| http://purl.uniprot.org/unirules/MF_04081#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:936825 up:source unirule:MF_04081 .
_:936826 up:source unirule:MF_04081 .
_:936827 up:fullName 'p17' ;
rdf:type up:Structured_Name .
_:936828 up:source unirule:MF_04081 .
_:936829 up:fullName 'p7' ;
rdf:type up:Structured_Name .
_:936830 up:source unirule:MF_04081 .
_:936831 up:source unirule:MF_04081 .
_:936832 up:source unirule:MF_04081 .
_:936833 up:source unirule:MF_04081 .
_:936834 up:source unirule:MF_04081 .
_:936835 up:source unirule:MF_04081 .
_:936836 up:source unirule:MF_04081 .
_:936837 up:source unirule:MF_04081 .
_:936838 up:source unirule:MF_04081 .
_:936839 up:source unirule:MF_04081 .
_:936840 up:source unirule:MF_04081 .
_:936841 up:source unirule:MF_04081 .
_:936842 up:source unirule:MF_04081 .
_:936843 up:source unirule:MF_04081 .
_:936844 up:source unirule:MF_04081 .
_:936845 up:source unirule:MF_04081 .
_:936846 up:source unirule:MF_04081 .
_:936847 up:source unirule:MF_04081 .
_:936848 up:source unirule:MF_04081 .
_:936849 up:source unirule:MF_04081 .
_:936850 up:source unirule:MF_04081 .
_:936851 up:source unirule:MF_04081 .
_:936852 up:source unirule:MF_04081 .
_:936853 up:source unirule:MF_04081 .
_:936854 up:source unirule:MF_04081 .
_:936855 up:source unirule:MF_04081 .
_:936856 up:source unirule:MF_04081 .
_:936857 up:source unirule:MF_04081 .
_:936858 up:source unirule:MF_04081 .
_:936859 up:source unirule:MF_04081 .
_:936860 up:source unirule:MF_04081 .
_:936861 up:source unirule:MF_04081 .
_:936862 up:source unirule:MF_04081 .
_:936863 up:source unirule:MF_04081 .
_:936864 up:source unirule:MF_04081 .
_:936865 up:source unirule:MF_04081 .
_:936866 up:source unirule:MF_04081 .
_:936867 up:source unirule:MF_04081 .
_:936868 up:source unirule:MF_04081 .
_:936869 up:source unirule:MF_04081 .
_:936870 up:source unirule:MF_04081 .
_:936871 up:source unirule:MF_04081 .
_:936872 up:source unirule:MF_04081 .
_:936873 up:source unirule:MF_04081 .
_:936874 up:source unirule:MF_04081 .
_:936875 up:source unirule:MF_04081 .
_:936876 up:source unirule:MF_04081 .
_:936877 up:source unirule:MF_04081 .
_:936878 up:source unirule:MF_04081 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation5 ,
?annotation6 ,
?annotation7 ,
?annotation11 ,
?annotation12 ,
?annotation13 ,
?annotation14 ,
?annotation15 ,
?annotation16 ,
?annotation17 ,
?annotation18 ,
?annotation19 ,
?annotation20 ;
up:classifiedWith GO:0003723 ,
GO:0005654 ,
GO:0016020 ,
GO:0020002 ,
GO:0030430 ,
GO:0044423 ,
keyword:1032 ,
keyword:1035 ,
keyword:1043 ,
keyword:472 ,
keyword:597 ,
keyword:694 ,
keyword:832 ,
keyword:833 ,
keyword:945 ,
keyword:946 ;
up:component ?namedpart2 ,
?namedpart3 ;
up:recommendedName ?name0 .
?name0 up:fullName 'Virion infectivity factor' ;
up:shortName 'Vif' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'SOR protein' ;
rdf:type up:Structured_Name .
?namedpart2 up:recommendedName _:936827 .
?namedpart3 up:recommendedName _:936829 .
?gene4 skos:prefLabel 'vif' .
?annotation5 a up:Function_Annotation ;
rdfs:comment 'Counteracts the innate antiviral activity of host APOBEC3F and APOBEC3G. Forms a complex with host APOBEC3F and APOBEC3G thus preventing the entry of these lethally hypermutating enzymes into progeny virions. Recruits an active E3 ubiquitin ligase complex composed of elongin BC, CUL5, and RBX2 to induce polyubiquitination of APOBEC3G and APOBEC3F. In turn, they are directed to the 26S proteasome for degradation. Vif interaction with APOBEC3G also blocks its cytidine deaminase activity in a proteasome-independent manner, suggesting a dual inhibitory mechanism. May interact directly with APOBEC3G mRNA in order to inhibit its translation. Seems to play a role in viral morphology by affecting the stability of the viral nucleoprotein core. Finally, Vif also contributes to the G2 cell cycle arrest observed in HIV infected cells.' .
?annotation6 a up:Subunit_Annotation ;
rdfs:comment 'Homomultimer; in vitro and presumably in vivo. Interacts with viral RNA and Pr55Gag precursor; these interactions mediate Vif incorporation into the virion. Interacts with the viral reverse transcriptase. Interacts with human APOBEC3F and APOBEC3G. Interacts with host UBCE7IP1 isoform 3/ZIN and possibly with SAT. Interacts with host tyrosine kinases HCK and FYN; these interactions may decrease level of phosphorylated APOBEC3G incorporation into virions. Interacts with host ABCE1; this interaction may play a role in protecting viral RNA from damage during viral assembly. Forms an E3 ligase complex by interacting with host CUL5 and elongin BC complex (ELOB and ELOC). Interacts with host MDM2; this interaction targets Vif for degradation by the proteasome.' .
?annotation7 a up:Subcellular_Location_Annotation ;
rdfs:comment 'In the cytoplasm, seems to colocalize with intermediate filament vimentin. A fraction is associated with the cytoplasmic side of cellular membranes, presumably via the interaction with Pr55Gag precursor. Incorporated in virions at a ratio of approximately 7 to 20 molecules per virion' .
?annotation7li8 up:cellularComponent .
?annotation7li9 up:cellularComponent ;
up:orientation ;
up:topology .
?annotation7li10 up:cellularComponent .
?annotation11 a up:Induction_Annotation ;
rdfs:comment 'Expressed late during infection in a Rev-dependent manner.' .
?annotation12 a up:Domain_Annotation ;
rdfs:comment 'The BC-like-box motif mediates the interaction with elongin BC complex.' .
?annotation13 a up:Domain_Annotation ;
rdfs:comment 'The HCCH motif (H-x(5)-C-x(18)-C-x(5)-H) mediates the interaction with CUL5.' .
?annotation14 a up:PTM_Annotation ;
rdfs:comment 'Processed in virion by the viral protease.' .
?annotation15 a up:PTM_Annotation ;
rdfs:comment 'Highly phosphorylated on serine and threonine residues.' .
?annotation16 a up:PTM_Annotation ;
rdfs:comment 'Polyubiquitinated and degraded by the proteasome in the presence of APOBEC3G.' .
?annotation17 a up:Annotation ;
rdfs:comment "Required for replication in 'nonpermissive' cells, including primary T-cells, macrophages and certain T-cell lines, but is dispensable for replication in 'permissive' cell lines, such as 293T cells. In nonpermissive cells, Vif-defective viruses can produce virions, but they fail to complete reverse transcription and cannot successfully infect new cells." .
?annotation18 a up:Annotation ;
rdfs:comment 'Vif-defective viruses show catastrophic failure in reverse transcription due to APOBEC-induced mutations that initiate a DNA base repair pathway and compromise the structural integrity of the ssDNA. In the absence of Vif, the virion is morphologically abnormal.' .
?annotation19 a up:Annotation ;
rdfs:comment 'HIV-1 lineages are divided in three main groups, M (for Major), O (for Outlier), and N (for New, or Non-M, Non-O). The vast majority of strains found worldwide belong to the group M. Group O seems to be endemic to and largely confined to Cameroon and neighboring countries in West Central Africa, where these viruses represent a small minority of HIV-1 strains. The group N is represented by a limited number of isolates from Cameroonian persons. The group M is further subdivided in 9 clades or subtypes (A to D, F to H, J and K).' .
?annotation20 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the primate lentivirus group Vif protein family.' .
?pfs21 up:annotation ?annotation22 .
?annotation22 faldo:begin ?pfsb23 ;
faldo:end ?pfse24 ;
rdf:type up:Chain_Annotation ;
rdfs:comment 'Virion infectivity factor' .
?pfsb23 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?pfse24 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?pfs27 up:annotation ?annotation28 .
?annotation28 faldo:begin ?pfsb29 ;
faldo:end ?pfse30 ;
rdf:type up:Chain_Annotation ;
rdfs:comment 'p17' .
?pfsb29 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?pfse30 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?pfs33 up:annotation ?annotation34 .
?annotation34 faldo:begin ?pfsb35 ;
faldo:end ?pfse36 ;
rdf:type up:Chain_Annotation ;
rdfs:comment 'p7' .
?pfsb35 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?pfse36 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?pfs39 up:annotation ?annotation40 .
?annotation40 faldo:begin ?pfsb41 ;
faldo:end ?pfse42 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Interaction with host APOBEC3F; F1-box' .
?pfsb41 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?pfse42 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?pfs45 up:annotation ?annotation46 .
?annotation46 faldo:begin ?pfsb47 ;
faldo:end ?pfse48 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Interaction with host APOBEC3G; G-box' .
?pfsb47 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?pfse48 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?pfs51 up:annotation ?annotation52 .
?annotation52 faldo:begin ?pfsb53 ;
faldo:end ?pfse54 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Interaction with host APOBEC3F and APOBEC3G; FG-box' .
?pfsb53 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
?pfse54 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?pfs57 up:annotation ?annotation58 .
?annotation58 faldo:begin ?pfsb59 ;
faldo:end ?pfse60 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Interaction with host APOBEC3F; F2-box' .
?pfsb59 faldo:position ?thisPositionOn61 ;
rdf:type faldo:ExactPosition .
?pfse60 faldo:position ?thisPositionOn62 ;
rdf:type faldo:ExactPosition .
?pfs63 up:annotation ?annotation64 .
?annotation64 faldo:begin ?pfsb65 ;
faldo:end ?pfse66 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'RNA-binding' .
?pfsb65 faldo:position ?thisPositionOn67 ;
rdf:type faldo:ExactPosition .
?pfse66 faldo:position ?thisPositionOn68 ;
rdf:type faldo:ExactPosition .
?pfs69 up:annotation ?annotation70 .
?annotation70 faldo:begin ?pfsb71 ;
faldo:end ?pfse72 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Multimerization' .
?pfsb71 faldo:position ?thisPositionOn73 ;
rdf:type faldo:ExactPosition .
?pfse72 faldo:position ?thisPositionOn74 ;
rdf:type faldo:ExactPosition .
?pfs75 up:annotation ?annotation76 .
?annotation76 faldo:begin ?pfsb77 ;
faldo:end ?pfse78 ;
rdf:type up:Motif_Annotation ;
rdfs:comment 'HCCH motif' .
?pfsb77 faldo:position ?thisPositionOn79 ;
rdf:type faldo:ExactPosition .
?pfse78 faldo:position ?thisPositionOn80 ;
rdf:type faldo:ExactPosition .
?pfs81 up:annotation ?annotation82 .
?annotation82 faldo:begin ?pfsb83 ;
faldo:end ?pfse84 ;
rdf:type up:Motif_Annotation ;
rdfs:comment 'BC-box-like motif' .
?pfsb83 faldo:position ?thisPositionOn85 ;
rdf:type faldo:ExactPosition .
?pfse84 faldo:position ?thisPositionOn86 ;
rdf:type faldo:ExactPosition .
?pfs87 up:annotation ?annotation88 .
?annotation88 faldo:begin ?pfsb89 ;
faldo:end ?pfse90 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Cleavage in virion (by viral protease)' .
?pfsb89 faldo:position ?thisPositionOn91 ;
rdf:type faldo:ExactPosition .
?pfse90 faldo:position ?thisPositionOn92 ;
rdf:type faldo:ExactPosition .
?pfs93 up:annotation ?annotation94 .
?annotation94 faldo:begin ?pfsb95 ;
faldo:end ?pfse96 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Membrane association' .
?pfsb95 faldo:position ?thisPositionOn97 ;
rdf:type faldo:ExactPosition .
?pfse96 faldo:position ?thisPositionOn98 ;
rdf:type faldo:ExactPosition .
?pfs99 up:annotation ?annotation100 .
?annotation100 faldo:begin ?pfsb101 ;
faldo:end ?pfse102 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Phosphothreonine; by host MAP4K1' .
?pfsb101 faldo:position ?thisPositionOn103 ;
rdf:type faldo:ExactPosition .
?pfse102 faldo:position ?thisPositionOn104 ;
rdf:type faldo:ExactPosition .
?pfs105 up:annotation ?annotation106 .
?annotation106 faldo:begin ?pfsb107 ;
faldo:end ?pfse108 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Phosphoserine; by host' .
?pfsb107 faldo:position ?thisPositionOn109 ;
rdf:type faldo:ExactPosition .
?pfse108 faldo:position ?thisPositionOn110 ;
rdf:type faldo:ExactPosition .
?pfs111 up:annotation ?annotation112 .
?annotation112 faldo:begin ?pfsb113 ;
faldo:end ?pfse114 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Phosphothreonine; by host' .
?pfsb113 faldo:position ?thisPositionOn115 ;
rdf:type faldo:ExactPosition .
?pfse114 faldo:position ?thisPositionOn116 ;
rdf:type faldo:ExactPosition .
?pfs117 up:annotation ?annotation118 .
?annotation118 faldo:begin ?pfsb119 ;
faldo:end ?pfse120 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Phosphoserine; by host MAP4K1' .
?pfsb119 faldo:position ?thisPositionOn121 ;
rdf:type faldo:ExactPosition .
?pfse120 faldo:position ?thisPositionOn122 ;
rdf:type faldo:ExactPosition .
?pfs123 up:annotation ?annotation124 .
?annotation124 faldo:begin ?pfsb125 ;
faldo:end ?pfse126 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Phosphothreonine; by host' .
?pfsb125 faldo:position ?thisPositionOn127 ;
rdf:type faldo:ExactPosition .
?pfse126 faldo:position ?thisPositionOn128 ;
rdf:type faldo:ExactPosition .
_:936879 a rdf:Statement ;
up:attribution _:936825 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:936880 a rdf:Statement ;
up:attribution _:936826 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:936881 a rdf:Statement ;
up:attribution _:936828 ;
rdf:subject ?this ;
rdf:predicate up:component ;
rdf:object ?namedpart2 .
_:936882 a rdf:Statement ;
up:attribution _:936830 ;
rdf:subject ?this ;
rdf:predicate up:component ;
rdf:object ?namedpart3 .
_:936883 a rdf:Statement ;
up:attribution _:936831 ;
rdf:subject ?gene4 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene4 .
_:936884 a rdf:Statement ;
up:attribution _:936832 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:936885 a rdf:Statement ;
up:attribution _:936833 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:936886 a rdf:Statement ;
up:attribution _:936834 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:936887 a rdf:Statement ;
up:attribution _:936835 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:936888 a rdf:Statement ;
up:attribution _:936836 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:936889 a rdf:Statement ;
up:attribution _:936837 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:936890 a rdf:Statement ;
up:attribution _:936838 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:936891 a rdf:Statement ;
up:attribution _:936839 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:936892 a rdf:Statement ;
up:attribution _:936840 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:936893 a rdf:Statement ;
up:attribution _:936841 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:936894 a rdf:Statement ;
up:attribution _:936842 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:936895 a rdf:Statement ;
up:attribution _:936843 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:936896 a rdf:Statement ;
up:attribution _:936844 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:936897 a rdf:Statement ;
up:attribution _:936845 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1032 .
_:936898 a rdf:Statement ;
up:attribution _:936846 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1035 .
_:936899 a rdf:Statement ;
up:attribution _:936847 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1043 .
_:936900 a rdf:Statement ;
up:attribution _:936848 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:945 .
_:936901 a rdf:Statement ;
up:attribution _:936849 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:936902 a rdf:Statement ;
up:attribution _:936850 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:597 .
_:936903 a rdf:Statement ;
up:attribution _:936851 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:694 .
_:936904 a rdf:Statement ;
up:attribution _:936852 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:832 .
_:936905 a rdf:Statement ;
up:attribution _:936853 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:833 .
_:936906 a rdf:Statement ;
up:attribution _:936854 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:946 .
_:936907 a rdf:Statement ;
up:attribution _:936855 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0030430 .
_:936908 a rdf:Statement ;
up:attribution _:936856 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0020002 .
_:936909 a rdf:Statement ;
up:attribution _:936857 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016020 .
_:936910 a rdf:Statement ;
up:attribution _:936858 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005654 .
_:936911 a rdf:Statement ;
up:attribution _:936859 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0044423 .
_:936912 a rdf:Statement ;
up:attribution _:936860 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003723 .
_:936913 a rdf:Statement ;
up:source unirule:MF_04081 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:936914 a rdf:Statement ;
up:attribution _:936861 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:936915 a rdf:Statement ;
up:source unirule:MF_04081 ;
rdf:subject ?pfs27 ;
rdf:predicate up:annotation ;
rdf:object ?annotation28 .
_:936916 a rdf:Statement ;
up:attribution _:936862 ;
rdf:subject ?pfs27 ;
rdf:predicate up:annotation ;
rdf:object ?annotation28 .
_:936917 a rdf:Statement ;
up:source unirule:MF_04081 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:936918 a rdf:Statement ;
up:attribution _:936863 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:936919 a rdf:Statement ;
up:source unirule:MF_04081 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:936920 a rdf:Statement ;
up:attribution _:936864 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:936921 a rdf:Statement ;
up:source unirule:MF_04081 ;
rdf:subject ?pfs45 ;
rdf:predicate up:annotation ;
rdf:object ?annotation46 .
_:936922 a rdf:Statement ;
up:attribution _:936865 ;
rdf:subject ?pfs45 ;
rdf:predicate up:annotation ;
rdf:object ?annotation46 .
_:936923 a rdf:Statement ;
up:source unirule:MF_04081 ;
rdf:subject ?pfs51 ;
rdf:predicate up:annotation ;
rdf:object ?annotation52 .
_:936924 a rdf:Statement ;
up:attribution _:936866 ;
rdf:subject ?pfs51 ;
rdf:predicate up:annotation ;
rdf:object ?annotation52 .
_:936925 a rdf:Statement ;
up:source unirule:MF_04081 ;
rdf:subject ?pfs57 ;
rdf:predicate up:annotation ;
rdf:object ?annotation58 .
_:936926 a rdf:Statement ;
up:attribution _:936867 ;
rdf:subject ?pfs57 ;
rdf:predicate up:annotation ;
rdf:object ?annotation58 .
_:936927 a rdf:Statement ;
up:source unirule:MF_04081 ;
rdf:subject ?pfs63 ;
rdf:predicate up:annotation ;
rdf:object ?annotation64 .
_:936928 a rdf:Statement ;
up:attribution _:936868 ;
rdf:subject ?pfs63 ;
rdf:predicate up:annotation ;
rdf:object ?annotation64 .
_:936929 a rdf:Statement ;
up:source unirule:MF_04081 ;
rdf:subject ?pfs69 ;
rdf:predicate up:annotation ;
rdf:object ?annotation70 .
_:936930 a rdf:Statement ;
up:attribution _:936869 ;
rdf:subject ?pfs69 ;
rdf:predicate up:annotation ;
rdf:object ?annotation70 .
_:936931 a rdf:Statement ;
up:source unirule:MF_04081 ;
rdf:subject ?pfs75 ;
rdf:predicate up:annotation ;
rdf:object ?annotation76 .
_:936932 a rdf:Statement ;
up:attribution _:936870 ;
rdf:subject ?pfs75 ;
rdf:predicate up:annotation ;
rdf:object ?annotation76 .
_:936933 a rdf:Statement ;
up:source unirule:MF_04081 ;
rdf:subject ?pfs81 ;
rdf:predicate up:annotation ;
rdf:object ?annotation82 .
_:936934 a rdf:Statement ;
up:attribution _:936871 ;
rdf:subject ?pfs81 ;
rdf:predicate up:annotation ;
rdf:object ?annotation82 .
_:936935 a rdf:Statement ;
up:source unirule:MF_04081 ;
rdf:subject ?pfs87 ;
rdf:predicate up:annotation ;
rdf:object ?annotation88 .
_:936936 a rdf:Statement ;
up:attribution _:936872 ;
rdf:subject ?pfs87 ;
rdf:predicate up:annotation ;
rdf:object ?annotation88 .
_:936937 a rdf:Statement ;
up:source unirule:MF_04081 ;
rdf:subject ?pfs93 ;
rdf:predicate up:annotation ;
rdf:object ?annotation94 .
_:936938 a rdf:Statement ;
up:attribution _:936873 ;
rdf:subject ?pfs93 ;
rdf:predicate up:annotation ;
rdf:object ?annotation94 .
_:936939 a rdf:Statement ;
up:source unirule:MF_04081 ;
rdf:subject ?pfs99 ;
rdf:predicate up:annotation ;
rdf:object ?annotation100 .
_:936940 a rdf:Statement ;
up:attribution _:936874 ;
rdf:subject ?pfs99 ;
rdf:predicate up:annotation ;
rdf:object ?annotation100 .
_:936941 a rdf:Statement ;
up:source unirule:MF_04081 ;
rdf:subject ?pfs105 ;
rdf:predicate up:annotation ;
rdf:object ?annotation106 .
_:936942 a rdf:Statement ;
up:attribution _:936875 ;
rdf:subject ?pfs105 ;
rdf:predicate up:annotation ;
rdf:object ?annotation106 .
_:936943 a rdf:Statement ;
up:source unirule:MF_04081 ;
rdf:subject ?pfs111 ;
rdf:predicate up:annotation ;
rdf:object ?annotation112 .
_:936944 a rdf:Statement ;
up:attribution _:936876 ;
rdf:subject ?pfs111 ;
rdf:predicate up:annotation ;
rdf:object ?annotation112 .
_:936945 a rdf:Statement ;
up:source unirule:MF_04081 ;
rdf:subject ?pfs117 ;
rdf:predicate up:annotation ;
rdf:object ?annotation118 .
_:936946 a rdf:Statement ;
up:attribution _:936877 ;
rdf:subject ?pfs117 ;
rdf:predicate up:annotation ;
rdf:object ?annotation118 .
_:936947 a rdf:Statement ;
up:source unirule:MF_04081 ;
rdf:subject ?pfs123 ;
rdf:predicate up:annotation ;
rdf:object ?annotation124 .
_:936948 a rdf:Statement ;
up:attribution _:936878 ;
rdf:subject ?pfs123 ;
rdf:predicate up:annotation ;
rdf:object ?annotation124 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_04081
#Rule MF_04081 Created by:? on:2017-06-01 Modified by:Catherine Rivoire on:2021-06-04
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_04081 .
?thisOrganism rdfs:subClassOf+ taxon:11646 .
BIND(URI(CONCAT(STR(?this), '#MF_04081a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_04081a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_04081a2')) AS ?namedpart2) .
BIND(URI(CONCAT(STR(?this), '#MF_04081a3')) AS ?namedpart3) .
BIND(URI(CONCAT(STR(?this), '#MF_04081a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_04081a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_04081a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_04081a11')) AS ?annotation11) .
BIND(URI(CONCAT(STR(?this), '#MF_04081a12')) AS ?annotation12) .
BIND(URI(CONCAT(STR(?this), '#MF_04081a13')) AS ?annotation13) .
BIND(URI(CONCAT(STR(?this), '#MF_04081a14')) AS ?annotation14) .
BIND(URI(CONCAT(STR(?this), '#MF_04081a15')) AS ?annotation15) .
BIND(URI(CONCAT(STR(?this), '#MF_04081a16')) AS ?annotation16) .
BIND(URI(CONCAT(STR(?this), '#MF_04081a17')) AS ?annotation17) .
BIND(URI(CONCAT(STR(?this), '#MF_04081a18')) AS ?annotation18) .
BIND(URI(CONCAT(STR(?this), '#MF_04081a19')) AS ?annotation19) .
BIND(URI(CONCAT(STR(?this), '#MF_04081a20')) AS ?annotation20) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch133 faldo:location ?templateMotifSequenceMatchRegionP69723134 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP69723136 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP69723MF_04081129 .
?templateMotifSequenceMatchRegionP69723134 faldo:begin ?templateMotifSequenceMatchBeginP69723135 .
?templateMotifSequenceMatchBeginP69723135 faldo:position ?templateMotifSequenceMatchBeginPositionP69723130 ;
faldo:reference isoform:P69723-1 .
?templateMotifSequenceProfileAlignmentOperationP69723136 edam:has_input signature:MF_04081 ;
rdf:type edam:operation_0300 .
?targetMotifMatch137 faldo:location ?targetMotifMatchRegionMatch138 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04081140 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP69723MF_04081131 .
?targetMotifMatchRegionMatch138 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04081139 .
?targetMotifMatchRegionMatchBeginMF_04081139 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04081132 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04081140 edam:has_input signature:MF_04081 ;
rdf:type edam:operation_0300 .
BIND(1 AS ?thisPositionOn25) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn26) .
BIND(?this AS ?pfs1t141) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfsb23) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfse24) .
FILTER ((BOUND(?thisPositionOn25) && BOUND(?thisPositionOn26))) .
BIND(URI(CONCAT(STR(?this), '#MF_04081a22')) AS ?annotation22) .
BIND(?this AS ?pfs21) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch146 faldo:location ?templateMotifSequenceMatchRegionP69723147 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP69723149 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP69723MF_04081142 .
?templateMotifSequenceMatchRegionP69723147 faldo:begin ?templateMotifSequenceMatchBeginP69723148 .
?templateMotifSequenceMatchBeginP69723148 faldo:position ?templateMotifSequenceMatchBeginPositionP69723143 ;
faldo:reference isoform:P69723-1 .
?templateMotifSequenceProfileAlignmentOperationP69723149 edam:has_input signature:MF_04081 ;
rdf:type edam:operation_0300 .
?targetMotifMatch150 faldo:location ?targetMotifMatchRegionMatch151 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04081153 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP69723MF_04081144 .
?targetMotifMatchRegionMatch151 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04081152 .
?targetMotifMatchRegionMatchBeginMF_04081152 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04081145 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04081153 edam:has_input signature:MF_04081 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69723MF_04081142, 1, (STRLEN(?templateMotifCigarP69723MF_04081142) - STRLEN(REPLACE(?templateMotifCigarP69723MF_04081142, CONCAT('^(?:-*[^-]){', STR(((1 - ?templateMotifSequenceMatchBeginPositionP69723143) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1154) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69723MF_04081144, 1, (STRLEN(?targetMotifMatchCigarP69723MF_04081144) - STRLEN(REPLACE(?targetMotifMatchCigarP69723MF_04081144, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1154), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69723MF_04081144, 1, (STRLEN(?targetMotifMatchCigarP69723MF_04081144) - STRLEN(REPLACE(?targetMotifMatchCigarP69723MF_04081144, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1154), '}'), '')))), '[^-]', ''))) AS ?step2155) .
BIND(((?step2155 + ?targetMotifMatchRegionMatchBeginPositionMF_04081145) - 1) AS ?thisPositionOn31) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69723MF_04081142, 1, (STRLEN(?templateMotifCigarP69723MF_04081142) - STRLEN(REPLACE(?templateMotifCigarP69723MF_04081142, CONCAT('^(?:-*[^-]){', STR(((150 - ?templateMotifSequenceMatchBeginPositionP69723143) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1156) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69723MF_04081144, 1, (STRLEN(?targetMotifMatchCigarP69723MF_04081144) - STRLEN(REPLACE(?targetMotifMatchCigarP69723MF_04081144, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1156), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69723MF_04081144, 1, (STRLEN(?targetMotifMatchCigarP69723MF_04081144) - STRLEN(REPLACE(?targetMotifMatchCigarP69723MF_04081144, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1156), '}'), '')))), '[^-]', ''))) AS ?step2157) .
BIND(((?step2157 + ?targetMotifMatchRegionMatchBeginPositionMF_04081145) - 1) AS ?thisPositionOn32) .
BIND(?this AS ?pfs1t158) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb29) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse30) .
FILTER ((BOUND(?thisPositionOn31) && BOUND(?thisPositionOn32))) .
BIND(URI(CONCAT(STR(?this), '#MF_04081a28')) AS ?annotation28) .
BIND(?this AS ?pfs27) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch163 faldo:location ?templateMotifSequenceMatchRegionP69723164 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP69723166 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP69723MF_04081159 .
?templateMotifSequenceMatchRegionP69723164 faldo:begin ?templateMotifSequenceMatchBeginP69723165 .
?templateMotifSequenceMatchBeginP69723165 faldo:position ?templateMotifSequenceMatchBeginPositionP69723160 ;
faldo:reference isoform:P69723-1 .
?templateMotifSequenceProfileAlignmentOperationP69723166 edam:has_input signature:MF_04081 ;
rdf:type edam:operation_0300 .
?targetMotifMatch167 faldo:location ?targetMotifMatchRegionMatch168 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04081170 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP69723MF_04081161 .
?targetMotifMatchRegionMatch168 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04081169 .
?targetMotifMatchRegionMatchBeginMF_04081169 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04081162 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04081170 edam:has_input signature:MF_04081 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69723MF_04081159, 1, (STRLEN(?templateMotifCigarP69723MF_04081159) - STRLEN(REPLACE(?templateMotifCigarP69723MF_04081159, CONCAT('^(?:-*[^-]){', STR(((151 - ?templateMotifSequenceMatchBeginPositionP69723160) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1171) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69723MF_04081161, 1, (STRLEN(?targetMotifMatchCigarP69723MF_04081161) - STRLEN(REPLACE(?targetMotifMatchCigarP69723MF_04081161, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1171), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69723MF_04081161, 1, (STRLEN(?targetMotifMatchCigarP69723MF_04081161) - STRLEN(REPLACE(?targetMotifMatchCigarP69723MF_04081161, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1171), '}'), '')))), '[^-]', ''))) AS ?step2172) .
BIND(((?step2172 + ?targetMotifMatchRegionMatchBeginPositionMF_04081162) - 1) AS ?thisPositionOn37) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69723MF_04081159, 1, (STRLEN(?templateMotifCigarP69723MF_04081159) - STRLEN(REPLACE(?templateMotifCigarP69723MF_04081159, CONCAT('^(?:-*[^-]){', STR(((192 - ?templateMotifSequenceMatchBeginPositionP69723160) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1173) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69723MF_04081161, 1, (STRLEN(?targetMotifMatchCigarP69723MF_04081161) - STRLEN(REPLACE(?targetMotifMatchCigarP69723MF_04081161, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1173), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69723MF_04081161, 1, (STRLEN(?targetMotifMatchCigarP69723MF_04081161) - STRLEN(REPLACE(?targetMotifMatchCigarP69723MF_04081161, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1173), '}'), '')))), '[^-]', ''))) AS ?step2174) .
BIND(((?step2174 + ?targetMotifMatchRegionMatchBeginPositionMF_04081162) - 1) AS ?thisPositionOn38) .
BIND(?this AS ?pfs1t175) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfsb35) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfse36) .
FILTER ((BOUND(?thisPositionOn37) && BOUND(?thisPositionOn38))) .
BIND(URI(CONCAT(STR(?this), '#MF_04081a34')) AS ?annotation34) .
BIND(?this AS ?pfs33) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch180 faldo:location ?templateMotifSequenceMatchRegionP69723181 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP69723183 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP69723MF_04081176 .
?templateMotifSequenceMatchRegionP69723181 faldo:begin ?templateMotifSequenceMatchBeginP69723182 .
?templateMotifSequenceMatchBeginP69723182 faldo:position ?templateMotifSequenceMatchBeginPositionP69723177 ;
faldo:reference isoform:P69723-1 .
?templateMotifSequenceProfileAlignmentOperationP69723183 edam:has_input signature:MF_04081 ;
rdf:type edam:operation_0300 .
?targetMotifMatch184 faldo:location ?targetMotifMatchRegionMatch185 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04081187 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP69723MF_04081178 .
?targetMotifMatchRegionMatch185 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04081186 .
?targetMotifMatchRegionMatchBeginMF_04081186 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04081179 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04081187 edam:has_input signature:MF_04081 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69723MF_04081176, 1, (STRLEN(?templateMotifCigarP69723MF_04081176) - STRLEN(REPLACE(?templateMotifCigarP69723MF_04081176, CONCAT('^(?:-*[^-]){', STR(((14 - ?templateMotifSequenceMatchBeginPositionP69723177) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1188) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69723MF_04081178, 1, (STRLEN(?targetMotifMatchCigarP69723MF_04081178) - STRLEN(REPLACE(?targetMotifMatchCigarP69723MF_04081178, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1188), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69723MF_04081178, 1, (STRLEN(?targetMotifMatchCigarP69723MF_04081178) - STRLEN(REPLACE(?targetMotifMatchCigarP69723MF_04081178, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1188), '}'), '')))), '[^-]', ''))) AS ?step2189) .
BIND(((?step2189 + ?targetMotifMatchRegionMatchBeginPositionMF_04081179) - 1) AS ?thisPositionOn43) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69723MF_04081176, 1, (STRLEN(?templateMotifCigarP69723MF_04081176) - STRLEN(REPLACE(?templateMotifCigarP69723MF_04081176, CONCAT('^(?:-*[^-]){', STR(((17 - ?templateMotifSequenceMatchBeginPositionP69723177) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1190) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69723MF_04081178, 1, (STRLEN(?targetMotifMatchCigarP69723MF_04081178) - STRLEN(REPLACE(?targetMotifMatchCigarP69723MF_04081178, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1190), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69723MF_04081178, 1, (STRLEN(?targetMotifMatchCigarP69723MF_04081178) - STRLEN(REPLACE(?targetMotifMatchCigarP69723MF_04081178, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1190), '}'), '')))), '[^-]', ''))) AS ?step2191) .
BIND(((?step2191 + ?targetMotifMatchRegionMatchBeginPositionMF_04081179) - 1) AS ?thisPositionOn44) .
BIND(?this AS ?pfs1t192) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfsb41) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfse42) .
FILTER ((BOUND(?thisPositionOn43) && BOUND(?thisPositionOn44))) .
BIND(URI(CONCAT(STR(?this), '#MF_04081a40')) AS ?annotation40) .
BIND(?this AS ?pfs39) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch197 faldo:location ?templateMotifSequenceMatchRegionP69723198 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP69723200 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP69723MF_04081193 .
?templateMotifSequenceMatchRegionP69723198 faldo:begin ?templateMotifSequenceMatchBeginP69723199 .
?templateMotifSequenceMatchBeginP69723199 faldo:position ?templateMotifSequenceMatchBeginPositionP69723194 ;
faldo:reference isoform:P69723-1 .
?templateMotifSequenceProfileAlignmentOperationP69723200 edam:has_input signature:MF_04081 ;
rdf:type edam:operation_0300 .
?targetMotifMatch201 faldo:location ?targetMotifMatchRegionMatch202 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04081204 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP69723MF_04081195 .
?targetMotifMatchRegionMatch202 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04081203 .
?targetMotifMatchRegionMatchBeginMF_04081203 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04081196 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04081204 edam:has_input signature:MF_04081 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69723MF_04081193, 1, (STRLEN(?templateMotifCigarP69723MF_04081193) - STRLEN(REPLACE(?templateMotifCigarP69723MF_04081193, CONCAT('^(?:-*[^-]){', STR(((40 - ?templateMotifSequenceMatchBeginPositionP69723194) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1205) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69723MF_04081195, 1, (STRLEN(?targetMotifMatchCigarP69723MF_04081195) - STRLEN(REPLACE(?targetMotifMatchCigarP69723MF_04081195, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1205), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69723MF_04081195, 1, (STRLEN(?targetMotifMatchCigarP69723MF_04081195) - STRLEN(REPLACE(?targetMotifMatchCigarP69723MF_04081195, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1205), '}'), '')))), '[^-]', ''))) AS ?step2206) .
BIND(((?step2206 + ?targetMotifMatchRegionMatchBeginPositionMF_04081196) - 1) AS ?thisPositionOn49) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69723MF_04081193, 1, (STRLEN(?templateMotifCigarP69723MF_04081193) - STRLEN(REPLACE(?templateMotifCigarP69723MF_04081193, CONCAT('^(?:-*[^-]){', STR(((44 - ?templateMotifSequenceMatchBeginPositionP69723194) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1207) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69723MF_04081195, 1, (STRLEN(?targetMotifMatchCigarP69723MF_04081195) - STRLEN(REPLACE(?targetMotifMatchCigarP69723MF_04081195, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1207), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69723MF_04081195, 1, (STRLEN(?targetMotifMatchCigarP69723MF_04081195) - STRLEN(REPLACE(?targetMotifMatchCigarP69723MF_04081195, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1207), '}'), '')))), '[^-]', ''))) AS ?step2208) .
BIND(((?step2208 + ?targetMotifMatchRegionMatchBeginPositionMF_04081196) - 1) AS ?thisPositionOn50) .
BIND(?this AS ?pfs1t209) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfsb47) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfse48) .
FILTER ((BOUND(?thisPositionOn49) && BOUND(?thisPositionOn50))) .
BIND(URI(CONCAT(STR(?this), '#MF_04081a46')) AS ?annotation46) .
BIND(?this AS ?pfs45) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch214 faldo:location ?templateMotifSequenceMatchRegionP69723215 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP69723217 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP69723MF_04081210 .
?templateMotifSequenceMatchRegionP69723215 faldo:begin ?templateMotifSequenceMatchBeginP69723216 .
?templateMotifSequenceMatchBeginP69723216 faldo:position ?templateMotifSequenceMatchBeginPositionP69723211 ;
faldo:reference isoform:P69723-1 .
?templateMotifSequenceProfileAlignmentOperationP69723217 edam:has_input signature:MF_04081 ;
rdf:type edam:operation_0300 .
?targetMotifMatch218 faldo:location ?targetMotifMatchRegionMatch219 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04081221 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP69723MF_04081212 .
?targetMotifMatchRegionMatch219 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04081220 .
?targetMotifMatchRegionMatchBeginMF_04081220 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04081213 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04081221 edam:has_input signature:MF_04081 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69723MF_04081210, 1, (STRLEN(?templateMotifCigarP69723MF_04081210) - STRLEN(REPLACE(?templateMotifCigarP69723MF_04081210, CONCAT('^(?:-*[^-]){', STR(((54 - ?templateMotifSequenceMatchBeginPositionP69723211) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1222) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69723MF_04081212, 1, (STRLEN(?targetMotifMatchCigarP69723MF_04081212) - STRLEN(REPLACE(?targetMotifMatchCigarP69723MF_04081212, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1222), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69723MF_04081212, 1, (STRLEN(?targetMotifMatchCigarP69723MF_04081212) - STRLEN(REPLACE(?targetMotifMatchCigarP69723MF_04081212, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1222), '}'), '')))), '[^-]', ''))) AS ?step2223) .
BIND(((?step2223 + ?targetMotifMatchRegionMatchBeginPositionMF_04081213) - 1) AS ?thisPositionOn55) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69723MF_04081210, 1, (STRLEN(?templateMotifCigarP69723MF_04081210) - STRLEN(REPLACE(?templateMotifCigarP69723MF_04081210, CONCAT('^(?:-*[^-]){', STR(((72 - ?templateMotifSequenceMatchBeginPositionP69723211) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1224) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69723MF_04081212, 1, (STRLEN(?targetMotifMatchCigarP69723MF_04081212) - STRLEN(REPLACE(?targetMotifMatchCigarP69723MF_04081212, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1224), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69723MF_04081212, 1, (STRLEN(?targetMotifMatchCigarP69723MF_04081212) - STRLEN(REPLACE(?targetMotifMatchCigarP69723MF_04081212, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1224), '}'), '')))), '[^-]', ''))) AS ?step2225) .
BIND(((?step2225 + ?targetMotifMatchRegionMatchBeginPositionMF_04081213) - 1) AS ?thisPositionOn56) .
BIND(?this AS ?pfs1t226) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfsb53) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfse54) .
FILTER ((BOUND(?thisPositionOn55) && BOUND(?thisPositionOn56))) .
BIND(URI(CONCAT(STR(?this), '#MF_04081a52')) AS ?annotation52) .
BIND(?this AS ?pfs51) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch231 faldo:location ?templateMotifSequenceMatchRegionP69723232 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP69723234 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP69723MF_04081227 .
?templateMotifSequenceMatchRegionP69723232 faldo:begin ?templateMotifSequenceMatchBeginP69723233 .
?templateMotifSequenceMatchBeginP69723233 faldo:position ?templateMotifSequenceMatchBeginPositionP69723228 ;
faldo:reference isoform:P69723-1 .
?templateMotifSequenceProfileAlignmentOperationP69723234 edam:has_input signature:MF_04081 ;
rdf:type edam:operation_0300 .
?targetMotifMatch235 faldo:location ?targetMotifMatchRegionMatch236 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04081238 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP69723MF_04081229 .
?targetMotifMatchRegionMatch236 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04081237 .
?targetMotifMatchRegionMatchBeginMF_04081237 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04081230 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04081238 edam:has_input signature:MF_04081 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69723MF_04081227, 1, (STRLEN(?templateMotifCigarP69723MF_04081227) - STRLEN(REPLACE(?templateMotifCigarP69723MF_04081227, CONCAT('^(?:-*[^-]){', STR(((74 - ?templateMotifSequenceMatchBeginPositionP69723228) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1239) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69723MF_04081229, 1, (STRLEN(?targetMotifMatchCigarP69723MF_04081229) - STRLEN(REPLACE(?targetMotifMatchCigarP69723MF_04081229, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1239), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69723MF_04081229, 1, (STRLEN(?targetMotifMatchCigarP69723MF_04081229) - STRLEN(REPLACE(?targetMotifMatchCigarP69723MF_04081229, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1239), '}'), '')))), '[^-]', ''))) AS ?step2240) .
BIND(((?step2240 + ?targetMotifMatchRegionMatchBeginPositionMF_04081230) - 1) AS ?thisPositionOn61) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69723MF_04081227, 1, (STRLEN(?templateMotifCigarP69723MF_04081227) - STRLEN(REPLACE(?templateMotifCigarP69723MF_04081227, CONCAT('^(?:-*[^-]){', STR(((79 - ?templateMotifSequenceMatchBeginPositionP69723228) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1241) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69723MF_04081229, 1, (STRLEN(?targetMotifMatchCigarP69723MF_04081229) - STRLEN(REPLACE(?targetMotifMatchCigarP69723MF_04081229, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1241), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69723MF_04081229, 1, (STRLEN(?targetMotifMatchCigarP69723MF_04081229) - STRLEN(REPLACE(?targetMotifMatchCigarP69723MF_04081229, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1241), '}'), '')))), '[^-]', ''))) AS ?step2242) .
BIND(((?step2242 + ?targetMotifMatchRegionMatchBeginPositionMF_04081230) - 1) AS ?thisPositionOn62) .
BIND(?this AS ?pfs1t243) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfsb59) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfse60) .
FILTER ((BOUND(?thisPositionOn61) && BOUND(?thisPositionOn62))) .
BIND(URI(CONCAT(STR(?this), '#MF_04081a58')) AS ?annotation58) .
BIND(?this AS ?pfs57) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch248 faldo:location ?templateMotifSequenceMatchRegionP69723249 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP69723251 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP69723MF_04081244 .
?templateMotifSequenceMatchRegionP69723249 faldo:begin ?templateMotifSequenceMatchBeginP69723250 .
?templateMotifSequenceMatchBeginP69723250 faldo:position ?templateMotifSequenceMatchBeginPositionP69723245 ;
faldo:reference isoform:P69723-1 .
?templateMotifSequenceProfileAlignmentOperationP69723251 edam:has_input signature:MF_04081 ;
rdf:type edam:operation_0300 .
?targetMotifMatch252 faldo:location ?targetMotifMatchRegionMatch253 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04081255 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP69723MF_04081246 .
?targetMotifMatchRegionMatch253 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04081254 .
?targetMotifMatchRegionMatchBeginMF_04081254 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04081247 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04081255 edam:has_input signature:MF_04081 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69723MF_04081244, 1, (STRLEN(?templateMotifCigarP69723MF_04081244) - STRLEN(REPLACE(?templateMotifCigarP69723MF_04081244, CONCAT('^(?:-*[^-]){', STR(((75 - ?templateMotifSequenceMatchBeginPositionP69723245) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1256) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69723MF_04081246, 1, (STRLEN(?targetMotifMatchCigarP69723MF_04081246) - STRLEN(REPLACE(?targetMotifMatchCigarP69723MF_04081246, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1256), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69723MF_04081246, 1, (STRLEN(?targetMotifMatchCigarP69723MF_04081246) - STRLEN(REPLACE(?targetMotifMatchCigarP69723MF_04081246, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1256), '}'), '')))), '[^-]', ''))) AS ?step2257) .
BIND(((?step2257 + ?targetMotifMatchRegionMatchBeginPositionMF_04081247) - 1) AS ?thisPositionOn67) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69723MF_04081244, 1, (STRLEN(?templateMotifCigarP69723MF_04081244) - STRLEN(REPLACE(?templateMotifCigarP69723MF_04081244, CONCAT('^(?:-*[^-]){', STR(((114 - ?templateMotifSequenceMatchBeginPositionP69723245) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1258) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69723MF_04081246, 1, (STRLEN(?targetMotifMatchCigarP69723MF_04081246) - STRLEN(REPLACE(?targetMotifMatchCigarP69723MF_04081246, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1258), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69723MF_04081246, 1, (STRLEN(?targetMotifMatchCigarP69723MF_04081246) - STRLEN(REPLACE(?targetMotifMatchCigarP69723MF_04081246, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1258), '}'), '')))), '[^-]', ''))) AS ?step2259) .
BIND(((?step2259 + ?targetMotifMatchRegionMatchBeginPositionMF_04081247) - 1) AS ?thisPositionOn68) .
BIND(?this AS ?pfs1t260) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfsb65) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn68))) AS ?pfse66) .
FILTER ((BOUND(?thisPositionOn67) && BOUND(?thisPositionOn68))) .
BIND(URI(CONCAT(STR(?this), '#MF_04081a64')) AS ?annotation64) .
BIND(?this AS ?pfs63) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch265 faldo:location ?templateMotifSequenceMatchRegionP69723266 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP69723268 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP69723MF_04081261 .
?templateMotifSequenceMatchRegionP69723266 faldo:begin ?templateMotifSequenceMatchBeginP69723267 .
?templateMotifSequenceMatchBeginP69723267 faldo:position ?templateMotifSequenceMatchBeginPositionP69723262 ;
faldo:reference isoform:P69723-1 .
?templateMotifSequenceProfileAlignmentOperationP69723268 edam:has_input signature:MF_04081 ;
rdf:type edam:operation_0300 .
?targetMotifMatch269 faldo:location ?targetMotifMatchRegionMatch270 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04081272 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP69723MF_04081263 .
?targetMotifMatchRegionMatch270 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04081271 .
?targetMotifMatchRegionMatchBeginMF_04081271 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04081264 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04081272 edam:has_input signature:MF_04081 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69723MF_04081261, 1, (STRLEN(?templateMotifCigarP69723MF_04081261) - STRLEN(REPLACE(?templateMotifCigarP69723MF_04081261, CONCAT('^(?:-*[^-]){', STR(((151 - ?templateMotifSequenceMatchBeginPositionP69723262) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1273) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69723MF_04081263, 1, (STRLEN(?targetMotifMatchCigarP69723MF_04081263) - STRLEN(REPLACE(?targetMotifMatchCigarP69723MF_04081263, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1273), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69723MF_04081263, 1, (STRLEN(?targetMotifMatchCigarP69723MF_04081263) - STRLEN(REPLACE(?targetMotifMatchCigarP69723MF_04081263, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1273), '}'), '')))), '[^-]', ''))) AS ?step2274) .
BIND(((?step2274 + ?targetMotifMatchRegionMatchBeginPositionMF_04081264) - 1) AS ?thisPositionOn73) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69723MF_04081261, 1, (STRLEN(?templateMotifCigarP69723MF_04081261) - STRLEN(REPLACE(?templateMotifCigarP69723MF_04081261, CONCAT('^(?:-*[^-]){', STR(((164 - ?templateMotifSequenceMatchBeginPositionP69723262) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1275) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69723MF_04081263, 1, (STRLEN(?targetMotifMatchCigarP69723MF_04081263) - STRLEN(REPLACE(?targetMotifMatchCigarP69723MF_04081263, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1275), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69723MF_04081263, 1, (STRLEN(?targetMotifMatchCigarP69723MF_04081263) - STRLEN(REPLACE(?targetMotifMatchCigarP69723MF_04081263, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1275), '}'), '')))), '[^-]', ''))) AS ?step2276) .
BIND(((?step2276 + ?targetMotifMatchRegionMatchBeginPositionMF_04081264) - 1) AS ?thisPositionOn74) .
BIND(?this AS ?pfs1t277) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfsb71) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn74))) AS ?pfse72) .
FILTER ((BOUND(?thisPositionOn73) && BOUND(?thisPositionOn74))) .
BIND(URI(CONCAT(STR(?this), '#MF_04081a70')) AS ?annotation70) .
BIND(?this AS ?pfs69) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch282 faldo:location ?templateMotifSequenceMatchRegionP69723283 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP69723285 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP69723MF_04081278 .
?templateMotifSequenceMatchRegionP69723283 faldo:begin ?templateMotifSequenceMatchBeginP69723284 .
?templateMotifSequenceMatchBeginP69723284 faldo:position ?templateMotifSequenceMatchBeginPositionP69723279 ;
faldo:reference isoform:P69723-1 .
?templateMotifSequenceProfileAlignmentOperationP69723285 edam:has_input signature:MF_04081 ;
rdf:type edam:operation_0300 .
?targetMotifMatch286 faldo:location ?targetMotifMatchRegionMatch287 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04081289 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP69723MF_04081280 .
?targetMotifMatchRegionMatch287 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04081288 .
?targetMotifMatchRegionMatchBeginMF_04081288 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04081281 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04081289 edam:has_input signature:MF_04081 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69723MF_04081278, 1, (STRLEN(?templateMotifCigarP69723MF_04081278) - STRLEN(REPLACE(?templateMotifCigarP69723MF_04081278, CONCAT('^(?:-*[^-]){', STR(((108 - ?templateMotifSequenceMatchBeginPositionP69723279) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1290) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69723MF_04081280, 1, (STRLEN(?targetMotifMatchCigarP69723MF_04081280) - STRLEN(REPLACE(?targetMotifMatchCigarP69723MF_04081280, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1290), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69723MF_04081280, 1, (STRLEN(?targetMotifMatchCigarP69723MF_04081280) - STRLEN(REPLACE(?targetMotifMatchCigarP69723MF_04081280, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1290), '}'), '')))), '[^-]', ''))) AS ?step2291) .
BIND(((?step2291 + ?targetMotifMatchRegionMatchBeginPositionMF_04081281) - 1) AS ?thisPositionOn79) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69723MF_04081278, 1, (STRLEN(?templateMotifCigarP69723MF_04081278) - STRLEN(REPLACE(?templateMotifCigarP69723MF_04081278, CONCAT('^(?:-*[^-]){', STR(((139 - ?templateMotifSequenceMatchBeginPositionP69723279) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1292) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69723MF_04081280, 1, (STRLEN(?targetMotifMatchCigarP69723MF_04081280) - STRLEN(REPLACE(?targetMotifMatchCigarP69723MF_04081280, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1292), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69723MF_04081280, 1, (STRLEN(?targetMotifMatchCigarP69723MF_04081280) - STRLEN(REPLACE(?targetMotifMatchCigarP69723MF_04081280, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1292), '}'), '')))), '[^-]', ''))) AS ?step2293) .
BIND(((?step2293 + ?targetMotifMatchRegionMatchBeginPositionMF_04081281) - 1) AS ?thisPositionOn80) .
BIND(?this AS ?pfs1t294) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn79))) AS ?pfsb77) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn80))) AS ?pfse78) .
FILTER ((BOUND(?thisPositionOn79) && BOUND(?thisPositionOn80))) .
BIND(URI(CONCAT(STR(?this), '#MF_04081a76')) AS ?annotation76) .
BIND(?this AS ?pfs75) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch299 faldo:location ?templateMotifSequenceMatchRegionP69723300 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP69723302 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP69723MF_04081295 .
?templateMotifSequenceMatchRegionP69723300 faldo:begin ?templateMotifSequenceMatchBeginP69723301 .
?templateMotifSequenceMatchBeginP69723301 faldo:position ?templateMotifSequenceMatchBeginPositionP69723296 ;
faldo:reference isoform:P69723-1 .
?templateMotifSequenceProfileAlignmentOperationP69723302 edam:has_input signature:MF_04081 ;
rdf:type edam:operation_0300 .
?targetMotifMatch303 faldo:location ?targetMotifMatchRegionMatch304 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04081306 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP69723MF_04081297 .
?targetMotifMatchRegionMatch304 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04081305 .
?targetMotifMatchRegionMatchBeginMF_04081305 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04081298 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04081306 edam:has_input signature:MF_04081 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69723MF_04081295, 1, (STRLEN(?templateMotifCigarP69723MF_04081295) - STRLEN(REPLACE(?templateMotifCigarP69723MF_04081295, CONCAT('^(?:-*[^-]){', STR(((144 - ?templateMotifSequenceMatchBeginPositionP69723296) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1307) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69723MF_04081297, 1, (STRLEN(?targetMotifMatchCigarP69723MF_04081297) - STRLEN(REPLACE(?targetMotifMatchCigarP69723MF_04081297, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1307), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69723MF_04081297, 1, (STRLEN(?targetMotifMatchCigarP69723MF_04081297) - STRLEN(REPLACE(?targetMotifMatchCigarP69723MF_04081297, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1307), '}'), '')))), '[^-]', ''))) AS ?step2308) .
BIND(((?step2308 + ?targetMotifMatchRegionMatchBeginPositionMF_04081298) - 1) AS ?thisPositionOn85) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69723MF_04081295, 1, (STRLEN(?templateMotifCigarP69723MF_04081295) - STRLEN(REPLACE(?templateMotifCigarP69723MF_04081295, CONCAT('^(?:-*[^-]){', STR(((153 - ?templateMotifSequenceMatchBeginPositionP69723296) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1309) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69723MF_04081297, 1, (STRLEN(?targetMotifMatchCigarP69723MF_04081297) - STRLEN(REPLACE(?targetMotifMatchCigarP69723MF_04081297, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1309), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69723MF_04081297, 1, (STRLEN(?targetMotifMatchCigarP69723MF_04081297) - STRLEN(REPLACE(?targetMotifMatchCigarP69723MF_04081297, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1309), '}'), '')))), '[^-]', ''))) AS ?step2310) .
BIND(((?step2310 + ?targetMotifMatchRegionMatchBeginPositionMF_04081298) - 1) AS ?thisPositionOn86) .
BIND(?this AS ?pfs1t311) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn85))) AS ?pfsb83) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn86))) AS ?pfse84) .
FILTER ((BOUND(?thisPositionOn85) && BOUND(?thisPositionOn86))) .
BIND(URI(CONCAT(STR(?this), '#MF_04081a82')) AS ?annotation82) .
BIND(?this AS ?pfs81) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch316 faldo:location ?templateMotifSequenceMatchRegionP69723317 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP69723319 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP69723MF_04081312 .
?templateMotifSequenceMatchRegionP69723317 faldo:begin ?templateMotifSequenceMatchBeginP69723318 .
?templateMotifSequenceMatchBeginP69723318 faldo:position ?templateMotifSequenceMatchBeginPositionP69723313 ;
faldo:reference isoform:P69723-1 .
?templateMotifSequenceProfileAlignmentOperationP69723319 edam:has_input signature:MF_04081 ;
rdf:type edam:operation_0300 .
?targetMotifMatch320 faldo:location ?targetMotifMatchRegionMatch321 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04081323 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP69723MF_04081314 .
?targetMotifMatchRegionMatch321 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04081322 .
?targetMotifMatchRegionMatchBeginMF_04081322 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04081315 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04081323 edam:has_input signature:MF_04081 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69723MF_04081312, 1, (STRLEN(?templateMotifCigarP69723MF_04081312) - STRLEN(REPLACE(?templateMotifCigarP69723MF_04081312, CONCAT('^(?:-*[^-]){', STR(((150 - ?templateMotifSequenceMatchBeginPositionP69723313) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1324) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69723MF_04081314, 1, (STRLEN(?targetMotifMatchCigarP69723MF_04081314) - STRLEN(REPLACE(?targetMotifMatchCigarP69723MF_04081314, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1324), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69723MF_04081314, 1, (STRLEN(?targetMotifMatchCigarP69723MF_04081314) - STRLEN(REPLACE(?targetMotifMatchCigarP69723MF_04081314, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1324), '}'), '')))), '[^-]', ''))) AS ?step2325) .
BIND(((?step2325 + ?targetMotifMatchRegionMatchBeginPositionMF_04081315) - 1) AS ?thisPositionOn91) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69723MF_04081312, 1, (STRLEN(?templateMotifCigarP69723MF_04081312) - STRLEN(REPLACE(?templateMotifCigarP69723MF_04081312, CONCAT('^(?:-*[^-]){', STR(((151 - ?templateMotifSequenceMatchBeginPositionP69723313) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1326) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69723MF_04081314, 1, (STRLEN(?targetMotifMatchCigarP69723MF_04081314) - STRLEN(REPLACE(?targetMotifMatchCigarP69723MF_04081314, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1326), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69723MF_04081314, 1, (STRLEN(?targetMotifMatchCigarP69723MF_04081314) - STRLEN(REPLACE(?targetMotifMatchCigarP69723MF_04081314, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1326), '}'), '')))), '[^-]', ''))) AS ?step2327) .
BIND(((?step2327 + ?targetMotifMatchRegionMatchBeginPositionMF_04081315) - 1) AS ?thisPositionOn92) .
BIND(?this AS ?pfs1t328) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn91))) AS ?pfsb89) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn92))) AS ?pfse90) .
FILTER ((BOUND(?thisPositionOn91) && BOUND(?thisPositionOn92))) .
BIND(URI(CONCAT(STR(?this), '#MF_04081a88')) AS ?annotation88) .
BIND(?this AS ?pfs87) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch333 faldo:location ?templateMotifSequenceMatchRegionP69723334 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP69723336 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP69723MF_04081329 .
?templateMotifSequenceMatchRegionP69723334 faldo:begin ?templateMotifSequenceMatchBeginP69723335 .
?templateMotifSequenceMatchBeginP69723335 faldo:position ?templateMotifSequenceMatchBeginPositionP69723330 ;
faldo:reference isoform:P69723-1 .
?templateMotifSequenceProfileAlignmentOperationP69723336 edam:has_input signature:MF_04081 ;
rdf:type edam:operation_0300 .
?targetMotifMatch337 faldo:location ?targetMotifMatchRegionMatch338 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04081340 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP69723MF_04081331 .
?targetMotifMatchRegionMatch338 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04081339 .
?targetMotifMatchRegionMatchBeginMF_04081339 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04081332 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04081340 edam:has_input signature:MF_04081 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69723MF_04081329, 1, (STRLEN(?templateMotifCigarP69723MF_04081329) - STRLEN(REPLACE(?templateMotifCigarP69723MF_04081329, CONCAT('^(?:-*[^-]){', STR(((171 - ?templateMotifSequenceMatchBeginPositionP69723330) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1341) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69723MF_04081331, 1, (STRLEN(?targetMotifMatchCigarP69723MF_04081331) - STRLEN(REPLACE(?targetMotifMatchCigarP69723MF_04081331, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1341), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69723MF_04081331, 1, (STRLEN(?targetMotifMatchCigarP69723MF_04081331) - STRLEN(REPLACE(?targetMotifMatchCigarP69723MF_04081331, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1341), '}'), '')))), '[^-]', ''))) AS ?step2342) .
BIND(((?step2342 + ?targetMotifMatchRegionMatchBeginPositionMF_04081332) - 1) AS ?thisPositionOn97) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69723MF_04081329, 1, (STRLEN(?templateMotifCigarP69723MF_04081329) - STRLEN(REPLACE(?templateMotifCigarP69723MF_04081329, CONCAT('^(?:-*[^-]){', STR(((172 - ?templateMotifSequenceMatchBeginPositionP69723330) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1343) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69723MF_04081331, 1, (STRLEN(?targetMotifMatchCigarP69723MF_04081331) - STRLEN(REPLACE(?targetMotifMatchCigarP69723MF_04081331, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1343), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69723MF_04081331, 1, (STRLEN(?targetMotifMatchCigarP69723MF_04081331) - STRLEN(REPLACE(?targetMotifMatchCigarP69723MF_04081331, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1343), '}'), '')))), '[^-]', ''))) AS ?step2344) .
BIND(((?step2344 + ?targetMotifMatchRegionMatchBeginPositionMF_04081332) - 1) AS ?thisPositionOn98) .
BIND(?this AS ?pfs1t345) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn97))) AS ?pfsb95) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn98))) AS ?pfse96) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn97, (?thisPositionOn98 - ?thisPositionOn97)) = 'ED')) .
BIND(URI(CONCAT(STR(?this), '#MF_04081a94')) AS ?annotation94) .
BIND(?this AS ?pfs93) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch350 faldo:location ?templateMotifSequenceMatchRegionP69723351 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP69723353 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP69723MF_04081346 .
?templateMotifSequenceMatchRegionP69723351 faldo:begin ?templateMotifSequenceMatchBeginP69723352 .
?templateMotifSequenceMatchBeginP69723352 faldo:position ?templateMotifSequenceMatchBeginPositionP69723347 ;
faldo:reference isoform:P69723-1 .
?templateMotifSequenceProfileAlignmentOperationP69723353 edam:has_input signature:MF_04081 ;
rdf:type edam:operation_0300 .
?targetMotifMatch354 faldo:location ?targetMotifMatchRegionMatch355 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04081357 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP69723MF_04081348 .
?targetMotifMatchRegionMatch355 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04081356 .
?targetMotifMatchRegionMatchBeginMF_04081356 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04081349 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04081357 edam:has_input signature:MF_04081 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69723MF_04081346, 1, (STRLEN(?templateMotifCigarP69723MF_04081346) - STRLEN(REPLACE(?templateMotifCigarP69723MF_04081346, CONCAT('^(?:-*[^-]){', STR(((96 - ?templateMotifSequenceMatchBeginPositionP69723347) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1358) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69723MF_04081348, 1, (STRLEN(?targetMotifMatchCigarP69723MF_04081348) - STRLEN(REPLACE(?targetMotifMatchCigarP69723MF_04081348, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1358), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69723MF_04081348, 1, (STRLEN(?targetMotifMatchCigarP69723MF_04081348) - STRLEN(REPLACE(?targetMotifMatchCigarP69723MF_04081348, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1358), '}'), '')))), '[^-]', ''))) AS ?step2359) .
BIND(((?step2359 + ?targetMotifMatchRegionMatchBeginPositionMF_04081349) - 1) AS ?thisPositionOn103) .
BIND(?thisPositionOn103 AS ?thisPositionOn104) .
BIND(?this AS ?pfs1t360) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn103))) AS ?pfsb101) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn104))) AS ?pfse102) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn103, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_04081a100')) AS ?annotation100) .
BIND(?this AS ?pfs99) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch365 faldo:location ?templateMotifSequenceMatchRegionP69723366 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP69723368 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP69723MF_04081361 .
?templateMotifSequenceMatchRegionP69723366 faldo:begin ?templateMotifSequenceMatchBeginP69723367 .
?templateMotifSequenceMatchBeginP69723367 faldo:position ?templateMotifSequenceMatchBeginPositionP69723362 ;
faldo:reference isoform:P69723-1 .
?templateMotifSequenceProfileAlignmentOperationP69723368 edam:has_input signature:MF_04081 ;
rdf:type edam:operation_0300 .
?targetMotifMatch369 faldo:location ?targetMotifMatchRegionMatch370 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04081372 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP69723MF_04081363 .
?targetMotifMatchRegionMatch370 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04081371 .
?targetMotifMatchRegionMatchBeginMF_04081371 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04081364 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04081372 edam:has_input signature:MF_04081 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69723MF_04081361, 1, (STRLEN(?templateMotifCigarP69723MF_04081361) - STRLEN(REPLACE(?templateMotifCigarP69723MF_04081361, CONCAT('^(?:-*[^-]){', STR(((144 - ?templateMotifSequenceMatchBeginPositionP69723362) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1373) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69723MF_04081363, 1, (STRLEN(?targetMotifMatchCigarP69723MF_04081363) - STRLEN(REPLACE(?targetMotifMatchCigarP69723MF_04081363, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1373), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69723MF_04081363, 1, (STRLEN(?targetMotifMatchCigarP69723MF_04081363) - STRLEN(REPLACE(?targetMotifMatchCigarP69723MF_04081363, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1373), '}'), '')))), '[^-]', ''))) AS ?step2374) .
BIND(((?step2374 + ?targetMotifMatchRegionMatchBeginPositionMF_04081364) - 1) AS ?thisPositionOn109) .
BIND(?thisPositionOn109 AS ?thisPositionOn110) .
BIND(?this AS ?pfs1t375) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn109))) AS ?pfsb107) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn110))) AS ?pfse108) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn109, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_04081a106')) AS ?annotation106) .
BIND(?this AS ?pfs105) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch380 faldo:location ?templateMotifSequenceMatchRegionP69723381 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP69723383 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP69723MF_04081376 .
?templateMotifSequenceMatchRegionP69723381 faldo:begin ?templateMotifSequenceMatchBeginP69723382 .
?templateMotifSequenceMatchBeginP69723382 faldo:position ?templateMotifSequenceMatchBeginPositionP69723377 ;
faldo:reference isoform:P69723-1 .
?templateMotifSequenceProfileAlignmentOperationP69723383 edam:has_input signature:MF_04081 ;
rdf:type edam:operation_0300 .
?targetMotifMatch384 faldo:location ?targetMotifMatchRegionMatch385 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04081387 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP69723MF_04081378 .
?targetMotifMatchRegionMatch385 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04081386 .
?targetMotifMatchRegionMatchBeginMF_04081386 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04081379 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04081387 edam:has_input signature:MF_04081 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69723MF_04081376, 1, (STRLEN(?templateMotifCigarP69723MF_04081376) - STRLEN(REPLACE(?templateMotifCigarP69723MF_04081376, CONCAT('^(?:-*[^-]){', STR(((155 - ?templateMotifSequenceMatchBeginPositionP69723377) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1388) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69723MF_04081378, 1, (STRLEN(?targetMotifMatchCigarP69723MF_04081378) - STRLEN(REPLACE(?targetMotifMatchCigarP69723MF_04081378, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1388), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69723MF_04081378, 1, (STRLEN(?targetMotifMatchCigarP69723MF_04081378) - STRLEN(REPLACE(?targetMotifMatchCigarP69723MF_04081378, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1388), '}'), '')))), '[^-]', ''))) AS ?step2389) .
BIND(((?step2389 + ?targetMotifMatchRegionMatchBeginPositionMF_04081379) - 1) AS ?thisPositionOn115) .
BIND(?thisPositionOn115 AS ?thisPositionOn116) .
BIND(?this AS ?pfs1t390) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn115))) AS ?pfsb113) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn116))) AS ?pfse114) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn115, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_04081a112')) AS ?annotation112) .
BIND(?this AS ?pfs111) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch395 faldo:location ?templateMotifSequenceMatchRegionP69723396 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP69723398 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP69723MF_04081391 .
?templateMotifSequenceMatchRegionP69723396 faldo:begin ?templateMotifSequenceMatchBeginP69723397 .
?templateMotifSequenceMatchBeginP69723397 faldo:position ?templateMotifSequenceMatchBeginPositionP69723392 ;
faldo:reference isoform:P69723-1 .
?templateMotifSequenceProfileAlignmentOperationP69723398 edam:has_input signature:MF_04081 ;
rdf:type edam:operation_0300 .
?targetMotifMatch399 faldo:location ?targetMotifMatchRegionMatch400 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04081402 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP69723MF_04081393 .
?targetMotifMatchRegionMatch400 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04081401 .
?targetMotifMatchRegionMatchBeginMF_04081401 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04081394 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04081402 edam:has_input signature:MF_04081 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69723MF_04081391, 1, (STRLEN(?templateMotifCigarP69723MF_04081391) - STRLEN(REPLACE(?templateMotifCigarP69723MF_04081391, CONCAT('^(?:-*[^-]){', STR(((165 - ?templateMotifSequenceMatchBeginPositionP69723392) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1403) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69723MF_04081393, 1, (STRLEN(?targetMotifMatchCigarP69723MF_04081393) - STRLEN(REPLACE(?targetMotifMatchCigarP69723MF_04081393, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1403), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69723MF_04081393, 1, (STRLEN(?targetMotifMatchCigarP69723MF_04081393) - STRLEN(REPLACE(?targetMotifMatchCigarP69723MF_04081393, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1403), '}'), '')))), '[^-]', ''))) AS ?step2404) .
BIND(((?step2404 + ?targetMotifMatchRegionMatchBeginPositionMF_04081394) - 1) AS ?thisPositionOn121) .
BIND(?thisPositionOn121 AS ?thisPositionOn122) .
BIND(?this AS ?pfs1t405) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn121))) AS ?pfsb119) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn122))) AS ?pfse120) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn121, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_04081a118')) AS ?annotation118) .
BIND(?this AS ?pfs117) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch410 faldo:location ?templateMotifSequenceMatchRegionP69723411 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP69723413 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP69723MF_04081406 .
?templateMotifSequenceMatchRegionP69723411 faldo:begin ?templateMotifSequenceMatchBeginP69723412 .
?templateMotifSequenceMatchBeginP69723412 faldo:position ?templateMotifSequenceMatchBeginPositionP69723407 ;
faldo:reference isoform:P69723-1 .
?templateMotifSequenceProfileAlignmentOperationP69723413 edam:has_input signature:MF_04081 ;
rdf:type edam:operation_0300 .
?targetMotifMatch414 faldo:location ?targetMotifMatchRegionMatch415 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04081417 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP69723MF_04081408 .
?targetMotifMatchRegionMatch415 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04081416 .
?targetMotifMatchRegionMatchBeginMF_04081416 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04081409 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04081417 edam:has_input signature:MF_04081 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69723MF_04081406, 1, (STRLEN(?templateMotifCigarP69723MF_04081406) - STRLEN(REPLACE(?templateMotifCigarP69723MF_04081406, CONCAT('^(?:-*[^-]){', STR(((188 - ?templateMotifSequenceMatchBeginPositionP69723407) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1418) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69723MF_04081408, 1, (STRLEN(?targetMotifMatchCigarP69723MF_04081408) - STRLEN(REPLACE(?targetMotifMatchCigarP69723MF_04081408, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1418), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69723MF_04081408, 1, (STRLEN(?targetMotifMatchCigarP69723MF_04081408) - STRLEN(REPLACE(?targetMotifMatchCigarP69723MF_04081408, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1418), '}'), '')))), '[^-]', ''))) AS ?step2419) .
BIND(((?step2419 + ?targetMotifMatchRegionMatchBeginPositionMF_04081409) - 1) AS ?thisPositionOn127) .
BIND(?thisPositionOn127 AS ?thisPositionOn128) .
BIND(?this AS ?pfs1t420) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn127))) AS ?pfsb125) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn128))) AS ?pfse126) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn127, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_04081a124')) AS ?annotation124) .
BIND(?this AS ?pfs123) .
}
}
"xsd:string |
