22188MF_00208324, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1336), '}'), '')))), '[^-]', ''))) AS ?step2337) .
BIND(((?step2337 + ?targetMotifMatchRegionMatchBeginPositionMF_00208325) - 1) AS ?thisPositionOn110) .
BIND(?this AS ?pfs4t338) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn109))) AS ?pfsb106) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn110))) AS ?pfse107) .
FILTER (REGEX('DN[ARNDCQEGHILKMFPSTWYVBZJUOX]R', SUBSTR(?thisSequenceValue, ?thisPositionOn109, (?thisPositionOn110 - ?thisPositionOn109)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00208a105')) AS ?annotation105) .
BIND(?this AS ?pfs104) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch343 faldo:location ?templateMotifSequenceMatchRegionP22188344 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP22188346 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP22188MF_00208339 .
?templateMotifSequenceMatchRegionP22188344 faldo:begin ?templateMotifSequenceMatchBeginP22188345 .
?templateMotifSequenceMatchBeginP22188345 faldo:position ?templateMotifSequenceMatchBeginPositionP22188340 ;
faldo:reference isoform:P22188-1 .
?templateMotifSequenceProfileAlignmentOperationP22188346 edam:has_input signature:MF_00208 ;
rdf:type edam:operation_0300 .
?targetMotifMatch347 faldo:location ?targetMotifMatchRegionMatch348 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00208350 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP22188MF_00208341 .
?targetMotifMatchRegionMatch348 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00208349 .
?targetMotifMatchRegionMatchBeginMF_00208349 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00208342 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00208350 edam:has_input signature:MF_00208 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22188MF_00208339, 1, (STRLEN(?templateMotifCigarP22188MF_00208339) - STRLEN(REPLACE(?templateMotifCigarP22188MF_00208339, CONCAT('^(?:-*[^-]){', STR(((390 - ?templateMotifSequenceMatchBeginPositionP22188340) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1351) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22188MF_00208341, 1, (STRLEN(?targetMotifMatchCigarP22188MF_00208341) - STRLEN(REPLACE(?targetMotifMatchCigarP22188MF_00208341, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1351), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22188MF_00208341, 1, (STRLEN(?targetMotifMatchCigarP22188MF_00208341) - STRLEN(REPLACE(?targetMotifMatchCigarP22188MF_00208341, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1351), '}'), '')))), '[^-]', ''))) AS ?step2352) .
BIND(((?step2352 + ?targetMotifMatchRegionMatchBeginPositionMF_00208342) - 1) AS ?thisPositionOn116) .
BIND(?thisPositionOn116 AS ?thisPositionOn117) .
BIND(?this AS ?pfs4t353) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn116))) AS ?pfsb113) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn117))) AS ?pfse114) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn116, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_00208a112')) AS ?annotation112) .
BIND(?this AS ?pfs111) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch358 faldo:location ?templateMotifSequenceMatchRegionP22188359 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP22188361 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP22188MF_00208354 .
?templateMotifSequenceMatchRegionP22188359 faldo:begin ?templateMotifSequenceMatchBeginP22188360 .
?templateMotifSequenceMatchBeginP22188360 faldo:position ?templateMotifSequenceMatchBeginPositionP22188355 ;
faldo:reference isoform:P22188-1 .
?templateMotifSequenceProfileAlignmentOperationP22188361 edam:has_input signature:MF_00208 ;
rdf:type edam:operation_0300 .
?targetMotifMatch362 faldo:location ?targetMotifMatchRegionMatch363 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00208365 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP22188MF_00208356 .
?targetMotifMatchRegionMatch363 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00208364 .
?targetMotifMatchRegionMatchBeginMF_00208364 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00208357 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00208365 edam:has_input signature:MF_00208 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22188MF_00208354, 1, (STRLEN(?templateMotifCigarP22188MF_00208354) - STRLEN(REPLACE(?templateMotifCigarP22188MF_00208354, CONCAT('^(?:-*[^-]){', STR(((465 - ?templateMotifSequenceMatchBeginPositionP22188355) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1366) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22188MF_00208356, 1, (STRLEN(?targetMotifMatchCigarP22188MF_00208356) - STRLEN(REPLACE(?targetMotifMatchCigarP22188MF_00208356, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1366), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22188MF_00208356, 1, (STRLEN(?targetMotifMatchCigarP22188MF_00208356) - STRLEN(REPLACE(?targetMotifMatchCigarP22188MF_00208356, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1366), '}'), '')))), '[^-]', ''))) AS ?step2367) .
BIND(((?step2367 + ?targetMotifMatchRegionMatchBeginPositionMF_00208357) - 1) AS ?thisPositionOn123) .
BIND(?thisPositionOn123 AS ?thisPositionOn124) .
BIND(?this AS ?pfs4t368) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn123))) AS ?pfsb120) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn124))) AS ?pfse121) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn123, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_00208a119')) AS ?annotation119) .
BIND(?this AS ?pfs118) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch373 faldo:location ?templateMotifSequenceMatchRegionP22188374 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP22188376 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP22188MF_00208369 .
?templateMotifSequenceMatchRegionP22188374 faldo:begin ?templateMotifSequenceMatchBeginP22188375 .
?templateMotifSequenceMatchBeginP22188375 faldo:position ?templateMotifSequenceMatchBeginPositionP22188370 ;
faldo:reference isoform:P22188-1 .
?templateMotifSequenceProfileAlignmentOperationP22188376 edam:has_input signature:MF_00208 ;
rdf:type edam:operation_0300 .
?targetMotifMatch377 faldo:location ?targetMotifMatchRegionMatch378 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00208380 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP22188MF_00208371 .
?targetMotifMatchRegionMatch378 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00208379 .
?targetMotifMatchRegionMatchBeginMF_00208379 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00208372 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00208380 edam:has_input signature:MF_00208 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22188MF_00208369, 1, (STRLEN(?templateMotifCigarP22188MF_00208369) - STRLEN(REPLACE(?templateMotifCigarP22188MF_00208369, CONCAT('^(?:-*[^-]){', STR(((469 - ?templateMotifSequenceMatchBeginPositionP22188370) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1381) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22188MF_00208371, 1, (STRLEN(?targetMotifMatchCigarP22188MF_00208371) - STRLEN(REPLACE(?targetMotifMatchCigarP22188MF_00208371, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1381), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22188MF_00208371, 1, (STRLEN(?targetMotifMatchCigarP22188MF_00208371) - STRLEN(REPLACE(?targetMotifMatchCigarP22188MF_00208371, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1381), '}'), '')))), '[^-]', ''))) AS ?step2382) .
BIND(((?step2382 + ?targetMotifMatchRegionMatchBeginPositionMF_00208372) - 1) AS ?thisPositionOn130) .
BIND(?thisPositionOn130 AS ?thisPositionOn131) .
BIND(?this AS ?pfs4t383) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn130))) AS ?pfsb127) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn131))) AS ?pfse128) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn130, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_00208a126')) AS ?annotation126) .
BIND(?this AS ?pfs125) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag384) .
BIND(URI(CONCAT(STR(?this), '#MF_00208a8')) AS ?name8) .
BIND(URI(CONCAT(STR(?this), '#MF_00208a9')) AS ?name9) .
BIND(URI(CONCAT(STR(?this), '#MF_00208a10')) AS ?name10) .
BIND(URI(CONCAT(STR(?this), '#MF_00208a11')) AS ?name11) .
BIND(URI(CONCAT(STR(?this), '#MF_00208a12')) AS ?name12) .
BIND(URI(CONCAT(STR(?this), '#MF_00208a13')) AS ?name13) .
}
BIND(IF(BOUND(?tagFT_5), ?caseWithTag384, ?UNBOUND_VARIABLE) AS ?case7) .
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag385) .
BIND(URI(CONCAT(STR(?this), '#MF_00208a15')) AS ?name15) .
BIND(URI(CONCAT(STR(?this), '#MF_00208a16')) AS ?name16) .
BIND(URI(CONCAT(STR(?this), '#MF_00208a17')) AS ?name17) .
BIND(URI(CONCAT(STR(?this), '#MF_00208a18')) AS ?name18) .
BIND(URI(CONCAT(STR(?this), '#MF_00208a19')) AS ?name19) .
}
BIND(IF((BOUND(?tagFT_1) || BOUND(?tagFT_5)), ?caseWithTag385, ?UNBOUND_VARIABLE) AS ?case14) .
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag386) .
BIND(URI(CONCAT(STR(?this), '#MF_00208a21')) AS ?name21) .
BIND(URI(CONCAT(STR(?this), '#MF_00208a22')) AS ?name22) .
}
BIND(IF((BOUND(?tagFT_1) || BOUND(?tagFT_5)), ?caseWithTag386, ?UNBOUND_VARIABLE) AS ?case20) .
}
"xsd:string |
