| http://purl.uniprot.org/unirules/MF_04100#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:952567 up:source unirule:MF_04100 .
_:952568 up:source unirule:MF_04100 .
_:952569 up:source unirule:MF_04100 .
_:952570 up:source unirule:MF_04100 .
_:952571 up:source unirule:MF_04100 .
_:952572 up:source unirule:MF_04100 .
_:952573 up:source unirule:MF_04100 .
_:952574 up:source unirule:MF_04100 .
_:952575 up:source unirule:MF_04100 .
_:952576 up:source unirule:MF_04100 .
_:952577 up:source unirule:MF_04100 .
_:952578 up:source unirule:MF_04100 .
_:952579 up:source unirule:MF_04100 .
_:952580 up:source unirule:MF_04100 .
_:952581 up:source unirule:MF_04100 .
_:952582 up:source unirule:MF_04100 .
_:952583 up:source unirule:MF_04100 .
_:952584 up:source unirule:MF_04100 .
_:952585 up:source unirule:MF_04100 .
_:952586 up:source unirule:MF_04100 .
_:952587 up:source unirule:MF_04100 .
_:952588 up:source unirule:MF_04100 .
_:952589 up:source unirule:MF_04100 .
_:952590 up:source unirule:MF_04100 .
_:952591 up:source unirule:MF_04100 .
_:952592 up:source unirule:MF_04100 .
_:952593 up:source unirule:MF_04100 .
_:952594 up:source unirule:MF_04100 .
_:952595 up:source unirule:MF_04100 .
_:952596 up:source unirule:MF_04100 .
_:952597 up:source unirule:MF_04100 .
_:952598 up:source unirule:MF_04100 .
_:952599 up:source unirule:MF_04100 .
_:952600 up:source unirule:MF_04100 .
_:952601 up:source unirule:MF_04100 .
_:952602 up:source unirule:MF_04100 .
_:952603 up:source unirule:MF_04100 .
_:952604 up:source unirule:MF_04100 .
_:952605 up:source unirule:MF_04100 .
_:952606 up:source unirule:MF_04100 .
_:952607 up:source unirule:MF_04100 .
_:952608 up:source unirule:MF_04100 .
_:952609 up:source unirule:MF_04100 .
_:952610 up:source unirule:MF_04100 .
_:952611 up:source unirule:MF_04100 .
?this up:annotation ?annotation1 ,
?annotation2 ,
?annotation4 ,
?annotation5 ,
?annotation6 ,
?annotation7 ;
up:classifiedWith GO:0000166 ,
GO:0003677 ,
GO:0003887 ,
GO:0008408 ,
GO:0039686 ,
keyword:1194 ,
keyword:235 ,
keyword:238 ,
keyword:239 ,
keyword:269 ,
keyword:378 ,
keyword:460 ,
keyword:479 ,
keyword:511 ,
keyword:540 ,
keyword:548 ,
keyword:808 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.7.7.7' ,
'3.1.11.-' ;
up:fullName 'DNA-directed DNA polymerase' ;
rdf:type up:Structured_Name .
?annotation1 a up:Function_Annotation ;
rdfs:comment "Replicates the viral genomic DNA. This polymerase possesses two enzymatic activities: DNA synthesis (polymerase) and an exonucleolytic activity that degrades single-stranded DNA in the 3'- to 5'-direction for proofreading purpose." .
?annotation2 up:activity ?activity3 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity3 up:catalyticActivity ;
up:enzymeClass .
?annotation4 up:cofactor chebi:18420 ;
rdf:type up:Cofactor_Annotation .
?annotation5 a up:Subunit_Annotation ;
rdfs:comment 'Part of the replicase complex that includes the DNA polymerase, the polymerase clamp, the clamp loader complex, the single-stranded DNA binding protein, and the primase/helicase. Interacts with the polymerase clamp; this interaction constitutes the polymerase holoenzyme.' .
?annotation6 a up:Domain_Annotation ;
rdfs:comment "The N-terminus contains the 3'-5' exonuclease activity. The C-terminus contains the polymerase activity and is involved in binding to the polymerase clamp protein. A beta hairpin structure is necessary for the proofreading function of the polymerase." .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the DNA polymerase type-B family.' .
?pfs8 up:annotation ?annotation9 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
up:ligand ?ligand12 ;
rdf:type up:Binding_Site_Annotation .
?pfsb10 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?ligand12 rdfs:subClassOf ?molecule13 .
?molecule13 rdfs:label 'substrate' .
?pfs16 up:annotation ?annotation17 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
up:ligand ?ligand20 ;
rdf:type up:Binding_Site_Annotation .
?pfsb18 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?ligand20 rdfs:subClassOf ?molecule21 .
?molecule21 rdfs:label 'substrate' .
?pfs24 up:annotation ?annotation25 .
?annotation25 faldo:begin ?pfsb26 ;
faldo:end ?pfse27 ;
up:ligand ?ligand28 ;
rdf:type up:Binding_Site_Annotation .
?pfsb26 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?pfse27 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?ligand28 rdfs:subClassOf ?molecule29 .
?molecule29 rdfs:label 'substrate' .
?pfs32 up:annotation ?annotation33 .
?annotation33 faldo:begin ?pfsb34 ;
faldo:end ?pfse35 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Binding of DNA in B-conformation' .
?pfsb34 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?pfse35 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?pfs38 up:annotation ?annotation39 .
?annotation39 faldo:begin ?pfsb40 ;
faldo:end ?pfse41 ;
up:ligand ?ligand42 ;
rdf:type up:Binding_Site_Annotation .
?pfsb40 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?pfse41 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?ligand42 rdfs:subClassOf chebi:18420 .
?pfs45 up:annotation ?annotation46 .
?annotation46 faldo:begin ?pfsb47 ;
faldo:end ?pfse48 ;
up:ligand ?ligand49 ;
rdf:type up:Binding_Site_Annotation .
?pfsb47 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?pfse48 faldo:position ?thisPositionOn51 ;
rdf:type faldo:ExactPosition .
?ligand49 rdfs:subClassOf chebi:18420 .
?pfs52 up:annotation ?annotation53 .
?annotation53 faldo:begin ?pfsb54 ;
faldo:end ?pfse55 ;
up:ligand ?ligand56 ;
rdf:type up:Binding_Site_Annotation .
?pfsb54 faldo:position ?thisPositionOn57 ;
rdf:type faldo:ExactPosition .
?pfse55 faldo:position ?thisPositionOn58 ;
rdf:type faldo:ExactPosition .
?ligand56 rdfs:subClassOf chebi:18420 .
?pfs59 up:annotation ?annotation60 .
?annotation60 faldo:begin ?pfsb61 ;
faldo:end ?pfse62 ;
up:ligand ?ligand63 ;
rdf:type up:Binding_Site_Annotation .
?pfsb61 faldo:position ?thisPositionOn64 ;
rdf:type faldo:ExactPosition .
?pfse62 faldo:position ?thisPositionOn65 ;
rdf:type faldo:ExactPosition .
?ligand63 rdfs:subClassOf chebi:18420 .
?pfs66 up:annotation ?annotation67 .
?annotation67 faldo:begin ?pfsb68 ;
faldo:end ?pfse69 ;
up:ligand ?ligand70 ;
rdf:type up:Binding_Site_Annotation .
?pfsb68 faldo:position ?thisPositionOn71 ;
rdf:type faldo:ExactPosition .
?pfse69 faldo:position ?thisPositionOn72 ;
rdf:type faldo:ExactPosition .
?ligand70 rdfs:subClassOf chebi:18420 .
?pfs73 up:annotation ?annotation74 .
?annotation74 faldo:begin ?pfsb75 ;
faldo:end ?pfse76 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Optimization of metal coordination by the polymerase active site' .
?pfsb75 faldo:position ?thisPositionOn77 ;
rdf:type faldo:ExactPosition .
?pfse76 faldo:position ?thisPositionOn78 ;
rdf:type faldo:ExactPosition .
?pfs79 up:annotation ?annotation80 .
?annotation80 faldo:begin ?pfsb81 ;
faldo:end ?pfse82 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Optimization of metal coordination by the polymerase active site' .
?pfsb81 faldo:position ?thisPositionOn83 ;
rdf:type faldo:ExactPosition .
?pfse82 faldo:position ?thisPositionOn84 ;
rdf:type faldo:ExactPosition .
?pfs85 up:annotation ?annotation86 .
?annotation86 faldo:begin ?pfsb87 ;
faldo:end ?pfse88 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Essential for viral replication' .
?pfsb87 faldo:position ?thisPositionOn89 ;
rdf:type faldo:ExactPosition .
?pfse88 faldo:position ?thisPositionOn90 ;
rdf:type faldo:ExactPosition .
?pfs91 up:annotation ?annotation92 .
?annotation92 faldo:begin ?pfsb93 ;
faldo:end ?pfse94 ;
rdf:type up:Region_Annotation ;
rdfs:comment "3'-5'exonuclease" .
?pfsb93 faldo:position ?thisPositionOn95 ;
rdf:type faldo:ExactPosition .
?pfse94 faldo:position ?thisPositionOn96 ;
rdf:type faldo:ExactPosition .
?pfs97 up:annotation ?annotation98 .
?annotation98 faldo:begin ?pfsb99 ;
faldo:end ?pfse100 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Beta hairpin' .
?pfsb99 faldo:position ?thisPositionOn101 ;
rdf:type faldo:ExactPosition .
?pfse100 faldo:position ?thisPositionOn102 ;
rdf:type faldo:ExactPosition .
?pfs103 up:annotation ?annotation104 .
?annotation104 faldo:begin ?pfsb105 ;
faldo:end ?pfse106 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Polymerase' .
?pfsb105 faldo:position ?thisPositionOn107 ;
rdf:type faldo:ExactPosition .
?pfse106 faldo:position ?thisPositionOn108 ;
rdf:type faldo:ExactPosition .
?pfs109 up:annotation ?annotation110 .
?annotation110 faldo:begin ?pfsb111 ;
faldo:end ?pfse112 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Interaction with the polymerase clamp' .
?pfsb111 faldo:position ?thisPositionOn113 ;
rdf:type faldo:ExactPosition .
?pfse112 faldo:position ?thisPositionOn114 ;
rdf:type faldo:ExactPosition .
?pfs115 up:annotation ?annotation116 .
?annotation116 faldo:begin ?pfsb117 ;
faldo:end ?pfse118 ;
up:ligand ?ligand119 ;
rdf:type up:Binding_Site_Annotation .
?pfsb117 faldo:position ?thisPositionOn120 ;
rdf:type faldo:ExactPosition .
?pfse118 faldo:position ?thisPositionOn121 ;
rdf:type faldo:ExactPosition .
?ligand119 rdfs:subClassOf chebi:18420 .
?pfs122 up:annotation ?annotation123 .
?annotation123 faldo:begin ?pfsb124 ;
faldo:end ?pfse125 ;
up:ligand ?ligand126 ;
rdf:type up:Binding_Site_Annotation .
?pfsb124 faldo:position ?thisPositionOn127 ;
rdf:type faldo:ExactPosition .
?pfse125 faldo:position ?thisPositionOn128 ;
rdf:type faldo:ExactPosition .
?ligand126 rdfs:subClassOf chebi:18420 .
?pfs129 up:annotation ?annotation130 .
?annotation130 faldo:begin ?pfsb131 ;
faldo:end ?pfse132 ;
up:ligand ?ligand133 ;
rdf:type up:Binding_Site_Annotation .
?pfsb131 faldo:position ?thisPositionOn134 ;
rdf:type faldo:ExactPosition .
?pfse132 faldo:position ?thisPositionOn135 ;
rdf:type faldo:ExactPosition .
?ligand133 rdfs:subClassOf chebi:18420 .
?pfs136 up:annotation ?annotation137 .
?annotation137 faldo:begin ?pfsb138 ;
faldo:end ?pfse139 ;
up:ligand ?ligand140 ;
rdf:type up:Binding_Site_Annotation .
?pfsb138 faldo:position ?thisPositionOn141 ;
rdf:type faldo:ExactPosition .
?pfse139 faldo:position ?thisPositionOn142 ;
rdf:type faldo:ExactPosition .
?ligand140 rdfs:subClassOf chebi:18420 .
?pfs143 up:annotation ?annotation144 .
?annotation144 faldo:begin ?pfsb145 ;
faldo:end ?pfse146 ;
up:ligand ?ligand147 ;
rdf:type up:Binding_Site_Annotation .
?pfsb145 faldo:position ?thisPositionOn148 ;
rdf:type faldo:ExactPosition .
?pfse146 faldo:position ?thisPositionOn149 ;
rdf:type faldo:ExactPosition .
?ligand147 rdfs:subClassOf chebi:18420 .
_:952612 a rdf:Statement ;
up:attribution _:952567 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:952613 a rdf:Statement ;
up:attribution _:952568 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation1 .
_:952614 a rdf:Statement ;
up:attribution _:952569 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:952615 a rdf:Statement ;
up:attribution _:952570 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:952616 a rdf:Statement ;
up:attribution _:952571 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:952617 a rdf:Statement ;
up:attribution _:952572 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:952618 a rdf:Statement ;
up:attribution _:952573 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:952619 a rdf:Statement ;
up:attribution _:952574 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:235 .
_:952620 a rdf:Statement ;
up:attribution _:952575 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:238 .
_:952621 a rdf:Statement ;
up:attribution _:952576 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:239 .
_:952622 a rdf:Statement ;
up:attribution _:952577 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:269 .
_:952623 a rdf:Statement ;
up:attribution _:952578 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:952624 a rdf:Statement ;
up:attribution _:952579 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:952625 a rdf:Statement ;
up:attribution _:952580 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:952626 a rdf:Statement ;
up:attribution _:952581 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:511 .
_:952627 a rdf:Statement ;
up:attribution _:952582 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:540 .
_:952628 a rdf:Statement ;
up:attribution _:952583 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:548 .
_:952629 a rdf:Statement ;
up:attribution _:952584 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:952630 a rdf:Statement ;
up:attribution _:952585 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1194 .
_:952631 a rdf:Statement ;
up:attribution _:952586 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008408 .
_:952632 a rdf:Statement ;
up:attribution _:952587 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003677 .
_:952633 a rdf:Statement ;
up:attribution _:952588 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003887 .
_:952634 a rdf:Statement ;
up:attribution _:952589 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000166 .
_:952635 a rdf:Statement ;
up:attribution _:952590 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0039686 .
_:952636 a rdf:Statement ;
up:source unirule:MF_04100 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:952637 a rdf:Statement ;
up:attribution _:952591 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:952638 a rdf:Statement ;
up:source unirule:MF_04100 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:952639 a rdf:Statement ;
up:attribution _:952592 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:952640 a rdf:Statement ;
up:source unirule:MF_04100 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:952641 a rdf:Statement ;
up:attribution _:952593 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:952642 a rdf:Statement ;
up:source unirule:MF_04100 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:952643 a rdf:Statement ;
up:attribution _:952594 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:952644 a rdf:Statement ;
up:source unirule:MF_04100 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:952645 a rdf:Statement ;
up:attribution _:952595 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:952646 a rdf:Statement ;
up:source unirule:MF_04100 ;
rdf:subject ?pfs45 ;
rdf:predicate up:annotation ;
rdf:object ?annotation46 .
_:952647 a rdf:Statement ;
up:attribution _:952596 ;
rdf:subject ?pfs45 ;
rdf:predicate up:annotation ;
rdf:object ?annotation46 .
_:952648 a rdf:Statement ;
up:source unirule:MF_04100 ;
rdf:subject ?pfs52 ;
rdf:predicate up:annotation ;
rdf:object ?annotation53 .
_:952649 a rdf:Statement ;
up:attribution _:952597 ;
rdf:subject ?pfs52 ;
rdf:predicate up:annotation ;
rdf:object ?annotation53 .
_:952650 a rdf:Statement ;
up:source unirule:MF_04100 ;
rdf:subject ?pfs59 ;
rdf:predicate up:annotation ;
rdf:object ?annotation60 .
_:952651 a rdf:Statement ;
up:attribution _:952598 ;
rdf:subject ?pfs59 ;
rdf:predicate up:annotation ;
rdf:object ?annotation60 .
_:952652 a rdf:Statement ;
up:source unirule:MF_04100 ;
rdf:subject ?pfs66 ;
rdf:predicate up:annotation ;
rdf:object ?annotation67 .
_:952653 a rdf:Statement ;
up:attribution _:952599 ;
rdf:subject ?pfs66 ;
rdf:predicate up:annotation ;
rdf:object ?annotation67 .
_:952654 a rdf:Statement ;
up:source unirule:MF_04100 ;
rdf:subject ?pfs73 ;
rdf:predicate up:annotation ;
rdf:object ?annotation74 .
_:952655 a rdf:Statement ;
up:attribution _:952600 ;
rdf:subject ?pfs73 ;
rdf:predicate up:annotation ;
rdf:object ?annotation74 .
_:952656 a rdf:Statement ;
up:source unirule:MF_04100 ;
rdf:subject ?pfs79 ;
rdf:predicate up:annotation ;
rdf:object ?annotation80 .
_:952657 a rdf:Statement ;
up:attribution _:952601 ;
rdf:subject ?pfs79 ;
rdf:predicate up:annotation ;
rdf:object ?annotation80 .
_:952658 a rdf:Statement ;
up:source unirule:MF_04100 ;
rdf:subject ?pfs85 ;
rdf:predicate up:annotation ;
rdf:object ?annotation86 .
_:952659 a rdf:Statement ;
up:attribution _:952602 ;
rdf:subject ?pfs85 ;
rdf:predicate up:annotation ;
rdf:object ?annotation86 .
_:952660 a rdf:Statement ;
up:source unirule:MF_04100 ;
rdf:subject ?pfs91 ;
rdf:predicate up:annotation ;
rdf:object ?annotation92 .
_:952661 a rdf:Statement ;
up:attribution _:952603 ;
rdf:subject ?pfs91 ;
rdf:predicate up:annotation ;
rdf:object ?annotation92 .
_:952662 a rdf:Statement ;
up:source unirule:MF_04100 ;
rdf:subject ?pfs97 ;
rdf:predicate up:annotation ;
rdf:object ?annotation98 .
_:952663 a rdf:Statement ;
up:attribution _:952604 ;
rdf:subject ?pfs97 ;
rdf:predicate up:annotation ;
rdf:object ?annotation98 .
_:952664 a rdf:Statement ;
up:source unirule:MF_04100 ;
rdf:subject ?pfs103 ;
rdf:predicate up:annotation ;
rdf:object ?annotation104 .
_:952665 a rdf:Statement ;
up:attribution _:952605 ;
rdf:subject ?pfs103 ;
rdf:predicate up:annotation ;
rdf:object ?annotation104 .
_:952666 a rdf:Statement ;
up:source unirule:MF_04100 ;
rdf:subject ?pfs109 ;
rdf:predicate up:annotation ;
rdf:object ?annotation110 .
_:952667 a rdf:Statement ;
up:attribution _:952606 ;
rdf:subject ?pfs109 ;
rdf:predicate up:annotation ;
rdf:object ?annotation110 .
_:952668 a rdf:Statement ;
up:source unirule:MF_04100 ;
rdf:subject ?pfs115 ;
rdf:predicate up:annotation ;
rdf:object ?annotation116 .
_:952669 a rdf:Statement ;
up:attribution _:952607 ;
rdf:subject ?pfs115 ;
rdf:predicate up:annotation ;
rdf:object ?annotation116 .
_:952670 a rdf:Statement ;
up:source unirule:MF_04100 ;
rdf:subject ?pfs122 ;
rdf:predicate up:annotation ;
rdf:object ?annotation123 .
_:952671 a rdf:Statement ;
up:attribution _:952608 ;
rdf:subject ?pfs122 ;
rdf:predicate up:annotation ;
rdf:object ?annotation123 .
_:952672 a rdf:Statement ;
up:source unirule:MF_04100 ;
rdf:subject ?pfs129 ;
rdf:predicate up:annotation ;
rdf:object ?annotation130 .
_:952673 a rdf:Statement ;
up:attribution _:952609 ;
rdf:subject ?pfs129 ;
rdf:predicate up:annotation ;
rdf:object ?annotation130 .
_:952674 a rdf:Statement ;
up:source unirule:MF_04100 ;
rdf:subject ?pfs136 ;
rdf:predicate up:annotation ;
rdf:object ?annotation137 .
_:952675 a rdf:Statement ;
up:attribution _:952610 ;
rdf:subject ?pfs136 ;
rdf:predicate up:annotation ;
rdf:object ?annotation137 .
_:952676 a rdf:Statement ;
up:source unirule:MF_04100 ;
rdf:subject ?pfs143 ;
rdf:predicate up:annotation ;
rdf:object ?annotation144 .
_:952677 a rdf:Statement ;
up:attribution _:952611 ;
rdf:subject ?pfs143 ;
rdf:predicate up:annotation ;
rdf:object ?annotation144 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_04100
#Rule MF_04100 Created by:? on:2016-06-28 Modified by:Edouard de Castro on:2024-09-02
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_04100 .
?thisOrganism rdfs:subClassOf+ taxon:2731619 .
BIND(URI(CONCAT(STR(?this), '#MF_04100a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_04100a1')) AS ?annotation1) .
BIND(URI(CONCAT(STR(?this), '#MF_04100a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_04100a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_04100a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_04100a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_04100a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch154 faldo:location ?templateMotifSequenceMatchRegionQ38087155 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ38087157 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ38087MF_04100150 .
?templateMotifSequenceMatchRegionQ38087155 faldo:begin ?templateMotifSequenceMatchBeginQ38087156 .
?templateMotifSequenceMatchBeginQ38087156 faldo:position ?templateMotifSequenceMatchBeginPositionQ38087151 ;
faldo:reference isoform:Q38087-1 .
?templateMotifSequenceProfileAlignmentOperationQ38087157 edam:has_input signature:MF_04100 ;
rdf:type edam:operation_0300 .
?targetMotifMatch158 faldo:location ?targetMotifMatchRegionMatch159 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04100161 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ38087MF_04100152 .
?targetMotifMatchRegionMatch159 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04100160 .
?targetMotifMatchRegionMatchBeginMF_04100160 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04100153 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04100161 edam:has_input signature:MF_04100 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ38087MF_04100150, 1, (STRLEN(?templateMotifCigarQ38087MF_04100150) - STRLEN(REPLACE(?templateMotifCigarQ38087MF_04100150, CONCAT('^(?:-*[^-]){', STR(((414 - ?templateMotifSequenceMatchBeginPositionQ38087151) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1162) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ38087MF_04100152, 1, (STRLEN(?targetMotifMatchCigarQ38087MF_04100152) - STRLEN(REPLACE(?targetMotifMatchCigarQ38087MF_04100152, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1162), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ38087MF_04100152, 1, (STRLEN(?targetMotifMatchCigarQ38087MF_04100152) - STRLEN(REPLACE(?targetMotifMatchCigarQ38087MF_04100152, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1162), '}'), '')))), '[^-]', ''))) AS ?step2163) .
BIND(((?step2163 + ?targetMotifMatchRegionMatchBeginPositionMF_04100153) - 1) AS ?thisPositionOn14) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ38087MF_04100150, 1, (STRLEN(?templateMotifCigarQ38087MF_04100150) - STRLEN(REPLACE(?templateMotifCigarQ38087MF_04100150, CONCAT('^(?:-*[^-]){', STR(((416 - ?templateMotifSequenceMatchBeginPositionQ38087151) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1164) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ38087MF_04100152, 1, (STRLEN(?targetMotifMatchCigarQ38087MF_04100152) - STRLEN(REPLACE(?targetMotifMatchCigarQ38087MF_04100152, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1164), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ38087MF_04100152, 1, (STRLEN(?targetMotifMatchCigarQ38087MF_04100152) - STRLEN(REPLACE(?targetMotifMatchCigarQ38087MF_04100152, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1164), '}'), '')))), '[^-]', ''))) AS ?step2165) .
BIND(((?step2165 + ?targetMotifMatchRegionMatchBeginPositionMF_04100153) - 1) AS ?thisPositionOn15) .
BIND(?this AS ?pfs1t166) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse11) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn14, (?thisPositionOn15 - ?thisPositionOn14)) = 'SLY')) .
BIND(URI(CONCAT(STR(?this), '#MF_04100a9')) AS ?annotation9) .
BIND(?this AS ?pfs8) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch171 faldo:location ?templateMotifSequenceMatchRegionQ38087172 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ38087174 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ38087MF_04100167 .
?templateMotifSequenceMatchRegionQ38087172 faldo:begin ?templateMotifSequenceMatchBeginQ38087173 .
?templateMotifSequenceMatchBeginQ38087173 faldo:position ?templateMotifSequenceMatchBeginPositionQ38087168 ;
faldo:reference isoform:Q38087-1 .
?templateMotifSequenceProfileAlignmentOperationQ38087174 edam:has_input signature:MF_04100 ;
rdf:type edam:operation_0300 .
?targetMotifMatch175 faldo:location ?targetMotifMatchRegionMatch176 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04100178 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ38087MF_04100169 .
?targetMotifMatchRegionMatch176 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04100177 .
?targetMotifMatchRegionMatchBeginMF_04100177 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04100170 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04100178 edam:has_input signature:MF_04100 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ38087MF_04100167, 1, (STRLEN(?templateMotifCigarQ38087MF_04100167) - STRLEN(REPLACE(?templateMotifCigarQ38087MF_04100167, CONCAT('^(?:-*[^-]){', STR(((482 - ?templateMotifSequenceMatchBeginPositionQ38087168) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1179) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ38087MF_04100169, 1, (STRLEN(?targetMotifMatchCigarQ38087MF_04100169) - STRLEN(REPLACE(?targetMotifMatchCigarQ38087MF_04100169, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1179), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ38087MF_04100169, 1, (STRLEN(?targetMotifMatchCigarQ38087MF_04100169) - STRLEN(REPLACE(?targetMotifMatchCigarQ38087MF_04100169, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1179), '}'), '')))), '[^-]', ''))) AS ?step2180) .
BIND(((?step2180 + ?targetMotifMatchRegionMatchBeginPositionMF_04100170) - 1) AS ?thisPositionOn22) .
BIND(?thisPositionOn22 AS ?thisPositionOn23) .
BIND(?this AS ?pfs1t181) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse19) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn22, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_04100a17')) AS ?annotation17) .
BIND(?this AS ?pfs16) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch186 faldo:location ?templateMotifSequenceMatchRegionQ38087187 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ38087189 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ38087MF_04100182 .
?templateMotifSequenceMatchRegionQ38087187 faldo:begin ?templateMotifSequenceMatchBeginQ38087188 .
?templateMotifSequenceMatchBeginQ38087188 faldo:position ?templateMotifSequenceMatchBeginPositionQ38087183 ;
faldo:reference isoform:Q38087-1 .
?templateMotifSequenceProfileAlignmentOperationQ38087189 edam:has_input signature:MF_04100 ;
rdf:type edam:operation_0300 .
?targetMotifMatch190 faldo:location ?targetMotifMatchRegionMatch191 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04100193 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ38087MF_04100184 .
?targetMotifMatchRegionMatch191 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04100192 .
?targetMotifMatchRegionMatchBeginMF_04100192 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04100185 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04100193 edam:has_input signature:MF_04100 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ38087MF_04100182, 1, (STRLEN(?templateMotifCigarQ38087MF_04100182) - STRLEN(REPLACE(?templateMotifCigarQ38087MF_04100182, CONCAT('^(?:-*[^-]){', STR(((560 - ?templateMotifSequenceMatchBeginPositionQ38087183) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1194) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ38087MF_04100184, 1, (STRLEN(?targetMotifMatchCigarQ38087MF_04100184) - STRLEN(REPLACE(?targetMotifMatchCigarQ38087MF_04100184, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1194), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ38087MF_04100184, 1, (STRLEN(?targetMotifMatchCigarQ38087MF_04100184) - STRLEN(REPLACE(?targetMotifMatchCigarQ38087MF_04100184, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1194), '}'), '')))), '[^-]', ''))) AS ?step2195) .
BIND(((?step2195 + ?targetMotifMatchRegionMatchBeginPositionMF_04100185) - 1) AS ?thisPositionOn30) .
BIND(?thisPositionOn30 AS ?thisPositionOn31) .
BIND(?this AS ?pfs1t196) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb26) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse27) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn30, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_04100a25')) AS ?annotation25) .
BIND(?this AS ?pfs24) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch201 faldo:location ?templateMotifSequenceMatchRegionQ38087202 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ38087204 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ38087MF_04100197 .
?templateMotifSequenceMatchRegionQ38087202 faldo:begin ?templateMotifSequenceMatchBeginQ38087203 .
?templateMotifSequenceMatchBeginQ38087203 faldo:position ?templateMotifSequenceMatchBeginPositionQ38087198 ;
faldo:reference isoform:Q38087-1 .
?templateMotifSequenceProfileAlignmentOperationQ38087204 edam:has_input signature:MF_04100 ;
rdf:type edam:operation_0300 .
?targetMotifMatch205 faldo:location ?targetMotifMatchRegionMatch206 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04100208 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ38087MF_04100199 .
?targetMotifMatchRegionMatch206 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04100207 .
?targetMotifMatchRegionMatchBeginMF_04100207 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04100200 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04100208 edam:has_input signature:MF_04100 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ38087MF_04100197, 1, (STRLEN(?templateMotifCigarQ38087MF_04100197) - STRLEN(REPLACE(?templateMotifCigarQ38087MF_04100197, CONCAT('^(?:-*[^-]){', STR(((705 - ?templateMotifSequenceMatchBeginPositionQ38087198) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1209) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ38087MF_04100199, 1, (STRLEN(?targetMotifMatchCigarQ38087MF_04100199) - STRLEN(REPLACE(?targetMotifMatchCigarQ38087MF_04100199, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1209), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ38087MF_04100199, 1, (STRLEN(?targetMotifMatchCigarQ38087MF_04100199) - STRLEN(REPLACE(?targetMotifMatchCigarQ38087MF_04100199, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1209), '}'), '')))), '[^-]', ''))) AS ?step2210) .
BIND(((?step2210 + ?targetMotifMatchRegionMatchBeginPositionMF_04100200) - 1) AS ?thisPositionOn36) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ38087MF_04100197, 1, (STRLEN(?templateMotifCigarQ38087MF_04100197) - STRLEN(REPLACE(?templateMotifCigarQ38087MF_04100197, CONCAT('^(?:-*[^-]){', STR(((708 - ?templateMotifSequenceMatchBeginPositionQ38087198) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1211) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ38087MF_04100199, 1, (STRLEN(?targetMotifMatchCigarQ38087MF_04100199) - STRLEN(REPLACE(?targetMotifMatchCigarQ38087MF_04100199, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1211), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ38087MF_04100199, 1, (STRLEN(?targetMotifMatchCigarQ38087MF_04100199) - STRLEN(REPLACE(?targetMotifMatchCigarQ38087MF_04100199, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1211), '}'), '')))), '[^-]', ''))) AS ?step2212) .
BIND(((?step2212 + ?targetMotifMatchRegionMatchBeginPositionMF_04100200) - 1) AS ?thisPositionOn37) .
BIND(?this AS ?pfs1t213) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfsb34) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfse35) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn36, (?thisPositionOn37 - ?thisPositionOn36)) = 'KKRY')) .
BIND(URI(CONCAT(STR(?this), '#MF_04100a33')) AS ?annotation33) .
BIND(?this AS ?pfs32) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch218 faldo:location ?templateMotifSequenceMatchRegionQ38087219 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ38087221 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ38087MF_04100214 .
?templateMotifSequenceMatchRegionQ38087219 faldo:begin ?templateMotifSequenceMatchBeginQ38087220 .
?templateMotifSequenceMatchBeginQ38087220 faldo:position ?templateMotifSequenceMatchBeginPositionQ38087215 ;
faldo:reference isoform:Q38087-1 .
?templateMotifSequenceProfileAlignmentOperationQ38087221 edam:has_input signature:MF_04100 ;
rdf:type edam:operation_0300 .
?targetMotifMatch222 faldo:location ?targetMotifMatchRegionMatch223 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04100225 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ38087MF_04100216 .
?targetMotifMatchRegionMatch223 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04100224 .
?targetMotifMatchRegionMatchBeginMF_04100224 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04100217 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04100225 edam:has_input signature:MF_04100 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ38087MF_04100214, 1, (STRLEN(?templateMotifCigarQ38087MF_04100214) - STRLEN(REPLACE(?templateMotifCigarQ38087MF_04100214, CONCAT('^(?:-*[^-]){', STR(((411 - ?templateMotifSequenceMatchBeginPositionQ38087215) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1226) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ38087MF_04100216, 1, (STRLEN(?targetMotifMatchCigarQ38087MF_04100216) - STRLEN(REPLACE(?targetMotifMatchCigarQ38087MF_04100216, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1226), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ38087MF_04100216, 1, (STRLEN(?targetMotifMatchCigarQ38087MF_04100216) - STRLEN(REPLACE(?targetMotifMatchCigarQ38087MF_04100216, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1226), '}'), '')))), '[^-]', ''))) AS ?step2227) .
BIND(((?step2227 + ?targetMotifMatchRegionMatchBeginPositionMF_04100217) - 1) AS ?thisPositionOn43) .
BIND(?thisPositionOn43 AS ?thisPositionOn44) .
BIND(?this AS ?pfs1t228) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfsb40) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfse41) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn43, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_04100a39')) AS ?annotation39) .
BIND(?this AS ?pfs38) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch233 faldo:location ?templateMotifSequenceMatchRegionQ38087234 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ38087236 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ38087MF_04100229 .
?templateMotifSequenceMatchRegionQ38087234 faldo:begin ?templateMotifSequenceMatchBeginQ38087235 .
?templateMotifSequenceMatchBeginQ38087235 faldo:position ?templateMotifSequenceMatchBeginPositionQ38087230 ;
faldo:reference isoform:Q38087-1 .
?templateMotifSequenceProfileAlignmentOperationQ38087236 edam:has_input signature:MF_04100 ;
rdf:type edam:operation_0300 .
?targetMotifMatch237 faldo:location ?targetMotifMatchRegionMatch238 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04100240 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ38087MF_04100231 .
?targetMotifMatchRegionMatch238 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04100239 .
?targetMotifMatchRegionMatchBeginMF_04100239 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04100232 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04100240 edam:has_input signature:MF_04100 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ38087MF_04100229, 1, (STRLEN(?templateMotifCigarQ38087MF_04100229) - STRLEN(REPLACE(?templateMotifCigarQ38087MF_04100229, CONCAT('^(?:-*[^-]){', STR(((411 - ?templateMotifSequenceMatchBeginPositionQ38087230) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1241) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ38087MF_04100231, 1, (STRLEN(?targetMotifMatchCigarQ38087MF_04100231) - STRLEN(REPLACE(?targetMotifMatchCigarQ38087MF_04100231, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1241), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ38087MF_04100231, 1, (STRLEN(?targetMotifMatchCigarQ38087MF_04100231) - STRLEN(REPLACE(?targetMotifMatchCigarQ38087MF_04100231, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1241), '}'), '')))), '[^-]', ''))) AS ?step2242) .
BIND(((?step2242 + ?targetMotifMatchRegionMatchBeginPositionMF_04100232) - 1) AS ?thisPositionOn50) .
BIND(?thisPositionOn50 AS ?thisPositionOn51) .
BIND(?this AS ?pfs1t243) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfsb47) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfse48) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn50, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_04100a46')) AS ?annotation46) .
BIND(?this AS ?pfs45) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch248 faldo:location ?templateMotifSequenceMatchRegionQ38087249 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ38087251 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ38087MF_04100244 .
?templateMotifSequenceMatchRegionQ38087249 faldo:begin ?templateMotifSequenceMatchBeginQ38087250 .
?templateMotifSequenceMatchBeginQ38087250 faldo:position ?templateMotifSequenceMatchBeginPositionQ38087245 ;
faldo:reference isoform:Q38087-1 .
?templateMotifSequenceProfileAlignmentOperationQ38087251 edam:has_input signature:MF_04100 ;
rdf:type edam:operation_0300 .
?targetMotifMatch252 faldo:location ?targetMotifMatchRegionMatch253 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04100255 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ38087MF_04100246 .
?targetMotifMatchRegionMatch253 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04100254 .
?targetMotifMatchRegionMatchBeginMF_04100254 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04100247 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04100255 edam:has_input signature:MF_04100 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ38087MF_04100244, 1, (STRLEN(?templateMotifCigarQ38087MF_04100244) - STRLEN(REPLACE(?templateMotifCigarQ38087MF_04100244, CONCAT('^(?:-*[^-]){', STR(((412 - ?templateMotifSequenceMatchBeginPositionQ38087245) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1256) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ38087MF_04100246, 1, (STRLEN(?targetMotifMatchCigarQ38087MF_04100246) - STRLEN(REPLACE(?targetMotifMatchCigarQ38087MF_04100246, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1256), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ38087MF_04100246, 1, (STRLEN(?targetMotifMatchCigarQ38087MF_04100246) - STRLEN(REPLACE(?targetMotifMatchCigarQ38087MF_04100246, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1256), '}'), '')))), '[^-]', ''))) AS ?step2257) .
BIND(((?step2257 + ?targetMotifMatchRegionMatchBeginPositionMF_04100247) - 1) AS ?thisPositionOn57) .
BIND(?thisPositionOn57 AS ?thisPositionOn58) .
BIND(?this AS ?pfs1t258) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfsb54) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfse55) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn57, 1) = 'L')) .
BIND(URI(CONCAT(STR(?this), '#MF_04100a53')) AS ?annotation53) .
BIND(?this AS ?pfs52) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch263 faldo:location ?templateMotifSequenceMatchRegionQ38087264 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ38087266 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ38087MF_04100259 .
?templateMotifSequenceMatchRegionQ38087264 faldo:begin ?templateMotifSequenceMatchBeginQ38087265 .
?templateMotifSequenceMatchBeginQ38087265 faldo:position ?templateMotifSequenceMatchBeginPositionQ38087260 ;
faldo:reference isoform:Q38087-1 .
?templateMotifSequenceProfileAlignmentOperationQ38087266 edam:has_input signature:MF_04100 ;
rdf:type edam:operation_0300 .
?targetMotifMatch267 faldo:location ?targetMotifMatchRegionMatch268 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04100270 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ38087MF_04100261 .
?targetMotifMatchRegionMatch268 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04100269 .
?targetMotifMatchRegionMatchBeginMF_04100269 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04100262 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04100270 edam:has_input signature:MF_04100 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ38087MF_04100259, 1, (STRLEN(?templateMotifCigarQ38087MF_04100259) - STRLEN(REPLACE(?templateMotifCigarQ38087MF_04100259, CONCAT('^(?:-*[^-]){', STR(((623 - ?templateMotifSequenceMatchBeginPositionQ38087260) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1271) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ38087MF_04100261, 1, (STRLEN(?targetMotifMatchCigarQ38087MF_04100261) - STRLEN(REPLACE(?targetMotifMatchCigarQ38087MF_04100261, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1271), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ38087MF_04100261, 1, (STRLEN(?targetMotifMatchCigarQ38087MF_04100261) - STRLEN(REPLACE(?targetMotifMatchCigarQ38087MF_04100261, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1271), '}'), '')))), '[^-]', ''))) AS ?step2272) .
BIND(((?step2272 + ?targetMotifMatchRegionMatchBeginPositionMF_04100262) - 1) AS ?thisPositionOn64) .
BIND(?thisPositionOn64 AS ?thisPositionOn65) .
BIND(?this AS ?pfs1t273) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfsb61) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn65))) AS ?pfse62) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn64, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_04100a60')) AS ?annotation60) .
BIND(?this AS ?pfs59) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch278 faldo:location ?templateMotifSequenceMatchRegionQ38087279 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ38087281 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ38087MF_04100274 .
?templateMotifSequenceMatchRegionQ38087279 faldo:begin ?templateMotifSequenceMatchBeginQ38087280 .
?templateMotifSequenceMatchBeginQ38087280 faldo:position ?templateMotifSequenceMatchBeginPositionQ38087275 ;
faldo:reference isoform:Q38087-1 .
?templateMotifSequenceProfileAlignmentOperationQ38087281 edam:has_input signature:MF_04100 ;
rdf:type edam:operation_0300 .
?targetMotifMatch282 faldo:location ?targetMotifMatchRegionMatch283 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04100285 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ38087MF_04100276 .
?targetMotifMatchRegionMatch283 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04100284 .
?targetMotifMatchRegionMatchBeginMF_04100284 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04100277 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04100285 edam:has_input signature:MF_04100 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ38087MF_04100274, 1, (STRLEN(?templateMotifCigarQ38087MF_04100274) - STRLEN(REPLACE(?templateMotifCigarQ38087MF_04100274, CONCAT('^(?:-*[^-]){', STR(((623 - ?templateMotifSequenceMatchBeginPositionQ38087275) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1286) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ38087MF_04100276, 1, (STRLEN(?targetMotifMatchCigarQ38087MF_04100276) - STRLEN(REPLACE(?targetMotifMatchCigarQ38087MF_04100276, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1286), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ38087MF_04100276, 1, (STRLEN(?targetMotifMatchCigarQ38087MF_04100276) - STRLEN(REPLACE(?targetMotifMatchCigarQ38087MF_04100276, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1286), '}'), '')))), '[^-]', ''))) AS ?step2287) .
BIND(((?step2287 + ?targetMotifMatchRegionMatchBeginPositionMF_04100277) - 1) AS ?thisPositionOn71) .
BIND(?thisPositionOn71 AS ?thisPositionOn72) .
BIND(?this AS ?pfs1t288) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn71))) AS ?pfsb68) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn72))) AS ?pfse69) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn71, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_04100a67')) AS ?annotation67) .
BIND(?this AS ?pfs66) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch293 faldo:location ?templateMotifSequenceMatchRegionQ38087294 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ38087296 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ38087MF_04100289 .
?templateMotifSequenceMatchRegionQ38087294 faldo:begin ?templateMotifSequenceMatchBeginQ38087295 .
?templateMotifSequenceMatchBeginQ38087295 faldo:position ?templateMotifSequenceMatchBeginPositionQ38087290 ;
faldo:reference isoform:Q38087-1 .
?templateMotifSequenceProfileAlignmentOperationQ38087296 edam:has_input signature:MF_04100 ;
rdf:type edam:operation_0300 .
?targetMotifMatch297 faldo:location ?targetMotifMatchRegionMatch298 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04100300 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ38087MF_04100291 .
?targetMotifMatchRegionMatch298 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04100299 .
?targetMotifMatchRegionMatchBeginMF_04100299 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04100292 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04100300 edam:has_input signature:MF_04100 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ38087MF_04100289, 1, (STRLEN(?templateMotifCigarQ38087MF_04100289) - STRLEN(REPLACE(?templateMotifCigarQ38087MF_04100289, CONCAT('^(?:-*[^-]){', STR(((621 - ?templateMotifSequenceMatchBeginPositionQ38087290) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1301) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ38087MF_04100291, 1, (STRLEN(?targetMotifMatchCigarQ38087MF_04100291) - STRLEN(REPLACE(?targetMotifMatchCigarQ38087MF_04100291, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1301), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ38087MF_04100291, 1, (STRLEN(?targetMotifMatchCigarQ38087MF_04100291) - STRLEN(REPLACE(?targetMotifMatchCigarQ38087MF_04100291, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1301), '}'), '')))), '[^-]', ''))) AS ?step2302) .
BIND(((?step2302 + ?targetMotifMatchRegionMatchBeginPositionMF_04100292) - 1) AS ?thisPositionOn77) .
BIND(?thisPositionOn77 AS ?thisPositionOn78) .
BIND(?this AS ?pfs1t303) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn77))) AS ?pfsb75) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn78))) AS ?pfse76) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn77, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_04100a74')) AS ?annotation74) .
BIND(?this AS ?pfs73) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch308 faldo:location ?templateMotifSequenceMatchRegionQ38087309 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ38087311 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ38087MF_04100304 .
?templateMotifSequenceMatchRegionQ38087309 faldo:begin ?templateMotifSequenceMatchBeginQ38087310 .
?templateMotifSequenceMatchBeginQ38087310 faldo:position ?templateMotifSequenceMatchBeginPositionQ38087305 ;
faldo:reference isoform:Q38087-1 .
?templateMotifSequenceProfileAlignmentOperationQ38087311 edam:has_input signature:MF_04100 ;
rdf:type edam:operation_0300 .
?targetMotifMatch312 faldo:location ?targetMotifMatchRegionMatch313 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04100315 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ38087MF_04100306 .
?targetMotifMatchRegionMatch313 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04100314 .
?targetMotifMatchRegionMatchBeginMF_04100314 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04100307 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04100315 edam:has_input signature:MF_04100 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ38087MF_04100304, 1, (STRLEN(?templateMotifCigarQ38087MF_04100304) - STRLEN(REPLACE(?templateMotifCigarQ38087MF_04100304, CONCAT('^(?:-*[^-]){', STR(((706 - ?templateMotifSequenceMatchBeginPositionQ38087305) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1316) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ38087MF_04100306, 1, (STRLEN(?targetMotifMatchCigarQ38087MF_04100306) - STRLEN(REPLACE(?targetMotifMatchCigarQ38087MF_04100306, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1316), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ38087MF_04100306, 1, (STRLEN(?targetMotifMatchCigarQ38087MF_04100306) - STRLEN(REPLACE(?targetMotifMatchCigarQ38087MF_04100306, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1316), '}'), '')))), '[^-]', ''))) AS ?step2317) .
BIND(((?step2317 + ?targetMotifMatchRegionMatchBeginPositionMF_04100307) - 1) AS ?thisPositionOn83) .
BIND(?thisPositionOn83 AS ?thisPositionOn84) .
BIND(?this AS ?pfs1t318) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn83))) AS ?pfsb81) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn84))) AS ?pfse82) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn83, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_04100a80')) AS ?annotation80) .
BIND(?this AS ?pfs79) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch323 faldo:location ?templateMotifSequenceMatchRegionQ38087324 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ38087326 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ38087MF_04100319 .
?templateMotifSequenceMatchRegionQ38087324 faldo:begin ?templateMotifSequenceMatchBeginQ38087325 .
?templateMotifSequenceMatchBeginQ38087325 faldo:position ?templateMotifSequenceMatchBeginPositionQ38087320 ;
faldo:reference isoform:Q38087-1 .
?templateMotifSequenceProfileAlignmentOperationQ38087326 edam:has_input signature:MF_04100 ;
rdf:type edam:operation_0300 .
?targetMotifMatch327 faldo:location ?targetMotifMatchRegionMatch328 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04100330 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ38087MF_04100321 .
?targetMotifMatchRegionMatch328 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04100329 .
?targetMotifMatchRegionMatchBeginMF_04100329 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04100322 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04100330 edam:has_input signature:MF_04100 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ38087MF_04100319, 1, (STRLEN(?templateMotifCigarQ38087MF_04100319) - STRLEN(REPLACE(?templateMotifCigarQ38087MF_04100319, CONCAT('^(?:-*[^-]){', STR(((714 - ?templateMotifSequenceMatchBeginPositionQ38087320) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1331) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ38087MF_04100321, 1, (STRLEN(?targetMotifMatchCigarQ38087MF_04100321) - STRLEN(REPLACE(?targetMotifMatchCigarQ38087MF_04100321, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1331), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ38087MF_04100321, 1, (STRLEN(?targetMotifMatchCigarQ38087MF_04100321) - STRLEN(REPLACE(?targetMotifMatchCigarQ38087MF_04100321, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1331), '}'), '')))), '[^-]', ''))) AS ?step2332) .
BIND(((?step2332 + ?targetMotifMatchRegionMatchBeginPositionMF_04100322) - 1) AS ?thisPositionOn89) .
BIND(?thisPositionOn89 AS ?thisPositionOn90) .
BIND(?this AS ?pfs1t333) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn89))) AS ?pfsb87) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn90))) AS ?pfse88) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn89, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_04100a86')) AS ?annotation86) .
BIND(?this AS ?pfs85) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch338 faldo:location ?templateMotifSequenceMatchRegionP04415339 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP04415341 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04415MF_04100334 .
?templateMotifSequenceMatchRegionP04415339 faldo:begin ?templateMotifSequenceMatchBeginP04415340 .
?templateMotifSequenceMatchBeginP04415340 faldo:position ?templateMotifSequenceMatchBeginPositionP04415335 ;
faldo:reference isoform:P04415-1 .
?templateMotifSequenceProfileAlignmentOperationP04415341 edam:has_input signature:MF_04100 ;
rdf:type edam:operation_0300 .
?targetMotifMatch342 faldo:location ?targetMotifMatchRegionMatch343 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04100345 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04415MF_04100336 .
?targetMotifMatchRegionMatch343 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04100344 .
?targetMotifMatchRegionMatchBeginMF_04100344 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04100337 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04100345 edam:has_input signature:MF_04100 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04415MF_04100334, 1, (STRLEN(?templateMotifCigarP04415MF_04100334) - STRLEN(REPLACE(?templateMotifCigarP04415MF_04100334, CONCAT('^(?:-*[^-]){', STR(((101 - ?templateMotifSequenceMatchBeginPositionP04415335) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1346) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04415MF_04100336, 1, (STRLEN(?targetMotifMatchCigarP04415MF_04100336) - STRLEN(REPLACE(?targetMotifMatchCigarP04415MF_04100336, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1346), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04415MF_04100336, 1, (STRLEN(?targetMotifMatchCigarP04415MF_04100336) - STRLEN(REPLACE(?targetMotifMatchCigarP04415MF_04100336, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1346), '}'), '')))), '[^-]', ''))) AS ?step2347) .
BIND(((?step2347 + ?targetMotifMatchRegionMatchBeginPositionMF_04100337) - 1) AS ?thisPositionOn95) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04415MF_04100334, 1, (STRLEN(?templateMotifCigarP04415MF_04100334) - STRLEN(REPLACE(?templateMotifCigarP04415MF_04100334, CONCAT('^(?:-*[^-]){', STR(((337 - ?templateMotifSequenceMatchBeginPositionP04415335) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1348) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04415MF_04100336, 1, (STRLEN(?targetMotifMatchCigarP04415MF_04100336) - STRLEN(REPLACE(?targetMotifMatchCigarP04415MF_04100336, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1348), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04415MF_04100336, 1, (STRLEN(?targetMotifMatchCigarP04415MF_04100336) - STRLEN(REPLACE(?targetMotifMatchCigarP04415MF_04100336, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1348), '}'), '')))), '[^-]', ''))) AS ?step2349) .
BIND(((?step2349 + ?targetMotifMatchRegionMatchBeginPositionMF_04100337) - 1) AS ?thisPositionOn96) .
BIND(?this AS ?pfs2t350) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn95))) AS ?pfsb93) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn96))) AS ?pfse94) .
FILTER ((BOUND(?thisPositionOn95) && BOUND(?thisPositionOn96))) .
BIND(URI(CONCAT(STR(?this), '#MF_04100a92')) AS ?annotation92) .
BIND(?this AS ?pfs91) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch355 faldo:location ?templateMotifSequenceMatchRegionP04415356 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP04415358 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04415MF_04100351 .
?templateMotifSequenceMatchRegionP04415356 faldo:begin ?templateMotifSequenceMatchBeginP04415357 .
?templateMotifSequenceMatchBeginP04415357 faldo:position ?templateMotifSequenceMatchBeginPositionP04415352 ;
faldo:reference isoform:P04415-1 .
?templateMotifSequenceProfileAlignmentOperationP04415358 edam:has_input signature:MF_04100 ;
rdf:type edam:operation_0300 .
?targetMotifMatch359 faldo:location ?targetMotifMatchRegionMatch360 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04100362 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04415MF_04100353 .
?targetMotifMatchRegionMatch360 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04100361 .
?targetMotifMatchRegionMatchBeginMF_04100361 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04100354 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04100362 edam:has_input signature:MF_04100 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04415MF_04100351, 1, (STRLEN(?templateMotifCigarP04415MF_04100351) - STRLEN(REPLACE(?templateMotifCigarP04415MF_04100351, CONCAT('^(?:-*[^-]){', STR(((245 - ?templateMotifSequenceMatchBeginPositionP04415352) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1363) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04415MF_04100353, 1, (STRLEN(?targetMotifMatchCigarP04415MF_04100353) - STRLEN(REPLACE(?targetMotifMatchCigarP04415MF_04100353, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1363), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04415MF_04100353, 1, (STRLEN(?targetMotifMatchCigarP04415MF_04100353) - STRLEN(REPLACE(?targetMotifMatchCigarP04415MF_04100353, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1363), '}'), '')))), '[^-]', ''))) AS ?step2364) .
BIND(((?step2364 + ?targetMotifMatchRegionMatchBeginPositionMF_04100354) - 1) AS ?thisPositionOn101) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04415MF_04100351, 1, (STRLEN(?templateMotifCigarP04415MF_04100351) - STRLEN(REPLACE(?templateMotifCigarP04415MF_04100351, CONCAT('^(?:-*[^-]){', STR(((261 - ?templateMotifSequenceMatchBeginPositionP04415352) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1365) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04415MF_04100353, 1, (STRLEN(?targetMotifMatchCigarP04415MF_04100353) - STRLEN(REPLACE(?targetMotifMatchCigarP04415MF_04100353, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1365), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04415MF_04100353, 1, (STRLEN(?targetMotifMatchCigarP04415MF_04100353) - STRLEN(REPLACE(?targetMotifMatchCigarP04415MF_04100353, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1365), '}'), '')))), '[^-]', ''))) AS ?step2366) .
BIND(((?step2366 + ?targetMotifMatchRegionMatchBeginPositionMF_04100354) - 1) AS ?thisPositionOn102) .
BIND(?this AS ?pfs2t367) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn101))) AS ?pfsb99) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn102))) AS ?pfse100) .
FILTER ((BOUND(?thisPositionOn101) && BOUND(?thisPositionOn102))) .
BIND(URI(CONCAT(STR(?this), '#MF_04100a98')) AS ?annotation98) .
BIND(?this AS ?pfs97) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch372 faldo:location ?templateMotifSequenceMatchRegionP04415373 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP04415375 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04415MF_04100368 .
?templateMotifSequenceMatchRegionP04415373 faldo:begin ?templateMotifSequenceMatchBeginP04415374 .
?templateMotifSequenceMatchBeginP04415374 faldo:position ?templateMotifSequenceMatchBeginPositionP04415369 ;
faldo:reference isoform:P04415-1 .
?templateMotifSequenceProfileAlignmentOperationP04415375 edam:has_input signature:MF_04100 ;
rdf:type edam:operation_0300 .
?targetMotifMatch376 faldo:location ?targetMotifMatchRegionMatch377 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04100379 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04415MF_04100370 .
?targetMotifMatchRegionMatch377 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04100378 .
?targetMotifMatchRegionMatchBeginMF_04100378 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04100371 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04100379 edam:has_input signature:MF_04100 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04415MF_04100368, 1, (STRLEN(?templateMotifCigarP04415MF_04100368) - STRLEN(REPLACE(?templateMotifCigarP04415MF_04100368, CONCAT('^(?:-*[^-]){', STR(((377 - ?templateMotifSequenceMatchBeginPositionP04415369) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1380) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04415MF_04100370, 1, (STRLEN(?targetMotifMatchCigarP04415MF_04100370) - STRLEN(REPLACE(?targetMotifMatchCigarP04415MF_04100370, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1380), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04415MF_04100370, 1, (STRLEN(?targetMotifMatchCigarP04415MF_04100370) - STRLEN(REPLACE(?targetMotifMatchCigarP04415MF_04100370, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1380), '}'), '')))), '[^-]', ''))) AS ?step2381) .
BIND(((?step2381 + ?targetMotifMatchRegionMatchBeginPositionMF_04100371) - 1) AS ?thisPositionOn107) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn108) .
BIND(?this AS ?pfs2t382) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn107))) AS ?pfsb105) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn108))) AS ?pfse106) .
FILTER ((BOUND(?thisPositionOn107) && BOUND(?thisPositionOn108))) .
BIND(URI(CONCAT(STR(?this), '#MF_04100a104')) AS ?annotation104) .
BIND(?this AS ?pfs103) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch387 faldo:location ?templateMotifSequenceMatchRegionP04415388 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP04415390 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04415MF_04100383 .
?templateMotifSequenceMatchRegionP04415388 faldo:begin ?templateMotifSequenceMatchBeginP04415389 .
?templateMotifSequenceMatchBeginP04415389 faldo:position ?templateMotifSequenceMatchBeginPositionP04415384 ;
faldo:reference isoform:P04415-1 .
?templateMotifSequenceProfileAlignmentOperationP04415390 edam:has_input signature:MF_04100 ;
rdf:type edam:operation_0300 .
?targetMotifMatch391 faldo:location ?targetMotifMatchRegionMatch392 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04100394 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04415MF_04100385 .
?targetMotifMatchRegionMatch392 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04100393 .
?targetMotifMatchRegionMatchBeginMF_04100393 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04100386 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04100394 edam:has_input signature:MF_04100 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04415MF_04100383, 1, (STRLEN(?templateMotifCigarP04415MF_04100383) - STRLEN(REPLACE(?templateMotifCigarP04415MF_04100383, CONCAT('^(?:-*[^-]){', STR(((893 - ?templateMotifSequenceMatchBeginPositionP04415384) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1395) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04415MF_04100385, 1, (STRLEN(?targetMotifMatchCigarP04415MF_04100385) - STRLEN(REPLACE(?targetMotifMatchCigarP04415MF_04100385, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1395), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04415MF_04100385, 1, (STRLEN(?targetMotifMatchCigarP04415MF_04100385) - STRLEN(REPLACE(?targetMotifMatchCigarP04415MF_04100385, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1395), '}'), '')))), '[^-]', ''))) AS ?step2396) .
BIND(((?step2396 + ?targetMotifMatchRegionMatchBeginPositionMF_04100386) - 1) AS ?thisPositionOn113) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn114) .
BIND(?this AS ?pfs2t397) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn113))) AS ?pfsb111) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn114))) AS ?pfse112) .
FILTER ((BOUND(?thisPositionOn113) && BOUND(?thisPositionOn114))) .
BIND(URI(CONCAT(STR(?this), '#MF_04100a110')) AS ?annotation110) .
BIND(?this AS ?pfs109) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch402 faldo:location ?templateMotifSequenceMatchRegionP04415403 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP04415405 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04415MF_04100398 .
?templateMotifSequenceMatchRegionP04415403 faldo:begin ?templateMotifSequenceMatchBeginP04415404 .
?templateMotifSequenceMatchBeginP04415404 faldo:position ?templateMotifSequenceMatchBeginPositionP04415399 ;
faldo:reference isoform:P04415-1 .
?templateMotifSequenceProfileAlignmentOperationP04415405 edam:has_input signature:MF_04100 ;
rdf:type edam:operation_0300 .
?targetMotifMatch406 faldo:location ?targetMotifMatchRegionMatch407 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04100409 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04415MF_04100400 .
?targetMotifMatchRegionMatch407 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04100408 .
?targetMotifMatchRegionMatchBeginMF_04100408 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04100401 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04100409 edam:has_input signature:MF_04100 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04415MF_04100398, 1, (STRLEN(?templateMotifCigarP04415MF_04100398) - STRLEN(REPLACE(?templateMotifCigarP04415MF_04100398, CONCAT('^(?:-*[^-]){', STR(((112 - ?templateMotifSequenceMatchBeginPositionP04415399) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1410) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04415MF_04100400, 1, (STRLEN(?targetMotifMatchCigarP04415MF_04100400) - STRLEN(REPLACE(?targetMotifMatchCigarP04415MF_04100400, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1410), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04415MF_04100400, 1, (STRLEN(?targetMotifMatchCigarP04415MF_04100400) - STRLEN(REPLACE(?targetMotifMatchCigarP04415MF_04100400, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1410), '}'), '')))), '[^-]', ''))) AS ?step2411) .
BIND(((?step2411 + ?targetMotifMatchRegionMatchBeginPositionMF_04100401) - 1) AS ?thisPositionOn120) .
BIND(?thisPositionOn120 AS ?thisPositionOn121) .
BIND(?this AS ?pfs2t412) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn120))) AS ?pfsb117) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn121))) AS ?pfse118) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn120, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_04100a116')) AS ?annotation116) .
BIND(?this AS ?pfs115) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch417 faldo:location ?templateMotifSequenceMatchRegionP04415418 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP04415420 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04415MF_04100413 .
?templateMotifSequenceMatchRegionP04415418 faldo:begin ?templateMotifSequenceMatchBeginP04415419 .
?templateMotifSequenceMatchBeginP04415419 faldo:position ?templateMotifSequenceMatchBeginPositionP04415414 ;
faldo:reference isoform:P04415-1 .
?templateMotifSequenceProfileAlignmentOperationP04415420 edam:has_input signature:MF_04100 ;
rdf:type edam:operation_0300 .
?targetMotifMatch421 faldo:location ?targetMotifMatchRegionMatch422 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04100424 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04415MF_04100415 .
?targetMotifMatchRegionMatch422 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04100423 .
?targetMotifMatchRegionMatchBeginMF_04100423 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04100416 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04100424 edam:has_input signature:MF_04100 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04415MF_04100413, 1, (STRLEN(?templateMotifCigarP04415MF_04100413) - STRLEN(REPLACE(?templateMotifCigarP04415MF_04100413, CONCAT('^(?:-*[^-]){', STR(((114 - ?templateMotifSequenceMatchBeginPositionP04415414) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1425) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04415MF_04100415, 1, (STRLEN(?targetMotifMatchCigarP04415MF_04100415) - STRLEN(REPLACE(?targetMotifMatchCigarP04415MF_04100415, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1425), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04415MF_04100415, 1, (STRLEN(?targetMotifMatchCigarP04415MF_04100415) - STRLEN(REPLACE(?targetMotifMatchCigarP04415MF_04100415, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1425), '}'), '')))), '[^-]', ''))) AS ?step2426) .
BIND(((?step2426 + ?targetMotifMatchRegionMatchBeginPositionMF_04100416) - 1) AS ?thisPositionOn127) .
BIND(?thisPositionOn127 AS ?thisPositionOn128) .
BIND(?this AS ?pfs2t427) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn127))) AS ?pfsb124) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn128))) AS ?pfse125) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn127, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_04100a123')) AS ?annotation123) .
BIND(?this AS ?pfs122) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch432 faldo:location ?templateMotifSequenceMatchRegionP04415433 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP04415435 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04415MF_04100428 .
?templateMotifSequenceMatchRegionP04415433 faldo:begin ?templateMotifSequenceMatchBeginP04415434 .
?templateMotifSequenceMatchBeginP04415434 faldo:position ?templateMotifSequenceMatchBeginPositionP04415429 ;
faldo:reference isoform:P04415-1 .
?templateMotifSequenceProfileAlignmentOperationP04415435 edam:has_input signature:MF_04100 ;
rdf:type edam:operation_0300 .
?targetMotifMatch436 faldo:location ?targetMotifMatchRegionMatch437 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04100439 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04415MF_04100430 .
?targetMotifMatchRegionMatch437 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04100438 .
?targetMotifMatchRegionMatchBeginMF_04100438 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04100431 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04100439 edam:has_input signature:MF_04100 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04415MF_04100428, 1, (STRLEN(?templateMotifCigarP04415MF_04100428) - STRLEN(REPLACE(?templateMotifCigarP04415MF_04100428, CONCAT('^(?:-*[^-]){', STR(((219 - ?templateMotifSequenceMatchBeginPositionP04415429) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1440) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04415MF_04100430, 1, (STRLEN(?targetMotifMatchCigarP04415MF_04100430) - STRLEN(REPLACE(?targetMotifMatchCigarP04415MF_04100430, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1440), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04415MF_04100430, 1, (STRLEN(?targetMotifMatchCigarP04415MF_04100430) - STRLEN(REPLACE(?targetMotifMatchCigarP04415MF_04100430, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1440), '}'), '')))), '[^-]', ''))) AS ?step2441) .
BIND(((?step2441 + ?targetMotifMatchRegionMatchBeginPositionMF_04100431) - 1) AS ?thisPositionOn134) .
BIND(?thisPositionOn134 AS ?thisPositionOn135) .
BIND(?this AS ?pfs2t442) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn134))) AS ?pfsb131) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn135))) AS ?pfse132) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn134, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_04100a130')) AS ?annotation130) .
BIND(?this AS ?pfs129) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch447 faldo:location ?templateMotifSequenceMatchRegionP04415448 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP04415450 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04415MF_04100443 .
?templateMotifSequenceMatchRegionP04415448 faldo:begin ?templateMotifSequenceMatchBeginP04415449 .
?templateMotifSequenceMatchBeginP04415449 faldo:position ?templateMotifSequenceMatchBeginPositionP04415444 ;
faldo:reference isoform:P04415-1 .
?templateMotifSequenceProfileAlignmentOperationP04415450 edam:has_input signature:MF_04100 ;
rdf:type edam:operation_0300 .
?targetMotifMatch451 faldo:location ?targetMotifMatchRegionMatch452 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04100454 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04415MF_04100445 .
?targetMotifMatchRegionMatch452 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04100453 .
?targetMotifMatchRegionMatchBeginMF_04100453 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04100446 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04100454 edam:has_input signature:MF_04100 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04415MF_04100443, 1, (STRLEN(?templateMotifCigarP04415MF_04100443) - STRLEN(REPLACE(?templateMotifCigarP04415MF_04100443, CONCAT('^(?:-*[^-]){', STR(((324 - ?templateMotifSequenceMatchBeginPositionP04415444) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1455) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04415MF_04100445, 1, (STRLEN(?targetMotifMatchCigarP04415MF_04100445) - STRLEN(REPLACE(?targetMotifMatchCigarP04415MF_04100445, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1455), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04415MF_04100445, 1, (STRLEN(?targetMotifMatchCigarP04415MF_04100445) - STRLEN(REPLACE(?targetMotifMatchCigarP04415MF_04100445, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1455), '}'), '')))), '[^-]', ''))) AS ?step2456) .
BIND(((?step2456 + ?targetMotifMatchRegionMatchBeginPositionMF_04100446) - 1) AS ?thisPositionOn141) .
BIND(?thisPositionOn141 AS ?thisPositionOn142) .
BIND(?this AS ?pfs2t457) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn141))) AS ?pfsb138) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn142))) AS ?pfse139) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn141, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_04100a137')) AS ?annotation137) .
BIND(?this AS ?pfs136) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch462 faldo:location ?templateMotifSequenceMatchRegionP04415463 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP04415465 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04415MF_04100458 .
?templateMotifSequenceMatchRegionP04415463 faldo:begin ?templateMotifSequenceMatchBeginP04415464 .
?templateMotifSequenceMatchBeginP04415464 faldo:position ?templateMotifSequenceMatchBeginPositionP04415459 ;
faldo:reference isoform:P04415-1 .
?templateMotifSequenceProfileAlignmentOperationP04415465 edam:has_input signature:MF_04100 ;
rdf:type edam:operation_0300 .
?targetMotifMatch466 faldo:location ?targetMotifMatchRegionMatch467 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04100469 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04415MF_04100460 .
?targetMotifMatchRegionMatch467 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04100468 .
?targetMotifMatchRegionMatchBeginMF_04100468 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04100461 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04100469 edam:has_input signature:MF_04100 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04415MF_04100458, 1, (STRLEN(?templateMotifCigarP04415MF_04100458) - STRLEN(REPLACE(?templateMotifCigarP04415MF_04100458, CONCAT('^(?:-*[^-]){', STR(((324 - ?templateMotifSequenceMatchBeginPositionP04415459) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1470) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04415MF_04100460, 1, (STRLEN(?targetMotifMatchCigarP04415MF_04100460) - STRLEN(REPLACE(?targetMotifMatchCigarP04415MF_04100460, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1470), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04415MF_04100460, 1, (STRLEN(?targetMotifMatchCigarP04415MF_04100460) - STRLEN(REPLACE(?targetMotifMatchCigarP04415MF_04100460, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1470), '}'), '')))), '[^-]', ''))) AS ?step2471) .
BIND(((?step2471 + ?targetMotifMatchRegionMatchBeginPositionMF_04100461) - 1) AS ?thisPositionOn148) .
BIND(?thisPositionOn148 AS ?thisPositionOn149) .
BIND(?this AS ?pfs2t472) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn148))) AS ?pfsb145) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn149))) AS ?pfse146) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn148, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_04100a144')) AS ?annotation144) .
BIND(?this AS ?pfs143) .
}
}
"xsd:string |
