| http://purl.uniprot.org/unirules/MF_01220#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:430308 up:source unirule:MF_01220 .
_:430309 up:source unirule:MF_01220 .
_:430310 up:source unirule:MF_01220 .
_:430311 up:source unirule:MF_01220 .
_:430312 up:source unirule:MF_01220 .
_:430313 up:source unirule:MF_01220 .
_:430314 up:source unirule:MF_01220 .
_:430315 up:source unirule:MF_01220 .
_:430316 up:source unirule:MF_01220 .
_:430317 up:source unirule:MF_01220 .
_:430318 up:source unirule:MF_01220 .
_:430319 up:source unirule:MF_01220 .
_:430320 up:source unirule:MF_01220 .
_:430321 up:source unirule:MF_01220 .
_:430322 up:source unirule:MF_01220 .
_:430323 up:source unirule:MF_01220 .
_:430324 up:source unirule:MF_01220 .
_:430325 up:source unirule:MF_01220 .
_:430326 up:source unirule:MF_01220 .
_:430327 up:source unirule:MF_01220 .
_:430328 up:source unirule:MF_01220 .
_:430329 up:source unirule:MF_01220 .
_:430330 up:source unirule:MF_01220 .
_:430331 up:source unirule:MF_01220 .
_:430332 up:source unirule:MF_01220 .
_:430333 up:source unirule:MF_01220 .
_:430334 up:source unirule:MF_01220 .
_:430335 up:source unirule:MF_01220 .
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_:430337 up:source unirule:MF_01220 .
_:430338 up:source unirule:MF_01220 .
_:430339 up:source unirule:MF_01220 .
_:430340 up:source unirule:MF_01220 .
_:430341 up:source unirule:MF_01220 .
_:430342 up:source unirule:MF_01220 .
_:430343 up:source unirule:MF_01220 .
_:430344 up:source unirule:MF_01220 .
_:430345 up:source unirule:MF_01220 .
_:430346 up:source unirule:MF_01220 .
_:430347 up:source unirule:MF_01220 .
_:430348 up:source unirule:MF_01220 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ,
?annotation8 ,
?annotation10 ;
up:classifiedWith GO:0005737 ,
GO:0033862 ,
GO:0044210 ,
keyword:418 ,
keyword:547 ,
keyword:665 ,
keyword:67 ,
keyword:808 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.7.4.22' ;
up:fullName 'Uridylate kinase' ;
up:shortName 'UK' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Uridine monophosphate kinase' ;
up:shortName 'UMP kinase' ,
'UMPK' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'pyrH' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the reversible phosphorylation of UMP to UDP.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 a up:Pathway_Annotation ;
rdfs:comment 'Pyrimidine metabolism; CTP biosynthesis via de novo pathway; UDP from UMP (UMPK route): step 1/1.' .
?annotation7 a up:Subunit_Annotation ;
rdfs:comment 'Homohexamer.' .
?annotation8 a up:Subcellular_Location_Annotation .
?annotation8li9 up:cellularComponent .
?annotation10 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the UMP kinase family.' .
?case11 up:classifiedWith keyword:21 .
?pfs13 up:annotation ?annotation14 .
?annotation14 faldo:begin ?pfsb15 ;
faldo:end ?pfse16 ;
up:ligand ?ligand17 ;
rdf:type up:Binding_Site_Annotation .
?pfsb15 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfse16 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?ligand17 rdfs:subClassOf chebi:30616 .
?pfs20 up:annotation ?annotation21 .
?annotation21 faldo:begin ?pfsb22 ;
faldo:end ?pfse23 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Involved in allosteric activation by GTP' .
?pfsb22 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfse23 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?pfs26 up:annotation ?annotation27 .
?annotation27 faldo:begin ?pfsb28 ;
faldo:end ?pfse29 ;
up:ligand ?ligand30 ;
rdf:type up:Binding_Site_Annotation .
?pfsb28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?pfse29 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?ligand30 rdfs:subClassOf chebi:30616 .
?pfs33 up:annotation ?annotation34 .
?annotation34 faldo:begin ?pfsb35 ;
faldo:end ?pfse36 ;
up:ligand ?ligand37 ;
rdf:type up:Binding_Site_Annotation .
?pfsb35 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?pfse36 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?ligand37 rdfs:subClassOf chebi:57865 .
?pfs40 up:annotation ?annotation41 .
?annotation41 faldo:begin ?pfsb42 ;
faldo:end ?pfse43 ;
up:ligand ?ligand44 ;
rdf:type up:Binding_Site_Annotation .
?pfsb42 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?pfse43 faldo:position ?thisPositionOn46 ;
rdf:type faldo:ExactPosition .
?ligand44 rdfs:subClassOf chebi:57865 .
?pfs47 up:annotation ?annotation48 .
?annotation48 faldo:begin ?pfsb49 ;
faldo:end ?pfse50 ;
up:ligand ?ligand51 ;
rdf:type up:Binding_Site_Annotation .
?pfsb49 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?pfse50 faldo:position ?thisPositionOn53 ;
rdf:type faldo:ExactPosition .
?ligand51 rdfs:subClassOf chebi:57865 .
?pfs54 up:annotation ?annotation55 .
?annotation55 faldo:begin ?pfsb56 ;
faldo:end ?pfse57 ;
up:ligand ?ligand58 ;
rdf:type up:Binding_Site_Annotation .
?pfsb56 faldo:position ?thisPositionOn59 ;
rdf:type faldo:ExactPosition .
?pfse57 faldo:position ?thisPositionOn60 ;
rdf:type faldo:ExactPosition .
?ligand58 rdfs:subClassOf chebi:30616 .
?pfs61 up:annotation ?annotation62 .
?annotation62 faldo:begin ?pfsb63 ;
faldo:end ?pfse64 ;
up:ligand ?ligand65 ;
rdf:type up:Binding_Site_Annotation .
?pfsb63 faldo:position ?thisPositionOn66 ;
rdf:type faldo:ExactPosition .
?pfse64 faldo:position ?thisPositionOn67 ;
rdf:type faldo:ExactPosition .
?ligand65 rdfs:subClassOf chebi:30616 .
?pfs68 up:annotation ?annotation69 .
?annotation69 faldo:begin ?pfsb70 ;
faldo:end ?pfse71 ;
up:ligand ?ligand72 ;
rdf:type up:Binding_Site_Annotation .
?pfsb70 faldo:position ?thisPositionOn73 ;
rdf:type faldo:ExactPosition .
?pfse71 faldo:position ?thisPositionOn74 ;
rdf:type faldo:ExactPosition .
?ligand72 rdfs:subClassOf chebi:30616 .
?pfs75 up:annotation ?annotation76 .
?annotation76 faldo:begin ?pfsb77 ;
faldo:end ?pfse78 ;
up:ligand ?ligand79 ;
rdf:type up:Binding_Site_Annotation .
?pfsb77 faldo:position ?thisPositionOn80 ;
rdf:type faldo:ExactPosition .
?pfse78 faldo:position ?thisPositionOn81 ;
rdf:type faldo:ExactPosition .
?ligand79 rdfs:subClassOf chebi:30616 .
?pfs82 up:annotation ?annotation83 .
?annotation83 faldo:begin ?pfsb84 ;
faldo:end ?pfse85 ;
up:ligand ?ligand86 ;
rdf:type up:Binding_Site_Annotation .
?pfsb84 faldo:position ?thisPositionOn87 ;
rdf:type faldo:ExactPosition .
?pfse85 faldo:position ?thisPositionOn88 ;
rdf:type faldo:ExactPosition .
?ligand86 rdfs:subClassOf chebi:30616 .
?pfs89 up:annotation ?annotation90 .
?annotation90 faldo:begin ?pfsb91 ;
faldo:end ?pfse92 ;
up:ligand ?ligand93 ;
rdf:type up:Binding_Site_Annotation .
?pfsb91 faldo:position ?thisPositionOn94 ;
rdf:type faldo:ExactPosition .
?pfse92 faldo:position ?thisPositionOn95 ;
rdf:type faldo:ExactPosition .
?ligand93 rdfs:subClassOf chebi:30616 .
?pfs96 up:annotation ?annotation97 .
?annotation97 faldo:begin ?pfsb98 ;
faldo:end ?pfse99 ;
up:ligand ?ligand100 ;
rdf:type up:Binding_Site_Annotation .
?pfsb98 faldo:position ?thisPositionOn101 ;
rdf:type faldo:ExactPosition .
?pfse99 faldo:position ?thisPositionOn102 ;
rdf:type faldo:ExactPosition .
?ligand100 rdfs:subClassOf chebi:57865 .
?pfs103 up:annotation ?annotation104 .
?annotation104 faldo:begin ?pfsb105 ;
faldo:end ?pfse106 ;
up:ligand ?ligand107 ;
rdf:type up:Binding_Site_Annotation .
?pfsb105 faldo:position ?thisPositionOn108 ;
rdf:type faldo:ExactPosition .
?pfse106 faldo:position ?thisPositionOn109 ;
rdf:type faldo:ExactPosition .
?ligand107 rdfs:subClassOf chebi:30616 .
?pfs110 up:annotation ?annotation111 .
?annotation111 faldo:begin ?pfsb112 ;
faldo:end ?pfse113 ;
up:ligand ?ligand114 ;
rdf:type up:Binding_Site_Annotation .
?pfsb112 faldo:position ?thisPositionOn115 ;
rdf:type faldo:ExactPosition .
?pfse113 faldo:position ?thisPositionOn116 ;
rdf:type faldo:ExactPosition .
?ligand114 rdfs:subClassOf chebi:57865 .
?pfs117 up:annotation ?annotation118 .
?annotation118 faldo:begin ?pfsb119 ;
faldo:end ?pfse120 ;
up:ligand ?ligand121 ;
rdf:type up:Binding_Site_Annotation .
?pfsb119 faldo:position ?thisPositionOn122 ;
rdf:type faldo:ExactPosition .
?pfse120 faldo:position ?thisPositionOn123 ;
rdf:type faldo:ExactPosition .
?ligand121 rdfs:subClassOf chebi:30616 .
?pfs124 up:annotation ?annotation125 .
?annotation125 faldo:begin ?pfsb126 ;
faldo:end ?pfse127 ;
up:ligand ?ligand128 ;
rdf:type up:Binding_Site_Annotation .
?pfsb126 faldo:position ?thisPositionOn129 ;
rdf:type faldo:ExactPosition .
?pfse127 faldo:position ?thisPositionOn130 ;
rdf:type faldo:ExactPosition .
?ligand128 rdfs:subClassOf chebi:30616 .
?pfs131 up:annotation ?annotation132 .
?annotation132 faldo:begin ?pfsb133 ;
faldo:end ?pfse134 ;
up:ligand ?ligand135 ;
rdf:type up:Binding_Site_Annotation .
?pfsb133 faldo:position ?thisPositionOn136 ;
rdf:type faldo:ExactPosition .
?pfse134 faldo:position ?thisPositionOn137 ;
rdf:type faldo:ExactPosition .
?ligand135 rdfs:subClassOf chebi:57865 .
?pfs138 up:annotation ?annotation139 .
?annotation139 faldo:begin ?pfsb140 ;
faldo:end ?pfse141 ;
up:ligand ?ligand142 ;
rdf:type up:Binding_Site_Annotation .
?pfsb140 faldo:position ?thisPositionOn143 ;
rdf:type faldo:ExactPosition .
?pfse141 faldo:position ?thisPositionOn144 ;
rdf:type faldo:ExactPosition .
?ligand142 rdfs:subClassOf chebi:30616 .
?pfs145 up:annotation ?annotation146 .
?annotation146 faldo:begin ?pfsb147 ;
faldo:end ?pfse148 ;
up:ligand ?ligand149 ;
rdf:type up:Binding_Site_Annotation .
?pfsb147 faldo:position ?thisPositionOn150 ;
rdf:type faldo:ExactPosition .
?pfse148 faldo:position ?thisPositionOn151 ;
rdf:type faldo:ExactPosition .
?ligand149 rdfs:subClassOf chebi:30616 .
?pfs152 up:annotation ?annotation153 .
?annotation153 faldo:begin ?pfsb154 ;
faldo:end ?pfse155 ;
up:ligand ?ligand156 ;
rdf:type up:Binding_Site_Annotation .
?pfsb154 faldo:position ?thisPositionOn157 ;
rdf:type faldo:ExactPosition .
?pfse155 faldo:position ?thisPositionOn158 ;
rdf:type faldo:ExactPosition .
?ligand156 rdfs:subClassOf chebi:30616 .
?pfs159 up:annotation ?annotation160 .
?annotation160 faldo:begin ?pfsb161 ;
faldo:end ?pfse162 ;
up:ligand ?ligand163 ;
rdf:type up:Binding_Site_Annotation .
?pfsb161 faldo:position ?thisPositionOn164 ;
rdf:type faldo:ExactPosition .
?pfse162 faldo:position ?thisPositionOn165 ;
rdf:type faldo:ExactPosition .
?ligand163 rdfs:subClassOf chebi:30616 .
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up:attribution _:430308 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
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up:attribution _:430309 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
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up:attribution _:430310 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
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rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
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rdf:subject ?this ;
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rdf:subject ?this ;
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rdf:subject ?this ;
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rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
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rdf:subject ?this ;
rdf:predicate up:annotation ;
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rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
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rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
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rdf:subject ?this ;
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rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
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rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:665 .
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rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
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rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0033862 .
_:430365 a rdf:Statement ;
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rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0044210 .
_:430366 a rdf:Statement ;
up:attribution _:430325 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:430367 a rdf:Statement ;
up:attribution _:430326 ;
rdf:subject ?case11 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:21 .
_:430368 a rdf:Statement ;
up:source unirule:MF_01220 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
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rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
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up:source unirule:MF_01220 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
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rdf:subject ?pfs20 ;
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rdf:subject ?pfs26 ;
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rdf:predicate up:annotation ;
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rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
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rdf:subject ?pfs40 ;
rdf:predicate up:annotation ;
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rdf:subject ?pfs40 ;
rdf:predicate up:annotation ;
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rdf:subject ?pfs47 ;
rdf:predicate up:annotation ;
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rdf:subject ?pfs47 ;
rdf:predicate up:annotation ;
rdf:object ?annotation48 .
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up:source unirule:MF_01220 ;
rdf:subject ?pfs54 ;
rdf:predicate up:annotation ;
rdf:object ?annotation55 .
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rdf:subject ?pfs54 ;
rdf:predicate up:annotation ;
rdf:object ?annotation55 .
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up:source unirule:MF_01220 ;
rdf:subject ?pfs61 ;
rdf:predicate up:annotation ;
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rdf:subject ?pfs61 ;
rdf:predicate up:annotation ;
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rdf:subject ?pfs68 ;
rdf:predicate up:annotation ;
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rdf:subject ?pfs68 ;
rdf:predicate up:annotation ;
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up:source unirule:MF_01220 ;
rdf:subject ?pfs75 ;
rdf:predicate up:annotation ;
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rdf:subject ?pfs75 ;
rdf:predicate up:annotation ;
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up:source unirule:MF_01220 ;
rdf:subject ?pfs82 ;
rdf:predicate up:annotation ;
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rdf:subject ?pfs82 ;
rdf:predicate up:annotation ;
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rdf:subject ?pfs89 ;
rdf:predicate up:annotation ;
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rdf:subject ?pfs89 ;
rdf:predicate up:annotation ;
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rdf:predicate up:annotation ;
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rdf:predicate up:annotation ;
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rdf:subject ?pfs103 ;
rdf:predicate up:annotation ;
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rdf:subject ?pfs103 ;
rdf:predicate up:annotation ;
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up:source unirule:MF_01220 ;
rdf:subject ?pfs110 ;
rdf:predicate up:annotation ;
rdf:object ?annotation111 .
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rdf:subject ?pfs110 ;
rdf:predicate up:annotation ;
rdf:object ?annotation111 .
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up:source unirule:MF_01220 ;
rdf:subject ?pfs117 ;
rdf:predicate up:annotation ;
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rdf:object ?annotation118 .
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rdf:subject ?pfs124 ;
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rdf:subject ?pfs124 ;
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rdf:subject ?pfs131 ;
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up:source unirule:MF_01220 ;
rdf:subject ?pfs138 ;
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rdf:subject ?pfs138 ;
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rdf:subject ?pfs145 ;
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rdf:subject ?pfs145 ;
rdf:predicate up:annotation ;
rdf:object ?annotation146 .
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up:source unirule:MF_01220 ;
rdf:subject ?pfs152 ;
rdf:predicate up:annotation ;
rdf:object ?annotation153 .
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rdf:subject ?pfs152 ;
rdf:predicate up:annotation ;
rdf:object ?annotation153 .
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up:source unirule:MF_01220 ;
rdf:subject ?pfs159 ;
rdf:predicate up:annotation ;
rdf:object ?annotation160 .
_:430411 a rdf:Statement ;
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rdf:subject ?pfs159 ;
rdf:predicate up:annotation ;
rdf:object ?annotation160 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01220
#Rule MF_01220 Created by:? on:2005-02-28 Modified by:Catherine Rivoire on:2025-06-12
{
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01220_B .
?thisOrganism rdfs:subClassOf+ taxon:2 .
} UNION {
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01220_A .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
}
BIND(URI(CONCAT(STR(?this), '#MF_01220a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01220a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01220a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01220a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01220a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01220a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01220a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_01220a10')) AS ?annotation10) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch170 faldo:location ?templateMotifSequenceMatchRegionQ97ZE2171 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ97ZE2173 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ97ZE2MF_01220_A166 .
?templateMotifSequenceMatchRegionQ97ZE2171 faldo:begin ?templateMotifSequenceMatchBeginQ97ZE2172 .
?templateMotifSequenceMatchBeginQ97ZE2172 faldo:position ?templateMotifSequenceMatchBeginPositionQ97ZE2167 ;
faldo:reference isoform:Q97ZE2-1 .
?templateMotifSequenceProfileAlignmentOperationQ97ZE2173 edam:has_input signature:MF_01220_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch174 faldo:location ?targetMotifMatchRegionMatch175 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01220_A177 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ97ZE2MF_01220_A168 .
?targetMotifMatchRegionMatch175 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01220_A176 .
?targetMotifMatchRegionMatchBeginMF_01220_A176 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01220_A169 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01220_A177 edam:has_input signature:MF_01220_A ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFT_12) .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ97ZE2MF_01220_A166, 1, (STRLEN(?templateMotifCigarQ97ZE2MF_01220_A166) - STRLEN(REPLACE(?templateMotifCigarQ97ZE2MF_01220_A166, CONCAT('^(?:-*[^-]){', STR(((7 - ?templateMotifSequenceMatchBeginPositionQ97ZE2167) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1178) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ97ZE2MF_01220_A168, 1, (STRLEN(?targetMotifMatchCigarQ97ZE2MF_01220_A168) - STRLEN(REPLACE(?targetMotifMatchCigarQ97ZE2MF_01220_A168, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1178), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ97ZE2MF_01220_A168, 1, (STRLEN(?targetMotifMatchCigarQ97ZE2MF_01220_A168) - STRLEN(REPLACE(?targetMotifMatchCigarQ97ZE2MF_01220_A168, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1178), '}'), '')))), '[^-]', ''))) AS ?step2179) .
BIND(((?step2179 + ?targetMotifMatchRegionMatchBeginPositionMF_01220_A169) - 1) AS ?thisPositionOn18) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ97ZE2MF_01220_A166, 1, (STRLEN(?templateMotifCigarQ97ZE2MF_01220_A166) - STRLEN(REPLACE(?templateMotifCigarQ97ZE2MF_01220_A166, CONCAT('^(?:-*[^-]){', STR(((11 - ?templateMotifSequenceMatchBeginPositionQ97ZE2167) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1180) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ97ZE2MF_01220_A168, 1, (STRLEN(?targetMotifMatchCigarQ97ZE2MF_01220_A168) - STRLEN(REPLACE(?targetMotifMatchCigarQ97ZE2MF_01220_A168, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1180), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ97ZE2MF_01220_A168, 1, (STRLEN(?targetMotifMatchCigarQ97ZE2MF_01220_A168) - STRLEN(REPLACE(?targetMotifMatchCigarQ97ZE2MF_01220_A168, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1180), '}'), '')))), '[^-]', ''))) AS ?step2181) .
BIND(((?step2181 + ?targetMotifMatchRegionMatchBeginPositionMF_01220_A169) - 1) AS ?thisPositionOn19) .
BIND(?this AS ?pfs1t182) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb15) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse16) .
FILTER (REGEX('K[ARNDCQEGHILKMFPSTWYVBZJUOX][ST]G[KRS]', SUBSTR(?thisSequenceValue, ?thisPositionOn18, (?thisPositionOn19 - ?thisPositionOn18)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01220a14')) AS ?annotation14) .
BIND(?this AS ?pfs13) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch187 faldo:location ?templateMotifSequenceMatchRegionP0A7E9188 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A7E9190 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A7E9MF_01220_B183 .
?templateMotifSequenceMatchRegionP0A7E9188 faldo:begin ?templateMotifSequenceMatchBeginP0A7E9189 .
?templateMotifSequenceMatchBeginP0A7E9189 faldo:position ?templateMotifSequenceMatchBeginPositionP0A7E9184 ;
faldo:reference isoform:P0A7E9-1 .
?templateMotifSequenceProfileAlignmentOperationP0A7E9190 edam:has_input signature:MF_01220_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch191 faldo:location ?targetMotifMatchRegionMatch192 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01220_B194 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A7E9MF_01220_B185 .
?targetMotifMatchRegionMatch192 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01220_B193 .
?targetMotifMatchRegionMatchBeginMF_01220_B193 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01220_B186 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01220_B194 edam:has_input signature:MF_01220_B ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFT_3) .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A7E9MF_01220_B183, 1, (STRLEN(?templateMotifCigarP0A7E9MF_01220_B183) - STRLEN(REPLACE(?templateMotifCigarP0A7E9MF_01220_B183, CONCAT('^(?:-*[^-]){', STR(((23 - ?templateMotifSequenceMatchBeginPositionP0A7E9184) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1195) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A7E9MF_01220_B185, 1, (STRLEN(?targetMotifMatchCigarP0A7E9MF_01220_B185) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7E9MF_01220_B185, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1195), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A7E9MF_01220_B185, 1, (STRLEN(?targetMotifMatchCigarP0A7E9MF_01220_B185) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7E9MF_01220_B185, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1195), '}'), '')))), '[^-]', ''))) AS ?step2196) .
BIND(((?step2196 + ?targetMotifMatchRegionMatchBeginPositionMF_01220_B186) - 1) AS ?thisPositionOn24) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A7E9MF_01220_B183, 1, (STRLEN(?templateMotifCigarP0A7E9MF_01220_B183) - STRLEN(REPLACE(?templateMotifCigarP0A7E9MF_01220_B183, CONCAT('^(?:-*[^-]){', STR(((28 - ?templateMotifSequenceMatchBeginPositionP0A7E9184) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1197) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A7E9MF_01220_B185, 1, (STRLEN(?targetMotifMatchCigarP0A7E9MF_01220_B185) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7E9MF_01220_B185, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1197), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A7E9MF_01220_B185, 1, (STRLEN(?targetMotifMatchCigarP0A7E9MF_01220_B185) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7E9MF_01220_B185, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1197), '}'), '')))), '[^-]', ''))) AS ?step2198) .
BIND(((?step2198 + ?targetMotifMatchRegionMatchBeginPositionMF_01220_B186) - 1) AS ?thisPositionOn25) .
BIND(?this AS ?pfs2t199) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb22) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse23) .
FILTER (REGEX('G[ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX]G[ARNDCQEGHILKMFPSTWYVBZJUOX]G', SUBSTR(?thisSequenceValue, ?thisPositionOn24, (?thisPositionOn25 - ?thisPositionOn24)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01220a21')) AS ?annotation21) .
BIND(?this AS ?pfs20) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch204 faldo:location ?templateMotifSequenceMatchRegionQ8U122205 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8U122207 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8U122MF_01220_A200 .
?templateMotifSequenceMatchRegionQ8U122205 faldo:begin ?templateMotifSequenceMatchBeginQ8U122206 .
?templateMotifSequenceMatchBeginQ8U122206 faldo:position ?templateMotifSequenceMatchBeginPositionQ8U122201 ;
faldo:reference isoform:Q8U122-1 .
?templateMotifSequenceProfileAlignmentOperationQ8U122207 edam:has_input signature:MF_01220_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch208 faldo:location ?targetMotifMatchRegionMatch209 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01220_A211 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8U122MF_01220_A202 .
?targetMotifMatchRegionMatch209 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01220_A210 .
?targetMotifMatchRegionMatchBeginMF_01220_A210 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01220_A203 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01220_A211 edam:has_input signature:MF_01220_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8U122MF_01220_A200, 1, (STRLEN(?templateMotifCigarQ8U122MF_01220_A200) - STRLEN(REPLACE(?templateMotifCigarQ8U122MF_01220_A200, CONCAT('^(?:-*[^-]){', STR(((9 - ?templateMotifSequenceMatchBeginPositionQ8U122201) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1212) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8U122MF_01220_A202, 1, (STRLEN(?targetMotifMatchCigarQ8U122MF_01220_A202) - STRLEN(REPLACE(?targetMotifMatchCigarQ8U122MF_01220_A202, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1212), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8U122MF_01220_A202, 1, (STRLEN(?targetMotifMatchCigarQ8U122MF_01220_A202) - STRLEN(REPLACE(?targetMotifMatchCigarQ8U122MF_01220_A202, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1212), '}'), '')))), '[^-]', ''))) AS ?step2213) .
BIND(((?step2213 + ?targetMotifMatchRegionMatchBeginPositionMF_01220_A203) - 1) AS ?thisPositionOn31) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8U122MF_01220_A200, 1, (STRLEN(?templateMotifCigarQ8U122MF_01220_A200) - STRLEN(REPLACE(?templateMotifCigarQ8U122MF_01220_A200, CONCAT('^(?:-*[^-]){', STR(((10 - ?templateMotifSequenceMatchBeginPositionQ8U122201) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1214) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8U122MF_01220_A202, 1, (STRLEN(?targetMotifMatchCigarQ8U122MF_01220_A202) - STRLEN(REPLACE(?targetMotifMatchCigarQ8U122MF_01220_A202, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1214), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8U122MF_01220_A202, 1, (STRLEN(?targetMotifMatchCigarQ8U122MF_01220_A202) - STRLEN(REPLACE(?targetMotifMatchCigarQ8U122MF_01220_A202, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1214), '}'), '')))), '[^-]', ''))) AS ?step2215) .
BIND(((?step2215 + ?targetMotifMatchRegionMatchBeginPositionMF_01220_A203) - 1) AS ?thisPositionOn32) .
BIND(?this AS ?pfs3t216) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb28) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse29) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn31, (?thisPositionOn32 - ?thisPositionOn31)) = 'GS')) .
BIND(URI(CONCAT(STR(?this), '#MF_01220a27')) AS ?annotation27) .
BIND(?this AS ?pfs26) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch221 faldo:location ?templateMotifSequenceMatchRegionQ97ZE2222 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ97ZE2224 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ97ZE2MF_01220_A217 .
?templateMotifSequenceMatchRegionQ97ZE2222 faldo:begin ?templateMotifSequenceMatchBeginQ97ZE2223 .
?templateMotifSequenceMatchBeginQ97ZE2223 faldo:position ?templateMotifSequenceMatchBeginPositionQ97ZE2218 ;
faldo:reference isoform:Q97ZE2-1 .
?templateMotifSequenceProfileAlignmentOperationQ97ZE2224 edam:has_input signature:MF_01220_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch225 faldo:location ?targetMotifMatchRegionMatch226 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01220_A228 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ97ZE2MF_01220_A219 .
?targetMotifMatchRegionMatch226 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01220_A227 .
?targetMotifMatchRegionMatchBeginMF_01220_A227 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01220_A220 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01220_A228 edam:has_input signature:MF_01220_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ97ZE2MF_01220_A217, 1, (STRLEN(?templateMotifCigarQ97ZE2MF_01220_A217) - STRLEN(REPLACE(?templateMotifCigarQ97ZE2MF_01220_A217, CONCAT('^(?:-*[^-]){', STR(((114 - ?templateMotifSequenceMatchBeginPositionQ97ZE2218) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1229) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ97ZE2MF_01220_A219, 1, (STRLEN(?targetMotifMatchCigarQ97ZE2MF_01220_A219) - STRLEN(REPLACE(?targetMotifMatchCigarQ97ZE2MF_01220_A219, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1229), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ97ZE2MF_01220_A219, 1, (STRLEN(?targetMotifMatchCigarQ97ZE2MF_01220_A219) - STRLEN(REPLACE(?targetMotifMatchCigarQ97ZE2MF_01220_A219, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1229), '}'), '')))), '[^-]', ''))) AS ?step2230) .
BIND(((?step2230 + ?targetMotifMatchRegionMatchBeginPositionMF_01220_A220) - 1) AS ?thisPositionOn38) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ97ZE2MF_01220_A217, 1, (STRLEN(?templateMotifCigarQ97ZE2MF_01220_A217) - STRLEN(REPLACE(?templateMotifCigarQ97ZE2MF_01220_A217, CONCAT('^(?:-*[^-]){', STR(((120 - ?templateMotifSequenceMatchBeginPositionQ97ZE2218) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1231) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ97ZE2MF_01220_A219, 1, (STRLEN(?targetMotifMatchCigarQ97ZE2MF_01220_A219) - STRLEN(REPLACE(?targetMotifMatchCigarQ97ZE2MF_01220_A219, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1231), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ97ZE2MF_01220_A219, 1, (STRLEN(?targetMotifMatchCigarQ97ZE2MF_01220_A219) - STRLEN(REPLACE(?targetMotifMatchCigarQ97ZE2MF_01220_A219, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1231), '}'), '')))), '[^-]', ''))) AS ?step2232) .
BIND(((?step2232 + ?targetMotifMatchRegionMatchBeginPositionMF_01220_A220) - 1) AS ?thisPositionOn39) .
BIND(?this AS ?pfs4t233) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfsb35) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfse36) .
FILTER ((BOUND(?thisPositionOn38) && BOUND(?thisPositionOn39))) .
BIND(URI(CONCAT(STR(?this), '#MF_01220a34')) AS ?annotation34) .
BIND(?this AS ?pfs33) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch238 faldo:location ?templateMotifSequenceMatchRegionQ97ZE2239 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ97ZE2241 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ97ZE2MF_01220_A234 .
?templateMotifSequenceMatchRegionQ97ZE2239 faldo:begin ?templateMotifSequenceMatchBeginQ97ZE2240 .
?templateMotifSequenceMatchBeginQ97ZE2240 faldo:position ?templateMotifSequenceMatchBeginPositionQ97ZE2235 ;
faldo:reference isoform:Q97ZE2-1 .
?templateMotifSequenceProfileAlignmentOperationQ97ZE2241 edam:has_input signature:MF_01220_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch242 faldo:location ?targetMotifMatchRegionMatch243 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01220_A245 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ97ZE2MF_01220_A236 .
?targetMotifMatchRegionMatch243 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01220_A244 .
?targetMotifMatchRegionMatchBeginMF_01220_A244 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01220_A237 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01220_A245 edam:has_input signature:MF_01220_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ97ZE2MF_01220_A234, 1, (STRLEN(?templateMotifCigarQ97ZE2MF_01220_A234) - STRLEN(REPLACE(?templateMotifCigarQ97ZE2MF_01220_A234, CONCAT('^(?:-*[^-]){', STR(((44 - ?templateMotifSequenceMatchBeginPositionQ97ZE2235) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1246) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ97ZE2MF_01220_A236, 1, (STRLEN(?targetMotifMatchCigarQ97ZE2MF_01220_A236) - STRLEN(REPLACE(?targetMotifMatchCigarQ97ZE2MF_01220_A236, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1246), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ97ZE2MF_01220_A236, 1, (STRLEN(?targetMotifMatchCigarQ97ZE2MF_01220_A236) - STRLEN(REPLACE(?targetMotifMatchCigarQ97ZE2MF_01220_A236, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1246), '}'), '')))), '[^-]', ''))) AS ?step2247) .
BIND(((?step2247 + ?targetMotifMatchRegionMatchBeginPositionMF_01220_A237) - 1) AS ?thisPositionOn45) .
BIND(?thisPositionOn45 AS ?thisPositionOn46) .
BIND(?this AS ?pfs4t248) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfsb42) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfse43) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn45, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_01220a41')) AS ?annotation41) .
BIND(?this AS ?pfs40) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch253 faldo:location ?templateMotifSequenceMatchRegionQ97ZE2254 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ97ZE2256 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ97ZE2MF_01220_A249 .
?templateMotifSequenceMatchRegionQ97ZE2254 faldo:begin ?templateMotifSequenceMatchBeginQ97ZE2255 .
?templateMotifSequenceMatchBeginQ97ZE2255 faldo:position ?templateMotifSequenceMatchBeginPositionQ97ZE2250 ;
faldo:reference isoform:Q97ZE2-1 .
?templateMotifSequenceProfileAlignmentOperationQ97ZE2256 edam:has_input signature:MF_01220_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch257 faldo:location ?targetMotifMatchRegionMatch258 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01220_A260 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ97ZE2MF_01220_A251 .
?targetMotifMatchRegionMatch258 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01220_A259 .
?targetMotifMatchRegionMatchBeginMF_01220_A259 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01220_A252 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01220_A260 edam:has_input signature:MF_01220_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ97ZE2MF_01220_A249, 1, (STRLEN(?templateMotifCigarQ97ZE2MF_01220_A249) - STRLEN(REPLACE(?templateMotifCigarQ97ZE2MF_01220_A249, CONCAT('^(?:-*[^-]){', STR(((66 - ?templateMotifSequenceMatchBeginPositionQ97ZE2250) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1261) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ97ZE2MF_01220_A251, 1, (STRLEN(?targetMotifMatchCigarQ97ZE2MF_01220_A251) - STRLEN(REPLACE(?targetMotifMatchCigarQ97ZE2MF_01220_A251, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1261), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ97ZE2MF_01220_A251, 1, (STRLEN(?targetMotifMatchCigarQ97ZE2MF_01220_A251) - STRLEN(REPLACE(?targetMotifMatchCigarQ97ZE2MF_01220_A251, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1261), '}'), '')))), '[^-]', ''))) AS ?step2262) .
BIND(((?step2262 + ?targetMotifMatchRegionMatchBeginPositionMF_01220_A252) - 1) AS ?thisPositionOn52) .
BIND(?thisPositionOn52 AS ?thisPositionOn53) .
BIND(?this AS ?pfs4t263) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfsb49) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfse50) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn52, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01220a48')) AS ?annotation48) .
BIND(?this AS ?pfs47) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch268 faldo:location ?templateMotifSequenceMatchRegionQ97ZE2269 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ97ZE2271 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ97ZE2MF_01220_A264 .
?templateMotifSequenceMatchRegionQ97ZE2269 faldo:begin ?templateMotifSequenceMatchBeginQ97ZE2270 .
?templateMotifSequenceMatchBeginQ97ZE2270 faldo:position ?templateMotifSequenceMatchBeginPositionQ97ZE2265 ;
faldo:reference isoform:Q97ZE2-1 .
?templateMotifSequenceProfileAlignmentOperationQ97ZE2271 edam:has_input signature:MF_01220_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch272 faldo:location ?targetMotifMatchRegionMatch273 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01220_A275 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ97ZE2MF_01220_A266 .
?targetMotifMatchRegionMatch273 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01220_A274 .
?targetMotifMatchRegionMatchBeginMF_01220_A274 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01220_A267 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01220_A275 edam:has_input signature:MF_01220_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ97ZE2MF_01220_A264, 1, (STRLEN(?templateMotifCigarQ97ZE2MF_01220_A264) - STRLEN(REPLACE(?templateMotifCigarQ97ZE2MF_01220_A264, CONCAT('^(?:-*[^-]){', STR(((45 - ?templateMotifSequenceMatchBeginPositionQ97ZE2265) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1276) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ97ZE2MF_01220_A266, 1, (STRLEN(?targetMotifMatchCigarQ97ZE2MF_01220_A266) - STRLEN(REPLACE(?targetMotifMatchCigarQ97ZE2MF_01220_A266, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1276), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ97ZE2MF_01220_A266, 1, (STRLEN(?targetMotifMatchCigarQ97ZE2MF_01220_A266) - STRLEN(REPLACE(?targetMotifMatchCigarQ97ZE2MF_01220_A266, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1276), '}'), '')))), '[^-]', ''))) AS ?step2277) .
BIND(((?step2277 + ?targetMotifMatchRegionMatchBeginPositionMF_01220_A267) - 1) AS ?thisPositionOn59) .
BIND(?thisPositionOn59 AS ?thisPositionOn60) .
BIND(?this AS ?pfs4t278) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfsb56) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfse57) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn59, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_01220a55')) AS ?annotation55) .
BIND(?this AS ?pfs54) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch283 faldo:location ?templateMotifSequenceMatchRegionQ97ZE2284 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ97ZE2286 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ97ZE2MF_01220_A279 .
?templateMotifSequenceMatchRegionQ97ZE2284 faldo:begin ?templateMotifSequenceMatchBeginQ97ZE2285 .
?templateMotifSequenceMatchBeginQ97ZE2285 faldo:position ?templateMotifSequenceMatchBeginPositionQ97ZE2280 ;
faldo:reference isoform:Q97ZE2-1 .
?templateMotifSequenceProfileAlignmentOperationQ97ZE2286 edam:has_input signature:MF_01220_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch287 faldo:location ?targetMotifMatchRegionMatch288 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01220_A290 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ97ZE2MF_01220_A281 .
?targetMotifMatchRegionMatch288 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01220_A289 .
?targetMotifMatchRegionMatchBeginMF_01220_A289 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01220_A282 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01220_A290 edam:has_input signature:MF_01220_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ97ZE2MF_01220_A279, 1, (STRLEN(?templateMotifCigarQ97ZE2MF_01220_A279) - STRLEN(REPLACE(?templateMotifCigarQ97ZE2MF_01220_A279, CONCAT('^(?:-*[^-]){', STR(((49 - ?templateMotifSequenceMatchBeginPositionQ97ZE2280) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1291) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ97ZE2MF_01220_A281, 1, (STRLEN(?targetMotifMatchCigarQ97ZE2MF_01220_A281) - STRLEN(REPLACE(?targetMotifMatchCigarQ97ZE2MF_01220_A281, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1291), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ97ZE2MF_01220_A281, 1, (STRLEN(?targetMotifMatchCigarQ97ZE2MF_01220_A281) - STRLEN(REPLACE(?targetMotifMatchCigarQ97ZE2MF_01220_A281, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1291), '}'), '')))), '[^-]', ''))) AS ?step2292) .
BIND(((?step2292 + ?targetMotifMatchRegionMatchBeginPositionMF_01220_A282) - 1) AS ?thisPositionOn66) .
BIND(?thisPositionOn66 AS ?thisPositionOn67) .
BIND(?this AS ?pfs4t293) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfsb63) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfse64) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn66, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01220a62')) AS ?annotation62) .
BIND(?this AS ?pfs61) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch298 faldo:location ?templateMotifSequenceMatchRegionQ97ZE2299 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ97ZE2301 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ97ZE2MF_01220_A294 .
?templateMotifSequenceMatchRegionQ97ZE2299 faldo:begin ?templateMotifSequenceMatchBeginQ97ZE2300 .
?templateMotifSequenceMatchBeginQ97ZE2300 faldo:position ?templateMotifSequenceMatchBeginPositionQ97ZE2295 ;
faldo:reference isoform:Q97ZE2-1 .
?templateMotifSequenceProfileAlignmentOperationQ97ZE2301 edam:has_input signature:MF_01220_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch302 faldo:location ?targetMotifMatchRegionMatch303 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01220_A305 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ97ZE2MF_01220_A296 .
?targetMotifMatchRegionMatch303 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01220_A304 .
?targetMotifMatchRegionMatchBeginMF_01220_A304 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01220_A297 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01220_A305 edam:has_input signature:MF_01220_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ97ZE2MF_01220_A294, 1, (STRLEN(?templateMotifCigarQ97ZE2MF_01220_A294) - STRLEN(REPLACE(?templateMotifCigarQ97ZE2MF_01220_A294, CONCAT('^(?:-*[^-]){', STR(((140 - ?templateMotifSequenceMatchBeginPositionQ97ZE2295) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1306) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ97ZE2MF_01220_A296, 1, (STRLEN(?targetMotifMatchCigarQ97ZE2MF_01220_A296) - STRLEN(REPLACE(?targetMotifMatchCigarQ97ZE2MF_01220_A296, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1306), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ97ZE2MF_01220_A296, 1, (STRLEN(?targetMotifMatchCigarQ97ZE2MF_01220_A296) - STRLEN(REPLACE(?targetMotifMatchCigarQ97ZE2MF_01220_A296, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1306), '}'), '')))), '[^-]', ''))) AS ?step2307) .
BIND(((?step2307 + ?targetMotifMatchRegionMatchBeginPositionMF_01220_A297) - 1) AS ?thisPositionOn73) .
BIND(?thisPositionOn73 AS ?thisPositionOn74) .
BIND(?this AS ?pfs4t308) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfsb70) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn74))) AS ?pfse71) .
FILTER (REGEX('[TS]', SUBSTR(?thisSequenceValue, ?thisPositionOn73, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01220a69')) AS ?annotation69) .
BIND(?this AS ?pfs68) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch313 faldo:location ?templateMotifSequenceMatchRegionQ97ZE2314 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ97ZE2316 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ97ZE2MF_01220_A309 .
?templateMotifSequenceMatchRegionQ97ZE2314 faldo:begin ?templateMotifSequenceMatchBeginQ97ZE2315 .
?templateMotifSequenceMatchBeginQ97ZE2315 faldo:position ?templateMotifSequenceMatchBeginPositionQ97ZE2310 ;
faldo:reference isoform:Q97ZE2-1 .
?templateMotifSequenceProfileAlignmentOperationQ97ZE2316 edam:has_input signature:MF_01220_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch317 faldo:location ?targetMotifMatchRegionMatch318 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01220_A320 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ97ZE2MF_01220_A311 .
?targetMotifMatchRegionMatch318 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01220_A319 .
?targetMotifMatchRegionMatchBeginMF_01220_A319 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01220_A312 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01220_A320 edam:has_input signature:MF_01220_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ97ZE2MF_01220_A309, 1, (STRLEN(?templateMotifCigarQ97ZE2MF_01220_A309) - STRLEN(REPLACE(?templateMotifCigarQ97ZE2MF_01220_A309, CONCAT('^(?:-*[^-]){', STR(((141 - ?templateMotifSequenceMatchBeginPositionQ97ZE2310) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1321) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ97ZE2MF_01220_A311, 1, (STRLEN(?targetMotifMatchCigarQ97ZE2MF_01220_A311) - STRLEN(REPLACE(?targetMotifMatchCigarQ97ZE2MF_01220_A311, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1321), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ97ZE2MF_01220_A311, 1, (STRLEN(?targetMotifMatchCigarQ97ZE2MF_01220_A311) - STRLEN(REPLACE(?targetMotifMatchCigarQ97ZE2MF_01220_A311, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1321), '}'), '')))), '[^-]', ''))) AS ?step2322) .
BIND(((?step2322 + ?targetMotifMatchRegionMatchBeginPositionMF_01220_A312) - 1) AS ?thisPositionOn80) .
BIND(?thisPositionOn80 AS ?thisPositionOn81) .
BIND(?this AS ?pfs4t323) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn80))) AS ?pfsb77) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn81))) AS ?pfse78) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn80, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_01220a76')) AS ?annotation76) .
BIND(?this AS ?pfs75) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch328 faldo:location ?templateMotifSequenceMatchRegionQ97ZE2329 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ97ZE2331 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ97ZE2MF_01220_A324 .
?templateMotifSequenceMatchRegionQ97ZE2329 faldo:begin ?templateMotifSequenceMatchBeginQ97ZE2330 .
?templateMotifSequenceMatchBeginQ97ZE2330 faldo:position ?templateMotifSequenceMatchBeginPositionQ97ZE2325 ;
faldo:reference isoform:Q97ZE2-1 .
?templateMotifSequenceProfileAlignmentOperationQ97ZE2331 edam:has_input signature:MF_01220_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch332 faldo:location ?targetMotifMatchRegionMatch333 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01220_A335 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ97ZE2MF_01220_A326 .
?targetMotifMatchRegionMatch333 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01220_A334 .
?targetMotifMatchRegionMatchBeginMF_01220_A334 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01220_A327 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01220_A335 edam:has_input signature:MF_01220_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ97ZE2MF_01220_A324, 1, (STRLEN(?templateMotifCigarQ97ZE2MF_01220_A324) - STRLEN(REPLACE(?templateMotifCigarQ97ZE2MF_01220_A324, CONCAT('^(?:-*[^-]){', STR(((146 - ?templateMotifSequenceMatchBeginPositionQ97ZE2325) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1336) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ97ZE2MF_01220_A326, 1, (STRLEN(?targetMotifMatchCigarQ97ZE2MF_01220_A326) - STRLEN(REPLACE(?targetMotifMatchCigarQ97ZE2MF_01220_A326, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1336), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ97ZE2MF_01220_A326, 1, (STRLEN(?targetMotifMatchCigarQ97ZE2MF_01220_A326) - STRLEN(REPLACE(?targetMotifMatchCigarQ97ZE2MF_01220_A326, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1336), '}'), '')))), '[^-]', ''))) AS ?step2337) .
BIND(((?step2337 + ?targetMotifMatchRegionMatchBeginPositionMF_01220_A327) - 1) AS ?thisPositionOn87) .
BIND(?thisPositionOn87 AS ?thisPositionOn88) .
BIND(?this AS ?pfs4t338) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn87))) AS ?pfsb84) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn88))) AS ?pfse85) .
FILTER (REGEX('[YF]', SUBSTR(?thisSequenceValue, ?thisPositionOn87, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01220a83')) AS ?annotation83) .
BIND(?this AS ?pfs82) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch343 faldo:location ?templateMotifSequenceMatchRegionQ97ZE2344 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ97ZE2346 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ97ZE2MF_01220_A339 .
?templateMotifSequenceMatchRegionQ97ZE2344 faldo:begin ?templateMotifSequenceMatchBeginQ97ZE2345 .
?templateMotifSequenceMatchBeginQ97ZE2345 faldo:position ?templateMotifSequenceMatchBeginPositionQ97ZE2340 ;
faldo:reference isoform:Q97ZE2-1 .
?templateMotifSequenceProfileAlignmentOperationQ97ZE2346 edam:has_input signature:MF_01220_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch347 faldo:location ?targetMotifMatchRegionMatch348 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01220_A350 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ97ZE2MF_01220_A341 .
?targetMotifMatchRegionMatch348 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01220_A349 .
?targetMotifMatchRegionMatchBeginMF_01220_A349 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01220_A342 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01220_A350 edam:has_input signature:MF_01220_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ97ZE2MF_01220_A339, 1, (STRLEN(?templateMotifCigarQ97ZE2MF_01220_A339) - STRLEN(REPLACE(?templateMotifCigarQ97ZE2MF_01220_A339, CONCAT('^(?:-*[^-]){', STR(((149 - ?templateMotifSequenceMatchBeginPositionQ97ZE2340) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1351) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ97ZE2MF_01220_A341, 1, (STRLEN(?targetMotifMatchCigarQ97ZE2MF_01220_A341) - STRLEN(REPLACE(?targetMotifMatchCigarQ97ZE2MF_01220_A341, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1351), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ97ZE2MF_01220_A341, 1, (STRLEN(?targetMotifMatchCigarQ97ZE2MF_01220_A341) - STRLEN(REPLACE(?targetMotifMatchCigarQ97ZE2MF_01220_A341, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1351), '}'), '')))), '[^-]', ''))) AS ?step2352) .
BIND(((?step2352 + ?targetMotifMatchRegionMatchBeginPositionMF_01220_A342) - 1) AS ?thisPositionOn94) .
BIND(?thisPositionOn94 AS ?thisPositionOn95) .
BIND(?this AS ?pfs4t353) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn94))) AS ?pfsb91) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn95))) AS ?pfse92) .
FILTER (REGEX('[DE]', SUBSTR(?thisSequenceValue, ?thisPositionOn94, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01220a90')) AS ?annotation90) .
BIND(?this AS ?pfs89) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch358 faldo:location ?templateMotifSequenceMatchRegionP0A7E9359 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A7E9361 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A7E9MF_01220_B354 .
?templateMotifSequenceMatchRegionP0A7E9359 faldo:begin ?templateMotifSequenceMatchBeginP0A7E9360 .
?templateMotifSequenceMatchBeginP0A7E9360 faldo:position ?templateMotifSequenceMatchBeginPositionP0A7E9355 ;
faldo:reference isoform:P0A7E9-1 .
?templateMotifSequenceProfileAlignmentOperationP0A7E9361 edam:has_input signature:MF_01220_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch362 faldo:location ?targetMotifMatchRegionMatch363 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01220_B365 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A7E9MF_01220_B356 .
?targetMotifMatchRegionMatch363 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01220_B364 .
?targetMotifMatchRegionMatchBeginMF_01220_B364 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01220_B357 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01220_B365 edam:has_input signature:MF_01220_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A7E9MF_01220_B354, 1, (STRLEN(?templateMotifCigarP0A7E9MF_01220_B354) - STRLEN(REPLACE(?templateMotifCigarP0A7E9MF_01220_B354, CONCAT('^(?:-*[^-]){', STR(((138 - ?templateMotifSequenceMatchBeginPositionP0A7E9355) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1366) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A7E9MF_01220_B356, 1, (STRLEN(?targetMotifMatchCigarP0A7E9MF_01220_B356) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7E9MF_01220_B356, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1366), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A7E9MF_01220_B356, 1, (STRLEN(?targetMotifMatchCigarP0A7E9MF_01220_B356) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7E9MF_01220_B356, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1366), '}'), '')))), '[^-]', ''))) AS ?step2367) .
BIND(((?step2367 + ?targetMotifMatchRegionMatchBeginPositionMF_01220_B357) - 1) AS ?thisPositionOn101) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A7E9MF_01220_B354, 1, (STRLEN(?templateMotifCigarP0A7E9MF_01220_B354) - STRLEN(REPLACE(?templateMotifCigarP0A7E9MF_01220_B354, CONCAT('^(?:-*[^-]){', STR(((145 - ?templateMotifSequenceMatchBeginPositionP0A7E9355) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1368) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A7E9MF_01220_B356, 1, (STRLEN(?targetMotifMatchCigarP0A7E9MF_01220_B356) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7E9MF_01220_B356, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1368), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A7E9MF_01220_B356, 1, (STRLEN(?targetMotifMatchCigarP0A7E9MF_01220_B356) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7E9MF_01220_B356, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1368), '}'), '')))), '[^-]', ''))) AS ?step2369) .
BIND(((?step2369 + ?targetMotifMatchRegionMatchBeginPositionMF_01220_B357) - 1) AS ?thisPositionOn102) .
BIND(?this AS ?pfs5t370) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn101))) AS ?pfsb98) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn102))) AS ?pfse99) .
FILTER ((BOUND(?thisPositionOn101) && BOUND(?thisPositionOn102))) .
BIND(URI(CONCAT(STR(?this), '#MF_01220a97')) AS ?annotation97) .
BIND(?this AS ?pfs96) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch375 faldo:location ?templateMotifSequenceMatchRegionP0A7E9376 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A7E9378 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A7E9MF_01220_B371 .
?templateMotifSequenceMatchRegionP0A7E9376 faldo:begin ?templateMotifSequenceMatchBeginP0A7E9377 .
?templateMotifSequenceMatchBeginP0A7E9377 faldo:position ?templateMotifSequenceMatchBeginPositionP0A7E9372 ;
faldo:reference isoform:P0A7E9-1 .
?templateMotifSequenceProfileAlignmentOperationP0A7E9378 edam:has_input signature:MF_01220_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch379 faldo:location ?targetMotifMatchRegionMatch380 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01220_B382 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A7E9MF_01220_B373 .
?targetMotifMatchRegionMatch380 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01220_B381 .
?targetMotifMatchRegionMatchBeginMF_01220_B381 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01220_B374 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01220_B382 edam:has_input signature:MF_01220_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A7E9MF_01220_B371, 1, (STRLEN(?templateMotifCigarP0A7E9MF_01220_B371) - STRLEN(REPLACE(?templateMotifCigarP0A7E9MF_01220_B371, CONCAT('^(?:-*[^-]){', STR(((15 - ?templateMotifSequenceMatchBeginPositionP0A7E9372) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1383) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A7E9MF_01220_B373, 1, (STRLEN(?targetMotifMatchCigarP0A7E9MF_01220_B373) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7E9MF_01220_B373, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1383), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A7E9MF_01220_B373, 1, (STRLEN(?targetMotifMatchCigarP0A7E9MF_01220_B373) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7E9MF_01220_B373, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1383), '}'), '')))), '[^-]', ''))) AS ?step2384) .
BIND(((?step2384 + ?targetMotifMatchRegionMatchBeginPositionMF_01220_B374) - 1) AS ?thisPositionOn108) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A7E9MF_01220_B371, 1, (STRLEN(?templateMotifCigarP0A7E9MF_01220_B371) - STRLEN(REPLACE(?templateMotifCigarP0A7E9MF_01220_B371, CONCAT('^(?:-*[^-]){', STR(((18 - ?templateMotifSequenceMatchBeginPositionP0A7E9372) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1385) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A7E9MF_01220_B373, 1, (STRLEN(?targetMotifMatchCigarP0A7E9MF_01220_B373) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7E9MF_01220_B373, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1385), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A7E9MF_01220_B373, 1, (STRLEN(?targetMotifMatchCigarP0A7E9MF_01220_B373) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7E9MF_01220_B373, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1385), '}'), '')))), '[^-]', ''))) AS ?step2386) .
BIND(((?step2386 + ?targetMotifMatchRegionMatchBeginPositionMF_01220_B374) - 1) AS ?thisPositionOn109) .
BIND(?this AS ?pfs5t387) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn108))) AS ?pfsb105) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn109))) AS ?pfse106) .
FILTER (REGEX('K[ARNDCQEGHILKMFPSTWYVBZJUOX][SG]G', SUBSTR(?thisSequenceValue, ?thisPositionOn108, (?thisPositionOn109 - ?thisPositionOn108)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01220a104')) AS ?annotation104) .
BIND(?this AS ?pfs103) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch392 faldo:location ?templateMotifSequenceMatchRegionP0A7E9393 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A7E9395 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A7E9MF_01220_B388 .
?templateMotifSequenceMatchRegionP0A7E9393 faldo:begin ?templateMotifSequenceMatchBeginP0A7E9394 .
?templateMotifSequenceMatchBeginP0A7E9394 faldo:position ?templateMotifSequenceMatchBeginPositionP0A7E9389 ;
faldo:reference isoform:P0A7E9-1 .
?templateMotifSequenceProfileAlignmentOperationP0A7E9395 edam:has_input signature:MF_01220_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch396 faldo:location ?targetMotifMatchRegionMatch397 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01220_B399 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A7E9MF_01220_B390 .
?targetMotifMatchRegionMatch397 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01220_B398 .
?targetMotifMatchRegionMatchBeginMF_01220_B398 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01220_B391 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01220_B399 edam:has_input signature:MF_01220_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A7E9MF_01220_B388, 1, (STRLEN(?templateMotifCigarP0A7E9MF_01220_B388) - STRLEN(REPLACE(?templateMotifCigarP0A7E9MF_01220_B388, CONCAT('^(?:-*[^-]){', STR(((57 - ?templateMotifSequenceMatchBeginPositionP0A7E9389) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1400) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A7E9MF_01220_B390, 1, (STRLEN(?targetMotifMatchCigarP0A7E9MF_01220_B390) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7E9MF_01220_B390, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1400), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A7E9MF_01220_B390, 1, (STRLEN(?targetMotifMatchCigarP0A7E9MF_01220_B390) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7E9MF_01220_B390, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1400), '}'), '')))), '[^-]', ''))) AS ?step2401) .
BIND(((?step2401 + ?targetMotifMatchRegionMatchBeginPositionMF_01220_B391) - 1) AS ?thisPositionOn115) .
BIND(?thisPositionOn115 AS ?thisPositionOn116) .
BIND(?this AS ?pfs5t402) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn115))) AS ?pfsb112) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn116))) AS ?pfse113) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn115, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_01220a111')) AS ?annotation111) .
BIND(?this AS ?pfs110) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch407 faldo:location ?templateMotifSequenceMatchRegionP0A7E9408 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A7E9410 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A7E9MF_01220_B403 .
?templateMotifSequenceMatchRegionP0A7E9408 faldo:begin ?templateMotifSequenceMatchBeginP0A7E9409 .
?templateMotifSequenceMatchBeginP0A7E9409 faldo:position ?templateMotifSequenceMatchBeginPositionP0A7E9404 ;
faldo:reference isoform:P0A7E9-1 .
?templateMotifSequenceProfileAlignmentOperationP0A7E9410 edam:has_input signature:MF_01220_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch411 faldo:location ?targetMotifMatchRegionMatch412 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01220_B414 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A7E9MF_01220_B405 .
?targetMotifMatchRegionMatch412 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01220_B413 .
?targetMotifMatchRegionMatchBeginMF_01220_B413 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01220_B406 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01220_B414 edam:has_input signature:MF_01220_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A7E9MF_01220_B403, 1, (STRLEN(?templateMotifCigarP0A7E9MF_01220_B403) - STRLEN(REPLACE(?templateMotifCigarP0A7E9MF_01220_B403, CONCAT('^(?:-*[^-]){', STR(((58 - ?templateMotifSequenceMatchBeginPositionP0A7E9404) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1415) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A7E9MF_01220_B405, 1, (STRLEN(?targetMotifMatchCigarP0A7E9MF_01220_B405) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7E9MF_01220_B405, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1415), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A7E9MF_01220_B405, 1, (STRLEN(?targetMotifMatchCigarP0A7E9MF_01220_B405) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7E9MF_01220_B405, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1415), '}'), '')))), '[^-]', ''))) AS ?step2416) .
BIND(((?step2416 + ?targetMotifMatchRegionMatchBeginPositionMF_01220_B406) - 1) AS ?thisPositionOn122) .
BIND(?thisPositionOn122 AS ?thisPositionOn123) .
BIND(?this AS ?pfs5t417) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn122))) AS ?pfsb119) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn123))) AS ?pfse120) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn122, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_01220a118')) AS ?annotation118) .
BIND(?this AS ?pfs117) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch422 faldo:location ?templateMotifSequenceMatchRegionP0A7E9423 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A7E9425 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A7E9MF_01220_B418 .
?templateMotifSequenceMatchRegionP0A7E9423 faldo:begin ?templateMotifSequenceMatchBeginP0A7E9424 .
?templateMotifSequenceMatchBeginP0A7E9424 faldo:position ?templateMotifSequenceMatchBeginPositionP0A7E9419 ;
faldo:reference isoform:P0A7E9-1 .
?templateMotifSequenceProfileAlignmentOperationP0A7E9425 edam:has_input signature:MF_01220_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch426 faldo:location ?targetMotifMatchRegionMatch427 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01220_B429 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A7E9MF_01220_B420 .
?targetMotifMatchRegionMatch427 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01220_B428 .
?targetMotifMatchRegionMatchBeginMF_01220_B428 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01220_B421 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01220_B429 edam:has_input signature:MF_01220_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A7E9MF_01220_B418, 1, (STRLEN(?templateMotifCigarP0A7E9MF_01220_B418) - STRLEN(REPLACE(?templateMotifCigarP0A7E9MF_01220_B418, CONCAT('^(?:-*[^-]){', STR(((62 - ?templateMotifSequenceMatchBeginPositionP0A7E9419) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1430) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A7E9MF_01220_B420, 1, (STRLEN(?targetMotifMatchCigarP0A7E9MF_01220_B420) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7E9MF_01220_B420, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1430), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A7E9MF_01220_B420, 1, (STRLEN(?targetMotifMatchCigarP0A7E9MF_01220_B420) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7E9MF_01220_B420, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1430), '}'), '')))), '[^-]', ''))) AS ?step2431) .
BIND(((?step2431 + ?targetMotifMatchRegionMatchBeginPositionMF_01220_B421) - 1) AS ?thisPositionOn129) .
BIND(?thisPositionOn129 AS ?thisPositionOn130) .
BIND(?this AS ?pfs5t432) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn129))) AS ?pfsb126) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn130))) AS ?pfse127) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn129, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01220a125')) AS ?annotation125) .
BIND(?this AS ?pfs124) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch437 faldo:location ?templateMotifSequenceMatchRegionP0A7E9438 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A7E9440 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A7E9MF_01220_B433 .
?templateMotifSequenceMatchRegionP0A7E9438 faldo:begin ?templateMotifSequenceMatchBeginP0A7E9439 .
?templateMotifSequenceMatchBeginP0A7E9439 faldo:position ?templateMotifSequenceMatchBeginPositionP0A7E9434 ;
faldo:reference isoform:P0A7E9-1 .
?templateMotifSequenceProfileAlignmentOperationP0A7E9440 edam:has_input signature:MF_01220_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch441 faldo:location ?targetMotifMatchRegionMatch442 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01220_B444 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A7E9MF_01220_B435 .
?targetMotifMatchRegionMatch442 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01220_B443 .
?targetMotifMatchRegionMatchBeginMF_01220_B443 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01220_B436 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01220_B444 edam:has_input signature:MF_01220_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A7E9MF_01220_B433, 1, (STRLEN(?templateMotifCigarP0A7E9MF_01220_B433) - STRLEN(REPLACE(?templateMotifCigarP0A7E9MF_01220_B433, CONCAT('^(?:-*[^-]){', STR(((77 - ?templateMotifSequenceMatchBeginPositionP0A7E9434) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1445) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A7E9MF_01220_B435, 1, (STRLEN(?targetMotifMatchCigarP0A7E9MF_01220_B435) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7E9MF_01220_B435, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1445), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A7E9MF_01220_B435, 1, (STRLEN(?targetMotifMatchCigarP0A7E9MF_01220_B435) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7E9MF_01220_B435, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1445), '}'), '')))), '[^-]', ''))) AS ?step2446) .
BIND(((?step2446 + ?targetMotifMatchRegionMatchBeginPositionMF_01220_B436) - 1) AS ?thisPositionOn136) .
BIND(?thisPositionOn136 AS ?thisPositionOn137) .
BIND(?this AS ?pfs5t447) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn136))) AS ?pfsb133) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn137))) AS ?pfse134) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn136, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01220a132')) AS ?annotation132) .
BIND(?this AS ?pfs131) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch452 faldo:location ?templateMotifSequenceMatchRegionP0A7E9453 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A7E9455 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A7E9MF_01220_B448 .
?templateMotifSequenceMatchRegionP0A7E9453 faldo:begin ?templateMotifSequenceMatchBeginP0A7E9454 .
?templateMotifSequenceMatchBeginP0A7E9454 faldo:position ?templateMotifSequenceMatchBeginPositionP0A7E9449 ;
faldo:reference isoform:P0A7E9-1 .
?templateMotifSequenceProfileAlignmentOperationP0A7E9455 edam:has_input signature:MF_01220_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch456 faldo:location ?targetMotifMatchRegionMatch457 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01220_B459 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A7E9MF_01220_B450 .
?targetMotifMatchRegionMatch457 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01220_B458 .
?targetMotifMatchRegionMatchBeginMF_01220_B458 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01220_B451 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01220_B459 edam:has_input signature:MF_01220_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A7E9MF_01220_B448, 1, (STRLEN(?templateMotifCigarP0A7E9MF_01220_B448) - STRLEN(REPLACE(?templateMotifCigarP0A7E9MF_01220_B448, CONCAT('^(?:-*[^-]){', STR(((165 - ?templateMotifSequenceMatchBeginPositionP0A7E9449) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1460) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A7E9MF_01220_B450, 1, (STRLEN(?targetMotifMatchCigarP0A7E9MF_01220_B450) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7E9MF_01220_B450, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1460), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A7E9MF_01220_B450, 1, (STRLEN(?targetMotifMatchCigarP0A7E9MF_01220_B450) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7E9MF_01220_B450, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1460), '}'), '')))), '[^-]', ''))) AS ?step2461) .
BIND(((?step2461 + ?targetMotifMatchRegionMatchBeginPositionMF_01220_B451) - 1) AS ?thisPositionOn143) .
BIND(?thisPositionOn143 AS ?thisPositionOn144) .
BIND(?this AS ?pfs5t462) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn143))) AS ?pfsb140) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn144))) AS ?pfse141) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn143, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_01220a139')) AS ?annotation139) .
BIND(?this AS ?pfs138) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch467 faldo:location ?templateMotifSequenceMatchRegionP0A7E9468 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A7E9470 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A7E9MF_01220_B463 .
?templateMotifSequenceMatchRegionP0A7E9468 faldo:begin ?templateMotifSequenceMatchBeginP0A7E9469 .
?templateMotifSequenceMatchBeginP0A7E9469 faldo:position ?templateMotifSequenceMatchBeginPositionP0A7E9464 ;
faldo:reference isoform:P0A7E9-1 .
?templateMotifSequenceProfileAlignmentOperationP0A7E9470 edam:has_input signature:MF_01220_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch471 faldo:location ?targetMotifMatchRegionMatch472 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01220_B474 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A7E9MF_01220_B465 .
?targetMotifMatchRegionMatch472 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01220_B473 .
?targetMotifMatchRegionMatchBeginMF_01220_B473 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01220_B466 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01220_B474 edam:has_input signature:MF_01220_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A7E9MF_01220_B463, 1, (STRLEN(?templateMotifCigarP0A7E9MF_01220_B463) - STRLEN(REPLACE(?templateMotifCigarP0A7E9MF_01220_B463, CONCAT('^(?:-*[^-]){', STR(((166 - ?templateMotifSequenceMatchBeginPositionP0A7E9464) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1475) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A7E9MF_01220_B465, 1, (STRLEN(?targetMotifMatchCigarP0A7E9MF_01220_B465) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7E9MF_01220_B465, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1475), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A7E9MF_01220_B465, 1, (STRLEN(?targetMotifMatchCigarP0A7E9MF_01220_B465) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7E9MF_01220_B465, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1475), '}'), '')))), '[^-]', ''))) AS ?step2476) .
BIND(((?step2476 + ?targetMotifMatchRegionMatchBeginPositionMF_01220_B466) - 1) AS ?thisPositionOn150) .
BIND(?thisPositionOn150 AS ?thisPositionOn151) .
BIND(?this AS ?pfs5t477) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn150))) AS ?pfsb147) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn151))) AS ?pfse148) .
FILTER (REGEX('[NQ]', SUBSTR(?thisSequenceValue, ?thisPositionOn150, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01220a146')) AS ?annotation146) .
BIND(?this AS ?pfs145) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch482 faldo:location ?templateMotifSequenceMatchRegionP0A7E9483 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A7E9485 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A7E9MF_01220_B478 .
?templateMotifSequenceMatchRegionP0A7E9483 faldo:begin ?templateMotifSequenceMatchBeginP0A7E9484 .
?templateMotifSequenceMatchBeginP0A7E9484 faldo:position ?templateMotifSequenceMatchBeginPositionP0A7E9479 ;
faldo:reference isoform:P0A7E9-1 .
?templateMotifSequenceProfileAlignmentOperationP0A7E9485 edam:has_input signature:MF_01220_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch486 faldo:location ?targetMotifMatchRegionMatch487 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01220_B489 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A7E9MF_01220_B480 .
?targetMotifMatchRegionMatch487 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01220_B488 .
?targetMotifMatchRegionMatchBeginMF_01220_B488 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01220_B481 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01220_B489 edam:has_input signature:MF_01220_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A7E9MF_01220_B478, 1, (STRLEN(?templateMotifCigarP0A7E9MF_01220_B478) - STRLEN(REPLACE(?templateMotifCigarP0A7E9MF_01220_B478, CONCAT('^(?:-*[^-]){', STR(((171 - ?templateMotifSequenceMatchBeginPositionP0A7E9479) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1490) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A7E9MF_01220_B480, 1, (STRLEN(?targetMotifMatchCigarP0A7E9MF_01220_B480) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7E9MF_01220_B480, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1490), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A7E9MF_01220_B480, 1, (STRLEN(?targetMotifMatchCigarP0A7E9MF_01220_B480) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7E9MF_01220_B480, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1490), '}'), '')))), '[^-]', ''))) AS ?step2491) .
BIND(((?step2491 + ?targetMotifMatchRegionMatchBeginPositionMF_01220_B481) - 1) AS ?thisPositionOn157) .
BIND(?thisPositionOn157 AS ?thisPositionOn158) .
BIND(?this AS ?pfs5t492) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn157))) AS ?pfsb154) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn158))) AS ?pfse155) .
FILTER (REGEX('[YF]', SUBSTR(?thisSequenceValue, ?thisPositionOn157, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01220a153')) AS ?annotation153) .
BIND(?this AS ?pfs152) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch497 faldo:location ?templateMotifSequenceMatchRegionP0A7E9498 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A7E9500 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A7E9MF_01220_B493 .
?templateMotifSequenceMatchRegionP0A7E9498 faldo:begin ?templateMotifSequenceMatchBeginP0A7E9499 .
?templateMotifSequenceMatchBeginP0A7E9499 faldo:position ?templateMotifSequenceMatchBeginPositionP0A7E9494 ;
faldo:reference isoform:P0A7E9-1 .
?templateMotifSequenceProfileAlignmentOperationP0A7E9500 edam:has_input signature:MF_01220_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch501 faldo:location ?targetMotifMatchRegionMatch502 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01220_B504 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A7E9MF_01220_B495 .
?targetMotifMatchRegionMatch502 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01220_B503 .
?targetMotifMatchRegionMatchBeginMF_01220_B503 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01220_B496 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01220_B504 edam:has_input signature:MF_01220_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A7E9MF_01220_B493, 1, (STRLEN(?templateMotifCigarP0A7E9MF_01220_B493) - STRLEN(REPLACE(?templateMotifCigarP0A7E9MF_01220_B493, CONCAT('^(?:-*[^-]){', STR(((174 - ?templateMotifSequenceMatchBeginPositionP0A7E9494) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1505) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A7E9MF_01220_B495, 1, (STRLEN(?targetMotifMatchCigarP0A7E9MF_01220_B495) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7E9MF_01220_B495, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1505), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A7E9MF_01220_B495, 1, (STRLEN(?targetMotifMatchCigarP0A7E9MF_01220_B495) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7E9MF_01220_B495, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1505), '}'), '')))), '[^-]', ''))) AS ?step2506) .
BIND(((?step2506 + ?targetMotifMatchRegionMatchBeginPositionMF_01220_B496) - 1) AS ?thisPositionOn164) .
BIND(?thisPositionOn164 AS ?thisPositionOn165) .
BIND(?this AS ?pfs5t507) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn164))) AS ?pfsb161) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn165))) AS ?pfse162) .
FILTER (REGEX('[DE]', SUBSTR(?thisSequenceValue, ?thisPositionOn164, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01220a160')) AS ?annotation160) .
BIND(?this AS ?pfs159) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag508) .
}
BIND(IF(BOUND(?tagFT_3), ?caseWithTag508, ?UNBOUND_VARIABLE) AS ?case11) .
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag509) .
}
BIND(IF(BOUND(?tagFT_3), ?caseWithTag509, ?UNBOUND_VARIABLE) AS ?case12) .
}
"xsd:string |
