| http://purl.uniprot.org/unirules/MF_01166#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:407725 up:source unirule:MF_01166 .
_:407726 up:ecName '2.1.2.13' ;
up:fullName 'UDP-4-amino-4-deoxy-L-arabinose formyltransferase' ;
rdf:type up:Structured_Name .
_:407727 up:fullName 'ArnAFT' ;
rdf:type up:Structured_Name .
_:407728 up:fullName 'UDP-L-Ara4N formyltransferase' ;
rdf:type up:Structured_Name .
_:407729 up:source unirule:MF_01166 .
_:407730 up:ecName '1.1.1.305' ;
up:fullName 'UDP-glucuronic acid oxidase, UDP-4-keto-hexauronic acid decarboxylating' ;
rdf:type up:Structured_Name .
_:407731 up:fullName 'ArnADH' ;
rdf:type up:Structured_Name .
_:407732 up:fullName 'UDP-GlcUA decarboxylase' ;
rdf:type up:Structured_Name .
_:407733 up:fullName 'UDP-glucuronic acid dehydrogenase' ;
rdf:type up:Structured_Name .
_:407734 up:source unirule:MF_01166 .
_:407735 up:source unirule:MF_01166 .
_:407736 up:source unirule:MF_01166 .
_:407737 up:source unirule:MF_01166 .
_:407738 up:source unirule:MF_01166 .
_:407739 up:source unirule:MF_01166 .
_:407740 up:source unirule:MF_01166 .
_:407741 up:source unirule:MF_01166 .
_:407742 up:source unirule:MF_01166 .
_:407743 up:source unirule:MF_01166 .
_:407744 up:source unirule:MF_01166 .
_:407745 up:source unirule:MF_01166 .
_:407746 up:source unirule:MF_01166 .
_:407747 up:source unirule:MF_01166 .
_:407748 up:source unirule:MF_01166 .
_:407749 up:source unirule:MF_01166 .
_:407750 up:source unirule:MF_01166 .
_:407751 up:source unirule:MF_01166 .
_:407752 up:source unirule:MF_01166 .
_:407753 up:source unirule:MF_01166 .
_:407754 up:source unirule:MF_01166 .
_:407755 up:source unirule:MF_01166 .
_:407756 up:source unirule:MF_01166 .
_:407757 up:source unirule:MF_01166 .
_:407758 up:source unirule:MF_01166 .
_:407759 up:source unirule:MF_01166 .
_:407760 up:source unirule:MF_01166 .
_:407761 up:source unirule:MF_01166 .
_:407762 up:source unirule:MF_01166 .
_:407763 up:source unirule:MF_01166 .
_:407764 up:source unirule:MF_01166 .
_:407765 up:source unirule:MF_01166 .
_:407766 up:source unirule:MF_01166 .
_:407767 up:source unirule:MF_01166 .
_:407768 up:source unirule:MF_01166 .
_:407769 up:source unirule:MF_01166 .
_:407770 up:source unirule:MF_01166 .
_:407771 up:source unirule:MF_01166 .
_:407772 up:source unirule:MF_01166 .
_:407773 up:source unirule:MF_01166 .
_:407774 up:source unirule:MF_01166 .
_:407775 up:source unirule:MF_01166 .
_:407776 up:source unirule:MF_01166 .
?this up:annotation ?annotation4 ,
?annotation5 ,
?annotation7 ,
?annotation9 ,
?annotation10 ,
?annotation11 ,
?annotation12 ,
?annotation13 ,
?annotation14 ;
up:classifiedWith GO:0009103 ,
GO:0016616 ,
GO:0016742 ,
GO:0046493 ,
keyword:441 ,
keyword:443 ,
keyword:444 ,
keyword:448 ,
keyword:46 ,
keyword:511 ,
keyword:520 ,
keyword:560 ,
keyword:808 ;
up:domain ?namedpart1 ,
?namedpart2 ;
up:recommendedName ?name0 .
?name0 up:fullName 'Bifunctional polymyxin resistance protein ArnA' ;
rdf:type up:Structured_Name .
?namedpart1 up:alternativeName _:407727 ,
_:407728 ;
up:recommendedName _:407726 .
?namedpart2 up:alternativeName _:407731 ,
_:407732 ,
_:407733 ;
up:recommendedName _:407730 .
?gene3 skos:prefLabel 'arnA' .
?annotation4 a up:Function_Annotation ;
rdfs:comment 'Bifunctional enzyme that catalyzes the oxidative decarboxylation of UDP-glucuronic acid (UDP-GlcUA) to UDP-4-keto-arabinose (UDP-Ara4O) and the addition of a formyl group to UDP-4-amino-4-deoxy-L-arabinose (UDP-L-Ara4N) to form UDP-L-4-formamido-arabinose (UDP-L-Ara4FN). The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides.' .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity ;
up:enzymeClass .
?annotation7 up:activity ?activity8 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity8 up:catalyticActivity ;
up:enzymeClass .
?annotation9 a up:Pathway_Annotation ;
rdfs:comment 'Nucleotide-sugar biosynthesis; UDP-4-deoxy-4-formamido-beta-L-arabinose biosynthesis; UDP-4-deoxy-4-formamido-beta-L-arabinose from UDP-alpha-D-glucuronate: step 1/3.' .
?annotation10 a up:Pathway_Annotation ;
rdfs:comment 'Nucleotide-sugar biosynthesis; UDP-4-deoxy-4-formamido-beta-L-arabinose biosynthesis; UDP-4-deoxy-4-formamido-beta-L-arabinose from UDP-alpha-D-glucuronate: step 3/3.' .
?annotation11 a up:Pathway_Annotation ;
rdfs:comment 'Bacterial outer membrane biogenesis; lipopolysaccharide biosynthesis.' .
?annotation12 a up:Subunit_Annotation ;
rdfs:comment 'Homohexamer, formed by a dimer of trimers.' .
?annotation13 a up:Similarity_Annotation ;
rdfs:comment 'In the N-terminal section; belongs to the Fmt family. UDP-L-Ara4N formyltransferase subfamily.' .
?annotation14 a up:Similarity_Annotation ;
rdfs:comment 'In the C-terminal section; belongs to the NAD(P)-dependent epimerase/dehydratase family. UDP-glucuronic acid decarboxylase subfamily.' .
?pfs15 up:annotation ?annotation16 .
?annotation16 faldo:begin ?pfsb17 ;
faldo:end ?pfse18 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Formyltransferase ArnAFT' .
?pfsb17 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfse18 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfs21 up:annotation ?annotation22 .
?annotation22 faldo:begin ?pfsb23 ;
faldo:end ?pfse24 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Dehydrogenase ArnADH' .
?pfsb23 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?pfse24 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?pfs27 up:annotation ?annotation28 .
?annotation28 faldo:begin ?pfsb29 ;
faldo:end ?pfse30 ;
up:ligand ?ligand31 ;
rdf:type up:Binding_Site_Annotation .
?pfsb29 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?pfse30 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?ligand31 rdfs:subClassOf chebi:57540 .
?pfs34 up:annotation ?annotation35 .
?annotation35 faldo:begin ?pfsb36 ;
faldo:end ?pfse37 ;
up:ligand ?ligand38 ;
rdf:type up:Binding_Site_Annotation .
?pfsb36 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?pfse37 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?ligand38 rdfs:subClassOf chebi:195366 .
?pfs41 up:annotation ?annotation42 .
?annotation42 faldo:begin ?pfsb43 ;
faldo:end ?pfse44 ;
up:ligand ?ligand45 ;
rdf:type up:Binding_Site_Annotation .
?pfsb43 faldo:position ?thisPositionOn46 ;
rdf:type faldo:ExactPosition .
?pfse44 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?ligand45 rdfs:subClassOf chebi:195366 .
?pfs48 up:annotation ?annotation49 .
?annotation49 faldo:begin ?pfsb50 ;
faldo:end ?pfse51 ;
up:ligand ?ligand52 ;
rdf:type up:Binding_Site_Annotation .
?pfsb50 faldo:position ?thisPositionOn53 ;
rdf:type faldo:ExactPosition .
?pfse51 faldo:position ?thisPositionOn54 ;
rdf:type faldo:ExactPosition .
?ligand52 rdfs:subClassOf chebi:58052 .
?pfs55 up:annotation ?annotation56 .
?annotation56 faldo:begin ?pfsb57 ;
faldo:end ?pfse58 ;
up:ligand ?ligand59 ;
rdf:type up:Binding_Site_Annotation .
?pfsb57 faldo:position ?thisPositionOn60 ;
rdf:type faldo:ExactPosition .
?pfse58 faldo:position ?thisPositionOn61 ;
rdf:type faldo:ExactPosition .
?ligand59 rdfs:subClassOf chebi:58052 .
?pfs62 up:annotation ?annotation63 .
?annotation63 faldo:begin ?pfsb64 ;
faldo:end ?pfse65 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton donor; for formyltransferase activity' .
?pfsb64 faldo:position ?thisPositionOn66 ;
rdf:type faldo:ExactPosition .
?pfse65 faldo:position ?thisPositionOn67 ;
rdf:type faldo:ExactPosition .
?pfs68 up:annotation ?annotation69 .
?annotation69 faldo:begin ?pfsb70 ;
faldo:end ?pfse71 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor; for decarboxylase activity' .
?pfsb70 faldo:position ?thisPositionOn72 ;
rdf:type faldo:ExactPosition .
?pfse71 faldo:position ?thisPositionOn73 ;
rdf:type faldo:ExactPosition .
?pfs74 up:annotation ?annotation75 .
?annotation75 faldo:begin ?pfsb76 ;
faldo:end ?pfse77 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton donor; for decarboxylase activity' .
?pfsb76 faldo:position ?thisPositionOn78 ;
rdf:type faldo:ExactPosition .
?pfse77 faldo:position ?thisPositionOn79 ;
rdf:type faldo:ExactPosition .
?pfs80 up:annotation ?annotation81 .
?annotation81 faldo:begin ?pfsb82 ;
faldo:end ?pfse83 ;
up:ligand ?ligand84 ;
rdf:type up:Binding_Site_Annotation .
?pfsb82 faldo:position ?thisPositionOn85 ;
rdf:type faldo:ExactPosition .
?pfse83 faldo:position ?thisPositionOn86 ;
rdf:type faldo:ExactPosition .
?ligand84 rdfs:subClassOf chebi:195366 .
?pfs87 up:annotation ?annotation88 .
?annotation88 faldo:begin ?pfsb89 ;
faldo:end ?pfse90 ;
up:ligand ?ligand91 ;
rdf:type up:Binding_Site_Annotation .
?pfsb89 faldo:position ?thisPositionOn92 ;
rdf:type faldo:ExactPosition .
?pfse90 faldo:position ?thisPositionOn93 ;
rdf:type faldo:ExactPosition .
?ligand91 rdfs:subClassOf chebi:57540 .
?pfs94 up:annotation ?annotation95 .
?annotation95 faldo:begin ?pfsb96 ;
faldo:end ?pfse97 ;
up:ligand ?ligand98 ;
rdf:type up:Binding_Site_Annotation .
?pfsb96 faldo:position ?thisPositionOn99 ;
rdf:type faldo:ExactPosition .
?pfse97 faldo:position ?thisPositionOn100 ;
rdf:type faldo:ExactPosition .
?ligand98 rdfs:subClassOf chebi:58052 .
?pfs101 up:annotation ?annotation102 .
?annotation102 faldo:begin ?pfsb103 ;
faldo:end ?pfse104 ;
up:ligand ?ligand105 ;
rdf:type up:Binding_Site_Annotation .
?pfsb103 faldo:position ?thisPositionOn106 ;
rdf:type faldo:ExactPosition .
?pfse104 faldo:position ?thisPositionOn107 ;
rdf:type faldo:ExactPosition .
?ligand105 rdfs:subClassOf chebi:58052 .
?pfs108 up:annotation ?annotation109 .
?annotation109 faldo:begin ?pfsb110 ;
faldo:end ?pfse111 ;
up:ligand ?ligand112 ;
rdf:type up:Binding_Site_Annotation .
?pfsb110 faldo:position ?thisPositionOn113 ;
rdf:type faldo:ExactPosition .
?pfse111 faldo:position ?thisPositionOn114 ;
rdf:type faldo:ExactPosition .
?ligand112 rdfs:subClassOf chebi:58052 .
?pfs115 up:annotation ?annotation116 .
?annotation116 faldo:begin ?pfsb117 ;
faldo:end ?pfse118 ;
up:ligand ?ligand119 ;
rdf:type up:Binding_Site_Annotation .
?pfsb117 faldo:position ?thisPositionOn120 ;
rdf:type faldo:ExactPosition .
?pfse118 faldo:position ?thisPositionOn121 ;
rdf:type faldo:ExactPosition .
?ligand119 rdfs:subClassOf chebi:58052 .
?pfs122 up:annotation ?annotation123 .
?annotation123 faldo:begin ?pfsb124 ;
faldo:end ?pfse125 ;
up:ligand ?ligand126 ;
rdf:type up:Binding_Site_Annotation .
?pfsb124 faldo:position ?thisPositionOn127 ;
rdf:type faldo:ExactPosition .
?pfse125 faldo:position ?thisPositionOn128 ;
rdf:type faldo:ExactPosition .
?ligand126 rdfs:subClassOf chebi:58052 .
?pfs129 up:annotation ?annotation130 .
?annotation130 faldo:begin ?pfsb131 ;
faldo:end ?pfse132 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Transition state stabilizer' .
?pfsb131 faldo:position ?thisPositionOn133 ;
rdf:type faldo:ExactPosition .
?pfse132 faldo:position ?thisPositionOn134 ;
rdf:type faldo:ExactPosition .
?pfs135 up:annotation ?annotation136 .
?annotation136 faldo:begin ?pfsb137 ;
faldo:end ?pfse138 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Raises pKa of active site His' .
?pfsb137 faldo:position ?thisPositionOn139 ;
rdf:type faldo:ExactPosition .
?pfse138 faldo:position ?thisPositionOn140 ;
rdf:type faldo:ExactPosition .
_:407777 a rdf:Statement ;
up:attribution _:407725 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:407778 a rdf:Statement ;
up:attribution _:407729 ;
rdf:subject ?this ;
rdf:predicate up:domain ;
rdf:object ?namedpart1 .
_:407779 a rdf:Statement ;
up:attribution _:407734 ;
rdf:subject ?this ;
rdf:predicate up:domain ;
rdf:object ?namedpart2 .
_:407780 a rdf:Statement ;
up:attribution _:407735 ;
rdf:subject ?gene3 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene3 .
_:407781 a rdf:Statement ;
up:attribution _:407736 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:407782 a rdf:Statement ;
up:attribution _:407737 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:407783 a rdf:Statement ;
up:attribution _:407738 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:407784 a rdf:Statement ;
up:attribution _:407739 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:407785 a rdf:Statement ;
up:attribution _:407740 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:407786 a rdf:Statement ;
up:attribution _:407741 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:407787 a rdf:Statement ;
up:attribution _:407742 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:407788 a rdf:Statement ;
up:attribution _:407743 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:407789 a rdf:Statement ;
up:attribution _:407744 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:407790 a rdf:Statement ;
up:attribution _:407745 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:46 .
_:407791 a rdf:Statement ;
up:attribution _:407746 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:441 .
_:407792 a rdf:Statement ;
up:attribution _:407747 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:444 .
_:407793 a rdf:Statement ;
up:attribution _:407748 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:443 .
_:407794 a rdf:Statement ;
up:attribution _:407749 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:448 .
_:407795 a rdf:Statement ;
up:attribution _:407750 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:511 .
_:407796 a rdf:Statement ;
up:attribution _:407751 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:520 .
_:407797 a rdf:Statement ;
up:attribution _:407752 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:560 .
_:407798 a rdf:Statement ;
up:attribution _:407753 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:407799 a rdf:Statement ;
up:attribution _:407754 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016616 .
_:407800 a rdf:Statement ;
up:attribution _:407755 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016742 .
_:407801 a rdf:Statement ;
up:attribution _:407756 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0046493 .
_:407802 a rdf:Statement ;
up:attribution _:407757 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009103 .
_:407803 a rdf:Statement ;
up:source unirule:MF_01166 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:407804 a rdf:Statement ;
up:attribution _:407758 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:407805 a rdf:Statement ;
up:source unirule:MF_01166 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:407806 a rdf:Statement ;
up:attribution _:407759 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:407807 a rdf:Statement ;
up:source unirule:MF_01166 ;
rdf:subject ?pfs27 ;
rdf:predicate up:annotation ;
rdf:object ?annotation28 .
_:407808 a rdf:Statement ;
up:attribution _:407760 ;
rdf:subject ?pfs27 ;
rdf:predicate up:annotation ;
rdf:object ?annotation28 .
_:407809 a rdf:Statement ;
up:source unirule:MF_01166 ;
rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
_:407810 a rdf:Statement ;
up:attribution _:407761 ;
rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
_:407811 a rdf:Statement ;
up:source unirule:MF_01166 ;
rdf:subject ?pfs41 ;
rdf:predicate up:annotation ;
rdf:object ?annotation42 .
_:407812 a rdf:Statement ;
up:attribution _:407762 ;
rdf:subject ?pfs41 ;
rdf:predicate up:annotation ;
rdf:object ?annotation42 .
_:407813 a rdf:Statement ;
up:source unirule:MF_01166 ;
rdf:subject ?pfs48 ;
rdf:predicate up:annotation ;
rdf:object ?annotation49 .
_:407814 a rdf:Statement ;
up:attribution _:407763 ;
rdf:subject ?pfs48 ;
rdf:predicate up:annotation ;
rdf:object ?annotation49 .
_:407815 a rdf:Statement ;
up:source unirule:MF_01166 ;
rdf:subject ?pfs55 ;
rdf:predicate up:annotation ;
rdf:object ?annotation56 .
_:407816 a rdf:Statement ;
up:attribution _:407764 ;
rdf:subject ?pfs55 ;
rdf:predicate up:annotation ;
rdf:object ?annotation56 .
_:407817 a rdf:Statement ;
up:source unirule:MF_01166 ;
rdf:subject ?pfs62 ;
rdf:predicate up:annotation ;
rdf:object ?annotation63 .
_:407818 a rdf:Statement ;
up:attribution _:407765 ;
rdf:subject ?pfs62 ;
rdf:predicate up:annotation ;
rdf:object ?annotation63 .
_:407819 a rdf:Statement ;
up:source unirule:MF_01166 ;
rdf:subject ?pfs68 ;
rdf:predicate up:annotation ;
rdf:object ?annotation69 .
_:407820 a rdf:Statement ;
up:attribution _:407766 ;
rdf:subject ?pfs68 ;
rdf:predicate up:annotation ;
rdf:object ?annotation69 .
_:407821 a rdf:Statement ;
up:source unirule:MF_01166 ;
rdf:subject ?pfs74 ;
rdf:predicate up:annotation ;
rdf:object ?annotation75 .
_:407822 a rdf:Statement ;
up:attribution _:407767 ;
rdf:subject ?pfs74 ;
rdf:predicate up:annotation ;
rdf:object ?annotation75 .
_:407823 a rdf:Statement ;
up:source unirule:MF_01166 ;
rdf:subject ?pfs80 ;
rdf:predicate up:annotation ;
rdf:object ?annotation81 .
_:407824 a rdf:Statement ;
up:attribution _:407768 ;
rdf:subject ?pfs80 ;
rdf:predicate up:annotation ;
rdf:object ?annotation81 .
_:407825 a rdf:Statement ;
up:source unirule:MF_01166 ;
rdf:subject ?pfs87 ;
rdf:predicate up:annotation ;
rdf:object ?annotation88 .
_:407826 a rdf:Statement ;
up:attribution _:407769 ;
rdf:subject ?pfs87 ;
rdf:predicate up:annotation ;
rdf:object ?annotation88 .
_:407827 a rdf:Statement ;
up:source unirule:MF_01166 ;
rdf:subject ?pfs94 ;
rdf:predicate up:annotation ;
rdf:object ?annotation95 .
_:407828 a rdf:Statement ;
up:attribution _:407770 ;
rdf:subject ?pfs94 ;
rdf:predicate up:annotation ;
rdf:object ?annotation95 .
_:407829 a rdf:Statement ;
up:source unirule:MF_01166 ;
rdf:subject ?pfs101 ;
rdf:predicate up:annotation ;
rdf:object ?annotation102 .
_:407830 a rdf:Statement ;
up:attribution _:407771 ;
rdf:subject ?pfs101 ;
rdf:predicate up:annotation ;
rdf:object ?annotation102 .
_:407831 a rdf:Statement ;
up:source unirule:MF_01166 ;
rdf:subject ?pfs108 ;
rdf:predicate up:annotation ;
rdf:object ?annotation109 .
_:407832 a rdf:Statement ;
up:attribution _:407772 ;
rdf:subject ?pfs108 ;
rdf:predicate up:annotation ;
rdf:object ?annotation109 .
_:407833 a rdf:Statement ;
up:source unirule:MF_01166 ;
rdf:subject ?pfs115 ;
rdf:predicate up:annotation ;
rdf:object ?annotation116 .
_:407834 a rdf:Statement ;
up:attribution _:407773 ;
rdf:subject ?pfs115 ;
rdf:predicate up:annotation ;
rdf:object ?annotation116 .
_:407835 a rdf:Statement ;
up:source unirule:MF_01166 ;
rdf:subject ?pfs122 ;
rdf:predicate up:annotation ;
rdf:object ?annotation123 .
_:407836 a rdf:Statement ;
up:attribution _:407774 ;
rdf:subject ?pfs122 ;
rdf:predicate up:annotation ;
rdf:object ?annotation123 .
_:407837 a rdf:Statement ;
up:source unirule:MF_01166 ;
rdf:subject ?pfs129 ;
rdf:predicate up:annotation ;
rdf:object ?annotation130 .
_:407838 a rdf:Statement ;
up:attribution _:407775 ;
rdf:subject ?pfs129 ;
rdf:predicate up:annotation ;
rdf:object ?annotation130 .
_:407839 a rdf:Statement ;
up:source unirule:MF_01166 ;
rdf:subject ?pfs135 ;
rdf:predicate up:annotation ;
rdf:object ?annotation136 .
_:407840 a rdf:Statement ;
up:attribution _:407776 ;
rdf:subject ?pfs135 ;
rdf:predicate up:annotation ;
rdf:object ?annotation136 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01166
#Rule MF_01166 Created by:? on:2005-11-11 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01166 .
?thisOrganism rdfs:subClassOf+ taxon:1236 .
BIND(URI(CONCAT(STR(?this), '#MF_01166a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01166a1')) AS ?namedpart1) .
BIND(URI(CONCAT(STR(?this), '#MF_01166a2')) AS ?namedpart2) .
BIND(URI(CONCAT(STR(?this), '#MF_01166a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01166a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01166a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01166a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_01166a10')) AS ?annotation10) .
BIND(URI(CONCAT(STR(?this), '#MF_01166a11')) AS ?annotation11) .
BIND(URI(CONCAT(STR(?this), '#MF_01166a12')) AS ?annotation12) .
BIND(URI(CONCAT(STR(?this), '#MF_01166a13')) AS ?annotation13) .
BIND(URI(CONCAT(STR(?this), '#MF_01166a14')) AS ?annotation14) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch145 faldo:location ?templateMotifSequenceMatchRegionP77398146 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP77398148 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP77398MF_01166141 .
?templateMotifSequenceMatchRegionP77398146 faldo:begin ?templateMotifSequenceMatchBeginP77398147 .
?templateMotifSequenceMatchBeginP77398147 faldo:position ?templateMotifSequenceMatchBeginPositionP77398142 ;
faldo:reference isoform:P77398-1 .
?templateMotifSequenceProfileAlignmentOperationP77398148 edam:has_input signature:MF_01166 ;
rdf:type edam:operation_0300 .
?targetMotifMatch149 faldo:location ?targetMotifMatchRegionMatch150 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01166152 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP77398MF_01166143 .
?targetMotifMatchRegionMatch150 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01166151 .
?targetMotifMatchRegionMatchBeginMF_01166151 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01166144 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01166152 edam:has_input signature:MF_01166 ;
rdf:type edam:operation_0300 .
BIND(1 AS ?thisPositionOn19) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP77398MF_01166141, 1, (STRLEN(?templateMotifCigarP77398MF_01166141) - STRLEN(REPLACE(?templateMotifCigarP77398MF_01166141, CONCAT('^(?:-*[^-]){', STR(((304 - ?templateMotifSequenceMatchBeginPositionP77398142) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1153) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP77398MF_01166143, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166143) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166143, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1153), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP77398MF_01166143, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166143) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166143, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1153), '}'), '')))), '[^-]', ''))) AS ?step2154) .
BIND(((?step2154 + ?targetMotifMatchRegionMatchBeginPositionMF_01166144) - 1) AS ?thisPositionOn20) .
BIND(?this AS ?pfs1t155) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb17) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse18) .
FILTER ((BOUND(?thisPositionOn19) && BOUND(?thisPositionOn20))) .
BIND(URI(CONCAT(STR(?this), '#MF_01166a16')) AS ?annotation16) .
BIND(?this AS ?pfs15) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch160 faldo:location ?templateMotifSequenceMatchRegionP77398161 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP77398163 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP77398MF_01166156 .
?templateMotifSequenceMatchRegionP77398161 faldo:begin ?templateMotifSequenceMatchBeginP77398162 .
?templateMotifSequenceMatchBeginP77398162 faldo:position ?templateMotifSequenceMatchBeginPositionP77398157 ;
faldo:reference isoform:P77398-1 .
?templateMotifSequenceProfileAlignmentOperationP77398163 edam:has_input signature:MF_01166 ;
rdf:type edam:operation_0300 .
?targetMotifMatch164 faldo:location ?targetMotifMatchRegionMatch165 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01166167 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP77398MF_01166158 .
?targetMotifMatchRegionMatch165 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01166166 .
?targetMotifMatchRegionMatchBeginMF_01166166 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01166159 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01166167 edam:has_input signature:MF_01166 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP77398MF_01166156, 1, (STRLEN(?templateMotifCigarP77398MF_01166156) - STRLEN(REPLACE(?templateMotifCigarP77398MF_01166156, CONCAT('^(?:-*[^-]){', STR(((314 - ?templateMotifSequenceMatchBeginPositionP77398157) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1168) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP77398MF_01166158, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166158) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166158, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1168), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP77398MF_01166158, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166158) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166158, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1168), '}'), '')))), '[^-]', ''))) AS ?step2169) .
BIND(((?step2169 + ?targetMotifMatchRegionMatchBeginPositionMF_01166159) - 1) AS ?thisPositionOn25) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn26) .
BIND(?this AS ?pfs1t170) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfsb23) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfse24) .
FILTER ((BOUND(?thisPositionOn25) && BOUND(?thisPositionOn26))) .
BIND(URI(CONCAT(STR(?this), '#MF_01166a22')) AS ?annotation22) .
BIND(?this AS ?pfs21) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch175 faldo:location ?templateMotifSequenceMatchRegionP77398176 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP77398178 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP77398MF_01166171 .
?templateMotifSequenceMatchRegionP77398176 faldo:begin ?templateMotifSequenceMatchBeginP77398177 .
?templateMotifSequenceMatchBeginP77398177 faldo:position ?templateMotifSequenceMatchBeginPositionP77398172 ;
faldo:reference isoform:P77398-1 .
?templateMotifSequenceProfileAlignmentOperationP77398178 edam:has_input signature:MF_01166 ;
rdf:type edam:operation_0300 .
?targetMotifMatch179 faldo:location ?targetMotifMatchRegionMatch180 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01166182 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP77398MF_01166173 .
?targetMotifMatchRegionMatch180 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01166181 .
?targetMotifMatchRegionMatchBeginMF_01166181 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01166174 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01166182 edam:has_input signature:MF_01166 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP77398MF_01166171, 1, (STRLEN(?templateMotifCigarP77398MF_01166171) - STRLEN(REPLACE(?templateMotifCigarP77398MF_01166171, CONCAT('^(?:-*[^-]){', STR(((368 - ?templateMotifSequenceMatchBeginPositionP77398172) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1183) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP77398MF_01166173, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166173) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166173, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1183), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP77398MF_01166173, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166173) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166173, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1183), '}'), '')))), '[^-]', ''))) AS ?step2184) .
BIND(((?step2184 + ?targetMotifMatchRegionMatchBeginPositionMF_01166174) - 1) AS ?thisPositionOn32) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP77398MF_01166171, 1, (STRLEN(?templateMotifCigarP77398MF_01166171) - STRLEN(REPLACE(?templateMotifCigarP77398MF_01166171, CONCAT('^(?:-*[^-]){', STR(((369 - ?templateMotifSequenceMatchBeginPositionP77398172) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1185) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP77398MF_01166173, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166173) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166173, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1185), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP77398MF_01166173, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166173) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166173, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1185), '}'), '')))), '[^-]', ''))) AS ?step2186) .
BIND(((?step2186 + ?targetMotifMatchRegionMatchBeginPositionMF_01166174) - 1) AS ?thisPositionOn33) .
BIND(?this AS ?pfs1t187) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfsb29) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfse30) .
FILTER (REGEX('D[IV]', SUBSTR(?thisSequenceValue, ?thisPositionOn32, (?thisPositionOn33 - ?thisPositionOn32)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01166a28')) AS ?annotation28) .
BIND(?this AS ?pfs27) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch192 faldo:location ?templateMotifSequenceMatchRegionP77398193 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP77398195 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP77398MF_01166188 .
?templateMotifSequenceMatchRegionP77398193 faldo:begin ?templateMotifSequenceMatchBeginP77398194 .
?templateMotifSequenceMatchBeginP77398194 faldo:position ?templateMotifSequenceMatchBeginPositionP77398189 ;
faldo:reference isoform:P77398-1 .
?templateMotifSequenceProfileAlignmentOperationP77398195 edam:has_input signature:MF_01166 ;
rdf:type edam:operation_0300 .
?targetMotifMatch196 faldo:location ?targetMotifMatchRegionMatch197 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01166199 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP77398MF_01166190 .
?targetMotifMatchRegionMatch197 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01166198 .
?targetMotifMatchRegionMatchBeginMF_01166198 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01166191 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01166199 edam:has_input signature:MF_01166 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP77398MF_01166188, 1, (STRLEN(?templateMotifCigarP77398MF_01166188) - STRLEN(REPLACE(?templateMotifCigarP77398MF_01166188, CONCAT('^(?:-*[^-]){', STR(((86 - ?templateMotifSequenceMatchBeginPositionP77398189) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1200) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP77398MF_01166190, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166190) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166190, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1200), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP77398MF_01166190, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166190) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166190, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1200), '}'), '')))), '[^-]', ''))) AS ?step2201) .
BIND(((?step2201 + ?targetMotifMatchRegionMatchBeginPositionMF_01166191) - 1) AS ?thisPositionOn39) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP77398MF_01166188, 1, (STRLEN(?templateMotifCigarP77398MF_01166188) - STRLEN(REPLACE(?templateMotifCigarP77398MF_01166188, CONCAT('^(?:-*[^-]){', STR(((88 - ?templateMotifSequenceMatchBeginPositionP77398189) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1202) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP77398MF_01166190, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166190) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166190, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1202), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP77398MF_01166190, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166190) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166190, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1202), '}'), '')))), '[^-]', ''))) AS ?step2203) .
BIND(((?step2203 + ?targetMotifMatchRegionMatchBeginPositionMF_01166191) - 1) AS ?thisPositionOn40) .
BIND(?this AS ?pfs1t204) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfsb36) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfse37) .
FILTER (REGEX('H[ARNDCQEGHILKMFPSTWYVBZJUOX]I', SUBSTR(?thisSequenceValue, ?thisPositionOn39, (?thisPositionOn40 - ?thisPositionOn39)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01166a35')) AS ?annotation35) .
BIND(?this AS ?pfs34) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch209 faldo:location ?templateMotifSequenceMatchRegionP77398210 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP77398212 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP77398MF_01166205 .
?templateMotifSequenceMatchRegionP77398210 faldo:begin ?templateMotifSequenceMatchBeginP77398211 .
?templateMotifSequenceMatchBeginP77398211 faldo:position ?templateMotifSequenceMatchBeginPositionP77398206 ;
faldo:reference isoform:P77398-1 .
?templateMotifSequenceProfileAlignmentOperationP77398212 edam:has_input signature:MF_01166 ;
rdf:type edam:operation_0300 .
?targetMotifMatch213 faldo:location ?targetMotifMatchRegionMatch214 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01166216 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP77398MF_01166207 .
?targetMotifMatchRegionMatch214 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01166215 .
?targetMotifMatchRegionMatchBeginMF_01166215 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01166208 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01166216 edam:has_input signature:MF_01166 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP77398MF_01166205, 1, (STRLEN(?templateMotifCigarP77398MF_01166205) - STRLEN(REPLACE(?templateMotifCigarP77398MF_01166205, CONCAT('^(?:-*[^-]){', STR(((136 - ?templateMotifSequenceMatchBeginPositionP77398206) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1217) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP77398MF_01166207, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166207) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166207, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1217), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP77398MF_01166207, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166207) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166207, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1217), '}'), '')))), '[^-]', ''))) AS ?step2218) .
BIND(((?step2218 + ?targetMotifMatchRegionMatchBeginPositionMF_01166208) - 1) AS ?thisPositionOn46) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP77398MF_01166205, 1, (STRLEN(?templateMotifCigarP77398MF_01166205) - STRLEN(REPLACE(?templateMotifCigarP77398MF_01166205, CONCAT('^(?:-*[^-]){', STR(((140 - ?templateMotifSequenceMatchBeginPositionP77398206) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1219) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP77398MF_01166207, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166207) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166207, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1219), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP77398MF_01166207, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166207) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166207, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1219), '}'), '')))), '[^-]', ''))) AS ?step2220) .
BIND(((?step2220 + ?targetMotifMatchRegionMatchBeginPositionMF_01166208) - 1) AS ?thisPositionOn47) .
BIND(?this AS ?pfs1t221) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfsb43) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfse44) .
FILTER (REGEX('[VIT][ARNDCQEGHILKMFPSTWYVBZJUOX]{3)D', SUBSTR(?thisSequenceValue, ?thisPositionOn46, (?thisPositionOn47 - ?thisPositionOn46)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01166a42')) AS ?annotation42) .
BIND(?this AS ?pfs41) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch226 faldo:location ?templateMotifSequenceMatchRegionP77398227 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP77398229 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP77398MF_01166222 .
?templateMotifSequenceMatchRegionP77398227 faldo:begin ?templateMotifSequenceMatchBeginP77398228 .
?templateMotifSequenceMatchBeginP77398228 faldo:position ?templateMotifSequenceMatchBeginPositionP77398223 ;
faldo:reference isoform:P77398-1 .
?templateMotifSequenceProfileAlignmentOperationP77398229 edam:has_input signature:MF_01166 ;
rdf:type edam:operation_0300 .
?targetMotifMatch230 faldo:location ?targetMotifMatchRegionMatch231 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01166233 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP77398MF_01166224 .
?targetMotifMatchRegionMatch231 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01166232 .
?targetMotifMatchRegionMatchBeginMF_01166232 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01166225 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01166233 edam:has_input signature:MF_01166 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP77398MF_01166222, 1, (STRLEN(?templateMotifCigarP77398MF_01166222) - STRLEN(REPLACE(?templateMotifCigarP77398MF_01166222, CONCAT('^(?:-*[^-]){', STR(((432 - ?templateMotifSequenceMatchBeginPositionP77398223) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1234) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP77398MF_01166224, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166224) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166224, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1234), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP77398MF_01166224, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166224) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166224, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1234), '}'), '')))), '[^-]', ''))) AS ?step2235) .
BIND(((?step2235 + ?targetMotifMatchRegionMatchBeginPositionMF_01166225) - 1) AS ?thisPositionOn53) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP77398MF_01166222, 1, (STRLEN(?templateMotifCigarP77398MF_01166222) - STRLEN(REPLACE(?templateMotifCigarP77398MF_01166222, CONCAT('^(?:-*[^-]){', STR(((433 - ?templateMotifSequenceMatchBeginPositionP77398223) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1236) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP77398MF_01166224, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166224) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166224, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1236), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP77398MF_01166224, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166224) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166224, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1236), '}'), '')))), '[^-]', ''))) AS ?step2237) .
BIND(((?step2237 + ?targetMotifMatchRegionMatchBeginPositionMF_01166225) - 1) AS ?thisPositionOn54) .
BIND(?this AS ?pfs1t238) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfsb50) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfse51) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn53, (?thisPositionOn54 - ?thisPositionOn53)) = 'TS')) .
BIND(URI(CONCAT(STR(?this), '#MF_01166a49')) AS ?annotation49) .
BIND(?this AS ?pfs48) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch243 faldo:location ?templateMotifSequenceMatchRegionP77398244 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP77398246 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP77398MF_01166239 .
?templateMotifSequenceMatchRegionP77398244 faldo:begin ?templateMotifSequenceMatchBeginP77398245 .
?templateMotifSequenceMatchBeginP77398245 faldo:position ?templateMotifSequenceMatchBeginPositionP77398240 ;
faldo:reference isoform:P77398-1 .
?templateMotifSequenceProfileAlignmentOperationP77398246 edam:has_input signature:MF_01166 ;
rdf:type edam:operation_0300 .
?targetMotifMatch247 faldo:location ?targetMotifMatchRegionMatch248 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01166250 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP77398MF_01166241 .
?targetMotifMatchRegionMatch248 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01166249 .
?targetMotifMatchRegionMatchBeginMF_01166249 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01166242 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01166250 edam:has_input signature:MF_01166 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP77398MF_01166239, 1, (STRLEN(?templateMotifCigarP77398MF_01166239) - STRLEN(REPLACE(?templateMotifCigarP77398MF_01166239, CONCAT('^(?:-*[^-]){', STR(((526 - ?templateMotifSequenceMatchBeginPositionP77398240) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1251) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP77398MF_01166241, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166241) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166241, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1251), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP77398MF_01166241, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166241) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166241, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1251), '}'), '')))), '[^-]', ''))) AS ?step2252) .
BIND(((?step2252 + ?targetMotifMatchRegionMatchBeginPositionMF_01166242) - 1) AS ?thisPositionOn60) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP77398MF_01166239, 1, (STRLEN(?templateMotifCigarP77398MF_01166239) - STRLEN(REPLACE(?templateMotifCigarP77398MF_01166239, CONCAT('^(?:-*[^-]){', STR(((535 - ?templateMotifSequenceMatchBeginPositionP77398240) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1253) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP77398MF_01166241, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166241) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166241, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1253), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP77398MF_01166241, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166241) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166241, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1253), '}'), '')))), '[^-]', ''))) AS ?step2254) .
BIND(((?step2254 + ?targetMotifMatchRegionMatchBeginPositionMF_01166242) - 1) AS ?thisPositionOn61) .
BIND(?this AS ?pfs1t255) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfsb57) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfse58) .
FILTER (REGEX('[KRQ][ARNDCQEGHILKMFPSTWYVBZJUOX]{6)Q[ARNDCQEGHILKMFPSTWYVBZJUOX]R', SUBSTR(?thisSequenceValue, ?thisPositionOn60, (?thisPositionOn61 - ?thisPositionOn60)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01166a56')) AS ?annotation56) .
BIND(?this AS ?pfs55) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch260 faldo:location ?templateMotifSequenceMatchRegionP77398261 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP77398263 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP77398MF_01166256 .
?templateMotifSequenceMatchRegionP77398261 faldo:begin ?templateMotifSequenceMatchBeginP77398262 .
?templateMotifSequenceMatchBeginP77398262 faldo:position ?templateMotifSequenceMatchBeginPositionP77398257 ;
faldo:reference isoform:P77398-1 .
?templateMotifSequenceProfileAlignmentOperationP77398263 edam:has_input signature:MF_01166 ;
rdf:type edam:operation_0300 .
?targetMotifMatch264 faldo:location ?targetMotifMatchRegionMatch265 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01166267 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP77398MF_01166258 .
?targetMotifMatchRegionMatch265 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01166266 .
?targetMotifMatchRegionMatchBeginMF_01166266 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01166259 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01166267 edam:has_input signature:MF_01166 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP77398MF_01166256, 1, (STRLEN(?templateMotifCigarP77398MF_01166256) - STRLEN(REPLACE(?templateMotifCigarP77398MF_01166256, CONCAT('^(?:-*[^-]){', STR(((104 - ?templateMotifSequenceMatchBeginPositionP77398257) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1268) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP77398MF_01166258, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166258) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166258, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1268), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP77398MF_01166258, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166258) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166258, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1268), '}'), '')))), '[^-]', ''))) AS ?step2269) .
BIND(((?step2269 + ?targetMotifMatchRegionMatchBeginPositionMF_01166259) - 1) AS ?thisPositionOn66) .
BIND(?thisPositionOn66 AS ?thisPositionOn67) .
BIND(?this AS ?pfs1t270) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfsb64) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfse65) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn66, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01166a63')) AS ?annotation63) .
BIND(?this AS ?pfs62) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch275 faldo:location ?templateMotifSequenceMatchRegionP77398276 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP77398278 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP77398MF_01166271 .
?templateMotifSequenceMatchRegionP77398276 faldo:begin ?templateMotifSequenceMatchBeginP77398277 .
?templateMotifSequenceMatchBeginP77398277 faldo:position ?templateMotifSequenceMatchBeginPositionP77398272 ;
faldo:reference isoform:P77398-1 .
?templateMotifSequenceProfileAlignmentOperationP77398278 edam:has_input signature:MF_01166 ;
rdf:type edam:operation_0300 .
?targetMotifMatch279 faldo:location ?targetMotifMatchRegionMatch280 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01166282 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP77398MF_01166273 .
?targetMotifMatchRegionMatch280 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01166281 .
?targetMotifMatchRegionMatchBeginMF_01166281 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01166274 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01166282 edam:has_input signature:MF_01166 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP77398MF_01166271, 1, (STRLEN(?templateMotifCigarP77398MF_01166271) - STRLEN(REPLACE(?templateMotifCigarP77398MF_01166271, CONCAT('^(?:-*[^-]){', STR(((434 - ?templateMotifSequenceMatchBeginPositionP77398272) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1283) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP77398MF_01166273, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166273) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166273, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1283), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP77398MF_01166273, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166273) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166273, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1283), '}'), '')))), '[^-]', ''))) AS ?step2284) .
BIND(((?step2284 + ?targetMotifMatchRegionMatchBeginPositionMF_01166274) - 1) AS ?thisPositionOn72) .
BIND(?thisPositionOn72 AS ?thisPositionOn73) .
BIND(?this AS ?pfs1t285) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn72))) AS ?pfsb70) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfse71) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn72, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01166a69')) AS ?annotation69) .
BIND(?this AS ?pfs68) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch290 faldo:location ?templateMotifSequenceMatchRegionP77398291 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP77398293 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP77398MF_01166286 .
?templateMotifSequenceMatchRegionP77398291 faldo:begin ?templateMotifSequenceMatchBeginP77398292 .
?templateMotifSequenceMatchBeginP77398292 faldo:position ?templateMotifSequenceMatchBeginPositionP77398287 ;
faldo:reference isoform:P77398-1 .
?templateMotifSequenceProfileAlignmentOperationP77398293 edam:has_input signature:MF_01166 ;
rdf:type edam:operation_0300 .
?targetMotifMatch294 faldo:location ?targetMotifMatchRegionMatch295 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01166297 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP77398MF_01166288 .
?targetMotifMatchRegionMatch295 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01166296 .
?targetMotifMatchRegionMatchBeginMF_01166296 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01166289 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01166297 edam:has_input signature:MF_01166 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP77398MF_01166286, 1, (STRLEN(?templateMotifCigarP77398MF_01166286) - STRLEN(REPLACE(?templateMotifCigarP77398MF_01166286, CONCAT('^(?:-*[^-]){', STR(((619 - ?templateMotifSequenceMatchBeginPositionP77398287) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1298) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP77398MF_01166288, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166288) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166288, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1298), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP77398MF_01166288, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166288) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166288, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1298), '}'), '')))), '[^-]', ''))) AS ?step2299) .
BIND(((?step2299 + ?targetMotifMatchRegionMatchBeginPositionMF_01166289) - 1) AS ?thisPositionOn78) .
BIND(?thisPositionOn78 AS ?thisPositionOn79) .
BIND(?this AS ?pfs1t300) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn78))) AS ?pfsb76) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn79))) AS ?pfse77) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn78, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01166a75')) AS ?annotation75) .
BIND(?this AS ?pfs74) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch305 faldo:location ?templateMotifSequenceMatchRegionP77398306 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP77398308 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP77398MF_01166301 .
?templateMotifSequenceMatchRegionP77398306 faldo:begin ?templateMotifSequenceMatchBeginP77398307 .
?templateMotifSequenceMatchBeginP77398307 faldo:position ?templateMotifSequenceMatchBeginPositionP77398302 ;
faldo:reference isoform:P77398-1 .
?templateMotifSequenceProfileAlignmentOperationP77398308 edam:has_input signature:MF_01166 ;
rdf:type edam:operation_0300 .
?targetMotifMatch309 faldo:location ?targetMotifMatchRegionMatch310 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01166312 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP77398MF_01166303 .
?targetMotifMatchRegionMatch310 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01166311 .
?targetMotifMatchRegionMatchBeginMF_01166311 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01166304 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01166312 edam:has_input signature:MF_01166 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP77398MF_01166301, 1, (STRLEN(?templateMotifCigarP77398MF_01166301) - STRLEN(REPLACE(?templateMotifCigarP77398MF_01166301, CONCAT('^(?:-*[^-]){', STR(((114 - ?templateMotifSequenceMatchBeginPositionP77398302) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1313) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP77398MF_01166303, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166303) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166303, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1313), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP77398MF_01166303, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166303) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166303, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1313), '}'), '')))), '[^-]', ''))) AS ?step2314) .
BIND(((?step2314 + ?targetMotifMatchRegionMatchBeginPositionMF_01166304) - 1) AS ?thisPositionOn85) .
BIND(?thisPositionOn85 AS ?thisPositionOn86) .
BIND(?this AS ?pfs1t315) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn85))) AS ?pfsb82) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn86))) AS ?pfse83) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn85, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01166a81')) AS ?annotation81) .
BIND(?this AS ?pfs80) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch320 faldo:location ?templateMotifSequenceMatchRegionP77398321 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP77398323 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP77398MF_01166316 .
?templateMotifSequenceMatchRegionP77398321 faldo:begin ?templateMotifSequenceMatchBeginP77398322 .
?templateMotifSequenceMatchBeginP77398322 faldo:position ?templateMotifSequenceMatchBeginPositionP77398317 ;
faldo:reference isoform:P77398-1 .
?templateMotifSequenceProfileAlignmentOperationP77398323 edam:has_input signature:MF_01166 ;
rdf:type edam:operation_0300 .
?targetMotifMatch324 faldo:location ?targetMotifMatchRegionMatch325 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01166327 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP77398MF_01166318 .
?targetMotifMatchRegionMatch325 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01166326 .
?targetMotifMatchRegionMatchBeginMF_01166326 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01166319 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01166327 edam:has_input signature:MF_01166 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP77398MF_01166316, 1, (STRLEN(?templateMotifCigarP77398MF_01166316) - STRLEN(REPLACE(?templateMotifCigarP77398MF_01166316, CONCAT('^(?:-*[^-]){', STR(((347 - ?templateMotifSequenceMatchBeginPositionP77398317) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1328) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP77398MF_01166318, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166318) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166318, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1328), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP77398MF_01166318, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166318) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166318, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1328), '}'), '')))), '[^-]', ''))) AS ?step2329) .
BIND(((?step2329 + ?targetMotifMatchRegionMatchBeginPositionMF_01166319) - 1) AS ?thisPositionOn92) .
BIND(?thisPositionOn92 AS ?thisPositionOn93) .
BIND(?this AS ?pfs1t330) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn92))) AS ?pfsb89) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn93))) AS ?pfse90) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn92, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01166a88')) AS ?annotation88) .
BIND(?this AS ?pfs87) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch335 faldo:location ?templateMotifSequenceMatchRegionP77398336 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP77398338 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP77398MF_01166331 .
?templateMotifSequenceMatchRegionP77398336 faldo:begin ?templateMotifSequenceMatchBeginP77398337 .
?templateMotifSequenceMatchBeginP77398337 faldo:position ?templateMotifSequenceMatchBeginPositionP77398332 ;
faldo:reference isoform:P77398-1 .
?templateMotifSequenceProfileAlignmentOperationP77398338 edam:has_input signature:MF_01166 ;
rdf:type edam:operation_0300 .
?targetMotifMatch339 faldo:location ?targetMotifMatchRegionMatch340 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01166342 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP77398MF_01166333 .
?targetMotifMatchRegionMatch340 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01166341 .
?targetMotifMatchRegionMatchBeginMF_01166341 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01166334 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01166342 edam:has_input signature:MF_01166 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP77398MF_01166331, 1, (STRLEN(?templateMotifCigarP77398MF_01166331) - STRLEN(REPLACE(?templateMotifCigarP77398MF_01166331, CONCAT('^(?:-*[^-]){', STR(((393 - ?templateMotifSequenceMatchBeginPositionP77398332) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1343) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP77398MF_01166333, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166333) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166333, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1343), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP77398MF_01166333, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166333) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166333, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1343), '}'), '')))), '[^-]', ''))) AS ?step2344) .
BIND(((?step2344 + ?targetMotifMatchRegionMatchBeginPositionMF_01166334) - 1) AS ?thisPositionOn99) .
BIND(?thisPositionOn99 AS ?thisPositionOn100) .
BIND(?this AS ?pfs1t345) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn99))) AS ?pfsb96) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn100))) AS ?pfse97) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn99, 1) = 'A')) .
BIND(URI(CONCAT(STR(?this), '#MF_01166a95')) AS ?annotation95) .
BIND(?this AS ?pfs94) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch350 faldo:location ?templateMotifSequenceMatchRegionP77398351 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP77398353 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP77398MF_01166346 .
?templateMotifSequenceMatchRegionP77398351 faldo:begin ?templateMotifSequenceMatchBeginP77398352 .
?templateMotifSequenceMatchBeginP77398352 faldo:position ?templateMotifSequenceMatchBeginPositionP77398347 ;
faldo:reference isoform:P77398-1 .
?templateMotifSequenceProfileAlignmentOperationP77398353 edam:has_input signature:MF_01166 ;
rdf:type edam:operation_0300 .
?targetMotifMatch354 faldo:location ?targetMotifMatchRegionMatch355 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01166357 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP77398MF_01166348 .
?targetMotifMatchRegionMatch355 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01166356 .
?targetMotifMatchRegionMatchBeginMF_01166356 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01166349 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01166357 edam:has_input signature:MF_01166 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP77398MF_01166346, 1, (STRLEN(?templateMotifCigarP77398MF_01166346) - STRLEN(REPLACE(?templateMotifCigarP77398MF_01166346, CONCAT('^(?:-*[^-]){', STR(((398 - ?templateMotifSequenceMatchBeginPositionP77398347) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1358) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP77398MF_01166348, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166348) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166348, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1358), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP77398MF_01166348, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166348) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166348, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1358), '}'), '')))), '[^-]', ''))) AS ?step2359) .
BIND(((?step2359 + ?targetMotifMatchRegionMatchBeginPositionMF_01166349) - 1) AS ?thisPositionOn106) .
BIND(?thisPositionOn106 AS ?thisPositionOn107) .
BIND(?this AS ?pfs1t360) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn106))) AS ?pfsb103) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn107))) AS ?pfse104) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn106, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_01166a102')) AS ?annotation102) .
BIND(?this AS ?pfs101) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch365 faldo:location ?templateMotifSequenceMatchRegionP77398366 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP77398368 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP77398MF_01166361 .
?templateMotifSequenceMatchRegionP77398366 faldo:begin ?templateMotifSequenceMatchBeginP77398367 .
?templateMotifSequenceMatchBeginP77398367 faldo:position ?templateMotifSequenceMatchBeginPositionP77398362 ;
faldo:reference isoform:P77398-1 .
?templateMotifSequenceProfileAlignmentOperationP77398368 edam:has_input signature:MF_01166 ;
rdf:type edam:operation_0300 .
?targetMotifMatch369 faldo:location ?targetMotifMatchRegionMatch370 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01166372 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP77398MF_01166363 .
?targetMotifMatchRegionMatch370 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01166371 .
?targetMotifMatchRegionMatchBeginMF_01166371 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01166364 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01166372 edam:has_input signature:MF_01166 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP77398MF_01166361, 1, (STRLEN(?templateMotifCigarP77398MF_01166361) - STRLEN(REPLACE(?templateMotifCigarP77398MF_01166361, CONCAT('^(?:-*[^-]){', STR(((460 - ?templateMotifSequenceMatchBeginPositionP77398362) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1373) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP77398MF_01166363, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166363) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166363, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1373), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP77398MF_01166363, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166363) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166363, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1373), '}'), '')))), '[^-]', ''))) AS ?step2374) .
BIND(((?step2374 + ?targetMotifMatchRegionMatchBeginPositionMF_01166364) - 1) AS ?thisPositionOn113) .
BIND(?thisPositionOn113 AS ?thisPositionOn114) .
BIND(?this AS ?pfs1t375) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn113))) AS ?pfsb110) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn114))) AS ?pfse111) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn113, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01166a109')) AS ?annotation109) .
BIND(?this AS ?pfs108) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch380 faldo:location ?templateMotifSequenceMatchRegionP77398381 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP77398383 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP77398MF_01166376 .
?templateMotifSequenceMatchRegionP77398381 faldo:begin ?templateMotifSequenceMatchBeginP77398382 .
?templateMotifSequenceMatchBeginP77398382 faldo:position ?templateMotifSequenceMatchBeginPositionP77398377 ;
faldo:reference isoform:P77398-1 .
?templateMotifSequenceProfileAlignmentOperationP77398383 edam:has_input signature:MF_01166 ;
rdf:type edam:operation_0300 .
?targetMotifMatch384 faldo:location ?targetMotifMatchRegionMatch385 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01166387 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP77398MF_01166378 .
?targetMotifMatchRegionMatch385 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01166386 .
?targetMotifMatchRegionMatchBeginMF_01166386 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01166379 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01166387 edam:has_input signature:MF_01166 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP77398MF_01166376, 1, (STRLEN(?templateMotifCigarP77398MF_01166376) - STRLEN(REPLACE(?templateMotifCigarP77398MF_01166376, CONCAT('^(?:-*[^-]){', STR(((492 - ?templateMotifSequenceMatchBeginPositionP77398377) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1388) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP77398MF_01166378, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166378) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166378, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1388), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP77398MF_01166378, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166378) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166378, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1388), '}'), '')))), '[^-]', ''))) AS ?step2389) .
BIND(((?step2389 + ?targetMotifMatchRegionMatchBeginPositionMF_01166379) - 1) AS ?thisPositionOn120) .
BIND(?thisPositionOn120 AS ?thisPositionOn121) .
BIND(?this AS ?pfs1t390) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn120))) AS ?pfsb117) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn121))) AS ?pfse118) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn120, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_01166a116')) AS ?annotation116) .
BIND(?this AS ?pfs115) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch395 faldo:location ?templateMotifSequenceMatchRegionP77398396 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP77398398 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP77398MF_01166391 .
?templateMotifSequenceMatchRegionP77398396 faldo:begin ?templateMotifSequenceMatchBeginP77398397 .
?templateMotifSequenceMatchBeginP77398397 faldo:position ?templateMotifSequenceMatchBeginPositionP77398392 ;
faldo:reference isoform:P77398-1 .
?templateMotifSequenceProfileAlignmentOperationP77398398 edam:has_input signature:MF_01166 ;
rdf:type edam:operation_0300 .
?targetMotifMatch399 faldo:location ?targetMotifMatchRegionMatch400 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01166402 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP77398MF_01166393 .
?targetMotifMatchRegionMatch400 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01166401 .
?targetMotifMatchRegionMatchBeginMF_01166401 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01166394 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01166402 edam:has_input signature:MF_01166 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP77398MF_01166391, 1, (STRLEN(?templateMotifCigarP77398MF_01166391) - STRLEN(REPLACE(?templateMotifCigarP77398MF_01166391, CONCAT('^(?:-*[^-]){', STR(((613 - ?templateMotifSequenceMatchBeginPositionP77398392) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1403) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP77398MF_01166393, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166393) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166393, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1403), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP77398MF_01166393, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166393) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166393, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1403), '}'), '')))), '[^-]', ''))) AS ?step2404) .
BIND(((?step2404 + ?targetMotifMatchRegionMatchBeginPositionMF_01166394) - 1) AS ?thisPositionOn127) .
BIND(?thisPositionOn127 AS ?thisPositionOn128) .
BIND(?this AS ?pfs1t405) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn127))) AS ?pfsb124) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn128))) AS ?pfse125) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn127, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_01166a123')) AS ?annotation123) .
BIND(?this AS ?pfs122) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch410 faldo:location ?templateMotifSequenceMatchRegionP77398411 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP77398413 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP77398MF_01166406 .
?templateMotifSequenceMatchRegionP77398411 faldo:begin ?templateMotifSequenceMatchBeginP77398412 .
?templateMotifSequenceMatchBeginP77398412 faldo:position ?templateMotifSequenceMatchBeginPositionP77398407 ;
faldo:reference isoform:P77398-1 .
?templateMotifSequenceProfileAlignmentOperationP77398413 edam:has_input signature:MF_01166 ;
rdf:type edam:operation_0300 .
?targetMotifMatch414 faldo:location ?targetMotifMatchRegionMatch415 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01166417 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP77398MF_01166408 .
?targetMotifMatchRegionMatch415 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01166416 .
?targetMotifMatchRegionMatchBeginMF_01166416 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01166409 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01166417 edam:has_input signature:MF_01166 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP77398MF_01166406, 1, (STRLEN(?templateMotifCigarP77398MF_01166406) - STRLEN(REPLACE(?templateMotifCigarP77398MF_01166406, CONCAT('^(?:-*[^-]){', STR(((102 - ?templateMotifSequenceMatchBeginPositionP77398407) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1418) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP77398MF_01166408, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166408) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166408, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1418), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP77398MF_01166408, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166408) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166408, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1418), '}'), '')))), '[^-]', ''))) AS ?step2419) .
BIND(((?step2419 + ?targetMotifMatchRegionMatchBeginPositionMF_01166409) - 1) AS ?thisPositionOn133) .
BIND(?thisPositionOn133 AS ?thisPositionOn134) .
BIND(?this AS ?pfs1t420) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn133))) AS ?pfsb131) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn134))) AS ?pfse132) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn133, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_01166a130')) AS ?annotation130) .
BIND(?this AS ?pfs129) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch425 faldo:location ?templateMotifSequenceMatchRegionP77398426 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP77398428 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP77398MF_01166421 .
?templateMotifSequenceMatchRegionP77398426 faldo:begin ?templateMotifSequenceMatchBeginP77398427 .
?templateMotifSequenceMatchBeginP77398427 faldo:position ?templateMotifSequenceMatchBeginPositionP77398422 ;
faldo:reference isoform:P77398-1 .
?templateMotifSequenceProfileAlignmentOperationP77398428 edam:has_input signature:MF_01166 ;
rdf:type edam:operation_0300 .
?targetMotifMatch429 faldo:location ?targetMotifMatchRegionMatch430 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01166432 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP77398MF_01166423 .
?targetMotifMatchRegionMatch430 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01166431 .
?targetMotifMatchRegionMatchBeginMF_01166431 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01166424 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01166432 edam:has_input signature:MF_01166 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP77398MF_01166421, 1, (STRLEN(?templateMotifCigarP77398MF_01166421) - STRLEN(REPLACE(?templateMotifCigarP77398MF_01166421, CONCAT('^(?:-*[^-]){', STR(((140 - ?templateMotifSequenceMatchBeginPositionP77398422) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1433) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP77398MF_01166423, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166423) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166423, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1433), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP77398MF_01166423, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166423) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166423, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1433), '}'), '')))), '[^-]', ''))) AS ?step2434) .
BIND(((?step2434 + ?targetMotifMatchRegionMatchBeginPositionMF_01166424) - 1) AS ?thisPositionOn139) .
BIND(?thisPositionOn139 AS ?thisPositionOn140) .
BIND(?this AS ?pfs1t435) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn139))) AS ?pfsb137) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn140))) AS ?pfse138) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn139, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01166a136')) AS ?annotation136) .
BIND(?this AS ?pfs135) .
}
}
"xsd:string |
