| http://purl.uniprot.org/unirules/MF_03106#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:816914 up:source unirule:MF_03106 .
_:816915 up:source unirule:MF_03106 .
_:816916 up:source unirule:MF_03106 .
_:816917 up:source unirule:MF_03106 .
_:816918 up:source unirule:MF_03106 .
_:816919 up:source unirule:MF_03106 .
_:816920 up:source unirule:MF_03106 .
_:816921 up:source unirule:MF_03106 .
_:816922 up:source unirule:MF_03106 .
_:816923 up:source unirule:MF_03106 .
_:816924 up:source unirule:MF_03106 .
_:816925 up:source unirule:MF_03106 .
_:816926 up:source unirule:MF_03106 .
_:816927 up:source unirule:MF_03106 .
_:816928 up:source unirule:MF_03106 .
_:816929 up:source unirule:MF_03106 .
_:816930 up:source unirule:MF_03106 .
_:816931 up:source unirule:MF_03106 .
_:816932 up:source unirule:MF_03106 .
_:816933 up:source unirule:MF_03106 .
_:816934 up:source unirule:MF_03106 .
_:816935 up:source unirule:MF_03106 .
_:816936 up:source unirule:MF_03106 .
_:816937 up:source unirule:MF_03106 .
_:816938 up:source unirule:MF_03106 .
_:816939 up:source unirule:MF_03106 .
_:816940 up:source unirule:MF_03106 .
_:816941 up:source unirule:MF_03106 .
_:816942 up:source unirule:MF_03106 .
_:816943 up:source unirule:MF_03106 .
_:816944 up:source unirule:MF_03106 .
_:816945 up:source unirule:MF_03106 .
_:816946 up:source unirule:MF_03106 .
_:816947 up:source unirule:MF_03106 .
_:816948 up:source unirule:MF_03106 .
_:816949 up:source unirule:MF_03106 .
_:816950 up:source unirule:MF_03106 .
_:816951 up:source unirule:MF_03106 .
_:816952 up:source unirule:MF_03106 .
_:816953 up:source unirule:MF_03106 .
_:816954 up:source unirule:MF_03106 .
_:816955 up:source unirule:MF_03106 .
_:816956 up:source unirule:MF_03106 .
_:816957 up:source unirule:MF_03106 .
_:816958 up:source unirule:MF_03106 .
_:816959 up:source unirule:MF_03106 .
_:816960 up:source unirule:MF_03106 .
?this up:annotation ?annotation1 ,
?annotation2 ,
?annotation4 ,
?annotation5 ,
?annotation6 ;
up:classifiedWith GO:0000103 ,
GO:0004781 ,
GO:0005737 ,
GO:0070814 ,
keyword:198 ,
keyword:28 ,
keyword:486 ,
keyword:547 ,
keyword:548 ,
keyword:67 ,
keyword:808 ,
keyword:963 .
?gene0 skos:prefLabel 'MET3' .
?annotation1 a up:Function_Annotation ;
rdfs:comment "Catalyzes the first intracellular reaction of sulfate assimilation, forming adenosine-5'-phosphosulfate (APS) from inorganic sulfate and ATP. Plays an important role in sulfate activation as a component of the biosynthesis pathway of sulfur-containing amino acids." .
?annotation2 up:activity ?activity3 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity3 up:catalyticActivity ;
up:enzymeClass .
?annotation4 a up:Pathway_Annotation ;
rdfs:comment 'Sulfur metabolism; hydrogen sulfide biosynthesis; sulfite from sulfate: step 1/3.' .
?annotation5 a up:Subunit_Annotation ;
rdfs:comment 'Homohexamer. Dimer of trimers.' .
?annotation6 a up:Subcellular_Location_Annotation .
?annotation6li7 up:cellularComponent .
?case8 up:classifiedWith keyword:21 .
?case10 up:alternativeName ?name12 ,
?name13 ,
?name14 ;
up:classifiedWith keyword:597 ;
up:recommendedName ?name11 .
?name11 up:ecName '2.7.7.4' ;
up:fullName 'Sulfate adenylyltransferase' ;
rdf:type up:Structured_Name .
?name12 up:fullName 'ATP-sulfurylase' ;
rdf:type up:Structured_Name .
?name13 up:fullName 'Methionine-requiring protein 3' ;
rdf:type up:Structured_Name .
?name14 up:fullName 'Sulfate adenylate transferase' ;
up:shortName 'SAT' ;
rdf:type up:Structured_Name .
?case15 up:alternativeName ?name17 ,
?name18 ;
up:recommendedName ?name16 .
?name16 up:ecName '2.7.7.4' ;
up:fullName 'Sulfate adenylyltransferase' ;
rdf:type up:Structured_Name .
?name17 up:fullName 'ATP-sulfurylase' ;
rdf:type up:Structured_Name .
?name18 up:fullName 'Sulfate adenylate transferase' ;
up:shortName 'SAT' ;
rdf:type up:Structured_Name .
?pfs19 up:annotation ?annotation20 .
?annotation20 faldo:begin ?pfsb21 ;
faldo:end ?pfse22 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'N-terminal' .
?pfsb21 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfse22 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfs25 up:annotation ?annotation26 .
?annotation26 faldo:begin ?pfsb27 ;
faldo:end ?pfse28 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Catalytic' .
?pfsb27 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?pfse28 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?pfs31 up:annotation ?annotation32 .
?annotation32 faldo:begin ?pfsb33 ;
faldo:end ?pfse34 ;
up:ligand ?ligand35 ;
rdf:type up:Binding_Site_Annotation .
?pfsb33 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?pfse34 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?ligand35 rdfs:subClassOf chebi:30616 .
?pfs38 up:annotation ?annotation39 .
?annotation39 faldo:begin ?pfsb40 ;
faldo:end ?pfse41 ;
up:ligand ?ligand42 ;
rdf:type up:Binding_Site_Annotation .
?pfsb40 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?pfse41 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?ligand42 rdfs:subClassOf chebi:30616 .
?pfs45 up:annotation ?annotation46 .
?annotation46 faldo:begin ?pfsb47 ;
faldo:end ?pfse48 ;
rdf:type up:Active_Site_Annotation .
?pfsb47 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?pfse48 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?pfs51 up:annotation ?annotation52 .
?annotation52 faldo:begin ?pfsb53 ;
faldo:end ?pfse54 ;
rdf:type up:Active_Site_Annotation .
?pfsb53 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
?pfse54 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?pfs57 up:annotation ?annotation58 .
?annotation58 faldo:begin ?pfsb59 ;
faldo:end ?pfse60 ;
rdf:type up:Active_Site_Annotation .
?pfsb59 faldo:position ?thisPositionOn61 ;
rdf:type faldo:ExactPosition .
?pfse60 faldo:position ?thisPositionOn62 ;
rdf:type faldo:ExactPosition .
?pfs63 up:annotation ?annotation64 .
?annotation64 faldo:begin ?pfsb65 ;
faldo:end ?pfse66 ;
up:ligand ?ligand67 ;
rdf:type up:Binding_Site_Annotation .
?pfsb65 faldo:position ?thisPositionOn68 ;
rdf:type faldo:ExactPosition .
?pfse66 faldo:position ?thisPositionOn69 ;
rdf:type faldo:ExactPosition .
?ligand67 rdfs:subClassOf chebi:16189 .
?pfs70 up:annotation ?annotation71 .
?annotation71 faldo:begin ?pfsb72 ;
faldo:end ?pfse73 ;
up:ligand ?ligand74 ;
rdf:type up:Binding_Site_Annotation .
?pfsb72 faldo:position ?thisPositionOn75 ;
rdf:type faldo:ExactPosition .
?pfse73 faldo:position ?thisPositionOn76 ;
rdf:type faldo:ExactPosition .
?ligand74 rdfs:subClassOf chebi:16189 .
?pfs77 up:annotation ?annotation78 .
?annotation78 faldo:begin ?pfsb79 ;
faldo:end ?pfse80 ;
up:ligand ?ligand81 ;
rdf:type up:Binding_Site_Annotation .
?pfsb79 faldo:position ?thisPositionOn82 ;
rdf:type faldo:ExactPosition .
?pfse80 faldo:position ?thisPositionOn83 ;
rdf:type faldo:ExactPosition .
?ligand81 rdfs:subClassOf chebi:16189 .
?pfs84 up:annotation ?annotation85 .
?annotation85 faldo:begin ?pfsb86 ;
faldo:end ?pfse87 ;
up:ligand ?ligand88 ;
rdf:type up:Binding_Site_Annotation .
?pfsb86 faldo:position ?thisPositionOn89 ;
rdf:type faldo:ExactPosition .
?pfse87 faldo:position ?thisPositionOn90 ;
rdf:type faldo:ExactPosition .
?ligand88 rdfs:subClassOf chebi:30616 .
?pfs91 up:annotation ?annotation92 .
?annotation92 faldo:begin ?pfsb93 ;
faldo:end ?pfse94 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Transition state stabilizer' .
?pfsb93 faldo:position ?thisPositionOn95 ;
rdf:type faldo:ExactPosition .
?pfse94 faldo:position ?thisPositionOn96 ;
rdf:type faldo:ExactPosition .
?pfs97 up:annotation ?annotation98 .
?annotation98 faldo:begin ?pfsb99 ;
faldo:end ?pfse100 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Transition state stabilizer' .
?pfsb99 faldo:position ?thisPositionOn101 ;
rdf:type faldo:ExactPosition .
?pfse100 faldo:position ?thisPositionOn102 ;
rdf:type faldo:ExactPosition .
?pfs103 up:annotation ?annotation104 .
?annotation104 faldo:begin ?pfsb105 ;
faldo:end ?pfse106 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Induces change in substrate recognition on ATP binding' .
?pfsb105 faldo:position ?thisPositionOn107 ;
rdf:type faldo:ExactPosition .
?pfse106 faldo:position ?thisPositionOn108 ;
rdf:type faldo:ExactPosition .
?pfs109 up:annotation ?annotation110 .
?annotation110 faldo:begin ?pfsb111 ;
faldo:end ?pfse112 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Required for oligomerization; adenylyl-sulfate kinase-like' .
?pfsb111 faldo:position ?thisPositionOn113 ;
rdf:type faldo:ExactPosition .
?pfse112 faldo:position ?thisPositionOn114 ;
rdf:type faldo:ExactPosition .
?pfs115 up:annotation ?annotation116 .
?annotation116 faldo:begin ?pfsb117 ;
faldo:end ?pfse118 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Allosteric regulation domain; adenylyl-sulfate kinase-like' .
?pfsb117 faldo:position ?thisPositionOn119 ;
rdf:type faldo:ExactPosition .
?pfse118 faldo:position ?thisPositionOn120 ;
rdf:type faldo:ExactPosition .
?pfs121 up:annotation ?annotation122 .
?annotation122 faldo:begin ?pfsb123 ;
faldo:end ?pfse124 ;
up:ligand ?ligand125 ;
rdf:type up:Binding_Site_Annotation .
?pfsb123 faldo:position ?thisPositionOn126 ;
rdf:type faldo:ExactPosition .
?pfse124 faldo:position ?thisPositionOn127 ;
rdf:type faldo:ExactPosition .
?ligand125 rdfs:subClassOf chebi:58339 .
?pfs128 up:annotation ?annotation129 .
?annotation129 faldo:begin ?pfsb130 ;
faldo:end ?pfse131 ;
up:ligand ?ligand132 ;
rdf:type up:Binding_Site_Annotation .
?pfsb130 faldo:position ?thisPositionOn133 ;
rdf:type faldo:ExactPosition .
?pfse131 faldo:position ?thisPositionOn134 ;
rdf:type faldo:ExactPosition .
?ligand132 rdfs:subClassOf chebi:58339 .
?pfs135 up:annotation ?annotation136 .
?annotation136 faldo:begin ?pfsb137 ;
faldo:end ?pfse138 ;
up:ligand ?ligand139 ;
rdf:type up:Binding_Site_Annotation .
?pfsb137 faldo:position ?thisPositionOn140 ;
rdf:type faldo:ExactPosition .
?pfse138 faldo:position ?thisPositionOn141 ;
rdf:type faldo:ExactPosition .
?ligand139 rdfs:subClassOf chebi:58339 .
?pfs142 up:annotation ?annotation143 .
?annotation143 faldo:begin ?pfsb144 ;
faldo:end ?pfse145 ;
up:ligand ?ligand146 ;
rdf:type up:Binding_Site_Annotation .
?pfsb144 faldo:position ?thisPositionOn147 ;
rdf:type faldo:ExactPosition .
?pfse145 faldo:position ?thisPositionOn148 ;
rdf:type faldo:ExactPosition .
?ligand146 rdfs:subClassOf chebi:58339 .
_:816961 a rdf:Statement ;
up:attribution _:816914 ;
rdf:subject ?gene0 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene0 .
_:816962 a rdf:Statement ;
up:attribution _:816915 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation1 .
_:816963 a rdf:Statement ;
up:attribution _:816916 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:816964 a rdf:Statement ;
up:attribution _:816917 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:816965 a rdf:Statement ;
up:attribution _:816918 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:816966 a rdf:Statement ;
up:attribution _:816919 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:816967 a rdf:Statement ;
up:attribution _:816920 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:816968 a rdf:Statement ;
up:attribution _:816921 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:28 .
_:816969 a rdf:Statement ;
up:attribution _:816922 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:816970 a rdf:Statement ;
up:attribution _:816923 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:198 .
_:816971 a rdf:Statement ;
up:attribution _:816924 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:486 .
_:816972 a rdf:Statement ;
up:attribution _:816925 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:816973 a rdf:Statement ;
up:attribution _:816926 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:548 .
_:816974 a rdf:Statement ;
up:attribution _:816927 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:816975 a rdf:Statement ;
up:attribution _:816928 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004781 .
_:816976 a rdf:Statement ;
up:attribution _:816929 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000103 .
_:816977 a rdf:Statement ;
up:attribution _:816930 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0070814 .
_:816978 a rdf:Statement ;
up:attribution _:816931 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:816979 a rdf:Statement ;
up:attribution _:816932 ;
rdf:subject ?case8 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:21 .
_:816980 a rdf:Statement ;
up:attribution _:816933 ;
rdf:subject ?case10 ;
rdf:predicate up:recommendedName ;
rdf:object ?name11 .
_:816981 a rdf:Statement ;
up:attribution _:816934 ;
rdf:subject ?case10 ;
rdf:predicate up:alternativeName ;
rdf:object ?name12 .
_:816982 a rdf:Statement ;
up:attribution _:816935 ;
rdf:subject ?case10 ;
rdf:predicate up:alternativeName ;
rdf:object ?name13 .
_:816983 a rdf:Statement ;
up:attribution _:816936 ;
rdf:subject ?case10 ;
rdf:predicate up:alternativeName ;
rdf:object ?name14 .
_:816984 a rdf:Statement ;
up:attribution _:816937 ;
rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:597 .
_:816985 a rdf:Statement ;
up:attribution _:816938 ;
rdf:subject ?case15 ;
rdf:predicate up:recommendedName ;
rdf:object ?name16 .
_:816986 a rdf:Statement ;
up:attribution _:816939 ;
rdf:subject ?case15 ;
rdf:predicate up:alternativeName ;
rdf:object ?name17 .
_:816987 a rdf:Statement ;
up:attribution _:816940 ;
rdf:subject ?case15 ;
rdf:predicate up:alternativeName ;
rdf:object ?name18 .
_:816988 a rdf:Statement ;
up:source unirule:MF_03106 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:816989 a rdf:Statement ;
up:attribution _:816941 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:816990 a rdf:Statement ;
up:source unirule:MF_03106 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:816991 a rdf:Statement ;
up:attribution _:816942 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:816992 a rdf:Statement ;
up:source unirule:MF_03106 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:816993 a rdf:Statement ;
up:attribution _:816943 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:816994 a rdf:Statement ;
up:source unirule:MF_03106 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:816995 a rdf:Statement ;
up:attribution _:816944 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:816996 a rdf:Statement ;
up:source unirule:MF_03106 ;
rdf:subject ?pfs45 ;
rdf:predicate up:annotation ;
rdf:object ?annotation46 .
_:816997 a rdf:Statement ;
up:attribution _:816945 ;
rdf:subject ?pfs45 ;
rdf:predicate up:annotation ;
rdf:object ?annotation46 .
_:816998 a rdf:Statement ;
up:source unirule:MF_03106 ;
rdf:subject ?pfs51 ;
rdf:predicate up:annotation ;
rdf:object ?annotation52 .
_:816999 a rdf:Statement ;
up:attribution _:816946 ;
rdf:subject ?pfs51 ;
rdf:predicate up:annotation ;
rdf:object ?annotation52 .
_:817000 a rdf:Statement ;
up:source unirule:MF_03106 ;
rdf:subject ?pfs57 ;
rdf:predicate up:annotation ;
rdf:object ?annotation58 .
_:817001 a rdf:Statement ;
up:attribution _:816947 ;
rdf:subject ?pfs57 ;
rdf:predicate up:annotation ;
rdf:object ?annotation58 .
_:817002 a rdf:Statement ;
up:source unirule:MF_03106 ;
rdf:subject ?pfs63 ;
rdf:predicate up:annotation ;
rdf:object ?annotation64 .
_:817003 a rdf:Statement ;
up:attribution _:816948 ;
rdf:subject ?pfs63 ;
rdf:predicate up:annotation ;
rdf:object ?annotation64 .
_:817004 a rdf:Statement ;
up:source unirule:MF_03106 ;
rdf:subject ?pfs70 ;
rdf:predicate up:annotation ;
rdf:object ?annotation71 .
_:817005 a rdf:Statement ;
up:attribution _:816949 ;
rdf:subject ?pfs70 ;
rdf:predicate up:annotation ;
rdf:object ?annotation71 .
_:817006 a rdf:Statement ;
up:source unirule:MF_03106 ;
rdf:subject ?pfs77 ;
rdf:predicate up:annotation ;
rdf:object ?annotation78 .
_:817007 a rdf:Statement ;
up:attribution _:816950 ;
rdf:subject ?pfs77 ;
rdf:predicate up:annotation ;
rdf:object ?annotation78 .
_:817008 a rdf:Statement ;
up:source unirule:MF_03106 ;
rdf:subject ?pfs84 ;
rdf:predicate up:annotation ;
rdf:object ?annotation85 .
_:817009 a rdf:Statement ;
up:attribution _:816951 ;
rdf:subject ?pfs84 ;
rdf:predicate up:annotation ;
rdf:object ?annotation85 .
_:817010 a rdf:Statement ;
up:source unirule:MF_03106 ;
rdf:subject ?pfs91 ;
rdf:predicate up:annotation ;
rdf:object ?annotation92 .
_:817011 a rdf:Statement ;
up:attribution _:816952 ;
rdf:subject ?pfs91 ;
rdf:predicate up:annotation ;
rdf:object ?annotation92 .
_:817012 a rdf:Statement ;
up:source unirule:MF_03106 ;
rdf:subject ?pfs97 ;
rdf:predicate up:annotation ;
rdf:object ?annotation98 .
_:817013 a rdf:Statement ;
up:attribution _:816953 ;
rdf:subject ?pfs97 ;
rdf:predicate up:annotation ;
rdf:object ?annotation98 .
_:817014 a rdf:Statement ;
up:source unirule:MF_03106 ;
rdf:subject ?pfs103 ;
rdf:predicate up:annotation ;
rdf:object ?annotation104 .
_:817015 a rdf:Statement ;
up:attribution _:816954 ;
rdf:subject ?pfs103 ;
rdf:predicate up:annotation ;
rdf:object ?annotation104 .
_:817016 a rdf:Statement ;
up:source unirule:MF_03106 ;
rdf:subject ?pfs109 ;
rdf:predicate up:annotation ;
rdf:object ?annotation110 .
_:817017 a rdf:Statement ;
up:attribution _:816955 ;
rdf:subject ?pfs109 ;
rdf:predicate up:annotation ;
rdf:object ?annotation110 .
_:817018 a rdf:Statement ;
up:source unirule:MF_03106 ;
rdf:subject ?pfs115 ;
rdf:predicate up:annotation ;
rdf:object ?annotation116 .
_:817019 a rdf:Statement ;
up:attribution _:816956 ;
rdf:subject ?pfs115 ;
rdf:predicate up:annotation ;
rdf:object ?annotation116 .
_:817020 a rdf:Statement ;
up:source unirule:MF_03106 ;
rdf:subject ?pfs121 ;
rdf:predicate up:annotation ;
rdf:object ?annotation122 .
_:817021 a rdf:Statement ;
up:attribution _:816957 ;
rdf:subject ?pfs121 ;
rdf:predicate up:annotation ;
rdf:object ?annotation122 .
_:817022 a rdf:Statement ;
up:source unirule:MF_03106 ;
rdf:subject ?pfs128 ;
rdf:predicate up:annotation ;
rdf:object ?annotation129 .
_:817023 a rdf:Statement ;
up:attribution _:816958 ;
rdf:subject ?pfs128 ;
rdf:predicate up:annotation ;
rdf:object ?annotation129 .
_:817024 a rdf:Statement ;
up:source unirule:MF_03106 ;
rdf:subject ?pfs135 ;
rdf:predicate up:annotation ;
rdf:object ?annotation136 .
_:817025 a rdf:Statement ;
up:attribution _:816959 ;
rdf:subject ?pfs135 ;
rdf:predicate up:annotation ;
rdf:object ?annotation136 .
_:817026 a rdf:Statement ;
up:source unirule:MF_03106 ;
rdf:subject ?pfs142 ;
rdf:predicate up:annotation ;
rdf:object ?annotation143 .
_:817027 a rdf:Statement ;
up:attribution _:816960 ;
rdf:subject ?pfs142 ;
rdf:predicate up:annotation ;
rdf:object ?annotation143 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_03106
#Rule MF_03106 Created by:? on:2012-10-03 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_03106 .
?thisOrganism rdfs:subClassOf+ taxon:4751 .
BIND(URI(CONCAT(STR(?this), '#MF_03106a1')) AS ?annotation1) .
BIND(URI(CONCAT(STR(?this), '#MF_03106a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_03106a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_03106a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_03106a6')) AS ?annotation6) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch153 faldo:location ?templateMotifSequenceMatchRegionP08536154 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08536156 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08536MF_03106149 .
?templateMotifSequenceMatchRegionP08536154 faldo:begin ?templateMotifSequenceMatchBeginP08536155 .
?templateMotifSequenceMatchBeginP08536155 faldo:position ?templateMotifSequenceMatchBeginPositionP08536150 ;
faldo:reference isoform:P08536-1 .
?templateMotifSequenceProfileAlignmentOperationP08536156 edam:has_input signature:MF_03106 ;
rdf:type edam:operation_0300 .
?targetMotifMatch157 faldo:location ?targetMotifMatchRegionMatch158 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03106160 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08536MF_03106151 .
?targetMotifMatchRegionMatch158 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03106159 .
?targetMotifMatchRegionMatchBeginMF_03106159 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03106152 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03106160 edam:has_input signature:MF_03106 ;
rdf:type edam:operation_0300 .
BIND(1 AS ?thisPositionOn23) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08536MF_03106149, 1, (STRLEN(?templateMotifCigarP08536MF_03106149) - STRLEN(REPLACE(?templateMotifCigarP08536MF_03106149, CONCAT('^(?:-*[^-]){', STR(((167 - ?templateMotifSequenceMatchBeginPositionP08536150) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1161) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08536MF_03106151, 1, (STRLEN(?targetMotifMatchCigarP08536MF_03106151) - STRLEN(REPLACE(?targetMotifMatchCigarP08536MF_03106151, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1161), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08536MF_03106151, 1, (STRLEN(?targetMotifMatchCigarP08536MF_03106151) - STRLEN(REPLACE(?targetMotifMatchCigarP08536MF_03106151, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1161), '}'), '')))), '[^-]', ''))) AS ?step2162) .
BIND(((?step2162 + ?targetMotifMatchRegionMatchBeginPositionMF_03106152) - 1) AS ?thisPositionOn24) .
BIND(?this AS ?pfs1t163) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse22) .
FILTER ((BOUND(?thisPositionOn23) && BOUND(?thisPositionOn24))) .
BIND(URI(CONCAT(STR(?this), '#MF_03106a20')) AS ?annotation20) .
BIND(?this AS ?pfs19) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch168 faldo:location ?templateMotifSequenceMatchRegionP08536169 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08536171 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08536MF_03106164 .
?templateMotifSequenceMatchRegionP08536169 faldo:begin ?templateMotifSequenceMatchBeginP08536170 .
?templateMotifSequenceMatchBeginP08536170 faldo:position ?templateMotifSequenceMatchBeginPositionP08536165 ;
faldo:reference isoform:P08536-1 .
?templateMotifSequenceProfileAlignmentOperationP08536171 edam:has_input signature:MF_03106 ;
rdf:type edam:operation_0300 .
?targetMotifMatch172 faldo:location ?targetMotifMatchRegionMatch173 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03106175 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08536MF_03106166 .
?targetMotifMatchRegionMatch173 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03106174 .
?targetMotifMatchRegionMatchBeginMF_03106174 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03106167 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03106175 edam:has_input signature:MF_03106 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08536MF_03106164, 1, (STRLEN(?templateMotifCigarP08536MF_03106164) - STRLEN(REPLACE(?templateMotifCigarP08536MF_03106164, CONCAT('^(?:-*[^-]){', STR(((168 - ?templateMotifSequenceMatchBeginPositionP08536165) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1176) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08536MF_03106166, 1, (STRLEN(?targetMotifMatchCigarP08536MF_03106166) - STRLEN(REPLACE(?targetMotifMatchCigarP08536MF_03106166, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1176), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08536MF_03106166, 1, (STRLEN(?targetMotifMatchCigarP08536MF_03106166) - STRLEN(REPLACE(?targetMotifMatchCigarP08536MF_03106166, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1176), '}'), '')))), '[^-]', ''))) AS ?step2177) .
BIND(((?step2177 + ?targetMotifMatchRegionMatchBeginPositionMF_03106167) - 1) AS ?thisPositionOn29) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08536MF_03106164, 1, (STRLEN(?templateMotifCigarP08536MF_03106164) - STRLEN(REPLACE(?templateMotifCigarP08536MF_03106164, CONCAT('^(?:-*[^-]){', STR(((393 - ?templateMotifSequenceMatchBeginPositionP08536165) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1178) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08536MF_03106166, 1, (STRLEN(?targetMotifMatchCigarP08536MF_03106166) - STRLEN(REPLACE(?targetMotifMatchCigarP08536MF_03106166, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1178), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08536MF_03106166, 1, (STRLEN(?targetMotifMatchCigarP08536MF_03106166) - STRLEN(REPLACE(?targetMotifMatchCigarP08536MF_03106166, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1178), '}'), '')))), '[^-]', ''))) AS ?step2179) .
BIND(((?step2179 + ?targetMotifMatchRegionMatchBeginPositionMF_03106167) - 1) AS ?thisPositionOn30) .
BIND(?this AS ?pfs1t180) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb27) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse28) .
FILTER ((BOUND(?thisPositionOn29) && BOUND(?thisPositionOn30))) .
BIND(URI(CONCAT(STR(?this), '#MF_03106a26')) AS ?annotation26) .
BIND(?this AS ?pfs25) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch185 faldo:location ?templateMotifSequenceMatchRegionP08536186 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08536188 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08536MF_03106181 .
?templateMotifSequenceMatchRegionP08536186 faldo:begin ?templateMotifSequenceMatchBeginP08536187 .
?templateMotifSequenceMatchBeginP08536187 faldo:position ?templateMotifSequenceMatchBeginPositionP08536182 ;
faldo:reference isoform:P08536-1 .
?templateMotifSequenceProfileAlignmentOperationP08536188 edam:has_input signature:MF_03106 ;
rdf:type edam:operation_0300 .
?targetMotifMatch189 faldo:location ?targetMotifMatchRegionMatch190 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03106192 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08536MF_03106183 .
?targetMotifMatchRegionMatch190 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03106191 .
?targetMotifMatchRegionMatchBeginMF_03106191 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03106184 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03106192 edam:has_input signature:MF_03106 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08536MF_03106181, 1, (STRLEN(?templateMotifCigarP08536MF_03106181) - STRLEN(REPLACE(?templateMotifCigarP08536MF_03106181, CONCAT('^(?:-*[^-]){', STR(((195 - ?templateMotifSequenceMatchBeginPositionP08536182) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1193) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08536MF_03106183, 1, (STRLEN(?targetMotifMatchCigarP08536MF_03106183) - STRLEN(REPLACE(?targetMotifMatchCigarP08536MF_03106183, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1193), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08536MF_03106183, 1, (STRLEN(?targetMotifMatchCigarP08536MF_03106183) - STRLEN(REPLACE(?targetMotifMatchCigarP08536MF_03106183, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1193), '}'), '')))), '[^-]', ''))) AS ?step2194) .
BIND(((?step2194 + ?targetMotifMatchRegionMatchBeginPositionMF_03106184) - 1) AS ?thisPositionOn36) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08536MF_03106181, 1, (STRLEN(?templateMotifCigarP08536MF_03106181) - STRLEN(REPLACE(?templateMotifCigarP08536MF_03106181, CONCAT('^(?:-*[^-]){', STR(((198 - ?templateMotifSequenceMatchBeginPositionP08536182) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1195) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08536MF_03106183, 1, (STRLEN(?targetMotifMatchCigarP08536MF_03106183) - STRLEN(REPLACE(?targetMotifMatchCigarP08536MF_03106183, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1195), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08536MF_03106183, 1, (STRLEN(?targetMotifMatchCigarP08536MF_03106183) - STRLEN(REPLACE(?targetMotifMatchCigarP08536MF_03106183, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1195), '}'), '')))), '[^-]', ''))) AS ?step2196) .
BIND(((?step2196 + ?targetMotifMatchRegionMatchBeginPositionMF_03106184) - 1) AS ?thisPositionOn37) .
BIND(?this AS ?pfs1t197) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfsb33) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfse34) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn36, (?thisPositionOn37 - ?thisPositionOn36)) = 'QTRN')) .
BIND(URI(CONCAT(STR(?this), '#MF_03106a32')) AS ?annotation32) .
BIND(?this AS ?pfs31) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch202 faldo:location ?templateMotifSequenceMatchRegionP08536203 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08536205 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08536MF_03106198 .
?templateMotifSequenceMatchRegionP08536203 faldo:begin ?templateMotifSequenceMatchBeginP08536204 .
?templateMotifSequenceMatchBeginP08536204 faldo:position ?templateMotifSequenceMatchBeginPositionP08536199 ;
faldo:reference isoform:P08536-1 .
?templateMotifSequenceProfileAlignmentOperationP08536205 edam:has_input signature:MF_03106 ;
rdf:type edam:operation_0300 .
?targetMotifMatch206 faldo:location ?targetMotifMatchRegionMatch207 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03106209 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08536MF_03106200 .
?targetMotifMatchRegionMatch207 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03106208 .
?targetMotifMatchRegionMatchBeginMF_03106208 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03106201 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03106209 edam:has_input signature:MF_03106 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08536MF_03106198, 1, (STRLEN(?templateMotifCigarP08536MF_03106198) - STRLEN(REPLACE(?templateMotifCigarP08536MF_03106198, CONCAT('^(?:-*[^-]){', STR(((289 - ?templateMotifSequenceMatchBeginPositionP08536199) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1210) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08536MF_03106200, 1, (STRLEN(?targetMotifMatchCigarP08536MF_03106200) - STRLEN(REPLACE(?targetMotifMatchCigarP08536MF_03106200, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1210), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08536MF_03106200, 1, (STRLEN(?targetMotifMatchCigarP08536MF_03106200) - STRLEN(REPLACE(?targetMotifMatchCigarP08536MF_03106200, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1210), '}'), '')))), '[^-]', ''))) AS ?step2211) .
BIND(((?step2211 + ?targetMotifMatchRegionMatchBeginPositionMF_03106201) - 1) AS ?thisPositionOn43) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08536MF_03106198, 1, (STRLEN(?templateMotifCigarP08536MF_03106198) - STRLEN(REPLACE(?templateMotifCigarP08536MF_03106198, CONCAT('^(?:-*[^-]){', STR(((292 - ?templateMotifSequenceMatchBeginPositionP08536199) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1212) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08536MF_03106200, 1, (STRLEN(?targetMotifMatchCigarP08536MF_03106200) - STRLEN(REPLACE(?targetMotifMatchCigarP08536MF_03106200, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1212), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08536MF_03106200, 1, (STRLEN(?targetMotifMatchCigarP08536MF_03106200) - STRLEN(REPLACE(?targetMotifMatchCigarP08536MF_03106200, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1212), '}'), '')))), '[^-]', ''))) AS ?step2213) .
BIND(((?step2213 + ?targetMotifMatchRegionMatchBeginPositionMF_03106201) - 1) AS ?thisPositionOn44) .
BIND(?this AS ?pfs1t214) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfsb40) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfse41) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn43, (?thisPositionOn44 - ?thisPositionOn43)) = 'GRDH')) .
BIND(URI(CONCAT(STR(?this), '#MF_03106a39')) AS ?annotation39) .
BIND(?this AS ?pfs38) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch219 faldo:location ?templateMotifSequenceMatchRegionP08536220 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08536222 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08536MF_03106215 .
?templateMotifSequenceMatchRegionP08536220 faldo:begin ?templateMotifSequenceMatchBeginP08536221 .
?templateMotifSequenceMatchBeginP08536221 faldo:position ?templateMotifSequenceMatchBeginPositionP08536216 ;
faldo:reference isoform:P08536-1 .
?templateMotifSequenceProfileAlignmentOperationP08536222 edam:has_input signature:MF_03106 ;
rdf:type edam:operation_0300 .
?targetMotifMatch223 faldo:location ?targetMotifMatchRegionMatch224 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03106226 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08536MF_03106217 .
?targetMotifMatchRegionMatch224 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03106225 .
?targetMotifMatchRegionMatchBeginMF_03106225 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03106218 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03106226 edam:has_input signature:MF_03106 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08536MF_03106215, 1, (STRLEN(?templateMotifCigarP08536MF_03106215) - STRLEN(REPLACE(?templateMotifCigarP08536MF_03106215, CONCAT('^(?:-*[^-]){', STR(((196 - ?templateMotifSequenceMatchBeginPositionP08536216) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1227) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08536MF_03106217, 1, (STRLEN(?targetMotifMatchCigarP08536MF_03106217) - STRLEN(REPLACE(?targetMotifMatchCigarP08536MF_03106217, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1227), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08536MF_03106217, 1, (STRLEN(?targetMotifMatchCigarP08536MF_03106217) - STRLEN(REPLACE(?targetMotifMatchCigarP08536MF_03106217, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1227), '}'), '')))), '[^-]', ''))) AS ?step2228) .
BIND(((?step2228 + ?targetMotifMatchRegionMatchBeginPositionMF_03106218) - 1) AS ?thisPositionOn49) .
BIND(?thisPositionOn49 AS ?thisPositionOn50) .
BIND(?this AS ?pfs1t229) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfsb47) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfse48) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn49, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_03106a46')) AS ?annotation46) .
BIND(?this AS ?pfs45) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch234 faldo:location ?templateMotifSequenceMatchRegionP08536235 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08536237 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08536MF_03106230 .
?templateMotifSequenceMatchRegionP08536235 faldo:begin ?templateMotifSequenceMatchBeginP08536236 .
?templateMotifSequenceMatchBeginP08536236 faldo:position ?templateMotifSequenceMatchBeginPositionP08536231 ;
faldo:reference isoform:P08536-1 .
?templateMotifSequenceProfileAlignmentOperationP08536237 edam:has_input signature:MF_03106 ;
rdf:type edam:operation_0300 .
?targetMotifMatch238 faldo:location ?targetMotifMatchRegionMatch239 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03106241 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08536MF_03106232 .
?targetMotifMatchRegionMatch239 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03106240 .
?targetMotifMatchRegionMatchBeginMF_03106240 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03106233 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03106241 edam:has_input signature:MF_03106 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08536MF_03106230, 1, (STRLEN(?templateMotifCigarP08536MF_03106230) - STRLEN(REPLACE(?templateMotifCigarP08536MF_03106230, CONCAT('^(?:-*[^-]){', STR(((197 - ?templateMotifSequenceMatchBeginPositionP08536231) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1242) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08536MF_03106232, 1, (STRLEN(?targetMotifMatchCigarP08536MF_03106232) - STRLEN(REPLACE(?targetMotifMatchCigarP08536MF_03106232, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1242), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08536MF_03106232, 1, (STRLEN(?targetMotifMatchCigarP08536MF_03106232) - STRLEN(REPLACE(?targetMotifMatchCigarP08536MF_03106232, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1242), '}'), '')))), '[^-]', ''))) AS ?step2243) .
BIND(((?step2243 + ?targetMotifMatchRegionMatchBeginPositionMF_03106233) - 1) AS ?thisPositionOn55) .
BIND(?thisPositionOn55 AS ?thisPositionOn56) .
BIND(?this AS ?pfs1t244) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfsb53) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfse54) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn55, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_03106a52')) AS ?annotation52) .
BIND(?this AS ?pfs51) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch249 faldo:location ?templateMotifSequenceMatchRegionP08536250 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08536252 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08536MF_03106245 .
?templateMotifSequenceMatchRegionP08536250 faldo:begin ?templateMotifSequenceMatchBeginP08536251 .
?templateMotifSequenceMatchBeginP08536251 faldo:position ?templateMotifSequenceMatchBeginPositionP08536246 ;
faldo:reference isoform:P08536-1 .
?templateMotifSequenceProfileAlignmentOperationP08536252 edam:has_input signature:MF_03106 ;
rdf:type edam:operation_0300 .
?targetMotifMatch253 faldo:location ?targetMotifMatchRegionMatch254 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03106256 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08536MF_03106247 .
?targetMotifMatchRegionMatch254 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03106255 .
?targetMotifMatchRegionMatchBeginMF_03106255 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03106248 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03106256 edam:has_input signature:MF_03106 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08536MF_03106245, 1, (STRLEN(?templateMotifCigarP08536MF_03106245) - STRLEN(REPLACE(?templateMotifCigarP08536MF_03106245, CONCAT('^(?:-*[^-]){', STR(((198 - ?templateMotifSequenceMatchBeginPositionP08536246) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1257) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08536MF_03106247, 1, (STRLEN(?targetMotifMatchCigarP08536MF_03106247) - STRLEN(REPLACE(?targetMotifMatchCigarP08536MF_03106247, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1257), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08536MF_03106247, 1, (STRLEN(?targetMotifMatchCigarP08536MF_03106247) - STRLEN(REPLACE(?targetMotifMatchCigarP08536MF_03106247, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1257), '}'), '')))), '[^-]', ''))) AS ?step2258) .
BIND(((?step2258 + ?targetMotifMatchRegionMatchBeginPositionMF_03106248) - 1) AS ?thisPositionOn61) .
BIND(?thisPositionOn61 AS ?thisPositionOn62) .
BIND(?this AS ?pfs1t259) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfsb59) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfse60) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn61, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_03106a58')) AS ?annotation58) .
BIND(?this AS ?pfs57) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch264 faldo:location ?templateMotifSequenceMatchRegionP08536265 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08536267 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08536MF_03106260 .
?templateMotifSequenceMatchRegionP08536265 faldo:begin ?templateMotifSequenceMatchBeginP08536266 .
?templateMotifSequenceMatchBeginP08536266 faldo:position ?templateMotifSequenceMatchBeginPositionP08536261 ;
faldo:reference isoform:P08536-1 .
?templateMotifSequenceProfileAlignmentOperationP08536267 edam:has_input signature:MF_03106 ;
rdf:type edam:operation_0300 .
?targetMotifMatch268 faldo:location ?targetMotifMatchRegionMatch269 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03106271 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08536MF_03106262 .
?targetMotifMatchRegionMatch269 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03106270 .
?targetMotifMatchRegionMatchBeginMF_03106270 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03106263 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03106271 edam:has_input signature:MF_03106 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08536MF_03106260, 1, (STRLEN(?templateMotifCigarP08536MF_03106260) - STRLEN(REPLACE(?templateMotifCigarP08536MF_03106260, CONCAT('^(?:-*[^-]){', STR(((195 - ?templateMotifSequenceMatchBeginPositionP08536261) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1272) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08536MF_03106262, 1, (STRLEN(?targetMotifMatchCigarP08536MF_03106262) - STRLEN(REPLACE(?targetMotifMatchCigarP08536MF_03106262, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1272), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08536MF_03106262, 1, (STRLEN(?targetMotifMatchCigarP08536MF_03106262) - STRLEN(REPLACE(?targetMotifMatchCigarP08536MF_03106262, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1272), '}'), '')))), '[^-]', ''))) AS ?step2273) .
BIND(((?step2273 + ?targetMotifMatchRegionMatchBeginPositionMF_03106263) - 1) AS ?thisPositionOn68) .
BIND(?thisPositionOn68 AS ?thisPositionOn69) .
BIND(?this AS ?pfs1t274) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn68))) AS ?pfsb65) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn69))) AS ?pfse66) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn68, 1) = 'Q')) .
BIND(URI(CONCAT(STR(?this), '#MF_03106a64')) AS ?annotation64) .
BIND(?this AS ?pfs63) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch279 faldo:location ?templateMotifSequenceMatchRegionP08536280 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08536282 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08536MF_03106275 .
?templateMotifSequenceMatchRegionP08536280 faldo:begin ?templateMotifSequenceMatchBeginP08536281 .
?templateMotifSequenceMatchBeginP08536281 faldo:position ?templateMotifSequenceMatchBeginPositionP08536276 ;
faldo:reference isoform:P08536-1 .
?templateMotifSequenceProfileAlignmentOperationP08536282 edam:has_input signature:MF_03106 ;
rdf:type edam:operation_0300 .
?targetMotifMatch283 faldo:location ?targetMotifMatchRegionMatch284 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03106286 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08536MF_03106277 .
?targetMotifMatchRegionMatch284 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03106285 .
?targetMotifMatchRegionMatchBeginMF_03106285 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03106278 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03106286 edam:has_input signature:MF_03106 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08536MF_03106275, 1, (STRLEN(?templateMotifCigarP08536MF_03106275) - STRLEN(REPLACE(?templateMotifCigarP08536MF_03106275, CONCAT('^(?:-*[^-]){', STR(((197 - ?templateMotifSequenceMatchBeginPositionP08536276) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1287) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08536MF_03106277, 1, (STRLEN(?targetMotifMatchCigarP08536MF_03106277) - STRLEN(REPLACE(?targetMotifMatchCigarP08536MF_03106277, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1287), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08536MF_03106277, 1, (STRLEN(?targetMotifMatchCigarP08536MF_03106277) - STRLEN(REPLACE(?targetMotifMatchCigarP08536MF_03106277, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1287), '}'), '')))), '[^-]', ''))) AS ?step2288) .
BIND(((?step2288 + ?targetMotifMatchRegionMatchBeginPositionMF_03106278) - 1) AS ?thisPositionOn75) .
BIND(?thisPositionOn75 AS ?thisPositionOn76) .
BIND(?this AS ?pfs1t289) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn75))) AS ?pfsb72) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn76))) AS ?pfse73) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn75, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_03106a71')) AS ?annotation71) .
BIND(?this AS ?pfs70) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch294 faldo:location ?templateMotifSequenceMatchRegionP08536295 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08536297 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08536MF_03106290 .
?templateMotifSequenceMatchRegionP08536295 faldo:begin ?templateMotifSequenceMatchBeginP08536296 .
?templateMotifSequenceMatchBeginP08536296 faldo:position ?templateMotifSequenceMatchBeginPositionP08536291 ;
faldo:reference isoform:P08536-1 .
?templateMotifSequenceProfileAlignmentOperationP08536297 edam:has_input signature:MF_03106 ;
rdf:type edam:operation_0300 .
?targetMotifMatch298 faldo:location ?targetMotifMatchRegionMatch299 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03106301 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08536MF_03106292 .
?targetMotifMatchRegionMatch299 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03106300 .
?targetMotifMatchRegionMatchBeginMF_03106300 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03106293 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03106301 edam:has_input signature:MF_03106 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08536MF_03106290, 1, (STRLEN(?templateMotifCigarP08536MF_03106290) - STRLEN(REPLACE(?templateMotifCigarP08536MF_03106290, CONCAT('^(?:-*[^-]){', STR(((293 - ?templateMotifSequenceMatchBeginPositionP08536291) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1302) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08536MF_03106292, 1, (STRLEN(?targetMotifMatchCigarP08536MF_03106292) - STRLEN(REPLACE(?targetMotifMatchCigarP08536MF_03106292, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1302), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08536MF_03106292, 1, (STRLEN(?targetMotifMatchCigarP08536MF_03106292) - STRLEN(REPLACE(?targetMotifMatchCigarP08536MF_03106292, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1302), '}'), '')))), '[^-]', ''))) AS ?step2303) .
BIND(((?step2303 + ?targetMotifMatchRegionMatchBeginPositionMF_03106293) - 1) AS ?thisPositionOn82) .
BIND(?thisPositionOn82 AS ?thisPositionOn83) .
BIND(?this AS ?pfs1t304) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn82))) AS ?pfsb79) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn83))) AS ?pfse80) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn82, 1) = 'A')) .
BIND(URI(CONCAT(STR(?this), '#MF_03106a78')) AS ?annotation78) .
BIND(?this AS ?pfs77) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch309 faldo:location ?templateMotifSequenceMatchRegionP08536310 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08536312 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08536MF_03106305 .
?templateMotifSequenceMatchRegionP08536310 faldo:begin ?templateMotifSequenceMatchBeginP08536311 .
?templateMotifSequenceMatchBeginP08536311 faldo:position ?templateMotifSequenceMatchBeginPositionP08536306 ;
faldo:reference isoform:P08536-1 .
?templateMotifSequenceProfileAlignmentOperationP08536312 edam:has_input signature:MF_03106 ;
rdf:type edam:operation_0300 .
?targetMotifMatch313 faldo:location ?targetMotifMatchRegionMatch314 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03106316 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08536MF_03106307 .
?targetMotifMatchRegionMatch314 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03106315 .
?targetMotifMatchRegionMatchBeginMF_03106315 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03106308 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03106316 edam:has_input signature:MF_03106 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08536MF_03106305, 1, (STRLEN(?templateMotifCigarP08536MF_03106305) - STRLEN(REPLACE(?templateMotifCigarP08536MF_03106305, CONCAT('^(?:-*[^-]){', STR(((331 - ?templateMotifSequenceMatchBeginPositionP08536306) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1317) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08536MF_03106307, 1, (STRLEN(?targetMotifMatchCigarP08536MF_03106307) - STRLEN(REPLACE(?targetMotifMatchCigarP08536MF_03106307, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1317), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08536MF_03106307, 1, (STRLEN(?targetMotifMatchCigarP08536MF_03106307) - STRLEN(REPLACE(?targetMotifMatchCigarP08536MF_03106307, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1317), '}'), '')))), '[^-]', ''))) AS ?step2318) .
BIND(((?step2318 + ?targetMotifMatchRegionMatchBeginPositionMF_03106308) - 1) AS ?thisPositionOn89) .
BIND(?thisPositionOn89 AS ?thisPositionOn90) .
BIND(?this AS ?pfs1t319) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn89))) AS ?pfsb86) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn90))) AS ?pfse87) .
FILTER (REGEX('[MILV]', SUBSTR(?thisSequenceValue, ?thisPositionOn89, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_03106a85')) AS ?annotation85) .
BIND(?this AS ?pfs84) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch324 faldo:location ?templateMotifSequenceMatchRegionP08536325 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08536327 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08536MF_03106320 .
?templateMotifSequenceMatchRegionP08536325 faldo:begin ?templateMotifSequenceMatchBeginP08536326 .
?templateMotifSequenceMatchBeginP08536326 faldo:position ?templateMotifSequenceMatchBeginPositionP08536321 ;
faldo:reference isoform:P08536-1 .
?templateMotifSequenceProfileAlignmentOperationP08536327 edam:has_input signature:MF_03106 ;
rdf:type edam:operation_0300 .
?targetMotifMatch328 faldo:location ?targetMotifMatchRegionMatch329 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03106331 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08536MF_03106322 .
?targetMotifMatchRegionMatch329 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03106330 .
?targetMotifMatchRegionMatchBeginMF_03106330 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03106323 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03106331 edam:has_input signature:MF_03106 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08536MF_03106320, 1, (STRLEN(?templateMotifCigarP08536MF_03106320) - STRLEN(REPLACE(?templateMotifCigarP08536MF_03106320, CONCAT('^(?:-*[^-]){', STR(((201 - ?templateMotifSequenceMatchBeginPositionP08536321) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1332) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08536MF_03106322, 1, (STRLEN(?targetMotifMatchCigarP08536MF_03106322) - STRLEN(REPLACE(?targetMotifMatchCigarP08536MF_03106322, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1332), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08536MF_03106322, 1, (STRLEN(?targetMotifMatchCigarP08536MF_03106322) - STRLEN(REPLACE(?targetMotifMatchCigarP08536MF_03106322, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1332), '}'), '')))), '[^-]', ''))) AS ?step2333) .
BIND(((?step2333 + ?targetMotifMatchRegionMatchBeginPositionMF_03106323) - 1) AS ?thisPositionOn95) .
BIND(?thisPositionOn95 AS ?thisPositionOn96) .
BIND(?this AS ?pfs1t334) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn95))) AS ?pfsb93) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn96))) AS ?pfse94) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn95, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_03106a92')) AS ?annotation92) .
BIND(?this AS ?pfs91) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch339 faldo:location ?templateMotifSequenceMatchRegionP08536340 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08536342 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08536MF_03106335 .
?templateMotifSequenceMatchRegionP08536340 faldo:begin ?templateMotifSequenceMatchBeginP08536341 .
?templateMotifSequenceMatchBeginP08536341 faldo:position ?templateMotifSequenceMatchBeginPositionP08536336 ;
faldo:reference isoform:P08536-1 .
?templateMotifSequenceProfileAlignmentOperationP08536342 edam:has_input signature:MF_03106 ;
rdf:type edam:operation_0300 .
?targetMotifMatch343 faldo:location ?targetMotifMatchRegionMatch344 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03106346 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08536MF_03106337 .
?targetMotifMatchRegionMatch344 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03106345 .
?targetMotifMatchRegionMatchBeginMF_03106345 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03106338 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03106346 edam:has_input signature:MF_03106 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08536MF_03106335, 1, (STRLEN(?templateMotifCigarP08536MF_03106335) - STRLEN(REPLACE(?templateMotifCigarP08536MF_03106335, CONCAT('^(?:-*[^-]){', STR(((204 - ?templateMotifSequenceMatchBeginPositionP08536336) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1347) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08536MF_03106337, 1, (STRLEN(?targetMotifMatchCigarP08536MF_03106337) - STRLEN(REPLACE(?targetMotifMatchCigarP08536MF_03106337, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1347), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08536MF_03106337, 1, (STRLEN(?targetMotifMatchCigarP08536MF_03106337) - STRLEN(REPLACE(?targetMotifMatchCigarP08536MF_03106337, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1347), '}'), '')))), '[^-]', ''))) AS ?step2348) .
BIND(((?step2348 + ?targetMotifMatchRegionMatchBeginPositionMF_03106338) - 1) AS ?thisPositionOn101) .
BIND(?thisPositionOn101 AS ?thisPositionOn102) .
BIND(?this AS ?pfs1t349) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn101))) AS ?pfsb99) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn102))) AS ?pfse100) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn101, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_03106a98')) AS ?annotation98) .
BIND(?this AS ?pfs97) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch354 faldo:location ?templateMotifSequenceMatchRegionP08536355 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08536357 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08536MF_03106350 .
?templateMotifSequenceMatchRegionP08536355 faldo:begin ?templateMotifSequenceMatchBeginP08536356 .
?templateMotifSequenceMatchBeginP08536356 faldo:position ?templateMotifSequenceMatchBeginPositionP08536351 ;
faldo:reference isoform:P08536-1 .
?templateMotifSequenceProfileAlignmentOperationP08536357 edam:has_input signature:MF_03106 ;
rdf:type edam:operation_0300 .
?targetMotifMatch358 faldo:location ?targetMotifMatchRegionMatch359 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03106361 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08536MF_03106352 .
?targetMotifMatchRegionMatch359 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03106360 .
?targetMotifMatchRegionMatchBeginMF_03106360 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03106353 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03106361 edam:has_input signature:MF_03106 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08536MF_03106350, 1, (STRLEN(?templateMotifCigarP08536MF_03106350) - STRLEN(REPLACE(?templateMotifCigarP08536MF_03106350, CONCAT('^(?:-*[^-]){', STR(((328 - ?templateMotifSequenceMatchBeginPositionP08536351) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1362) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08536MF_03106352, 1, (STRLEN(?targetMotifMatchCigarP08536MF_03106352) - STRLEN(REPLACE(?targetMotifMatchCigarP08536MF_03106352, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1362), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08536MF_03106352, 1, (STRLEN(?targetMotifMatchCigarP08536MF_03106352) - STRLEN(REPLACE(?targetMotifMatchCigarP08536MF_03106352, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1362), '}'), '')))), '[^-]', ''))) AS ?step2363) .
BIND(((?step2363 + ?targetMotifMatchRegionMatchBeginPositionMF_03106353) - 1) AS ?thisPositionOn107) .
BIND(?thisPositionOn107 AS ?thisPositionOn108) .
BIND(?this AS ?pfs1t364) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn107))) AS ?pfsb105) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn108))) AS ?pfse106) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn107, 1) = 'F')) .
BIND(URI(CONCAT(STR(?this), '#MF_03106a104')) AS ?annotation104) .
BIND(?this AS ?pfs103) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch369 faldo:location ?templateMotifSequenceMatchRegionP08536370 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08536372 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08536MF_03106365 .
?templateMotifSequenceMatchRegionP08536370 faldo:begin ?templateMotifSequenceMatchBeginP08536371 .
?templateMotifSequenceMatchBeginP08536371 faldo:position ?templateMotifSequenceMatchBeginPositionP08536366 ;
faldo:reference isoform:P08536-1 .
?templateMotifSequenceProfileAlignmentOperationP08536372 edam:has_input signature:MF_03106 ;
rdf:type edam:operation_0300 .
?targetMotifMatch373 faldo:location ?targetMotifMatchRegionMatch374 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03106376 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08536MF_03106367 .
?targetMotifMatchRegionMatch374 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03106375 .
?targetMotifMatchRegionMatchBeginMF_03106375 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03106368 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03106376 edam:has_input signature:MF_03106 ;
rdf:type edam:operation_0300 .
FILTER (! (EXISTS {
?this rdfs:seeAlso .
})) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08536MF_03106365, 1, (STRLEN(?templateMotifCigarP08536MF_03106365) - STRLEN(REPLACE(?templateMotifCigarP08536MF_03106365, CONCAT('^(?:-*[^-]){', STR(((394 - ?templateMotifSequenceMatchBeginPositionP08536366) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1377) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08536MF_03106367, 1, (STRLEN(?targetMotifMatchCigarP08536MF_03106367) - STRLEN(REPLACE(?targetMotifMatchCigarP08536MF_03106367, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1377), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08536MF_03106367, 1, (STRLEN(?targetMotifMatchCigarP08536MF_03106367) - STRLEN(REPLACE(?targetMotifMatchCigarP08536MF_03106367, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1377), '}'), '')))), '[^-]', ''))) AS ?step2378) .
BIND(((?step2378 + ?targetMotifMatchRegionMatchBeginPositionMF_03106368) - 1) AS ?thisPositionOn113) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn114) .
BIND(?this AS ?pfs2t379) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn113))) AS ?pfsb111) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn114))) AS ?pfse112) .
FILTER ((BOUND(?thisPositionOn113) && BOUND(?thisPositionOn114))) .
BIND(URI(CONCAT(STR(?this), '#MF_03106a110')) AS ?annotation110) .
BIND(?this AS ?pfs109) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch384 faldo:location ?templateMotifSequenceMatchRegionQ12650385 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ12650387 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ12650MF_03106380 .
?templateMotifSequenceMatchRegionQ12650385 faldo:begin ?templateMotifSequenceMatchBeginQ12650386 .
?templateMotifSequenceMatchBeginQ12650386 faldo:position ?templateMotifSequenceMatchBeginPositionQ12650381 ;
faldo:reference isoform:Q12650-1 .
?templateMotifSequenceProfileAlignmentOperationQ12650387 edam:has_input signature:MF_03106 ;
rdf:type edam:operation_0300 .
?targetMotifMatch388 faldo:location ?targetMotifMatchRegionMatch389 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03106391 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ12650MF_03106382 .
?targetMotifMatchRegionMatch389 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03106390 .
?targetMotifMatchRegionMatchBeginMF_03106390 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03106383 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03106391 edam:has_input signature:MF_03106 ;
rdf:type edam:operation_0300 .
?this rdfs:seeAlso .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ12650MF_03106380, 1, (STRLEN(?templateMotifCigarQ12650MF_03106380) - STRLEN(REPLACE(?templateMotifCigarQ12650MF_03106380, CONCAT('^(?:-*[^-]){', STR(((394 - ?templateMotifSequenceMatchBeginPositionQ12650381) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1392) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ12650MF_03106382, 1, (STRLEN(?targetMotifMatchCigarQ12650MF_03106382) - STRLEN(REPLACE(?targetMotifMatchCigarQ12650MF_03106382, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1392), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ12650MF_03106382, 1, (STRLEN(?targetMotifMatchCigarQ12650MF_03106382) - STRLEN(REPLACE(?targetMotifMatchCigarQ12650MF_03106382, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1392), '}'), '')))), '[^-]', ''))) AS ?step2393) .
BIND(((?step2393 + ?targetMotifMatchRegionMatchBeginPositionMF_03106383) - 1) AS ?thisPositionOn119) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn120) .
BIND(?this AS ?pfs3t394) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn119))) AS ?pfsb117) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn120))) AS ?pfse118) .
FILTER ((BOUND(?thisPositionOn119) && BOUND(?thisPositionOn120))) .
BIND(URI(CONCAT(STR(?this), '#MF_03106a116')) AS ?annotation116) .
BIND(?this AS ?pfs115) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch399 faldo:location ?templateMotifSequenceMatchRegionQ12650400 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ12650402 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ12650MF_03106395 .
?templateMotifSequenceMatchRegionQ12650400 faldo:begin ?templateMotifSequenceMatchBeginQ12650401 .
?templateMotifSequenceMatchBeginQ12650401 faldo:position ?templateMotifSequenceMatchBeginPositionQ12650396 ;
faldo:reference isoform:Q12650-1 .
?templateMotifSequenceProfileAlignmentOperationQ12650402 edam:has_input signature:MF_03106 ;
rdf:type edam:operation_0300 .
?targetMotifMatch403 faldo:location ?targetMotifMatchRegionMatch404 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03106406 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ12650MF_03106397 .
?targetMotifMatchRegionMatch404 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03106405 .
?targetMotifMatchRegionMatchBeginMF_03106405 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03106398 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03106406 edam:has_input signature:MF_03106 ;
rdf:type edam:operation_0300 .
?this rdfs:seeAlso .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ12650MF_03106395, 1, (STRLEN(?templateMotifCigarQ12650MF_03106395) - STRLEN(REPLACE(?templateMotifCigarQ12650MF_03106395, CONCAT('^(?:-*[^-]){', STR(((433 - ?templateMotifSequenceMatchBeginPositionQ12650396) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1407) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ12650MF_03106397, 1, (STRLEN(?targetMotifMatchCigarQ12650MF_03106397) - STRLEN(REPLACE(?targetMotifMatchCigarQ12650MF_03106397, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1407), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ12650MF_03106397, 1, (STRLEN(?targetMotifMatchCigarQ12650MF_03106397) - STRLEN(REPLACE(?targetMotifMatchCigarQ12650MF_03106397, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1407), '}'), '')))), '[^-]', ''))) AS ?step2408) .
BIND(((?step2408 + ?targetMotifMatchRegionMatchBeginPositionMF_03106398) - 1) AS ?thisPositionOn126) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ12650MF_03106395, 1, (STRLEN(?templateMotifCigarQ12650MF_03106395) - STRLEN(REPLACE(?templateMotifCigarQ12650MF_03106395, CONCAT('^(?:-*[^-]){', STR(((436 - ?templateMotifSequenceMatchBeginPositionQ12650396) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1409) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ12650MF_03106397, 1, (STRLEN(?targetMotifMatchCigarQ12650MF_03106397) - STRLEN(REPLACE(?targetMotifMatchCigarQ12650MF_03106397, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1409), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ12650MF_03106397, 1, (STRLEN(?targetMotifMatchCigarQ12650MF_03106397) - STRLEN(REPLACE(?targetMotifMatchCigarQ12650MF_03106397, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1409), '}'), '')))), '[^-]', ''))) AS ?step2410) .
BIND(((?step2410 + ?targetMotifMatchRegionMatchBeginPositionMF_03106398) - 1) AS ?thisPositionOn127) .
BIND(?this AS ?pfs3t411) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn126))) AS ?pfsb123) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn127))) AS ?pfse124) .
FILTER (REGEX('[DE][ARNDCQEGHILKMFPSTWYVBZJUOX]{2)R', SUBSTR(?thisSequenceValue, ?thisPositionOn126, (?thisPositionOn127 - ?thisPositionOn126)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03106a122')) AS ?annotation122) .
BIND(?this AS ?pfs121) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch416 faldo:location ?templateMotifSequenceMatchRegionQ12650417 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ12650419 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ12650MF_03106412 .
?templateMotifSequenceMatchRegionQ12650417 faldo:begin ?templateMotifSequenceMatchBeginQ12650418 .
?templateMotifSequenceMatchBeginQ12650418 faldo:position ?templateMotifSequenceMatchBeginPositionQ12650413 ;
faldo:reference isoform:Q12650-1 .
?templateMotifSequenceProfileAlignmentOperationQ12650419 edam:has_input signature:MF_03106 ;
rdf:type edam:operation_0300 .
?targetMotifMatch420 faldo:location ?targetMotifMatchRegionMatch421 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03106423 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ12650MF_03106414 .
?targetMotifMatchRegionMatch421 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03106422 .
?targetMotifMatchRegionMatchBeginMF_03106422 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03106415 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03106423 edam:has_input signature:MF_03106 ;
rdf:type edam:operation_0300 .
?this rdfs:seeAlso .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ12650MF_03106412, 1, (STRLEN(?templateMotifCigarQ12650MF_03106412) - STRLEN(REPLACE(?templateMotifCigarQ12650MF_03106412, CONCAT('^(?:-*[^-]){', STR(((476 - ?templateMotifSequenceMatchBeginPositionQ12650413) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1424) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ12650MF_03106414, 1, (STRLEN(?targetMotifMatchCigarQ12650MF_03106414) - STRLEN(REPLACE(?targetMotifMatchCigarQ12650MF_03106414, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1424), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ12650MF_03106414, 1, (STRLEN(?targetMotifMatchCigarQ12650MF_03106414) - STRLEN(REPLACE(?targetMotifMatchCigarQ12650MF_03106414, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1424), '}'), '')))), '[^-]', ''))) AS ?step2425) .
BIND(((?step2425 + ?targetMotifMatchRegionMatchBeginPositionMF_03106415) - 1) AS ?thisPositionOn133) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ12650MF_03106412, 1, (STRLEN(?templateMotifCigarQ12650MF_03106412) - STRLEN(REPLACE(?templateMotifCigarQ12650MF_03106412, CONCAT('^(?:-*[^-]){', STR(((477 - ?templateMotifSequenceMatchBeginPositionQ12650413) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1426) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ12650MF_03106414, 1, (STRLEN(?targetMotifMatchCigarQ12650MF_03106414) - STRLEN(REPLACE(?targetMotifMatchCigarQ12650MF_03106414, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1426), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ12650MF_03106414, 1, (STRLEN(?targetMotifMatchCigarQ12650MF_03106414) - STRLEN(REPLACE(?targetMotifMatchCigarQ12650MF_03106414, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1426), '}'), '')))), '[^-]', ''))) AS ?step2427) .
BIND(((?step2427 + ?targetMotifMatchRegionMatchBeginPositionMF_03106415) - 1) AS ?thisPositionOn134) .
BIND(?this AS ?pfs3t428) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn133))) AS ?pfsb130) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn134))) AS ?pfse131) .
FILTER (REGEX('[IT]A', SUBSTR(?thisSequenceValue, ?thisPositionOn133, (?thisPositionOn134 - ?thisPositionOn133)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03106a129')) AS ?annotation129) .
BIND(?this AS ?pfs128) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch433 faldo:location ?templateMotifSequenceMatchRegionQ12650434 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ12650436 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ12650MF_03106429 .
?templateMotifSequenceMatchRegionQ12650434 faldo:begin ?templateMotifSequenceMatchBeginQ12650435 .
?templateMotifSequenceMatchBeginQ12650435 faldo:position ?templateMotifSequenceMatchBeginPositionQ12650430 ;
faldo:reference isoform:Q12650-1 .
?templateMotifSequenceProfileAlignmentOperationQ12650436 edam:has_input signature:MF_03106 ;
rdf:type edam:operation_0300 .
?targetMotifMatch437 faldo:location ?targetMotifMatchRegionMatch438 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03106440 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ12650MF_03106431 .
?targetMotifMatchRegionMatch438 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03106439 .
?targetMotifMatchRegionMatchBeginMF_03106439 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03106432 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03106440 edam:has_input signature:MF_03106 ;
rdf:type edam:operation_0300 .
?this rdfs:seeAlso .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ12650MF_03106429, 1, (STRLEN(?templateMotifCigarQ12650MF_03106429) - STRLEN(REPLACE(?templateMotifCigarQ12650MF_03106429, CONCAT('^(?:-*[^-]){', STR(((450 - ?templateMotifSequenceMatchBeginPositionQ12650430) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1441) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ12650MF_03106431, 1, (STRLEN(?targetMotifMatchCigarQ12650MF_03106431) - STRLEN(REPLACE(?targetMotifMatchCigarQ12650MF_03106431, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1441), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ12650MF_03106431, 1, (STRLEN(?targetMotifMatchCigarQ12650MF_03106431) - STRLEN(REPLACE(?targetMotifMatchCigarQ12650MF_03106431, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1441), '}'), '')))), '[^-]', ''))) AS ?step2442) .
BIND(((?step2442 + ?targetMotifMatchRegionMatchBeginPositionMF_03106432) - 1) AS ?thisPositionOn140) .
BIND(?thisPositionOn140 AS ?thisPositionOn141) .
BIND(?this AS ?pfs3t443) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn140))) AS ?pfsb137) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn141))) AS ?pfse138) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn140, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_03106a136')) AS ?annotation136) .
BIND(?this AS ?pfs135) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch448 faldo:location ?templateMotifSequenceMatchRegionQ12650449 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ12650451 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ12650MF_03106444 .
?templateMotifSequenceMatchRegionQ12650449 faldo:begin ?templateMotifSequenceMatchBeginQ12650450 .
?templateMotifSequenceMatchBeginQ12650450 faldo:position ?templateMotifSequenceMatchBeginPositionQ12650445 ;
faldo:reference isoform:Q12650-1 .
?templateMotifSequenceProfileAlignmentOperationQ12650451 edam:has_input signature:MF_03106 ;
rdf:type edam:operation_0300 .
?targetMotifMatch452 faldo:location ?targetMotifMatchRegionMatch453 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03106455 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ12650MF_03106446 .
?targetMotifMatchRegionMatch453 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03106454 .
?targetMotifMatchRegionMatchBeginMF_03106454 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03106447 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03106455 edam:has_input signature:MF_03106 ;
rdf:type edam:operation_0300 .
?this rdfs:seeAlso .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ12650MF_03106444, 1, (STRLEN(?templateMotifCigarQ12650MF_03106444) - STRLEN(REPLACE(?templateMotifCigarQ12650MF_03106444, CONCAT('^(?:-*[^-]){', STR(((514 - ?templateMotifSequenceMatchBeginPositionQ12650445) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1456) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ12650MF_03106446, 1, (STRLEN(?targetMotifMatchCigarQ12650MF_03106446) - STRLEN(REPLACE(?targetMotifMatchCigarQ12650MF_03106446, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1456), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ12650MF_03106446, 1, (STRLEN(?targetMotifMatchCigarQ12650MF_03106446) - STRLEN(REPLACE(?targetMotifMatchCigarQ12650MF_03106446, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1456), '}'), '')))), '[^-]', ''))) AS ?step2457) .
BIND(((?step2457 + ?targetMotifMatchRegionMatchBeginPositionMF_03106447) - 1) AS ?thisPositionOn147) .
BIND(?thisPositionOn147 AS ?thisPositionOn148) .
BIND(?this AS ?pfs3t458) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn147))) AS ?pfsb144) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn148))) AS ?pfse145) .
FILTER (REGEX('[RK]', SUBSTR(?thisSequenceValue, ?thisPositionOn147, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_03106a143')) AS ?annotation143) .
BIND(?this AS ?pfs142) .
}
OPTIONAL {
?this a up:Protein .
?this rdfs:seeAlso .
BIND(?this AS ?case8) .
}
OPTIONAL {
?this a up:Protein .
FILTER (! (EXISTS {
?this rdfs:seeAlso .
})) .
BIND(?this AS ?case9) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:4930 .
BIND(?this AS ?case10) .
BIND(URI(CONCAT(STR(?this), '#MF_03106a11')) AS ?name11) .
BIND(URI(CONCAT(STR(?this), '#MF_03106a12')) AS ?name12) .
BIND(URI(CONCAT(STR(?this), '#MF_03106a13')) AS ?name13) .
BIND(URI(CONCAT(STR(?this), '#MF_03106a14')) AS ?name14) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:4930 .
})) .
BIND(?this AS ?case15) .
BIND(URI(CONCAT(STR(?this), '#MF_03106a16')) AS ?name16) .
BIND(URI(CONCAT(STR(?this), '#MF_03106a17')) AS ?name17) .
BIND(URI(CONCAT(STR(?this), '#MF_03106a18')) AS ?name18) .
}
}
"xsd:string |
