| http://purl.uniprot.org/unirules/MF_01436#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:519796 up:source unirule:MF_01436 .
_:519797 up:source unirule:MF_01436 .
_:519798 up:source unirule:MF_01436 .
_:519799 up:source unirule:MF_01436 .
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_:519832 up:source unirule:MF_01436 .
_:519833 up:source unirule:MF_01436 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ;
up:classifiedWith GO:0005886 ,
GO:0015891 ,
keyword:1003 ,
keyword:1133 ,
keyword:472 ,
keyword:812 ,
keyword:813 ,
keyword:997 ;
up:recommendedName ?name0 .
?name0 up:fullName 'Enterobactin exporter EntS' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'entS' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Component of an export pathway for enterobactin.' .
?annotation3 a up:Subcellular_Location_Annotation .
?annotation3li4 up:cellularComponent .
?annotation5 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the major facilitator superfamily. EntS (TC 2.A.1.38) family.' .
?pfs6 up:annotation ?annotation7 .
?annotation7 faldo:begin ?pfsb8 ;
faldo:end ?pfse9 ;
rdf:type up:Topological_Domain_Annotation ;
rdfs:comment 'Cytoplasmic' .
?pfsb8 faldo:position ?thisPositionOn10 ;
rdf:type faldo:ExactPosition .
?pfse9 faldo:position ?thisPositionOn11 ;
rdf:type faldo:ExactPosition .
?pfs12 up:annotation ?annotation13 .
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faldo:end ?pfse15 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical' .
?pfsb14 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
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rdf:type faldo:ExactPosition .
?pfs18 up:annotation ?annotation19 .
?annotation19 faldo:begin ?pfsb20 ;
faldo:end ?pfse21 ;
rdf:type up:Topological_Domain_Annotation ;
rdfs:comment 'Periplasmic' .
?pfsb20 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfse21 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfs24 up:annotation ?annotation25 .
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faldo:end ?pfse27 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical' .
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rdf:type faldo:ExactPosition .
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rdf:type faldo:ExactPosition .
?pfs30 up:annotation ?annotation31 .
?annotation31 faldo:begin ?pfsb32 ;
faldo:end ?pfse33 ;
rdf:type up:Topological_Domain_Annotation ;
rdfs:comment 'Cytoplasmic' .
?pfsb32 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfse33 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?pfs36 up:annotation ?annotation37 .
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faldo:end ?pfse39 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical' .
?pfsb38 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?pfse39 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?pfs42 up:annotation ?annotation43 .
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faldo:end ?pfse45 ;
rdf:type up:Topological_Domain_Annotation ;
rdfs:comment 'Periplasmic' .
?pfsb44 faldo:position ?thisPositionOn46 ;
rdf:type faldo:ExactPosition .
?pfse45 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?pfs48 up:annotation ?annotation49 .
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faldo:end ?pfse51 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical' .
?pfsb50 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?pfse51 faldo:position ?thisPositionOn53 ;
rdf:type faldo:ExactPosition .
?pfs54 up:annotation ?annotation55 .
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faldo:end ?pfse57 ;
rdf:type up:Topological_Domain_Annotation ;
rdfs:comment 'Cytoplasmic' .
?pfsb56 faldo:position ?thisPositionOn58 ;
rdf:type faldo:ExactPosition .
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rdf:type faldo:ExactPosition .
?pfs60 up:annotation ?annotation61 .
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faldo:end ?pfse63 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical' .
?pfsb62 faldo:position ?thisPositionOn64 ;
rdf:type faldo:ExactPosition .
?pfse63 faldo:position ?thisPositionOn65 ;
rdf:type faldo:ExactPosition .
?pfs66 up:annotation ?annotation67 .
?annotation67 faldo:begin ?pfsb68 ;
faldo:end ?pfse69 ;
rdf:type up:Topological_Domain_Annotation ;
rdfs:comment 'Periplasmic' .
?pfsb68 faldo:position ?thisPositionOn70 ;
rdf:type faldo:ExactPosition .
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rdf:type faldo:ExactPosition .
?pfs72 up:annotation ?annotation73 .
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faldo:end ?pfse75 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical' .
?pfsb74 faldo:position ?thisPositionOn76 ;
rdf:type faldo:ExactPosition .
?pfse75 faldo:position ?thisPositionOn77 ;
rdf:type faldo:ExactPosition .
?pfs78 up:annotation ?annotation79 .
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faldo:end ?pfse81 ;
rdf:type up:Topological_Domain_Annotation ;
rdfs:comment 'Cytoplasmic' .
?pfsb80 faldo:position ?thisPositionOn82 ;
rdf:type faldo:ExactPosition .
?pfse81 faldo:position ?thisPositionOn83 ;
rdf:type faldo:ExactPosition .
?pfs84 up:annotation ?annotation85 .
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faldo:end ?pfse87 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical' .
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rdf:type faldo:ExactPosition .
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rdf:type faldo:ExactPosition .
?pfs90 up:annotation ?annotation91 .
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faldo:end ?pfse93 ;
rdf:type up:Topological_Domain_Annotation ;
rdfs:comment 'Periplasmic' .
?pfsb92 faldo:position ?thisPositionOn94 ;
rdf:type faldo:ExactPosition .
?pfse93 faldo:position ?thisPositionOn95 ;
rdf:type faldo:ExactPosition .
?pfs96 up:annotation ?annotation97 .
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faldo:end ?pfse99 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical' .
?pfsb98 faldo:position ?thisPositionOn100 ;
rdf:type faldo:ExactPosition .
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rdf:type faldo:ExactPosition .
?pfs102 up:annotation ?annotation103 .
?annotation103 faldo:begin ?pfsb104 ;
faldo:end ?pfse105 ;
rdf:type up:Topological_Domain_Annotation ;
rdfs:comment 'Cytoplasmic' .
?pfsb104 faldo:position ?thisPositionOn106 ;
rdf:type faldo:ExactPosition .
?pfse105 faldo:position ?thisPositionOn107 ;
rdf:type faldo:ExactPosition .
?pfs108 up:annotation ?annotation109 .
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faldo:end ?pfse111 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical' .
?pfsb110 faldo:position ?thisPositionOn112 ;
rdf:type faldo:ExactPosition .
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rdf:type faldo:ExactPosition .
?pfs114 up:annotation ?annotation115 .
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faldo:end ?pfse117 ;
rdf:type up:Topological_Domain_Annotation ;
rdfs:comment 'Periplasmic' .
?pfsb116 faldo:position ?thisPositionOn118 ;
rdf:type faldo:ExactPosition .
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rdf:type faldo:ExactPosition .
?pfs120 up:annotation ?annotation121 .
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faldo:end ?pfse123 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical' .
?pfsb122 faldo:position ?thisPositionOn124 ;
rdf:type faldo:ExactPosition .
?pfse123 faldo:position ?thisPositionOn125 ;
rdf:type faldo:ExactPosition .
?pfs126 up:annotation ?annotation127 .
?annotation127 faldo:begin ?pfsb128 ;
faldo:end ?pfse129 ;
rdf:type up:Topological_Domain_Annotation ;
rdfs:comment 'Cytoplasmic' .
?pfsb128 faldo:position ?thisPositionOn130 ;
rdf:type faldo:ExactPosition .
?pfse129 faldo:position ?thisPositionOn131 ;
rdf:type faldo:ExactPosition .
?pfs132 up:annotation ?annotation133 .
?annotation133 faldo:begin ?pfsb134 ;
faldo:end ?pfse135 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical' .
?pfsb134 faldo:position ?thisPositionOn136 ;
rdf:type faldo:ExactPosition .
?pfse135 faldo:position ?thisPositionOn137 ;
rdf:type faldo:ExactPosition .
?pfs138 up:annotation ?annotation139 .
?annotation139 faldo:begin ?pfsb140 ;
faldo:end ?pfse141 ;
rdf:type up:Topological_Domain_Annotation ;
rdfs:comment 'Periplasmic' .
?pfsb140 faldo:position ?thisPositionOn142 ;
rdf:type faldo:ExactPosition .
?pfse141 faldo:position ?thisPositionOn143 ;
rdf:type faldo:ExactPosition .
?pfs144 up:annotation ?annotation145 .
?annotation145 faldo:begin ?pfsb146 ;
faldo:end ?pfse147 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical' .
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rdf:type faldo:ExactPosition .
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rdf:type faldo:ExactPosition .
?pfs150 up:annotation ?annotation151 .
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faldo:end ?pfse153 ;
rdf:type up:Topological_Domain_Annotation ;
rdfs:comment 'Cytoplasmic' .
?pfsb152 faldo:position ?thisPositionOn154 ;
rdf:type faldo:ExactPosition .
?pfse153 faldo:position ?thisPositionOn155 ;
rdf:type faldo:ExactPosition .
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up:attribution _:519796 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
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up:attribution _:519797 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
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rdf:subject ?this ;
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rdf:subject ?this ;
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rdf:subject ?this ;
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rdf:subject ?this ;
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rdf:subject ?pfs48 ;
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rdf:subject ?pfs84 ;
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rdf:subject ?pfs102 ;
rdf:predicate up:annotation ;
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rdf:predicate up:annotation ;
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rdf:subject ?pfs108 ;
rdf:predicate up:annotation ;
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up:source unirule:MF_01436 ;
rdf:subject ?pfs114 ;
rdf:predicate up:annotation ;
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rdf:subject ?pfs114 ;
rdf:predicate up:annotation ;
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rdf:subject ?pfs120 ;
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rdf:predicate up:annotation ;
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}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01436
#Rule MF_01436 Created by:? on:2006-02-27 Modified by:Edouard de Castro on:2022-09-29
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01436 .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(URI(CONCAT(STR(?this), '#MF_01436a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01436a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01436a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01436a5')) AS ?annotation5) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch160 faldo:location ?templateMotifSequenceMatchRegionP24077161 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP24077163 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP24077MF_01436156 .
?templateMotifSequenceMatchRegionP24077161 faldo:begin ?templateMotifSequenceMatchBeginP24077162 .
?templateMotifSequenceMatchBeginP24077162 faldo:position ?templateMotifSequenceMatchBeginPositionP24077157 ;
faldo:reference isoform:P24077-1 .
?templateMotifSequenceProfileAlignmentOperationP24077163 edam:has_input signature:MF_01436 ;
rdf:type edam:operation_0300 .
?targetMotifMatch164 faldo:location ?targetMotifMatchRegionMatch165 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01436167 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP24077MF_01436158 .
?targetMotifMatchRegionMatch165 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01436166 .
?targetMotifMatchRegionMatchBeginMF_01436166 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01436159 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01436167 edam:has_input signature:MF_01436 ;
rdf:type edam:operation_0300 .
BIND(1 AS ?thisPositionOn10) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24077MF_01436156, 1, (STRLEN(?templateMotifCigarP24077MF_01436156) - STRLEN(REPLACE(?templateMotifCigarP24077MF_01436156, CONCAT('^(?:-*[^-]){', STR(((21 - ?templateMotifSequenceMatchBeginPositionP24077157) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1168) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24077MF_01436158, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436158) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436158, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1168), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24077MF_01436158, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436158) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436158, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1168), '}'), '')))), '[^-]', ''))) AS ?step2169) .
BIND(((?step2169 + ?targetMotifMatchRegionMatchBeginPositionMF_01436159) - 1) AS ?thisPositionOn11) .
BIND(?this AS ?pfs1t170) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn10))) AS ?pfsb8) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn11))) AS ?pfse9) .
FILTER ((BOUND(?thisPositionOn10) && BOUND(?thisPositionOn11))) .
BIND(URI(CONCAT(STR(?this), '#MF_01436a7')) AS ?annotation7) .
BIND(?this AS ?pfs6) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch175 faldo:location ?templateMotifSequenceMatchRegionP24077176 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP24077178 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP24077MF_01436171 .
?templateMotifSequenceMatchRegionP24077176 faldo:begin ?templateMotifSequenceMatchBeginP24077177 .
?templateMotifSequenceMatchBeginP24077177 faldo:position ?templateMotifSequenceMatchBeginPositionP24077172 ;
faldo:reference isoform:P24077-1 .
?templateMotifSequenceProfileAlignmentOperationP24077178 edam:has_input signature:MF_01436 ;
rdf:type edam:operation_0300 .
?targetMotifMatch179 faldo:location ?targetMotifMatchRegionMatch180 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01436182 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP24077MF_01436173 .
?targetMotifMatchRegionMatch180 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01436181 .
?targetMotifMatchRegionMatchBeginMF_01436181 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01436174 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01436182 edam:has_input signature:MF_01436 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24077MF_01436171, 1, (STRLEN(?templateMotifCigarP24077MF_01436171) - STRLEN(REPLACE(?templateMotifCigarP24077MF_01436171, CONCAT('^(?:-*[^-]){', STR(((22 - ?templateMotifSequenceMatchBeginPositionP24077172) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1183) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24077MF_01436173, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436173) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436173, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1183), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24077MF_01436173, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436173) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436173, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1183), '}'), '')))), '[^-]', ''))) AS ?step2184) .
BIND(((?step2184 + ?targetMotifMatchRegionMatchBeginPositionMF_01436174) - 1) AS ?thisPositionOn16) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24077MF_01436171, 1, (STRLEN(?templateMotifCigarP24077MF_01436171) - STRLEN(REPLACE(?templateMotifCigarP24077MF_01436171, CONCAT('^(?:-*[^-]){', STR(((42 - ?templateMotifSequenceMatchBeginPositionP24077172) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1185) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24077MF_01436173, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436173) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436173, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1185), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24077MF_01436173, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436173) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436173, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1185), '}'), '')))), '[^-]', ''))) AS ?step2186) .
BIND(((?step2186 + ?targetMotifMatchRegionMatchBeginPositionMF_01436174) - 1) AS ?thisPositionOn17) .
BIND(?this AS ?pfs1t187) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb14) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse15) .
FILTER ((BOUND(?thisPositionOn16) && BOUND(?thisPositionOn17))) .
BIND(URI(CONCAT(STR(?this), '#MF_01436a13')) AS ?annotation13) .
BIND(?this AS ?pfs12) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch192 faldo:location ?templateMotifSequenceMatchRegionP24077193 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP24077195 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP24077MF_01436188 .
?templateMotifSequenceMatchRegionP24077193 faldo:begin ?templateMotifSequenceMatchBeginP24077194 .
?templateMotifSequenceMatchBeginP24077194 faldo:position ?templateMotifSequenceMatchBeginPositionP24077189 ;
faldo:reference isoform:P24077-1 .
?templateMotifSequenceProfileAlignmentOperationP24077195 edam:has_input signature:MF_01436 ;
rdf:type edam:operation_0300 .
?targetMotifMatch196 faldo:location ?targetMotifMatchRegionMatch197 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01436199 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP24077MF_01436190 .
?targetMotifMatchRegionMatch197 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01436198 .
?targetMotifMatchRegionMatchBeginMF_01436198 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01436191 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01436199 edam:has_input signature:MF_01436 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24077MF_01436188, 1, (STRLEN(?templateMotifCigarP24077MF_01436188) - STRLEN(REPLACE(?templateMotifCigarP24077MF_01436188, CONCAT('^(?:-*[^-]){', STR(((43 - ?templateMotifSequenceMatchBeginPositionP24077189) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1200) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24077MF_01436190, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436190) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436190, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1200), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24077MF_01436190, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436190) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436190, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1200), '}'), '')))), '[^-]', ''))) AS ?step2201) .
BIND(((?step2201 + ?targetMotifMatchRegionMatchBeginPositionMF_01436191) - 1) AS ?thisPositionOn22) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24077MF_01436188, 1, (STRLEN(?templateMotifCigarP24077MF_01436188) - STRLEN(REPLACE(?templateMotifCigarP24077MF_01436188, CONCAT('^(?:-*[^-]){', STR(((55 - ?templateMotifSequenceMatchBeginPositionP24077189) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1202) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24077MF_01436190, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436190) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436190, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1202), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24077MF_01436190, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436190) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436190, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1202), '}'), '')))), '[^-]', ''))) AS ?step2203) .
BIND(((?step2203 + ?targetMotifMatchRegionMatchBeginPositionMF_01436191) - 1) AS ?thisPositionOn23) .
BIND(?this AS ?pfs1t204) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb20) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse21) .
FILTER ((BOUND(?thisPositionOn22) && BOUND(?thisPositionOn23))) .
BIND(URI(CONCAT(STR(?this), '#MF_01436a19')) AS ?annotation19) .
BIND(?this AS ?pfs18) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch209 faldo:location ?templateMotifSequenceMatchRegionP24077210 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP24077212 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP24077MF_01436205 .
?templateMotifSequenceMatchRegionP24077210 faldo:begin ?templateMotifSequenceMatchBeginP24077211 .
?templateMotifSequenceMatchBeginP24077211 faldo:position ?templateMotifSequenceMatchBeginPositionP24077206 ;
faldo:reference isoform:P24077-1 .
?templateMotifSequenceProfileAlignmentOperationP24077212 edam:has_input signature:MF_01436 ;
rdf:type edam:operation_0300 .
?targetMotifMatch213 faldo:location ?targetMotifMatchRegionMatch214 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01436216 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP24077MF_01436207 .
?targetMotifMatchRegionMatch214 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01436215 .
?targetMotifMatchRegionMatchBeginMF_01436215 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01436208 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01436216 edam:has_input signature:MF_01436 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24077MF_01436205, 1, (STRLEN(?templateMotifCigarP24077MF_01436205) - STRLEN(REPLACE(?templateMotifCigarP24077MF_01436205, CONCAT('^(?:-*[^-]){', STR(((56 - ?templateMotifSequenceMatchBeginPositionP24077206) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1217) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24077MF_01436207, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436207) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436207, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1217), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24077MF_01436207, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436207) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436207, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1217), '}'), '')))), '[^-]', ''))) AS ?step2218) .
BIND(((?step2218 + ?targetMotifMatchRegionMatchBeginPositionMF_01436208) - 1) AS ?thisPositionOn28) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24077MF_01436205, 1, (STRLEN(?templateMotifCigarP24077MF_01436205) - STRLEN(REPLACE(?templateMotifCigarP24077MF_01436205, CONCAT('^(?:-*[^-]){', STR(((76 - ?templateMotifSequenceMatchBeginPositionP24077206) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1219) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24077MF_01436207, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436207) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436207, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1219), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24077MF_01436207, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436207) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436207, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1219), '}'), '')))), '[^-]', ''))) AS ?step2220) .
BIND(((?step2220 + ?targetMotifMatchRegionMatchBeginPositionMF_01436208) - 1) AS ?thisPositionOn29) .
BIND(?this AS ?pfs1t221) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb26) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse27) .
FILTER ((BOUND(?thisPositionOn28) && BOUND(?thisPositionOn29))) .
BIND(URI(CONCAT(STR(?this), '#MF_01436a25')) AS ?annotation25) .
BIND(?this AS ?pfs24) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch226 faldo:location ?templateMotifSequenceMatchRegionP24077227 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP24077229 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP24077MF_01436222 .
?templateMotifSequenceMatchRegionP24077227 faldo:begin ?templateMotifSequenceMatchBeginP24077228 .
?templateMotifSequenceMatchBeginP24077228 faldo:position ?templateMotifSequenceMatchBeginPositionP24077223 ;
faldo:reference isoform:P24077-1 .
?templateMotifSequenceProfileAlignmentOperationP24077229 edam:has_input signature:MF_01436 ;
rdf:type edam:operation_0300 .
?targetMotifMatch230 faldo:location ?targetMotifMatchRegionMatch231 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01436233 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP24077MF_01436224 .
?targetMotifMatchRegionMatch231 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01436232 .
?targetMotifMatchRegionMatchBeginMF_01436232 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01436225 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01436233 edam:has_input signature:MF_01436 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24077MF_01436222, 1, (STRLEN(?templateMotifCigarP24077MF_01436222) - STRLEN(REPLACE(?templateMotifCigarP24077MF_01436222, CONCAT('^(?:-*[^-]){', STR(((77 - ?templateMotifSequenceMatchBeginPositionP24077223) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1234) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24077MF_01436224, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436224) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436224, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1234), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24077MF_01436224, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436224) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436224, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1234), '}'), '')))), '[^-]', ''))) AS ?step2235) .
BIND(((?step2235 + ?targetMotifMatchRegionMatchBeginPositionMF_01436225) - 1) AS ?thisPositionOn34) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24077MF_01436222, 1, (STRLEN(?templateMotifCigarP24077MF_01436222) - STRLEN(REPLACE(?templateMotifCigarP24077MF_01436222, CONCAT('^(?:-*[^-]){', STR(((83 - ?templateMotifSequenceMatchBeginPositionP24077223) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1236) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24077MF_01436224, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436224) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436224, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1236), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24077MF_01436224, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436224) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436224, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1236), '}'), '')))), '[^-]', ''))) AS ?step2237) .
BIND(((?step2237 + ?targetMotifMatchRegionMatchBeginPositionMF_01436225) - 1) AS ?thisPositionOn35) .
BIND(?this AS ?pfs1t238) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb32) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse33) .
FILTER ((BOUND(?thisPositionOn34) && BOUND(?thisPositionOn35))) .
BIND(URI(CONCAT(STR(?this), '#MF_01436a31')) AS ?annotation31) .
BIND(?this AS ?pfs30) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch243 faldo:location ?templateMotifSequenceMatchRegionP24077244 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP24077246 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP24077MF_01436239 .
?templateMotifSequenceMatchRegionP24077244 faldo:begin ?templateMotifSequenceMatchBeginP24077245 .
?templateMotifSequenceMatchBeginP24077245 faldo:position ?templateMotifSequenceMatchBeginPositionP24077240 ;
faldo:reference isoform:P24077-1 .
?templateMotifSequenceProfileAlignmentOperationP24077246 edam:has_input signature:MF_01436 ;
rdf:type edam:operation_0300 .
?targetMotifMatch247 faldo:location ?targetMotifMatchRegionMatch248 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01436250 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP24077MF_01436241 .
?targetMotifMatchRegionMatch248 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01436249 .
?targetMotifMatchRegionMatchBeginMF_01436249 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01436242 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01436250 edam:has_input signature:MF_01436 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24077MF_01436239, 1, (STRLEN(?templateMotifCigarP24077MF_01436239) - STRLEN(REPLACE(?templateMotifCigarP24077MF_01436239, CONCAT('^(?:-*[^-]){', STR(((84 - ?templateMotifSequenceMatchBeginPositionP24077240) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1251) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24077MF_01436241, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436241) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436241, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1251), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24077MF_01436241, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436241) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436241, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1251), '}'), '')))), '[^-]', ''))) AS ?step2252) .
BIND(((?step2252 + ?targetMotifMatchRegionMatchBeginPositionMF_01436242) - 1) AS ?thisPositionOn40) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24077MF_01436239, 1, (STRLEN(?templateMotifCigarP24077MF_01436239) - STRLEN(REPLACE(?templateMotifCigarP24077MF_01436239, CONCAT('^(?:-*[^-]){', STR(((104 - ?templateMotifSequenceMatchBeginPositionP24077240) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1253) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24077MF_01436241, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436241) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436241, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1253), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24077MF_01436241, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436241) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436241, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1253), '}'), '')))), '[^-]', ''))) AS ?step2254) .
BIND(((?step2254 + ?targetMotifMatchRegionMatchBeginPositionMF_01436242) - 1) AS ?thisPositionOn41) .
BIND(?this AS ?pfs1t255) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfsb38) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfse39) .
FILTER ((BOUND(?thisPositionOn40) && BOUND(?thisPositionOn41))) .
BIND(URI(CONCAT(STR(?this), '#MF_01436a37')) AS ?annotation37) .
BIND(?this AS ?pfs36) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch260 faldo:location ?templateMotifSequenceMatchRegionP24077261 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP24077263 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP24077MF_01436256 .
?templateMotifSequenceMatchRegionP24077261 faldo:begin ?templateMotifSequenceMatchBeginP24077262 .
?templateMotifSequenceMatchBeginP24077262 faldo:position ?templateMotifSequenceMatchBeginPositionP24077257 ;
faldo:reference isoform:P24077-1 .
?templateMotifSequenceProfileAlignmentOperationP24077263 edam:has_input signature:MF_01436 ;
rdf:type edam:operation_0300 .
?targetMotifMatch264 faldo:location ?targetMotifMatchRegionMatch265 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01436267 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP24077MF_01436258 .
?targetMotifMatchRegionMatch265 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01436266 .
?targetMotifMatchRegionMatchBeginMF_01436266 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01436259 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01436267 edam:has_input signature:MF_01436 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24077MF_01436256, 1, (STRLEN(?templateMotifCigarP24077MF_01436256) - STRLEN(REPLACE(?templateMotifCigarP24077MF_01436256, CONCAT('^(?:-*[^-]){', STR(((105 - ?templateMotifSequenceMatchBeginPositionP24077257) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1268) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24077MF_01436258, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436258) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436258, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1268), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24077MF_01436258, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436258) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436258, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1268), '}'), '')))), '[^-]', ''))) AS ?step2269) .
BIND(((?step2269 + ?targetMotifMatchRegionMatchBeginPositionMF_01436259) - 1) AS ?thisPositionOn46) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24077MF_01436256, 1, (STRLEN(?templateMotifCigarP24077MF_01436256) - STRLEN(REPLACE(?templateMotifCigarP24077MF_01436256, CONCAT('^(?:-*[^-]){', STR(((109 - ?templateMotifSequenceMatchBeginPositionP24077257) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1270) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24077MF_01436258, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436258) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436258, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1270), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24077MF_01436258, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436258) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436258, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1270), '}'), '')))), '[^-]', ''))) AS ?step2271) .
BIND(((?step2271 + ?targetMotifMatchRegionMatchBeginPositionMF_01436259) - 1) AS ?thisPositionOn47) .
BIND(?this AS ?pfs1t272) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfsb44) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfse45) .
FILTER ((BOUND(?thisPositionOn46) && BOUND(?thisPositionOn47))) .
BIND(URI(CONCAT(STR(?this), '#MF_01436a43')) AS ?annotation43) .
BIND(?this AS ?pfs42) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch277 faldo:location ?templateMotifSequenceMatchRegionP24077278 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP24077280 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP24077MF_01436273 .
?templateMotifSequenceMatchRegionP24077278 faldo:begin ?templateMotifSequenceMatchBeginP24077279 .
?templateMotifSequenceMatchBeginP24077279 faldo:position ?templateMotifSequenceMatchBeginPositionP24077274 ;
faldo:reference isoform:P24077-1 .
?templateMotifSequenceProfileAlignmentOperationP24077280 edam:has_input signature:MF_01436 ;
rdf:type edam:operation_0300 .
?targetMotifMatch281 faldo:location ?targetMotifMatchRegionMatch282 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01436284 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP24077MF_01436275 .
?targetMotifMatchRegionMatch282 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01436283 .
?targetMotifMatchRegionMatchBeginMF_01436283 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01436276 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01436284 edam:has_input signature:MF_01436 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24077MF_01436273, 1, (STRLEN(?templateMotifCigarP24077MF_01436273) - STRLEN(REPLACE(?templateMotifCigarP24077MF_01436273, CONCAT('^(?:-*[^-]){', STR(((110 - ?templateMotifSequenceMatchBeginPositionP24077274) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1285) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24077MF_01436275, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436275) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436275, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1285), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24077MF_01436275, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436275) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436275, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1285), '}'), '')))), '[^-]', ''))) AS ?step2286) .
BIND(((?step2286 + ?targetMotifMatchRegionMatchBeginPositionMF_01436276) - 1) AS ?thisPositionOn52) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24077MF_01436273, 1, (STRLEN(?templateMotifCigarP24077MF_01436273) - STRLEN(REPLACE(?templateMotifCigarP24077MF_01436273, CONCAT('^(?:-*[^-]){', STR(((130 - ?templateMotifSequenceMatchBeginPositionP24077274) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1287) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24077MF_01436275, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436275) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436275, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1287), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24077MF_01436275, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436275) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436275, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1287), '}'), '')))), '[^-]', ''))) AS ?step2288) .
BIND(((?step2288 + ?targetMotifMatchRegionMatchBeginPositionMF_01436276) - 1) AS ?thisPositionOn53) .
BIND(?this AS ?pfs1t289) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfsb50) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfse51) .
FILTER ((BOUND(?thisPositionOn52) && BOUND(?thisPositionOn53))) .
BIND(URI(CONCAT(STR(?this), '#MF_01436a49')) AS ?annotation49) .
BIND(?this AS ?pfs48) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch294 faldo:location ?templateMotifSequenceMatchRegionP24077295 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP24077297 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP24077MF_01436290 .
?templateMotifSequenceMatchRegionP24077295 faldo:begin ?templateMotifSequenceMatchBeginP24077296 .
?templateMotifSequenceMatchBeginP24077296 faldo:position ?templateMotifSequenceMatchBeginPositionP24077291 ;
faldo:reference isoform:P24077-1 .
?templateMotifSequenceProfileAlignmentOperationP24077297 edam:has_input signature:MF_01436 ;
rdf:type edam:operation_0300 .
?targetMotifMatch298 faldo:location ?targetMotifMatchRegionMatch299 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01436301 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP24077MF_01436292 .
?targetMotifMatchRegionMatch299 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01436300 .
?targetMotifMatchRegionMatchBeginMF_01436300 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01436293 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01436301 edam:has_input signature:MF_01436 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24077MF_01436290, 1, (STRLEN(?templateMotifCigarP24077MF_01436290) - STRLEN(REPLACE(?templateMotifCigarP24077MF_01436290, CONCAT('^(?:-*[^-]){', STR(((131 - ?templateMotifSequenceMatchBeginPositionP24077291) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1302) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24077MF_01436292, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436292) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436292, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1302), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24077MF_01436292, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436292) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436292, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1302), '}'), '')))), '[^-]', ''))) AS ?step2303) .
BIND(((?step2303 + ?targetMotifMatchRegionMatchBeginPositionMF_01436293) - 1) AS ?thisPositionOn58) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24077MF_01436290, 1, (STRLEN(?templateMotifCigarP24077MF_01436290) - STRLEN(REPLACE(?templateMotifCigarP24077MF_01436290, CONCAT('^(?:-*[^-]){', STR(((156 - ?templateMotifSequenceMatchBeginPositionP24077291) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1304) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24077MF_01436292, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436292) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436292, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1304), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24077MF_01436292, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436292) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436292, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1304), '}'), '')))), '[^-]', ''))) AS ?step2305) .
BIND(((?step2305 + ?targetMotifMatchRegionMatchBeginPositionMF_01436293) - 1) AS ?thisPositionOn59) .
BIND(?this AS ?pfs1t306) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfsb56) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfse57) .
FILTER ((BOUND(?thisPositionOn58) && BOUND(?thisPositionOn59))) .
BIND(URI(CONCAT(STR(?this), '#MF_01436a55')) AS ?annotation55) .
BIND(?this AS ?pfs54) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch311 faldo:location ?templateMotifSequenceMatchRegionP24077312 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP24077314 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP24077MF_01436307 .
?templateMotifSequenceMatchRegionP24077312 faldo:begin ?templateMotifSequenceMatchBeginP24077313 .
?templateMotifSequenceMatchBeginP24077313 faldo:position ?templateMotifSequenceMatchBeginPositionP24077308 ;
faldo:reference isoform:P24077-1 .
?templateMotifSequenceProfileAlignmentOperationP24077314 edam:has_input signature:MF_01436 ;
rdf:type edam:operation_0300 .
?targetMotifMatch315 faldo:location ?targetMotifMatchRegionMatch316 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01436318 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP24077MF_01436309 .
?targetMotifMatchRegionMatch316 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01436317 .
?targetMotifMatchRegionMatchBeginMF_01436317 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01436310 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01436318 edam:has_input signature:MF_01436 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24077MF_01436307, 1, (STRLEN(?templateMotifCigarP24077MF_01436307) - STRLEN(REPLACE(?templateMotifCigarP24077MF_01436307, CONCAT('^(?:-*[^-]){', STR(((157 - ?templateMotifSequenceMatchBeginPositionP24077308) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1319) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24077MF_01436309, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436309) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436309, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1319), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24077MF_01436309, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436309) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436309, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1319), '}'), '')))), '[^-]', ''))) AS ?step2320) .
BIND(((?step2320 + ?targetMotifMatchRegionMatchBeginPositionMF_01436310) - 1) AS ?thisPositionOn64) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24077MF_01436307, 1, (STRLEN(?templateMotifCigarP24077MF_01436307) - STRLEN(REPLACE(?templateMotifCigarP24077MF_01436307, CONCAT('^(?:-*[^-]){', STR(((177 - ?templateMotifSequenceMatchBeginPositionP24077308) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1321) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24077MF_01436309, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436309) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436309, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1321), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24077MF_01436309, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436309) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436309, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1321), '}'), '')))), '[^-]', ''))) AS ?step2322) .
BIND(((?step2322 + ?targetMotifMatchRegionMatchBeginPositionMF_01436310) - 1) AS ?thisPositionOn65) .
BIND(?this AS ?pfs1t323) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfsb62) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn65))) AS ?pfse63) .
FILTER ((BOUND(?thisPositionOn64) && BOUND(?thisPositionOn65))) .
BIND(URI(CONCAT(STR(?this), '#MF_01436a61')) AS ?annotation61) .
BIND(?this AS ?pfs60) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch328 faldo:location ?templateMotifSequenceMatchRegionP24077329 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP24077331 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP24077MF_01436324 .
?templateMotifSequenceMatchRegionP24077329 faldo:begin ?templateMotifSequenceMatchBeginP24077330 .
?templateMotifSequenceMatchBeginP24077330 faldo:position ?templateMotifSequenceMatchBeginPositionP24077325 ;
faldo:reference isoform:P24077-1 .
?templateMotifSequenceProfileAlignmentOperationP24077331 edam:has_input signature:MF_01436 ;
rdf:type edam:operation_0300 .
?targetMotifMatch332 faldo:location ?targetMotifMatchRegionMatch333 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01436335 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP24077MF_01436326 .
?targetMotifMatchRegionMatch333 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01436334 .
?targetMotifMatchRegionMatchBeginMF_01436334 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01436327 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01436335 edam:has_input signature:MF_01436 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24077MF_01436324, 1, (STRLEN(?templateMotifCigarP24077MF_01436324) - STRLEN(REPLACE(?templateMotifCigarP24077MF_01436324, CONCAT('^(?:-*[^-]){', STR(((178 - ?templateMotifSequenceMatchBeginPositionP24077325) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1336) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24077MF_01436326, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436326) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436326, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1336), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24077MF_01436326, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436326) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436326, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1336), '}'), '')))), '[^-]', ''))) AS ?step2337) .
BIND(((?step2337 + ?targetMotifMatchRegionMatchBeginPositionMF_01436327) - 1) AS ?thisPositionOn70) .
BIND(?thisPositionOn70 AS ?thisPositionOn71) .
BIND(?this AS ?pfs1t338) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn70))) AS ?pfsb68) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn71))) AS ?pfse69) .
FILTER (BOUND(?thisPositionOn70)) .
BIND(URI(CONCAT(STR(?this), '#MF_01436a67')) AS ?annotation67) .
BIND(?this AS ?pfs66) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch343 faldo:location ?templateMotifSequenceMatchRegionP24077344 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP24077346 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP24077MF_01436339 .
?templateMotifSequenceMatchRegionP24077344 faldo:begin ?templateMotifSequenceMatchBeginP24077345 .
?templateMotifSequenceMatchBeginP24077345 faldo:position ?templateMotifSequenceMatchBeginPositionP24077340 ;
faldo:reference isoform:P24077-1 .
?templateMotifSequenceProfileAlignmentOperationP24077346 edam:has_input signature:MF_01436 ;
rdf:type edam:operation_0300 .
?targetMotifMatch347 faldo:location ?targetMotifMatchRegionMatch348 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01436350 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP24077MF_01436341 .
?targetMotifMatchRegionMatch348 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01436349 .
?targetMotifMatchRegionMatchBeginMF_01436349 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01436342 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01436350 edam:has_input signature:MF_01436 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24077MF_01436339, 1, (STRLEN(?templateMotifCigarP24077MF_01436339) - STRLEN(REPLACE(?templateMotifCigarP24077MF_01436339, CONCAT('^(?:-*[^-]){', STR(((179 - ?templateMotifSequenceMatchBeginPositionP24077340) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1351) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24077MF_01436341, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436341) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436341, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1351), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24077MF_01436341, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436341) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436341, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1351), '}'), '')))), '[^-]', ''))) AS ?step2352) .
BIND(((?step2352 + ?targetMotifMatchRegionMatchBeginPositionMF_01436342) - 1) AS ?thisPositionOn76) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24077MF_01436339, 1, (STRLEN(?templateMotifCigarP24077MF_01436339) - STRLEN(REPLACE(?templateMotifCigarP24077MF_01436339, CONCAT('^(?:-*[^-]){', STR(((199 - ?templateMotifSequenceMatchBeginPositionP24077340) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1353) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24077MF_01436341, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436341) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436341, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1353), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24077MF_01436341, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436341) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436341, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1353), '}'), '')))), '[^-]', ''))) AS ?step2354) .
BIND(((?step2354 + ?targetMotifMatchRegionMatchBeginPositionMF_01436342) - 1) AS ?thisPositionOn77) .
BIND(?this AS ?pfs1t355) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn76))) AS ?pfsb74) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn77))) AS ?pfse75) .
FILTER ((BOUND(?thisPositionOn76) && BOUND(?thisPositionOn77))) .
BIND(URI(CONCAT(STR(?this), '#MF_01436a73')) AS ?annotation73) .
BIND(?this AS ?pfs72) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch360 faldo:location ?templateMotifSequenceMatchRegionP24077361 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP24077363 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP24077MF_01436356 .
?templateMotifSequenceMatchRegionP24077361 faldo:begin ?templateMotifSequenceMatchBeginP24077362 .
?templateMotifSequenceMatchBeginP24077362 faldo:position ?templateMotifSequenceMatchBeginPositionP24077357 ;
faldo:reference isoform:P24077-1 .
?templateMotifSequenceProfileAlignmentOperationP24077363 edam:has_input signature:MF_01436 ;
rdf:type edam:operation_0300 .
?targetMotifMatch364 faldo:location ?targetMotifMatchRegionMatch365 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01436367 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP24077MF_01436358 .
?targetMotifMatchRegionMatch365 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01436366 .
?targetMotifMatchRegionMatchBeginMF_01436366 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01436359 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01436367 edam:has_input signature:MF_01436 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24077MF_01436356, 1, (STRLEN(?templateMotifCigarP24077MF_01436356) - STRLEN(REPLACE(?templateMotifCigarP24077MF_01436356, CONCAT('^(?:-*[^-]){', STR(((200 - ?templateMotifSequenceMatchBeginPositionP24077357) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1368) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24077MF_01436358, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436358) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436358, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1368), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24077MF_01436358, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436358) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436358, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1368), '}'), '')))), '[^-]', ''))) AS ?step2369) .
BIND(((?step2369 + ?targetMotifMatchRegionMatchBeginPositionMF_01436359) - 1) AS ?thisPositionOn82) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24077MF_01436356, 1, (STRLEN(?templateMotifCigarP24077MF_01436356) - STRLEN(REPLACE(?templateMotifCigarP24077MF_01436356, CONCAT('^(?:-*[^-]){', STR(((218 - ?templateMotifSequenceMatchBeginPositionP24077357) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1370) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24077MF_01436358, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436358) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436358, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1370), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24077MF_01436358, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436358) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436358, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1370), '}'), '')))), '[^-]', ''))) AS ?step2371) .
BIND(((?step2371 + ?targetMotifMatchRegionMatchBeginPositionMF_01436359) - 1) AS ?thisPositionOn83) .
BIND(?this AS ?pfs1t372) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn82))) AS ?pfsb80) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn83))) AS ?pfse81) .
FILTER ((BOUND(?thisPositionOn82) && BOUND(?thisPositionOn83))) .
BIND(URI(CONCAT(STR(?this), '#MF_01436a79')) AS ?annotation79) .
BIND(?this AS ?pfs78) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch377 faldo:location ?templateMotifSequenceMatchRegionP24077378 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP24077380 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP24077MF_01436373 .
?templateMotifSequenceMatchRegionP24077378 faldo:begin ?templateMotifSequenceMatchBeginP24077379 .
?templateMotifSequenceMatchBeginP24077379 faldo:position ?templateMotifSequenceMatchBeginPositionP24077374 ;
faldo:reference isoform:P24077-1 .
?templateMotifSequenceProfileAlignmentOperationP24077380 edam:has_input signature:MF_01436 ;
rdf:type edam:operation_0300 .
?targetMotifMatch381 faldo:location ?targetMotifMatchRegionMatch382 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01436384 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP24077MF_01436375 .
?targetMotifMatchRegionMatch382 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01436383 .
?targetMotifMatchRegionMatchBeginMF_01436383 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01436376 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01436384 edam:has_input signature:MF_01436 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24077MF_01436373, 1, (STRLEN(?templateMotifCigarP24077MF_01436373) - STRLEN(REPLACE(?templateMotifCigarP24077MF_01436373, CONCAT('^(?:-*[^-]){', STR(((219 - ?templateMotifSequenceMatchBeginPositionP24077374) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1385) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24077MF_01436375, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436375) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436375, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1385), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24077MF_01436375, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436375) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436375, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1385), '}'), '')))), '[^-]', ''))) AS ?step2386) .
BIND(((?step2386 + ?targetMotifMatchRegionMatchBeginPositionMF_01436376) - 1) AS ?thisPositionOn88) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24077MF_01436373, 1, (STRLEN(?templateMotifCigarP24077MF_01436373) - STRLEN(REPLACE(?templateMotifCigarP24077MF_01436373, CONCAT('^(?:-*[^-]){', STR(((239 - ?templateMotifSequenceMatchBeginPositionP24077374) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1387) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24077MF_01436375, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436375) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436375, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1387), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24077MF_01436375, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436375) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436375, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1387), '}'), '')))), '[^-]', ''))) AS ?step2388) .
BIND(((?step2388 + ?targetMotifMatchRegionMatchBeginPositionMF_01436376) - 1) AS ?thisPositionOn89) .
BIND(?this AS ?pfs1t389) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn88))) AS ?pfsb86) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn89))) AS ?pfse87) .
FILTER ((BOUND(?thisPositionOn88) && BOUND(?thisPositionOn89))) .
BIND(URI(CONCAT(STR(?this), '#MF_01436a85')) AS ?annotation85) .
BIND(?this AS ?pfs84) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch394 faldo:location ?templateMotifSequenceMatchRegionP24077395 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP24077397 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP24077MF_01436390 .
?templateMotifSequenceMatchRegionP24077395 faldo:begin ?templateMotifSequenceMatchBeginP24077396 .
?templateMotifSequenceMatchBeginP24077396 faldo:position ?templateMotifSequenceMatchBeginPositionP24077391 ;
faldo:reference isoform:P24077-1 .
?templateMotifSequenceProfileAlignmentOperationP24077397 edam:has_input signature:MF_01436 ;
rdf:type edam:operation_0300 .
?targetMotifMatch398 faldo:location ?targetMotifMatchRegionMatch399 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01436401 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP24077MF_01436392 .
?targetMotifMatchRegionMatch399 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01436400 .
?targetMotifMatchRegionMatchBeginMF_01436400 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01436393 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01436401 edam:has_input signature:MF_01436 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24077MF_01436390, 1, (STRLEN(?templateMotifCigarP24077MF_01436390) - STRLEN(REPLACE(?templateMotifCigarP24077MF_01436390, CONCAT('^(?:-*[^-]){', STR(((240 - ?templateMotifSequenceMatchBeginPositionP24077391) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1402) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24077MF_01436392, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436392) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436392, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1402), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24077MF_01436392, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436392) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436392, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1402), '}'), '')))), '[^-]', ''))) AS ?step2403) .
BIND(((?step2403 + ?targetMotifMatchRegionMatchBeginPositionMF_01436393) - 1) AS ?thisPositionOn94) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24077MF_01436390, 1, (STRLEN(?templateMotifCigarP24077MF_01436390) - STRLEN(REPLACE(?templateMotifCigarP24077MF_01436390, CONCAT('^(?:-*[^-]){', STR(((256 - ?templateMotifSequenceMatchBeginPositionP24077391) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1404) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24077MF_01436392, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436392) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436392, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1404), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24077MF_01436392, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436392) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436392, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1404), '}'), '')))), '[^-]', ''))) AS ?step2405) .
BIND(((?step2405 + ?targetMotifMatchRegionMatchBeginPositionMF_01436393) - 1) AS ?thisPositionOn95) .
BIND(?this AS ?pfs1t406) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn94))) AS ?pfsb92) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn95))) AS ?pfse93) .
FILTER ((BOUND(?thisPositionOn94) && BOUND(?thisPositionOn95))) .
BIND(URI(CONCAT(STR(?this), '#MF_01436a91')) AS ?annotation91) .
BIND(?this AS ?pfs90) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch411 faldo:location ?templateMotifSequenceMatchRegionP24077412 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP24077414 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP24077MF_01436407 .
?templateMotifSequenceMatchRegionP24077412 faldo:begin ?templateMotifSequenceMatchBeginP24077413 .
?templateMotifSequenceMatchBeginP24077413 faldo:position ?templateMotifSequenceMatchBeginPositionP24077408 ;
faldo:reference isoform:P24077-1 .
?templateMotifSequenceProfileAlignmentOperationP24077414 edam:has_input signature:MF_01436 ;
rdf:type edam:operation_0300 .
?targetMotifMatch415 faldo:location ?targetMotifMatchRegionMatch416 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01436418 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP24077MF_01436409 .
?targetMotifMatchRegionMatch416 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01436417 .
?targetMotifMatchRegionMatchBeginMF_01436417 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01436410 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01436418 edam:has_input signature:MF_01436 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24077MF_01436407, 1, (STRLEN(?templateMotifCigarP24077MF_01436407) - STRLEN(REPLACE(?templateMotifCigarP24077MF_01436407, CONCAT('^(?:-*[^-]){', STR(((257 - ?templateMotifSequenceMatchBeginPositionP24077408) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1419) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24077MF_01436409, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436409) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436409, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1419), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24077MF_01436409, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436409) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436409, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1419), '}'), '')))), '[^-]', ''))) AS ?step2420) .
BIND(((?step2420 + ?targetMotifMatchRegionMatchBeginPositionMF_01436410) - 1) AS ?thisPositionOn100) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24077MF_01436407, 1, (STRLEN(?templateMotifCigarP24077MF_01436407) - STRLEN(REPLACE(?templateMotifCigarP24077MF_01436407, CONCAT('^(?:-*[^-]){', STR(((277 - ?templateMotifSequenceMatchBeginPositionP24077408) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1421) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24077MF_01436409, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436409) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436409, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1421), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24077MF_01436409, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436409) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436409, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1421), '}'), '')))), '[^-]', ''))) AS ?step2422) .
BIND(((?step2422 + ?targetMotifMatchRegionMatchBeginPositionMF_01436410) - 1) AS ?thisPositionOn101) .
BIND(?this AS ?pfs1t423) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn100))) AS ?pfsb98) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn101))) AS ?pfse99) .
FILTER ((BOUND(?thisPositionOn100) && BOUND(?thisPositionOn101))) .
BIND(URI(CONCAT(STR(?this), '#MF_01436a97')) AS ?annotation97) .
BIND(?this AS ?pfs96) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch428 faldo:location ?templateMotifSequenceMatchRegionP24077429 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP24077431 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP24077MF_01436424 .
?templateMotifSequenceMatchRegionP24077429 faldo:begin ?templateMotifSequenceMatchBeginP24077430 .
?templateMotifSequenceMatchBeginP24077430 faldo:position ?templateMotifSequenceMatchBeginPositionP24077425 ;
faldo:reference isoform:P24077-1 .
?templateMotifSequenceProfileAlignmentOperationP24077431 edam:has_input signature:MF_01436 ;
rdf:type edam:operation_0300 .
?targetMotifMatch432 faldo:location ?targetMotifMatchRegionMatch433 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01436435 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP24077MF_01436426 .
?targetMotifMatchRegionMatch433 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01436434 .
?targetMotifMatchRegionMatchBeginMF_01436434 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01436427 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01436435 edam:has_input signature:MF_01436 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24077MF_01436424, 1, (STRLEN(?templateMotifCigarP24077MF_01436424) - STRLEN(REPLACE(?templateMotifCigarP24077MF_01436424, CONCAT('^(?:-*[^-]){', STR(((278 - ?templateMotifSequenceMatchBeginPositionP24077425) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1436) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24077MF_01436426, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436426) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436426, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1436), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24077MF_01436426, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436426) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436426, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1436), '}'), '')))), '[^-]', ''))) AS ?step2437) .
BIND(((?step2437 + ?targetMotifMatchRegionMatchBeginPositionMF_01436427) - 1) AS ?thisPositionOn106) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24077MF_01436424, 1, (STRLEN(?templateMotifCigarP24077MF_01436424) - STRLEN(REPLACE(?templateMotifCigarP24077MF_01436424, CONCAT('^(?:-*[^-]){', STR(((287 - ?templateMotifSequenceMatchBeginPositionP24077425) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1438) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24077MF_01436426, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436426) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436426, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1438), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24077MF_01436426, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436426) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436426, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1438), '}'), '')))), '[^-]', ''))) AS ?step2439) .
BIND(((?step2439 + ?targetMotifMatchRegionMatchBeginPositionMF_01436427) - 1) AS ?thisPositionOn107) .
BIND(?this AS ?pfs1t440) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn106))) AS ?pfsb104) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn107))) AS ?pfse105) .
FILTER ((BOUND(?thisPositionOn106) && BOUND(?thisPositionOn107))) .
BIND(URI(CONCAT(STR(?this), '#MF_01436a103')) AS ?annotation103) .
BIND(?this AS ?pfs102) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch445 faldo:location ?templateMotifSequenceMatchRegionP24077446 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP24077448 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP24077MF_01436441 .
?templateMotifSequenceMatchRegionP24077446 faldo:begin ?templateMotifSequenceMatchBeginP24077447 .
?templateMotifSequenceMatchBeginP24077447 faldo:position ?templateMotifSequenceMatchBeginPositionP24077442 ;
faldo:reference isoform:P24077-1 .
?templateMotifSequenceProfileAlignmentOperationP24077448 edam:has_input signature:MF_01436 ;
rdf:type edam:operation_0300 .
?targetMotifMatch449 faldo:location ?targetMotifMatchRegionMatch450 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01436452 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP24077MF_01436443 .
?targetMotifMatchRegionMatch450 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01436451 .
?targetMotifMatchRegionMatchBeginMF_01436451 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01436444 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01436452 edam:has_input signature:MF_01436 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24077MF_01436441, 1, (STRLEN(?templateMotifCigarP24077MF_01436441) - STRLEN(REPLACE(?templateMotifCigarP24077MF_01436441, CONCAT('^(?:-*[^-]){', STR(((288 - ?templateMotifSequenceMatchBeginPositionP24077442) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1453) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24077MF_01436443, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436443) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436443, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1453), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24077MF_01436443, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436443) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436443, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1453), '}'), '')))), '[^-]', ''))) AS ?step2454) .
BIND(((?step2454 + ?targetMotifMatchRegionMatchBeginPositionMF_01436444) - 1) AS ?thisPositionOn112) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24077MF_01436441, 1, (STRLEN(?templateMotifCigarP24077MF_01436441) - STRLEN(REPLACE(?templateMotifCigarP24077MF_01436441, CONCAT('^(?:-*[^-]){', STR(((307 - ?templateMotifSequenceMatchBeginPositionP24077442) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1455) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24077MF_01436443, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436443) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436443, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1455), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24077MF_01436443, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436443) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436443, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1455), '}'), '')))), '[^-]', ''))) AS ?step2456) .
BIND(((?step2456 + ?targetMotifMatchRegionMatchBeginPositionMF_01436444) - 1) AS ?thisPositionOn113) .
BIND(?this AS ?pfs1t457) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn112))) AS ?pfsb110) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn113))) AS ?pfse111) .
FILTER ((BOUND(?thisPositionOn112) && BOUND(?thisPositionOn113))) .
BIND(URI(CONCAT(STR(?this), '#MF_01436a109')) AS ?annotation109) .
BIND(?this AS ?pfs108) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch462 faldo:location ?templateMotifSequenceMatchRegionP24077463 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP24077465 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP24077MF_01436458 .
?templateMotifSequenceMatchRegionP24077463 faldo:begin ?templateMotifSequenceMatchBeginP24077464 .
?templateMotifSequenceMatchBeginP24077464 faldo:position ?templateMotifSequenceMatchBeginPositionP24077459 ;
faldo:reference isoform:P24077-1 .
?templateMotifSequenceProfileAlignmentOperationP24077465 edam:has_input signature:MF_01436 ;
rdf:type edam:operation_0300 .
?targetMotifMatch466 faldo:location ?targetMotifMatchRegionMatch467 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01436469 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP24077MF_01436460 .
?targetMotifMatchRegionMatch467 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01436468 .
?targetMotifMatchRegionMatchBeginMF_01436468 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01436461 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01436469 edam:has_input signature:MF_01436 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24077MF_01436458, 1, (STRLEN(?templateMotifCigarP24077MF_01436458) - STRLEN(REPLACE(?templateMotifCigarP24077MF_01436458, CONCAT('^(?:-*[^-]){', STR(((308 - ?templateMotifSequenceMatchBeginPositionP24077459) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1470) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24077MF_01436460, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436460) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436460, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1470), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24077MF_01436460, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436460) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436460, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1470), '}'), '')))), '[^-]', ''))) AS ?step2471) .
BIND(((?step2471 + ?targetMotifMatchRegionMatchBeginPositionMF_01436461) - 1) AS ?thisPositionOn118) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24077MF_01436458, 1, (STRLEN(?templateMotifCigarP24077MF_01436458) - STRLEN(REPLACE(?templateMotifCigarP24077MF_01436458, CONCAT('^(?:-*[^-]){', STR(((313 - ?templateMotifSequenceMatchBeginPositionP24077459) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1472) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24077MF_01436460, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436460) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436460, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1472), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24077MF_01436460, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436460) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436460, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1472), '}'), '')))), '[^-]', ''))) AS ?step2473) .
BIND(((?step2473 + ?targetMotifMatchRegionMatchBeginPositionMF_01436461) - 1) AS ?thisPositionOn119) .
BIND(?this AS ?pfs1t474) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn118))) AS ?pfsb116) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn119))) AS ?pfse117) .
FILTER ((BOUND(?thisPositionOn118) && BOUND(?thisPositionOn119))) .
BIND(URI(CONCAT(STR(?this), '#MF_01436a115')) AS ?annotation115) .
BIND(?this AS ?pfs114) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch479 faldo:location ?templateMotifSequenceMatchRegionP24077480 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP24077482 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP24077MF_01436475 .
?templateMotifSequenceMatchRegionP24077480 faldo:begin ?templateMotifSequenceMatchBeginP24077481 .
?templateMotifSequenceMatchBeginP24077481 faldo:position ?templateMotifSequenceMatchBeginPositionP24077476 ;
faldo:reference isoform:P24077-1 .
?templateMotifSequenceProfileAlignmentOperationP24077482 edam:has_input signature:MF_01436 ;
rdf:type edam:operation_0300 .
?targetMotifMatch483 faldo:location ?targetMotifMatchRegionMatch484 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01436486 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP24077MF_01436477 .
?targetMotifMatchRegionMatch484 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01436485 .
?targetMotifMatchRegionMatchBeginMF_01436485 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01436478 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01436486 edam:has_input signature:MF_01436 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24077MF_01436475, 1, (STRLEN(?templateMotifCigarP24077MF_01436475) - STRLEN(REPLACE(?templateMotifCigarP24077MF_01436475, CONCAT('^(?:-*[^-]){', STR(((314 - ?templateMotifSequenceMatchBeginPositionP24077476) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1487) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24077MF_01436477, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436477) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436477, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1487), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24077MF_01436477, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436477) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436477, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1487), '}'), '')))), '[^-]', ''))) AS ?step2488) .
BIND(((?step2488 + ?targetMotifMatchRegionMatchBeginPositionMF_01436478) - 1) AS ?thisPositionOn124) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24077MF_01436475, 1, (STRLEN(?templateMotifCigarP24077MF_01436475) - STRLEN(REPLACE(?templateMotifCigarP24077MF_01436475, CONCAT('^(?:-*[^-]){', STR(((336 - ?templateMotifSequenceMatchBeginPositionP24077476) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1489) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24077MF_01436477, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436477) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436477, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1489), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24077MF_01436477, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436477) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436477, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1489), '}'), '')))), '[^-]', ''))) AS ?step2490) .
BIND(((?step2490 + ?targetMotifMatchRegionMatchBeginPositionMF_01436478) - 1) AS ?thisPositionOn125) .
BIND(?this AS ?pfs1t491) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn124))) AS ?pfsb122) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn125))) AS ?pfse123) .
FILTER ((BOUND(?thisPositionOn124) && BOUND(?thisPositionOn125))) .
BIND(URI(CONCAT(STR(?this), '#MF_01436a121')) AS ?annotation121) .
BIND(?this AS ?pfs120) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch496 faldo:location ?templateMotifSequenceMatchRegionP24077497 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP24077499 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP24077MF_01436492 .
?templateMotifSequenceMatchRegionP24077497 faldo:begin ?templateMotifSequenceMatchBeginP24077498 .
?templateMotifSequenceMatchBeginP24077498 faldo:position ?templateMotifSequenceMatchBeginPositionP24077493 ;
faldo:reference isoform:P24077-1 .
?templateMotifSequenceProfileAlignmentOperationP24077499 edam:has_input signature:MF_01436 ;
rdf:type edam:operation_0300 .
?targetMotifMatch500 faldo:location ?targetMotifMatchRegionMatch501 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01436503 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP24077MF_01436494 .
?targetMotifMatchRegionMatch501 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01436502 .
?targetMotifMatchRegionMatchBeginMF_01436502 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01436495 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01436503 edam:has_input signature:MF_01436 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24077MF_01436492, 1, (STRLEN(?templateMotifCigarP24077MF_01436492) - STRLEN(REPLACE(?templateMotifCigarP24077MF_01436492, CONCAT('^(?:-*[^-]){', STR(((337 - ?templateMotifSequenceMatchBeginPositionP24077493) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1504) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24077MF_01436494, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436494) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436494, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1504), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24077MF_01436494, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436494) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436494, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1504), '}'), '')))), '[^-]', ''))) AS ?step2505) .
BIND(((?step2505 + ?targetMotifMatchRegionMatchBeginPositionMF_01436495) - 1) AS ?thisPositionOn130) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24077MF_01436492, 1, (STRLEN(?templateMotifCigarP24077MF_01436492) - STRLEN(REPLACE(?templateMotifCigarP24077MF_01436492, CONCAT('^(?:-*[^-]){', STR(((356 - ?templateMotifSequenceMatchBeginPositionP24077493) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1506) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24077MF_01436494, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436494) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436494, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1506), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24077MF_01436494, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436494) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436494, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1506), '}'), '')))), '[^-]', ''))) AS ?step2507) .
BIND(((?step2507 + ?targetMotifMatchRegionMatchBeginPositionMF_01436495) - 1) AS ?thisPositionOn131) .
BIND(?this AS ?pfs1t508) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn130))) AS ?pfsb128) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn131))) AS ?pfse129) .
FILTER ((BOUND(?thisPositionOn130) && BOUND(?thisPositionOn131))) .
BIND(URI(CONCAT(STR(?this), '#MF_01436a127')) AS ?annotation127) .
BIND(?this AS ?pfs126) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch513 faldo:location ?templateMotifSequenceMatchRegionP24077514 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP24077516 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP24077MF_01436509 .
?templateMotifSequenceMatchRegionP24077514 faldo:begin ?templateMotifSequenceMatchBeginP24077515 .
?templateMotifSequenceMatchBeginP24077515 faldo:position ?templateMotifSequenceMatchBeginPositionP24077510 ;
faldo:reference isoform:P24077-1 .
?templateMotifSequenceProfileAlignmentOperationP24077516 edam:has_input signature:MF_01436 ;
rdf:type edam:operation_0300 .
?targetMotifMatch517 faldo:location ?targetMotifMatchRegionMatch518 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01436520 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP24077MF_01436511 .
?targetMotifMatchRegionMatch518 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01436519 .
?targetMotifMatchRegionMatchBeginMF_01436519 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01436512 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01436520 edam:has_input signature:MF_01436 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24077MF_01436509, 1, (STRLEN(?templateMotifCigarP24077MF_01436509) - STRLEN(REPLACE(?templateMotifCigarP24077MF_01436509, CONCAT('^(?:-*[^-]){', STR(((357 - ?templateMotifSequenceMatchBeginPositionP24077510) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1521) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24077MF_01436511, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436511) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436511, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1521), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24077MF_01436511, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436511) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436511, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1521), '}'), '')))), '[^-]', ''))) AS ?step2522) .
BIND(((?step2522 + ?targetMotifMatchRegionMatchBeginPositionMF_01436512) - 1) AS ?thisPositionOn136) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24077MF_01436509, 1, (STRLEN(?templateMotifCigarP24077MF_01436509) - STRLEN(REPLACE(?templateMotifCigarP24077MF_01436509, CONCAT('^(?:-*[^-]){', STR(((377 - ?templateMotifSequenceMatchBeginPositionP24077510) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1523) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24077MF_01436511, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436511) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436511, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1523), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24077MF_01436511, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436511) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436511, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1523), '}'), '')))), '[^-]', ''))) AS ?step2524) .
BIND(((?step2524 + ?targetMotifMatchRegionMatchBeginPositionMF_01436512) - 1) AS ?thisPositionOn137) .
BIND(?this AS ?pfs1t525) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn136))) AS ?pfsb134) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn137))) AS ?pfse135) .
FILTER ((BOUND(?thisPositionOn136) && BOUND(?thisPositionOn137))) .
BIND(URI(CONCAT(STR(?this), '#MF_01436a133')) AS ?annotation133) .
BIND(?this AS ?pfs132) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch530 faldo:location ?templateMotifSequenceMatchRegionP24077531 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP24077533 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP24077MF_01436526 .
?templateMotifSequenceMatchRegionP24077531 faldo:begin ?templateMotifSequenceMatchBeginP24077532 .
?templateMotifSequenceMatchBeginP24077532 faldo:position ?templateMotifSequenceMatchBeginPositionP24077527 ;
faldo:reference isoform:P24077-1 .
?templateMotifSequenceProfileAlignmentOperationP24077533 edam:has_input signature:MF_01436 ;
rdf:type edam:operation_0300 .
?targetMotifMatch534 faldo:location ?targetMotifMatchRegionMatch535 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01436537 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP24077MF_01436528 .
?targetMotifMatchRegionMatch535 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01436536 .
?targetMotifMatchRegionMatchBeginMF_01436536 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01436529 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01436537 edam:has_input signature:MF_01436 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24077MF_01436526, 1, (STRLEN(?templateMotifCigarP24077MF_01436526) - STRLEN(REPLACE(?templateMotifCigarP24077MF_01436526, CONCAT('^(?:-*[^-]){', STR(((378 - ?templateMotifSequenceMatchBeginPositionP24077527) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1538) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24077MF_01436528, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436528) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436528, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1538), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24077MF_01436528, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436528) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436528, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1538), '}'), '')))), '[^-]', ''))) AS ?step2539) .
BIND(((?step2539 + ?targetMotifMatchRegionMatchBeginPositionMF_01436529) - 1) AS ?thisPositionOn142) .
BIND(?thisPositionOn142 AS ?thisPositionOn143) .
BIND(?this AS ?pfs1t540) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn142))) AS ?pfsb140) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn143))) AS ?pfse141) .
FILTER (BOUND(?thisPositionOn142)) .
BIND(URI(CONCAT(STR(?this), '#MF_01436a139')) AS ?annotation139) .
BIND(?this AS ?pfs138) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch545 faldo:location ?templateMotifSequenceMatchRegionP24077546 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP24077548 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP24077MF_01436541 .
?templateMotifSequenceMatchRegionP24077546 faldo:begin ?templateMotifSequenceMatchBeginP24077547 .
?templateMotifSequenceMatchBeginP24077547 faldo:position ?templateMotifSequenceMatchBeginPositionP24077542 ;
faldo:reference isoform:P24077-1 .
?templateMotifSequenceProfileAlignmentOperationP24077548 edam:has_input signature:MF_01436 ;
rdf:type edam:operation_0300 .
?targetMotifMatch549 faldo:location ?targetMotifMatchRegionMatch550 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01436552 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP24077MF_01436543 .
?targetMotifMatchRegionMatch550 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01436551 .
?targetMotifMatchRegionMatchBeginMF_01436551 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01436544 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01436552 edam:has_input signature:MF_01436 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24077MF_01436541, 1, (STRLEN(?templateMotifCigarP24077MF_01436541) - STRLEN(REPLACE(?templateMotifCigarP24077MF_01436541, CONCAT('^(?:-*[^-]){', STR(((379 - ?templateMotifSequenceMatchBeginPositionP24077542) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1553) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24077MF_01436543, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436543) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436543, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1553), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24077MF_01436543, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436543) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436543, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1553), '}'), '')))), '[^-]', ''))) AS ?step2554) .
BIND(((?step2554 + ?targetMotifMatchRegionMatchBeginPositionMF_01436544) - 1) AS ?thisPositionOn148) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24077MF_01436541, 1, (STRLEN(?templateMotifCigarP24077MF_01436541) - STRLEN(REPLACE(?templateMotifCigarP24077MF_01436541, CONCAT('^(?:-*[^-]){', STR(((399 - ?templateMotifSequenceMatchBeginPositionP24077542) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1555) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24077MF_01436543, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436543) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436543, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1555), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24077MF_01436543, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436543) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436543, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1555), '}'), '')))), '[^-]', ''))) AS ?step2556) .
BIND(((?step2556 + ?targetMotifMatchRegionMatchBeginPositionMF_01436544) - 1) AS ?thisPositionOn149) .
BIND(?this AS ?pfs1t557) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn148))) AS ?pfsb146) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn149))) AS ?pfse147) .
FILTER ((BOUND(?thisPositionOn148) && BOUND(?thisPositionOn149))) .
BIND(URI(CONCAT(STR(?this), '#MF_01436a145')) AS ?annotation145) .
BIND(?this AS ?pfs144) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch562 faldo:location ?templateMotifSequenceMatchRegionP24077563 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP24077565 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP24077MF_01436558 .
?templateMotifSequenceMatchRegionP24077563 faldo:begin ?templateMotifSequenceMatchBeginP24077564 .
?templateMotifSequenceMatchBeginP24077564 faldo:position ?templateMotifSequenceMatchBeginPositionP24077559 ;
faldo:reference isoform:P24077-1 .
?templateMotifSequenceProfileAlignmentOperationP24077565 edam:has_input signature:MF_01436 ;
rdf:type edam:operation_0300 .
?targetMotifMatch566 faldo:location ?targetMotifMatchRegionMatch567 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01436569 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP24077MF_01436560 .
?targetMotifMatchRegionMatch567 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01436568 .
?targetMotifMatchRegionMatchBeginMF_01436568 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01436561 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01436569 edam:has_input signature:MF_01436 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24077MF_01436558, 1, (STRLEN(?templateMotifCigarP24077MF_01436558) - STRLEN(REPLACE(?templateMotifCigarP24077MF_01436558, CONCAT('^(?:-*[^-]){', STR(((400 - ?templateMotifSequenceMatchBeginPositionP24077559) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1570) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24077MF_01436560, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436560) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436560, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1570), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24077MF_01436560, 1, (STRLEN(?targetMotifMatchCigarP24077MF_01436560) - STRLEN(REPLACE(?targetMotifMatchCigarP24077MF_01436560, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1570), '}'), '')))), '[^-]', ''))) AS ?step2571) .
BIND(((?step2571 + ?targetMotifMatchRegionMatchBeginPositionMF_01436561) - 1) AS ?thisPositionOn154) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn155) .
BIND(?this AS ?pfs1t572) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn154))) AS ?pfsb152) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn155))) AS ?pfse153) .
FILTER ((BOUND(?thisPositionOn154) && BOUND(?thisPositionOn155))) .
BIND(URI(CONCAT(STR(?this), '#MF_01436a151')) AS ?annotation151) .
BIND(?this AS ?pfs150) .
}
}
"xsd:string |
