| http://purl.uniprot.org/unirules/MF_00458#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:183275 up:source unirule:MF_00458 .
_:183276 up:source unirule:MF_00458 .
_:183277 up:source unirule:MF_00458 .
_:183278 up:source unirule:MF_00458 .
_:183279 up:source unirule:MF_00458 .
_:183280 up:source unirule:MF_00458 .
_:183281 up:source unirule:MF_00458 .
_:183282 up:source unirule:MF_00458 .
_:183283 up:source unirule:MF_00458 .
_:183284 up:source unirule:MF_00458 .
_:183285 up:source unirule:MF_00458 .
_:183286 up:source unirule:MF_00458 .
_:183287 up:source unirule:MF_00458 .
_:183288 up:source unirule:MF_00458 .
_:183289 up:source unirule:MF_00458 .
_:183290 up:source unirule:MF_00458 .
_:183291 up:source unirule:MF_00458 .
_:183292 up:source unirule:MF_00458 .
_:183293 up:source unirule:MF_00458 .
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_:183295 up:source unirule:MF_00458 .
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_:183297 up:source unirule:MF_00458 .
_:183298 up:source unirule:MF_00458 .
_:183299 up:source unirule:MF_00458 .
_:183300 up:source unirule:MF_00458 .
_:183301 up:source unirule:MF_00458 .
_:183302 up:source unirule:MF_00458 .
_:183303 up:source unirule:MF_00458 .
_:183304 up:source unirule:MF_00458 .
_:183305 up:source unirule:MF_00458 .
_:183306 up:source unirule:MF_00458 .
_:183307 up:source unirule:MF_00458 .
_:183308 up:source unirule:MF_00458 .
_:183309 up:source unirule:MF_00458 .
_:183310 up:source unirule:MF_00458 .
_:183311 up:source unirule:MF_00458 .
_:183312 up:source unirule:MF_00458 .
_:183313 up:source unirule:MF_00458 .
_:183314 up:source unirule:MF_00458 .
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_:183317 up:source unirule:MF_00458 .
_:183318 up:source unirule:MF_00458 .
_:183319 up:source unirule:MF_00458 .
_:183320 up:source unirule:MF_00458 .
_:183321 up:source unirule:MF_00458 .
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_:183324 up:source unirule:MF_00458 .
_:183325 up:source unirule:MF_00458 .
_:183326 up:source unirule:MF_00458 .
?this up:annotation ?annotation1 ,
?annotation3 ;
up:classifiedWith GO:0000287 ,
GO:0009055 ,
GO:0015979 ,
keyword:1133 ,
keyword:148 ,
keyword:157 ,
keyword:249 ,
keyword:408 ,
keyword:411 ,
keyword:460 ,
keyword:472 ,
keyword:479 ,
keyword:4 ,
keyword:560 ,
keyword:602 ,
keyword:603 ,
keyword:812 ,
keyword:813 .
?gene0 skos:prefLabel 'psaA' .
?annotation1 up:activity ?activity2 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity2 up:catalyticActivity ;
up:enzymeClass .
?annotation3 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the PsaA/PsaB family.' .
?case4 up:alternativeName ?name6 ,
?name7 ;
up:classifiedWith GO:0009535 ;
up:recommendedName ?name5 .
?name5 up:ecName '1.97.1.12' ;
up:fullName 'Photosystem I P700 chlorophyll a apoprotein A1' ;
rdf:type up:Structured_Name .
?name6 up:fullName 'PSI-A' ;
rdf:type up:Structured_Name .
?name7 up:fullName 'PsaA' ;
rdf:type up:Structured_Name .
?case8 up:alternativeName ?name10 ;
up:recommendedName ?name9 .
?name9 up:ecName '1.97.1.12' ;
up:fullName 'Photosystem I P700 chlorophyll a apoprotein A1' ;
rdf:type up:Structured_Name .
?name10 up:fullName 'PsaA' ;
rdf:type up:Structured_Name .
?case11 up:classifiedWith keyword:1003 ,
keyword:997 .
?case13 up:classifiedWith keyword:793 .
?case15 up:classifiedWith GO:0005886 .
?case17 up:classifiedWith GO:0042651 .
?pfs20 up:annotation ?annotation21 .
?annotation21 faldo:begin ?pfsb22 ;
faldo:end ?pfse23 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical; Name=I' .
?pfsb22 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfse23 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?pfs26 up:annotation ?annotation27 .
?annotation27 faldo:begin ?pfsb28 ;
faldo:end ?pfse29 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical; Name=II' .
?pfsb28 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?pfse29 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?pfs32 up:annotation ?annotation33 .
?annotation33 faldo:begin ?pfsb34 ;
faldo:end ?pfse35 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical; Name=III' .
?pfsb34 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?pfse35 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?pfs38 up:annotation ?annotation39 .
?annotation39 faldo:begin ?pfsb40 ;
faldo:end ?pfse41 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical; Name=IV' .
?pfsb40 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?pfse41 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?pfs44 up:annotation ?annotation45 .
?annotation45 faldo:begin ?pfsb46 ;
faldo:end ?pfse47 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical; Name=V' .
?pfsb46 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?pfse47 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?pfs50 up:annotation ?annotation51 .
?annotation51 faldo:begin ?pfsb52 ;
faldo:end ?pfse53 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical; Name=VI' .
?pfsb52 faldo:position ?thisPositionOn54 ;
rdf:type faldo:ExactPosition .
?pfse53 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
?pfs56 up:annotation ?annotation57 .
?annotation57 faldo:begin ?pfsb58 ;
faldo:end ?pfse59 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical; Name=VII' .
?pfsb58 faldo:position ?thisPositionOn60 ;
rdf:type faldo:ExactPosition .
?pfse59 faldo:position ?thisPositionOn61 ;
rdf:type faldo:ExactPosition .
?pfs62 up:annotation ?annotation63 .
?annotation63 faldo:begin ?pfsb64 ;
faldo:end ?pfse65 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical; Name=VIII' .
?pfsb64 faldo:position ?thisPositionOn66 ;
rdf:type faldo:ExactPosition .
?pfse65 faldo:position ?thisPositionOn67 ;
rdf:type faldo:ExactPosition .
?pfs68 up:annotation ?annotation69 .
?annotation69 faldo:begin ?pfsb70 ;
faldo:end ?pfse71 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical; Name=IX' .
?pfsb70 faldo:position ?thisPositionOn72 ;
rdf:type faldo:ExactPosition .
?pfse71 faldo:position ?thisPositionOn73 ;
rdf:type faldo:ExactPosition .
?pfs74 up:annotation ?annotation75 .
?annotation75 faldo:begin ?pfsb76 ;
faldo:end ?pfse77 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical; Name=X' .
?pfsb76 faldo:position ?thisPositionOn78 ;
rdf:type faldo:ExactPosition .
?pfse77 faldo:position ?thisPositionOn79 ;
rdf:type faldo:ExactPosition .
?pfs80 up:annotation ?annotation81 .
?annotation81 faldo:begin ?pfsb82 ;
faldo:end ?pfse83 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical; Name=XI' .
?pfsb82 faldo:position ?thisPositionOn84 ;
rdf:type faldo:ExactPosition .
?pfse83 faldo:position ?thisPositionOn85 ;
rdf:type faldo:ExactPosition .
?pfs86 up:annotation ?annotation87 .
?annotation87 faldo:begin ?pfsb88 ;
faldo:end ?pfse89 ;
up:ligand ?ligand90 ;
rdf:type up:Binding_Site_Annotation .
?pfsb88 faldo:position ?thisPositionOn91 ;
rdf:type faldo:ExactPosition .
?pfse89 faldo:position ?thisPositionOn92 ;
rdf:type faldo:ExactPosition .
?ligand90 rdfs:subClassOf chebi:49883 .
?pfs93 up:annotation ?annotation94 .
?annotation94 faldo:begin ?pfsb95 ;
faldo:end ?pfse96 ;
up:ligand ?ligand97 ;
rdf:type up:Binding_Site_Annotation .
?pfsb95 faldo:position ?thisPositionOn98 ;
rdf:type faldo:ExactPosition .
?pfse96 faldo:position ?thisPositionOn99 ;
rdf:type faldo:ExactPosition .
?ligand97 rdfs:subClassOf chebi:49883 .
?pfs100 up:annotation ?annotation101 .
?annotation101 faldo:begin ?pfsb102 ;
faldo:end ?pfse103 ;
up:ligand ?ligand104 ;
rdf:type up:Binding_Site_Annotation .
?pfsb102 faldo:position ?thisPositionOn105 ;
rdf:type faldo:ExactPosition .
?pfse103 faldo:position ?thisPositionOn106 ;
rdf:type faldo:ExactPosition .
?ligand104 rdfs:subClassOf chebi:18067 .
?pfs107 up:annotation ?annotation108 .
?annotation108 faldo:begin ?pfsb109 ;
faldo:end ?pfse110 ;
up:ligand ?ligand111 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'axial binding residue' .
?pfsb109 faldo:position ?thisPositionOn112 ;
rdf:type faldo:ExactPosition .
?pfse110 faldo:position ?thisPositionOn113 ;
rdf:type faldo:ExactPosition .
?ligand111 up:ligandPart ?ligand111 ;
rdfs:subClassOf chebi:189420 ,
chebi:25107 .
?pfs114 up:annotation ?annotation115 .
?annotation115 faldo:begin ?pfsb116 ;
faldo:end ?pfse117 ;
up:ligand ?ligand118 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'axial binding residue' .
?pfsb116 faldo:position ?thisPositionOn119 ;
rdf:type faldo:ExactPosition .
?pfse117 faldo:position ?thisPositionOn120 ;
rdf:type faldo:ExactPosition .
?ligand118 up:ligandPart ?ligand118 ;
rdfs:subClassOf chebi:25107 ,
chebi:73095 .
?pfs121 up:annotation ?annotation122 .
?annotation122 faldo:begin ?pfsb123 ;
faldo:end ?pfse124 ;
up:ligand ?ligand125 ;
rdf:type up:Binding_Site_Annotation .
?pfsb123 faldo:position ?thisPositionOn126 ;
rdf:type faldo:ExactPosition .
?pfse124 faldo:position ?thisPositionOn127 ;
rdf:type faldo:ExactPosition .
?ligand125 rdfs:subClassOf chebi:73095 .
?pfs128 up:annotation ?annotation129 .
?annotation129 faldo:begin ?pfsb130 ;
faldo:end ?pfse131 ;
up:ligand ?ligand132 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'axial binding residue' .
?pfsb130 faldo:position ?thisPositionOn133 ;
rdf:type faldo:ExactPosition .
?pfse131 faldo:position ?thisPositionOn134 ;
rdf:type faldo:ExactPosition .
?ligand132 up:ligandPart ?ligand132 ;
rdfs:subClassOf chebi:189419 ,
chebi:25107 .
?pfs135 up:annotation ?annotation136 .
?annotation136 faldo:begin ?pfsb137 ;
faldo:end ?pfse138 ;
up:ligand ?ligand139 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'axial binding residue' .
?pfsb137 faldo:position ?thisPositionOn140 ;
rdf:type faldo:ExactPosition .
?pfse138 faldo:position ?thisPositionOn141 ;
rdf:type faldo:ExactPosition .
?ligand139 up:ligandPart ?ligand139 ;
rdfs:subClassOf chebi:25107 ,
chebi:58416 .
?pfs142 up:annotation ?annotation143 .
?annotation143 faldo:begin ?pfsb144 ;
faldo:end ?pfse145 ;
up:ligand ?ligand146 ;
rdf:type up:Binding_Site_Annotation .
?pfsb144 faldo:position ?thisPositionOn147 ;
rdf:type faldo:ExactPosition .
?pfse145 faldo:position ?thisPositionOn148 ;
rdf:type faldo:ExactPosition .
?ligand146 rdfs:subClassOf chebi:58416 .
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up:attribution _:183275 ;
rdf:subject ?gene0 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene0 .
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rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation1 .
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rdf:subject ?this ;
rdf:predicate up:annotation ;
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rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:813 .
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rdf:subject ?this ;
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rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
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rdf:subject ?this ;
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rdf:subject ?this ;
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rdf:subject ?this ;
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rdf:subject ?this ;
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rdf:subject ?this ;
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rdf:subject ?this ;
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rdf:subject ?this ;
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rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1133 .
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rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009055 .
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rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000287 .
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rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0015979 .
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rdf:subject ?case4 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009535 .
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rdf:subject ?case8 ;
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rdf:subject ?case11 ;
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rdf:predicate up:classifiedWith ;
rdf:object keyword:793 .
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rdf:subject ?case15 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005886 .
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rdf:subject ?case17 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0042651 .
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rdf:subject ?pfs20 ;
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rdf:predicate up:annotation ;
rdf:object ?annotation136 .
_:183396 a rdf:Statement ;
up:attribution _:183325 ;
rdf:subject ?pfs135 ;
rdf:predicate up:annotation ;
rdf:object ?annotation136 .
_:183397 a rdf:Statement ;
up:source unirule:MF_00458 ;
rdf:subject ?pfs142 ;
rdf:predicate up:annotation ;
rdf:object ?annotation143 .
_:183398 a rdf:Statement ;
up:attribution _:183326 ;
rdf:subject ?pfs142 ;
rdf:predicate up:annotation ;
rdf:object ?annotation143 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00458
#Rule MF_00458 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-03
{
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00458 .
?thisOrganism rdfs:subClassOf+ taxon:1117 .
} UNION {
?this rdfs:seeAlso signature:MF_00458 .
{
?this up:encodedIn up:Plastid .
} UNION {
?this up:encodedIn up:Chloroplast .
} UNION {
?this up:encodedIn up:Cyanelle .
} UNION {
?this up:encodedIn up:Apicoplast .
} UNION {
?this up:encodedIn up:Organellar_chromatophore .
} UNION {
?this up:encodedIn up:Non-photosynthetic_plastid .
}
}
BIND(URI(CONCAT(STR(?this), '#MF_00458a1')) AS ?annotation1) .
BIND(URI(CONCAT(STR(?this), '#MF_00458a3')) AS ?annotation3) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch153 faldo:location ?templateMotifSequenceMatchRegionP0A405154 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A405156 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A405MF_00458149 .
?templateMotifSequenceMatchRegionP0A405154 faldo:begin ?templateMotifSequenceMatchBeginP0A405155 .
?templateMotifSequenceMatchBeginP0A405155 faldo:position ?templateMotifSequenceMatchBeginPositionP0A405150 ;
faldo:reference isoform:P0A405-1 .
?templateMotifSequenceProfileAlignmentOperationP0A405156 edam:has_input signature:MF_00458 ;
rdf:type edam:operation_0300 .
?targetMotifMatch157 faldo:location ?targetMotifMatchRegionMatch158 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00458160 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A405MF_00458151 .
?targetMotifMatchRegionMatch158 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00458159 .
?targetMotifMatchRegionMatchBeginMF_00458159 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00458152 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00458160 edam:has_input signature:MF_00458 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A405MF_00458149, 1, (STRLEN(?templateMotifCigarP0A405MF_00458149) - STRLEN(REPLACE(?templateMotifCigarP0A405MF_00458149, CONCAT('^(?:-*[^-]){', STR(((72 - ?templateMotifSequenceMatchBeginPositionP0A405150) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1161) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A405MF_00458151, 1, (STRLEN(?targetMotifMatchCigarP0A405MF_00458151) - STRLEN(REPLACE(?targetMotifMatchCigarP0A405MF_00458151, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1161), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A405MF_00458151, 1, (STRLEN(?targetMotifMatchCigarP0A405MF_00458151) - STRLEN(REPLACE(?targetMotifMatchCigarP0A405MF_00458151, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1161), '}'), '')))), '[^-]', ''))) AS ?step2162) .
BIND(((?step2162 + ?targetMotifMatchRegionMatchBeginPositionMF_00458152) - 1) AS ?thisPositionOn24) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A405MF_00458149, 1, (STRLEN(?templateMotifCigarP0A405MF_00458149) - STRLEN(REPLACE(?templateMotifCigarP0A405MF_00458149, CONCAT('^(?:-*[^-]){', STR(((95 - ?templateMotifSequenceMatchBeginPositionP0A405150) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1163) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A405MF_00458151, 1, (STRLEN(?targetMotifMatchCigarP0A405MF_00458151) - STRLEN(REPLACE(?targetMotifMatchCigarP0A405MF_00458151, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1163), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A405MF_00458151, 1, (STRLEN(?targetMotifMatchCigarP0A405MF_00458151) - STRLEN(REPLACE(?targetMotifMatchCigarP0A405MF_00458151, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1163), '}'), '')))), '[^-]', ''))) AS ?step2164) .
BIND(((?step2164 + ?targetMotifMatchRegionMatchBeginPositionMF_00458152) - 1) AS ?thisPositionOn25) .
BIND(?this AS ?pfs1t165) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb22) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse23) .
FILTER ((BOUND(?thisPositionOn24) && BOUND(?thisPositionOn25))) .
BIND(URI(CONCAT(STR(?this), '#MF_00458a21')) AS ?annotation21) .
BIND(?this AS ?pfs20) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch170 faldo:location ?templateMotifSequenceMatchRegionP0A405171 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A405173 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A405MF_00458166 .
?templateMotifSequenceMatchRegionP0A405171 faldo:begin ?templateMotifSequenceMatchBeginP0A405172 .
?templateMotifSequenceMatchBeginP0A405172 faldo:position ?templateMotifSequenceMatchBeginPositionP0A405167 ;
faldo:reference isoform:P0A405-1 .
?templateMotifSequenceProfileAlignmentOperationP0A405173 edam:has_input signature:MF_00458 ;
rdf:type edam:operation_0300 .
?targetMotifMatch174 faldo:location ?targetMotifMatchRegionMatch175 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00458177 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A405MF_00458168 .
?targetMotifMatchRegionMatch175 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00458176 .
?targetMotifMatchRegionMatchBeginMF_00458176 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00458169 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00458177 edam:has_input signature:MF_00458 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A405MF_00458166, 1, (STRLEN(?templateMotifCigarP0A405MF_00458166) - STRLEN(REPLACE(?templateMotifCigarP0A405MF_00458166, CONCAT('^(?:-*[^-]){', STR(((158 - ?templateMotifSequenceMatchBeginPositionP0A405167) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1178) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A405MF_00458168, 1, (STRLEN(?targetMotifMatchCigarP0A405MF_00458168) - STRLEN(REPLACE(?targetMotifMatchCigarP0A405MF_00458168, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1178), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A405MF_00458168, 1, (STRLEN(?targetMotifMatchCigarP0A405MF_00458168) - STRLEN(REPLACE(?targetMotifMatchCigarP0A405MF_00458168, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1178), '}'), '')))), '[^-]', ''))) AS ?step2179) .
BIND(((?step2179 + ?targetMotifMatchRegionMatchBeginPositionMF_00458169) - 1) AS ?thisPositionOn30) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A405MF_00458166, 1, (STRLEN(?templateMotifCigarP0A405MF_00458166) - STRLEN(REPLACE(?templateMotifCigarP0A405MF_00458166, CONCAT('^(?:-*[^-]){', STR(((181 - ?templateMotifSequenceMatchBeginPositionP0A405167) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1180) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A405MF_00458168, 1, (STRLEN(?targetMotifMatchCigarP0A405MF_00458168) - STRLEN(REPLACE(?targetMotifMatchCigarP0A405MF_00458168, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1180), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A405MF_00458168, 1, (STRLEN(?targetMotifMatchCigarP0A405MF_00458168) - STRLEN(REPLACE(?targetMotifMatchCigarP0A405MF_00458168, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1180), '}'), '')))), '[^-]', ''))) AS ?step2181) .
BIND(((?step2181 + ?targetMotifMatchRegionMatchBeginPositionMF_00458169) - 1) AS ?thisPositionOn31) .
BIND(?this AS ?pfs1t182) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb28) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse29) .
FILTER ((BOUND(?thisPositionOn30) && BOUND(?thisPositionOn31))) .
BIND(URI(CONCAT(STR(?this), '#MF_00458a27')) AS ?annotation27) .
BIND(?this AS ?pfs26) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch187 faldo:location ?templateMotifSequenceMatchRegionP0A405188 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A405190 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A405MF_00458183 .
?templateMotifSequenceMatchRegionP0A405188 faldo:begin ?templateMotifSequenceMatchBeginP0A405189 .
?templateMotifSequenceMatchBeginP0A405189 faldo:position ?templateMotifSequenceMatchBeginPositionP0A405184 ;
faldo:reference isoform:P0A405-1 .
?templateMotifSequenceProfileAlignmentOperationP0A405190 edam:has_input signature:MF_00458 ;
rdf:type edam:operation_0300 .
?targetMotifMatch191 faldo:location ?targetMotifMatchRegionMatch192 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00458194 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A405MF_00458185 .
?targetMotifMatchRegionMatch192 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00458193 .
?targetMotifMatchRegionMatchBeginMF_00458193 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00458186 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00458194 edam:has_input signature:MF_00458 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A405MF_00458183, 1, (STRLEN(?templateMotifCigarP0A405MF_00458183) - STRLEN(REPLACE(?templateMotifCigarP0A405MF_00458183, CONCAT('^(?:-*[^-]){', STR(((197 - ?templateMotifSequenceMatchBeginPositionP0A405184) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1195) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A405MF_00458185, 1, (STRLEN(?targetMotifMatchCigarP0A405MF_00458185) - STRLEN(REPLACE(?targetMotifMatchCigarP0A405MF_00458185, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1195), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A405MF_00458185, 1, (STRLEN(?targetMotifMatchCigarP0A405MF_00458185) - STRLEN(REPLACE(?targetMotifMatchCigarP0A405MF_00458185, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1195), '}'), '')))), '[^-]', ''))) AS ?step2196) .
BIND(((?step2196 + ?targetMotifMatchRegionMatchBeginPositionMF_00458186) - 1) AS ?thisPositionOn36) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A405MF_00458183, 1, (STRLEN(?templateMotifCigarP0A405MF_00458183) - STRLEN(REPLACE(?templateMotifCigarP0A405MF_00458183, CONCAT('^(?:-*[^-]){', STR(((221 - ?templateMotifSequenceMatchBeginPositionP0A405184) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1197) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A405MF_00458185, 1, (STRLEN(?targetMotifMatchCigarP0A405MF_00458185) - STRLEN(REPLACE(?targetMotifMatchCigarP0A405MF_00458185, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1197), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A405MF_00458185, 1, (STRLEN(?targetMotifMatchCigarP0A405MF_00458185) - STRLEN(REPLACE(?targetMotifMatchCigarP0A405MF_00458185, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1197), '}'), '')))), '[^-]', ''))) AS ?step2198) .
BIND(((?step2198 + ?targetMotifMatchRegionMatchBeginPositionMF_00458186) - 1) AS ?thisPositionOn37) .
BIND(?this AS ?pfs1t199) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfsb34) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfse35) .
FILTER ((BOUND(?thisPositionOn36) && BOUND(?thisPositionOn37))) .
BIND(URI(CONCAT(STR(?this), '#MF_00458a33')) AS ?annotation33) .
BIND(?this AS ?pfs32) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch204 faldo:location ?templateMotifSequenceMatchRegionP0A405205 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A405207 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A405MF_00458200 .
?templateMotifSequenceMatchRegionP0A405205 faldo:begin ?templateMotifSequenceMatchBeginP0A405206 .
?templateMotifSequenceMatchBeginP0A405206 faldo:position ?templateMotifSequenceMatchBeginPositionP0A405201 ;
faldo:reference isoform:P0A405-1 .
?templateMotifSequenceProfileAlignmentOperationP0A405207 edam:has_input signature:MF_00458 ;
rdf:type edam:operation_0300 .
?targetMotifMatch208 faldo:location ?targetMotifMatchRegionMatch209 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00458211 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A405MF_00458202 .
?targetMotifMatchRegionMatch209 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00458210 .
?targetMotifMatchRegionMatchBeginMF_00458210 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00458203 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00458211 edam:has_input signature:MF_00458 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A405MF_00458200, 1, (STRLEN(?templateMotifCigarP0A405MF_00458200) - STRLEN(REPLACE(?templateMotifCigarP0A405MF_00458200, CONCAT('^(?:-*[^-]){', STR(((297 - ?templateMotifSequenceMatchBeginPositionP0A405201) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1212) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A405MF_00458202, 1, (STRLEN(?targetMotifMatchCigarP0A405MF_00458202) - STRLEN(REPLACE(?targetMotifMatchCigarP0A405MF_00458202, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1212), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A405MF_00458202, 1, (STRLEN(?targetMotifMatchCigarP0A405MF_00458202) - STRLEN(REPLACE(?targetMotifMatchCigarP0A405MF_00458202, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1212), '}'), '')))), '[^-]', ''))) AS ?step2213) .
BIND(((?step2213 + ?targetMotifMatchRegionMatchBeginPositionMF_00458203) - 1) AS ?thisPositionOn42) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A405MF_00458200, 1, (STRLEN(?templateMotifCigarP0A405MF_00458200) - STRLEN(REPLACE(?templateMotifCigarP0A405MF_00458200, CONCAT('^(?:-*[^-]){', STR(((315 - ?templateMotifSequenceMatchBeginPositionP0A405201) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1214) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A405MF_00458202, 1, (STRLEN(?targetMotifMatchCigarP0A405MF_00458202) - STRLEN(REPLACE(?targetMotifMatchCigarP0A405MF_00458202, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1214), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A405MF_00458202, 1, (STRLEN(?targetMotifMatchCigarP0A405MF_00458202) - STRLEN(REPLACE(?targetMotifMatchCigarP0A405MF_00458202, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1214), '}'), '')))), '[^-]', ''))) AS ?step2215) .
BIND(((?step2215 + ?targetMotifMatchRegionMatchBeginPositionMF_00458203) - 1) AS ?thisPositionOn43) .
BIND(?this AS ?pfs1t216) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb40) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse41) .
FILTER ((BOUND(?thisPositionOn42) && BOUND(?thisPositionOn43))) .
BIND(URI(CONCAT(STR(?this), '#MF_00458a39')) AS ?annotation39) .
BIND(?this AS ?pfs38) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch221 faldo:location ?templateMotifSequenceMatchRegionP0A405222 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A405224 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A405MF_00458217 .
?templateMotifSequenceMatchRegionP0A405222 faldo:begin ?templateMotifSequenceMatchBeginP0A405223 .
?templateMotifSequenceMatchBeginP0A405223 faldo:position ?templateMotifSequenceMatchBeginPositionP0A405218 ;
faldo:reference isoform:P0A405-1 .
?templateMotifSequenceProfileAlignmentOperationP0A405224 edam:has_input signature:MF_00458 ;
rdf:type edam:operation_0300 .
?targetMotifMatch225 faldo:location ?targetMotifMatchRegionMatch226 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00458228 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A405MF_00458219 .
?targetMotifMatchRegionMatch226 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00458227 .
?targetMotifMatchRegionMatchBeginMF_00458227 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00458220 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00458228 edam:has_input signature:MF_00458 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A405MF_00458217, 1, (STRLEN(?templateMotifCigarP0A405MF_00458217) - STRLEN(REPLACE(?templateMotifCigarP0A405MF_00458217, CONCAT('^(?:-*[^-]){', STR(((352 - ?templateMotifSequenceMatchBeginPositionP0A405218) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1229) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A405MF_00458219, 1, (STRLEN(?targetMotifMatchCigarP0A405MF_00458219) - STRLEN(REPLACE(?targetMotifMatchCigarP0A405MF_00458219, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1229), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A405MF_00458219, 1, (STRLEN(?targetMotifMatchCigarP0A405MF_00458219) - STRLEN(REPLACE(?targetMotifMatchCigarP0A405MF_00458219, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1229), '}'), '')))), '[^-]', ''))) AS ?step2230) .
BIND(((?step2230 + ?targetMotifMatchRegionMatchBeginPositionMF_00458220) - 1) AS ?thisPositionOn48) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A405MF_00458217, 1, (STRLEN(?templateMotifCigarP0A405MF_00458217) - STRLEN(REPLACE(?templateMotifCigarP0A405MF_00458217, CONCAT('^(?:-*[^-]){', STR(((375 - ?templateMotifSequenceMatchBeginPositionP0A405218) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1231) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A405MF_00458219, 1, (STRLEN(?targetMotifMatchCigarP0A405MF_00458219) - STRLEN(REPLACE(?targetMotifMatchCigarP0A405MF_00458219, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1231), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A405MF_00458219, 1, (STRLEN(?targetMotifMatchCigarP0A405MF_00458219) - STRLEN(REPLACE(?targetMotifMatchCigarP0A405MF_00458219, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1231), '}'), '')))), '[^-]', ''))) AS ?step2232) .
BIND(((?step2232 + ?targetMotifMatchRegionMatchBeginPositionMF_00458220) - 1) AS ?thisPositionOn49) .
BIND(?this AS ?pfs1t233) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfsb46) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfse47) .
FILTER ((BOUND(?thisPositionOn48) && BOUND(?thisPositionOn49))) .
BIND(URI(CONCAT(STR(?this), '#MF_00458a45')) AS ?annotation45) .
BIND(?this AS ?pfs44) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch238 faldo:location ?templateMotifSequenceMatchRegionP0A405239 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A405241 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A405MF_00458234 .
?templateMotifSequenceMatchRegionP0A405239 faldo:begin ?templateMotifSequenceMatchBeginP0A405240 .
?templateMotifSequenceMatchBeginP0A405240 faldo:position ?templateMotifSequenceMatchBeginPositionP0A405235 ;
faldo:reference isoform:P0A405-1 .
?templateMotifSequenceProfileAlignmentOperationP0A405241 edam:has_input signature:MF_00458 ;
rdf:type edam:operation_0300 .
?targetMotifMatch242 faldo:location ?targetMotifMatchRegionMatch243 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00458245 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A405MF_00458236 .
?targetMotifMatchRegionMatch243 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00458244 .
?targetMotifMatchRegionMatchBeginMF_00458244 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00458237 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00458245 edam:has_input signature:MF_00458 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A405MF_00458234, 1, (STRLEN(?templateMotifCigarP0A405MF_00458234) - STRLEN(REPLACE(?templateMotifCigarP0A405MF_00458234, CONCAT('^(?:-*[^-]){', STR(((391 - ?templateMotifSequenceMatchBeginPositionP0A405235) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1246) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A405MF_00458236, 1, (STRLEN(?targetMotifMatchCigarP0A405MF_00458236) - STRLEN(REPLACE(?targetMotifMatchCigarP0A405MF_00458236, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1246), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A405MF_00458236, 1, (STRLEN(?targetMotifMatchCigarP0A405MF_00458236) - STRLEN(REPLACE(?targetMotifMatchCigarP0A405MF_00458236, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1246), '}'), '')))), '[^-]', ''))) AS ?step2247) .
BIND(((?step2247 + ?targetMotifMatchRegionMatchBeginPositionMF_00458237) - 1) AS ?thisPositionOn54) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A405MF_00458234, 1, (STRLEN(?templateMotifCigarP0A405MF_00458234) - STRLEN(REPLACE(?templateMotifCigarP0A405MF_00458234, CONCAT('^(?:-*[^-]){', STR(((417 - ?templateMotifSequenceMatchBeginPositionP0A405235) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1248) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A405MF_00458236, 1, (STRLEN(?targetMotifMatchCigarP0A405MF_00458236) - STRLEN(REPLACE(?targetMotifMatchCigarP0A405MF_00458236, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1248), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A405MF_00458236, 1, (STRLEN(?targetMotifMatchCigarP0A405MF_00458236) - STRLEN(REPLACE(?targetMotifMatchCigarP0A405MF_00458236, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1248), '}'), '')))), '[^-]', ''))) AS ?step2249) .
BIND(((?step2249 + ?targetMotifMatchRegionMatchBeginPositionMF_00458237) - 1) AS ?thisPositionOn55) .
BIND(?this AS ?pfs1t250) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfsb52) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfse53) .
FILTER ((BOUND(?thisPositionOn54) && BOUND(?thisPositionOn55))) .
BIND(URI(CONCAT(STR(?this), '#MF_00458a51')) AS ?annotation51) .
BIND(?this AS ?pfs50) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch255 faldo:location ?templateMotifSequenceMatchRegionP0A405256 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A405258 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A405MF_00458251 .
?templateMotifSequenceMatchRegionP0A405256 faldo:begin ?templateMotifSequenceMatchBeginP0A405257 .
?templateMotifSequenceMatchBeginP0A405257 faldo:position ?templateMotifSequenceMatchBeginPositionP0A405252 ;
faldo:reference isoform:P0A405-1 .
?templateMotifSequenceProfileAlignmentOperationP0A405258 edam:has_input signature:MF_00458 ;
rdf:type edam:operation_0300 .
?targetMotifMatch259 faldo:location ?targetMotifMatchRegionMatch260 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00458262 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A405MF_00458253 .
?targetMotifMatchRegionMatch260 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00458261 .
?targetMotifMatchRegionMatchBeginMF_00458261 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00458254 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00458262 edam:has_input signature:MF_00458 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A405MF_00458251, 1, (STRLEN(?templateMotifCigarP0A405MF_00458251) - STRLEN(REPLACE(?templateMotifCigarP0A405MF_00458251, CONCAT('^(?:-*[^-]){', STR(((439 - ?templateMotifSequenceMatchBeginPositionP0A405252) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1263) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A405MF_00458253, 1, (STRLEN(?targetMotifMatchCigarP0A405MF_00458253) - STRLEN(REPLACE(?targetMotifMatchCigarP0A405MF_00458253, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1263), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A405MF_00458253, 1, (STRLEN(?targetMotifMatchCigarP0A405MF_00458253) - STRLEN(REPLACE(?targetMotifMatchCigarP0A405MF_00458253, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1263), '}'), '')))), '[^-]', ''))) AS ?step2264) .
BIND(((?step2264 + ?targetMotifMatchRegionMatchBeginPositionMF_00458254) - 1) AS ?thisPositionOn60) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A405MF_00458251, 1, (STRLEN(?templateMotifCigarP0A405MF_00458251) - STRLEN(REPLACE(?templateMotifCigarP0A405MF_00458251, CONCAT('^(?:-*[^-]){', STR(((461 - ?templateMotifSequenceMatchBeginPositionP0A405252) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1265) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A405MF_00458253, 1, (STRLEN(?targetMotifMatchCigarP0A405MF_00458253) - STRLEN(REPLACE(?targetMotifMatchCigarP0A405MF_00458253, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1265), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A405MF_00458253, 1, (STRLEN(?targetMotifMatchCigarP0A405MF_00458253) - STRLEN(REPLACE(?targetMotifMatchCigarP0A405MF_00458253, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1265), '}'), '')))), '[^-]', ''))) AS ?step2266) .
BIND(((?step2266 + ?targetMotifMatchRegionMatchBeginPositionMF_00458254) - 1) AS ?thisPositionOn61) .
BIND(?this AS ?pfs1t267) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfsb58) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfse59) .
FILTER ((BOUND(?thisPositionOn60) && BOUND(?thisPositionOn61))) .
BIND(URI(CONCAT(STR(?this), '#MF_00458a57')) AS ?annotation57) .
BIND(?this AS ?pfs56) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch272 faldo:location ?templateMotifSequenceMatchRegionP0A405273 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A405275 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A405MF_00458268 .
?templateMotifSequenceMatchRegionP0A405273 faldo:begin ?templateMotifSequenceMatchBeginP0A405274 .
?templateMotifSequenceMatchBeginP0A405274 faldo:position ?templateMotifSequenceMatchBeginPositionP0A405269 ;
faldo:reference isoform:P0A405-1 .
?templateMotifSequenceProfileAlignmentOperationP0A405275 edam:has_input signature:MF_00458 ;
rdf:type edam:operation_0300 .
?targetMotifMatch276 faldo:location ?targetMotifMatchRegionMatch277 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00458279 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A405MF_00458270 .
?targetMotifMatchRegionMatch277 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00458278 .
?targetMotifMatchRegionMatchBeginMF_00458278 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00458271 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00458279 edam:has_input signature:MF_00458 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A405MF_00458268, 1, (STRLEN(?templateMotifCigarP0A405MF_00458268) - STRLEN(REPLACE(?templateMotifCigarP0A405MF_00458268, CONCAT('^(?:-*[^-]){', STR(((536 - ?templateMotifSequenceMatchBeginPositionP0A405269) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1280) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A405MF_00458270, 1, (STRLEN(?targetMotifMatchCigarP0A405MF_00458270) - STRLEN(REPLACE(?targetMotifMatchCigarP0A405MF_00458270, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1280), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A405MF_00458270, 1, (STRLEN(?targetMotifMatchCigarP0A405MF_00458270) - STRLEN(REPLACE(?targetMotifMatchCigarP0A405MF_00458270, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1280), '}'), '')))), '[^-]', ''))) AS ?step2281) .
BIND(((?step2281 + ?targetMotifMatchRegionMatchBeginPositionMF_00458271) - 1) AS ?thisPositionOn66) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A405MF_00458268, 1, (STRLEN(?templateMotifCigarP0A405MF_00458268) - STRLEN(REPLACE(?templateMotifCigarP0A405MF_00458268, CONCAT('^(?:-*[^-]){', STR(((554 - ?templateMotifSequenceMatchBeginPositionP0A405269) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1282) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A405MF_00458270, 1, (STRLEN(?targetMotifMatchCigarP0A405MF_00458270) - STRLEN(REPLACE(?targetMotifMatchCigarP0A405MF_00458270, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1282), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A405MF_00458270, 1, (STRLEN(?targetMotifMatchCigarP0A405MF_00458270) - STRLEN(REPLACE(?targetMotifMatchCigarP0A405MF_00458270, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1282), '}'), '')))), '[^-]', ''))) AS ?step2283) .
BIND(((?step2283 + ?targetMotifMatchRegionMatchBeginPositionMF_00458271) - 1) AS ?thisPositionOn67) .
BIND(?this AS ?pfs1t284) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfsb64) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfse65) .
FILTER ((BOUND(?thisPositionOn66) && BOUND(?thisPositionOn67))) .
BIND(URI(CONCAT(STR(?this), '#MF_00458a63')) AS ?annotation63) .
BIND(?this AS ?pfs62) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch289 faldo:location ?templateMotifSequenceMatchRegionP0A405290 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A405292 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A405MF_00458285 .
?templateMotifSequenceMatchRegionP0A405290 faldo:begin ?templateMotifSequenceMatchBeginP0A405291 .
?templateMotifSequenceMatchBeginP0A405291 faldo:position ?templateMotifSequenceMatchBeginPositionP0A405286 ;
faldo:reference isoform:P0A405-1 .
?templateMotifSequenceProfileAlignmentOperationP0A405292 edam:has_input signature:MF_00458 ;
rdf:type edam:operation_0300 .
?targetMotifMatch293 faldo:location ?targetMotifMatchRegionMatch294 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00458296 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A405MF_00458287 .
?targetMotifMatchRegionMatch294 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00458295 .
?targetMotifMatchRegionMatchBeginMF_00458295 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00458288 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00458296 edam:has_input signature:MF_00458 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A405MF_00458285, 1, (STRLEN(?templateMotifCigarP0A405MF_00458285) - STRLEN(REPLACE(?templateMotifCigarP0A405MF_00458285, CONCAT('^(?:-*[^-]){', STR(((594 - ?templateMotifSequenceMatchBeginPositionP0A405286) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1297) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A405MF_00458287, 1, (STRLEN(?targetMotifMatchCigarP0A405MF_00458287) - STRLEN(REPLACE(?targetMotifMatchCigarP0A405MF_00458287, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1297), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A405MF_00458287, 1, (STRLEN(?targetMotifMatchCigarP0A405MF_00458287) - STRLEN(REPLACE(?targetMotifMatchCigarP0A405MF_00458287, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1297), '}'), '')))), '[^-]', ''))) AS ?step2298) .
BIND(((?step2298 + ?targetMotifMatchRegionMatchBeginPositionMF_00458288) - 1) AS ?thisPositionOn72) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A405MF_00458285, 1, (STRLEN(?templateMotifCigarP0A405MF_00458285) - STRLEN(REPLACE(?templateMotifCigarP0A405MF_00458285, CONCAT('^(?:-*[^-]){', STR(((615 - ?templateMotifSequenceMatchBeginPositionP0A405286) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1299) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A405MF_00458287, 1, (STRLEN(?targetMotifMatchCigarP0A405MF_00458287) - STRLEN(REPLACE(?targetMotifMatchCigarP0A405MF_00458287, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1299), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A405MF_00458287, 1, (STRLEN(?targetMotifMatchCigarP0A405MF_00458287) - STRLEN(REPLACE(?targetMotifMatchCigarP0A405MF_00458287, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1299), '}'), '')))), '[^-]', ''))) AS ?step2300) .
BIND(((?step2300 + ?targetMotifMatchRegionMatchBeginPositionMF_00458288) - 1) AS ?thisPositionOn73) .
BIND(?this AS ?pfs1t301) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn72))) AS ?pfsb70) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfse71) .
FILTER ((BOUND(?thisPositionOn72) && BOUND(?thisPositionOn73))) .
BIND(URI(CONCAT(STR(?this), '#MF_00458a69')) AS ?annotation69) .
BIND(?this AS ?pfs68) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch306 faldo:location ?templateMotifSequenceMatchRegionP0A405307 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A405309 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A405MF_00458302 .
?templateMotifSequenceMatchRegionP0A405307 faldo:begin ?templateMotifSequenceMatchBeginP0A405308 .
?templateMotifSequenceMatchBeginP0A405308 faldo:position ?templateMotifSequenceMatchBeginPositionP0A405303 ;
faldo:reference isoform:P0A405-1 .
?templateMotifSequenceProfileAlignmentOperationP0A405309 edam:has_input signature:MF_00458 ;
rdf:type edam:operation_0300 .
?targetMotifMatch310 faldo:location ?targetMotifMatchRegionMatch311 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00458313 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A405MF_00458304 .
?targetMotifMatchRegionMatch311 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00458312 .
?targetMotifMatchRegionMatchBeginMF_00458312 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00458305 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00458313 edam:has_input signature:MF_00458 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A405MF_00458302, 1, (STRLEN(?templateMotifCigarP0A405MF_00458302) - STRLEN(REPLACE(?templateMotifCigarP0A405MF_00458302, CONCAT('^(?:-*[^-]){', STR(((669 - ?templateMotifSequenceMatchBeginPositionP0A405303) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1314) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A405MF_00458304, 1, (STRLEN(?targetMotifMatchCigarP0A405MF_00458304) - STRLEN(REPLACE(?targetMotifMatchCigarP0A405MF_00458304, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1314), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A405MF_00458304, 1, (STRLEN(?targetMotifMatchCigarP0A405MF_00458304) - STRLEN(REPLACE(?targetMotifMatchCigarP0A405MF_00458304, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1314), '}'), '')))), '[^-]', ''))) AS ?step2315) .
BIND(((?step2315 + ?targetMotifMatchRegionMatchBeginPositionMF_00458305) - 1) AS ?thisPositionOn78) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A405MF_00458302, 1, (STRLEN(?templateMotifCigarP0A405MF_00458302) - STRLEN(REPLACE(?templateMotifCigarP0A405MF_00458302, CONCAT('^(?:-*[^-]){', STR(((691 - ?templateMotifSequenceMatchBeginPositionP0A405303) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1316) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A405MF_00458304, 1, (STRLEN(?targetMotifMatchCigarP0A405MF_00458304) - STRLEN(REPLACE(?targetMotifMatchCigarP0A405MF_00458304, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1316), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A405MF_00458304, 1, (STRLEN(?targetMotifMatchCigarP0A405MF_00458304) - STRLEN(REPLACE(?targetMotifMatchCigarP0A405MF_00458304, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1316), '}'), '')))), '[^-]', ''))) AS ?step2317) .
BIND(((?step2317 + ?targetMotifMatchRegionMatchBeginPositionMF_00458305) - 1) AS ?thisPositionOn79) .
BIND(?this AS ?pfs1t318) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn78))) AS ?pfsb76) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn79))) AS ?pfse77) .
FILTER ((BOUND(?thisPositionOn78) && BOUND(?thisPositionOn79))) .
BIND(URI(CONCAT(STR(?this), '#MF_00458a75')) AS ?annotation75) .
BIND(?this AS ?pfs74) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch323 faldo:location ?templateMotifSequenceMatchRegionP0A405324 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A405326 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A405MF_00458319 .
?templateMotifSequenceMatchRegionP0A405324 faldo:begin ?templateMotifSequenceMatchBeginP0A405325 .
?templateMotifSequenceMatchBeginP0A405325 faldo:position ?templateMotifSequenceMatchBeginPositionP0A405320 ;
faldo:reference isoform:P0A405-1 .
?templateMotifSequenceProfileAlignmentOperationP0A405326 edam:has_input signature:MF_00458 ;
rdf:type edam:operation_0300 .
?targetMotifMatch327 faldo:location ?targetMotifMatchRegionMatch328 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00458330 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A405MF_00458321 .
?targetMotifMatchRegionMatch328 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00458329 .
?targetMotifMatchRegionMatchBeginMF_00458329 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00458322 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00458330 edam:has_input signature:MF_00458 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A405MF_00458319, 1, (STRLEN(?templateMotifCigarP0A405MF_00458319) - STRLEN(REPLACE(?templateMotifCigarP0A405MF_00458319, CONCAT('^(?:-*[^-]){', STR(((729 - ?templateMotifSequenceMatchBeginPositionP0A405320) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1331) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A405MF_00458321, 1, (STRLEN(?targetMotifMatchCigarP0A405MF_00458321) - STRLEN(REPLACE(?targetMotifMatchCigarP0A405MF_00458321, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1331), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A405MF_00458321, 1, (STRLEN(?targetMotifMatchCigarP0A405MF_00458321) - STRLEN(REPLACE(?targetMotifMatchCigarP0A405MF_00458321, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1331), '}'), '')))), '[^-]', ''))) AS ?step2332) .
BIND(((?step2332 + ?targetMotifMatchRegionMatchBeginPositionMF_00458322) - 1) AS ?thisPositionOn84) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A405MF_00458319, 1, (STRLEN(?templateMotifCigarP0A405MF_00458319) - STRLEN(REPLACE(?templateMotifCigarP0A405MF_00458319, CONCAT('^(?:-*[^-]){', STR(((749 - ?templateMotifSequenceMatchBeginPositionP0A405320) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1333) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A405MF_00458321, 1, (STRLEN(?targetMotifMatchCigarP0A405MF_00458321) - STRLEN(REPLACE(?targetMotifMatchCigarP0A405MF_00458321, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1333), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A405MF_00458321, 1, (STRLEN(?targetMotifMatchCigarP0A405MF_00458321) - STRLEN(REPLACE(?targetMotifMatchCigarP0A405MF_00458321, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1333), '}'), '')))), '[^-]', ''))) AS ?step2334) .
BIND(((?step2334 + ?targetMotifMatchRegionMatchBeginPositionMF_00458322) - 1) AS ?thisPositionOn85) .
BIND(?this AS ?pfs1t335) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn84))) AS ?pfsb82) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn85))) AS ?pfse83) .
FILTER ((BOUND(?thisPositionOn84) && BOUND(?thisPositionOn85))) .
BIND(URI(CONCAT(STR(?this), '#MF_00458a81')) AS ?annotation81) .
BIND(?this AS ?pfs80) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch340 faldo:location ?templateMotifSequenceMatchRegionP0A405341 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A405343 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A405MF_00458336 .
?templateMotifSequenceMatchRegionP0A405341 faldo:begin ?templateMotifSequenceMatchBeginP0A405342 .
?templateMotifSequenceMatchBeginP0A405342 faldo:position ?templateMotifSequenceMatchBeginPositionP0A405337 ;
faldo:reference isoform:P0A405-1 .
?templateMotifSequenceProfileAlignmentOperationP0A405343 edam:has_input signature:MF_00458 ;
rdf:type edam:operation_0300 .
?targetMotifMatch344 faldo:location ?targetMotifMatchRegionMatch345 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00458347 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A405MF_00458338 .
?targetMotifMatchRegionMatch345 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00458346 .
?targetMotifMatchRegionMatchBeginMF_00458346 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00458339 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00458347 edam:has_input signature:MF_00458 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A405MF_00458336, 1, (STRLEN(?templateMotifCigarP0A405MF_00458336) - STRLEN(REPLACE(?templateMotifCigarP0A405MF_00458336, CONCAT('^(?:-*[^-]){', STR(((578 - ?templateMotifSequenceMatchBeginPositionP0A405337) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1348) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A405MF_00458338, 1, (STRLEN(?targetMotifMatchCigarP0A405MF_00458338) - STRLEN(REPLACE(?targetMotifMatchCigarP0A405MF_00458338, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1348), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A405MF_00458338, 1, (STRLEN(?targetMotifMatchCigarP0A405MF_00458338) - STRLEN(REPLACE(?targetMotifMatchCigarP0A405MF_00458338, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1348), '}'), '')))), '[^-]', ''))) AS ?step2349) .
BIND(((?step2349 + ?targetMotifMatchRegionMatchBeginPositionMF_00458339) - 1) AS ?thisPositionOn91) .
BIND(?thisPositionOn91 AS ?thisPositionOn92) .
BIND(?this AS ?pfs1t350) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn91))) AS ?pfsb88) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn92))) AS ?pfse89) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn91, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_00458a87')) AS ?annotation87) .
BIND(?this AS ?pfs86) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch355 faldo:location ?templateMotifSequenceMatchRegionP0A405356 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A405358 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A405MF_00458351 .
?templateMotifSequenceMatchRegionP0A405356 faldo:begin ?templateMotifSequenceMatchBeginP0A405357 .
?templateMotifSequenceMatchBeginP0A405357 faldo:position ?templateMotifSequenceMatchBeginPositionP0A405352 ;
faldo:reference isoform:P0A405-1 .
?templateMotifSequenceProfileAlignmentOperationP0A405358 edam:has_input signature:MF_00458 ;
rdf:type edam:operation_0300 .
?targetMotifMatch359 faldo:location ?targetMotifMatchRegionMatch360 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00458362 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A405MF_00458353 .
?targetMotifMatchRegionMatch360 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00458361 .
?targetMotifMatchRegionMatchBeginMF_00458361 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00458354 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00458362 edam:has_input signature:MF_00458 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A405MF_00458351, 1, (STRLEN(?templateMotifCigarP0A405MF_00458351) - STRLEN(REPLACE(?templateMotifCigarP0A405MF_00458351, CONCAT('^(?:-*[^-]){', STR(((587 - ?templateMotifSequenceMatchBeginPositionP0A405352) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1363) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A405MF_00458353, 1, (STRLEN(?targetMotifMatchCigarP0A405MF_00458353) - STRLEN(REPLACE(?targetMotifMatchCigarP0A405MF_00458353, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1363), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A405MF_00458353, 1, (STRLEN(?targetMotifMatchCigarP0A405MF_00458353) - STRLEN(REPLACE(?targetMotifMatchCigarP0A405MF_00458353, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1363), '}'), '')))), '[^-]', ''))) AS ?step2364) .
BIND(((?step2364 + ?targetMotifMatchRegionMatchBeginPositionMF_00458354) - 1) AS ?thisPositionOn98) .
BIND(?thisPositionOn98 AS ?thisPositionOn99) .
BIND(?this AS ?pfs1t365) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn98))) AS ?pfsb95) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn99))) AS ?pfse96) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn98, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_00458a94')) AS ?annotation94) .
BIND(?this AS ?pfs93) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch370 faldo:location ?templateMotifSequenceMatchRegionP0A405371 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A405373 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A405MF_00458366 .
?templateMotifSequenceMatchRegionP0A405371 faldo:begin ?templateMotifSequenceMatchBeginP0A405372 .
?templateMotifSequenceMatchBeginP0A405372 faldo:position ?templateMotifSequenceMatchBeginPositionP0A405367 ;
faldo:reference isoform:P0A405-1 .
?templateMotifSequenceProfileAlignmentOperationP0A405373 edam:has_input signature:MF_00458 ;
rdf:type edam:operation_0300 .
?targetMotifMatch374 faldo:location ?targetMotifMatchRegionMatch375 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00458377 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A405MF_00458368 .
?targetMotifMatchRegionMatch375 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00458376 .
?targetMotifMatchRegionMatchBeginMF_00458376 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00458369 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00458377 edam:has_input signature:MF_00458 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A405MF_00458366, 1, (STRLEN(?templateMotifCigarP0A405MF_00458366) - STRLEN(REPLACE(?templateMotifCigarP0A405MF_00458366, CONCAT('^(?:-*[^-]){', STR(((697 - ?templateMotifSequenceMatchBeginPositionP0A405367) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1378) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A405MF_00458368, 1, (STRLEN(?targetMotifMatchCigarP0A405MF_00458368) - STRLEN(REPLACE(?targetMotifMatchCigarP0A405MF_00458368, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1378), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A405MF_00458368, 1, (STRLEN(?targetMotifMatchCigarP0A405MF_00458368) - STRLEN(REPLACE(?targetMotifMatchCigarP0A405MF_00458368, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1378), '}'), '')))), '[^-]', ''))) AS ?step2379) .
BIND(((?step2379 + ?targetMotifMatchRegionMatchBeginPositionMF_00458369) - 1) AS ?thisPositionOn105) .
BIND(?thisPositionOn105 AS ?thisPositionOn106) .
BIND(?this AS ?pfs1t380) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn105))) AS ?pfsb102) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn106))) AS ?pfse103) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn105, 1) = 'W')) .
BIND(URI(CONCAT(STR(?this), '#MF_00458a101')) AS ?annotation101) .
BIND(?this AS ?pfs100) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch385 faldo:location ?templateMotifSequenceMatchRegionP0A405386 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A405388 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A405MF_00458381 .
?templateMotifSequenceMatchRegionP0A405386 faldo:begin ?templateMotifSequenceMatchBeginP0A405387 .
?templateMotifSequenceMatchBeginP0A405387 faldo:position ?templateMotifSequenceMatchBeginPositionP0A405382 ;
faldo:reference isoform:P0A405-1 .
?templateMotifSequenceProfileAlignmentOperationP0A405388 edam:has_input signature:MF_00458 ;
rdf:type edam:operation_0300 .
?targetMotifMatch389 faldo:location ?targetMotifMatchRegionMatch390 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00458392 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A405MF_00458383 .
?targetMotifMatchRegionMatch390 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00458391 .
?targetMotifMatchRegionMatchBeginMF_00458391 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00458384 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00458392 edam:has_input signature:MF_00458 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:1218 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A405MF_00458381, 1, (STRLEN(?templateMotifCigarP0A405MF_00458381) - STRLEN(REPLACE(?templateMotifCigarP0A405MF_00458381, CONCAT('^(?:-*[^-]){', STR(((680 - ?templateMotifSequenceMatchBeginPositionP0A405382) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1393) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A405MF_00458383, 1, (STRLEN(?targetMotifMatchCigarP0A405MF_00458383) - STRLEN(REPLACE(?targetMotifMatchCigarP0A405MF_00458383, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1393), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A405MF_00458383, 1, (STRLEN(?targetMotifMatchCigarP0A405MF_00458383) - STRLEN(REPLACE(?targetMotifMatchCigarP0A405MF_00458383, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1393), '}'), '')))), '[^-]', ''))) AS ?step2394) .
BIND(((?step2394 + ?targetMotifMatchRegionMatchBeginPositionMF_00458384) - 1) AS ?thisPositionOn112) .
BIND(?thisPositionOn112 AS ?thisPositionOn113) .
BIND(?this AS ?pfs2t395) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn112))) AS ?pfsb109) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn113))) AS ?pfse110) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn112, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00458a108')) AS ?annotation108) .
BIND(?this AS ?pfs107) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch400 faldo:location ?templateMotifSequenceMatchRegionP0A405401 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A405403 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A405MF_00458396 .
?templateMotifSequenceMatchRegionP0A405401 faldo:begin ?templateMotifSequenceMatchBeginP0A405402 .
?templateMotifSequenceMatchBeginP0A405402 faldo:position ?templateMotifSequenceMatchBeginPositionP0A405397 ;
faldo:reference isoform:P0A405-1 .
?templateMotifSequenceProfileAlignmentOperationP0A405403 edam:has_input signature:MF_00458 ;
rdf:type edam:operation_0300 .
?targetMotifMatch404 faldo:location ?targetMotifMatchRegionMatch405 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00458407 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A405MF_00458398 .
?targetMotifMatchRegionMatch405 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00458406 .
?targetMotifMatchRegionMatchBeginMF_00458406 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00458399 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00458407 edam:has_input signature:MF_00458 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:1218 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A405MF_00458396, 1, (STRLEN(?templateMotifCigarP0A405MF_00458396) - STRLEN(REPLACE(?templateMotifCigarP0A405MF_00458396, CONCAT('^(?:-*[^-]){', STR(((688 - ?templateMotifSequenceMatchBeginPositionP0A405397) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1408) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A405MF_00458398, 1, (STRLEN(?targetMotifMatchCigarP0A405MF_00458398) - STRLEN(REPLACE(?targetMotifMatchCigarP0A405MF_00458398, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1408), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A405MF_00458398, 1, (STRLEN(?targetMotifMatchCigarP0A405MF_00458398) - STRLEN(REPLACE(?targetMotifMatchCigarP0A405MF_00458398, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1408), '}'), '')))), '[^-]', ''))) AS ?step2409) .
BIND(((?step2409 + ?targetMotifMatchRegionMatchBeginPositionMF_00458399) - 1) AS ?thisPositionOn119) .
BIND(?thisPositionOn119 AS ?thisPositionOn120) .
BIND(?this AS ?pfs2t410) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn119))) AS ?pfsb116) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn120))) AS ?pfse117) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn119, 1) = 'M')) .
BIND(URI(CONCAT(STR(?this), '#MF_00458a115')) AS ?annotation115) .
BIND(?this AS ?pfs114) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch415 faldo:location ?templateMotifSequenceMatchRegionP0A405416 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A405418 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A405MF_00458411 .
?templateMotifSequenceMatchRegionP0A405416 faldo:begin ?templateMotifSequenceMatchBeginP0A405417 .
?templateMotifSequenceMatchBeginP0A405417 faldo:position ?templateMotifSequenceMatchBeginPositionP0A405412 ;
faldo:reference isoform:P0A405-1 .
?templateMotifSequenceProfileAlignmentOperationP0A405418 edam:has_input signature:MF_00458 ;
rdf:type edam:operation_0300 .
?targetMotifMatch419 faldo:location ?targetMotifMatchRegionMatch420 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00458422 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A405MF_00458413 .
?targetMotifMatchRegionMatch420 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00458421 .
?targetMotifMatchRegionMatchBeginMF_00458421 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00458414 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00458422 edam:has_input signature:MF_00458 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:1218 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A405MF_00458411, 1, (STRLEN(?templateMotifCigarP0A405MF_00458411) - STRLEN(REPLACE(?templateMotifCigarP0A405MF_00458411, CONCAT('^(?:-*[^-]){', STR(((696 - ?templateMotifSequenceMatchBeginPositionP0A405412) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1423) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A405MF_00458413, 1, (STRLEN(?targetMotifMatchCigarP0A405MF_00458413) - STRLEN(REPLACE(?targetMotifMatchCigarP0A405MF_00458413, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1423), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A405MF_00458413, 1, (STRLEN(?targetMotifMatchCigarP0A405MF_00458413) - STRLEN(REPLACE(?targetMotifMatchCigarP0A405MF_00458413, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1423), '}'), '')))), '[^-]', ''))) AS ?step2424) .
BIND(((?step2424 + ?targetMotifMatchRegionMatchBeginPositionMF_00458414) - 1) AS ?thisPositionOn126) .
BIND(?thisPositionOn126 AS ?thisPositionOn127) .
BIND(?this AS ?pfs2t425) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn126))) AS ?pfsb123) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn127))) AS ?pfse124) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn126, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_00458a122')) AS ?annotation122) .
BIND(?this AS ?pfs121) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch430 faldo:location ?templateMotifSequenceMatchRegionP0A405431 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A405433 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A405MF_00458426 .
?templateMotifSequenceMatchRegionP0A405431 faldo:begin ?templateMotifSequenceMatchBeginP0A405432 .
?templateMotifSequenceMatchBeginP0A405432 faldo:position ?templateMotifSequenceMatchBeginPositionP0A405427 ;
faldo:reference isoform:P0A405-1 .
?templateMotifSequenceProfileAlignmentOperationP0A405433 edam:has_input signature:MF_00458 ;
rdf:type edam:operation_0300 .
?targetMotifMatch434 faldo:location ?targetMotifMatchRegionMatch435 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00458437 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A405MF_00458428 .
?targetMotifMatchRegionMatch435 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00458436 .
?targetMotifMatchRegionMatchBeginMF_00458436 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00458429 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00458437 edam:has_input signature:MF_00458 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:1218 .
})) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A405MF_00458426, 1, (STRLEN(?templateMotifCigarP0A405MF_00458426) - STRLEN(REPLACE(?templateMotifCigarP0A405MF_00458426, CONCAT('^(?:-*[^-]){', STR(((680 - ?templateMotifSequenceMatchBeginPositionP0A405427) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1438) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A405MF_00458428, 1, (STRLEN(?targetMotifMatchCigarP0A405MF_00458428) - STRLEN(REPLACE(?targetMotifMatchCigarP0A405MF_00458428, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1438), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A405MF_00458428, 1, (STRLEN(?targetMotifMatchCigarP0A405MF_00458428) - STRLEN(REPLACE(?targetMotifMatchCigarP0A405MF_00458428, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1438), '}'), '')))), '[^-]', ''))) AS ?step2439) .
BIND(((?step2439 + ?targetMotifMatchRegionMatchBeginPositionMF_00458429) - 1) AS ?thisPositionOn133) .
BIND(?thisPositionOn133 AS ?thisPositionOn134) .
BIND(?this AS ?pfs3t440) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn133))) AS ?pfsb130) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn134))) AS ?pfse131) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn133, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00458a129')) AS ?annotation129) .
BIND(?this AS ?pfs128) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch445 faldo:location ?templateMotifSequenceMatchRegionP0A405446 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A405448 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A405MF_00458441 .
?templateMotifSequenceMatchRegionP0A405446 faldo:begin ?templateMotifSequenceMatchBeginP0A405447 .
?templateMotifSequenceMatchBeginP0A405447 faldo:position ?templateMotifSequenceMatchBeginPositionP0A405442 ;
faldo:reference isoform:P0A405-1 .
?templateMotifSequenceProfileAlignmentOperationP0A405448 edam:has_input signature:MF_00458 ;
rdf:type edam:operation_0300 .
?targetMotifMatch449 faldo:location ?targetMotifMatchRegionMatch450 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00458452 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A405MF_00458443 .
?targetMotifMatchRegionMatch450 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00458451 .
?targetMotifMatchRegionMatchBeginMF_00458451 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00458444 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00458452 edam:has_input signature:MF_00458 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:1218 .
})) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A405MF_00458441, 1, (STRLEN(?templateMotifCigarP0A405MF_00458441) - STRLEN(REPLACE(?templateMotifCigarP0A405MF_00458441, CONCAT('^(?:-*[^-]){', STR(((688 - ?templateMotifSequenceMatchBeginPositionP0A405442) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1453) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A405MF_00458443, 1, (STRLEN(?targetMotifMatchCigarP0A405MF_00458443) - STRLEN(REPLACE(?targetMotifMatchCigarP0A405MF_00458443, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1453), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A405MF_00458443, 1, (STRLEN(?targetMotifMatchCigarP0A405MF_00458443) - STRLEN(REPLACE(?targetMotifMatchCigarP0A405MF_00458443, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1453), '}'), '')))), '[^-]', ''))) AS ?step2454) .
BIND(((?step2454 + ?targetMotifMatchRegionMatchBeginPositionMF_00458444) - 1) AS ?thisPositionOn140) .
BIND(?thisPositionOn140 AS ?thisPositionOn141) .
BIND(?this AS ?pfs3t455) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn140))) AS ?pfsb137) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn141))) AS ?pfse138) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn140, 1) = 'M')) .
BIND(URI(CONCAT(STR(?this), '#MF_00458a136')) AS ?annotation136) .
BIND(?this AS ?pfs135) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch460 faldo:location ?templateMotifSequenceMatchRegionP0A405461 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A405463 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A405MF_00458456 .
?templateMotifSequenceMatchRegionP0A405461 faldo:begin ?templateMotifSequenceMatchBeginP0A405462 .
?templateMotifSequenceMatchBeginP0A405462 faldo:position ?templateMotifSequenceMatchBeginPositionP0A405457 ;
faldo:reference isoform:P0A405-1 .
?templateMotifSequenceProfileAlignmentOperationP0A405463 edam:has_input signature:MF_00458 ;
rdf:type edam:operation_0300 .
?targetMotifMatch464 faldo:location ?targetMotifMatchRegionMatch465 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00458467 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A405MF_00458458 .
?targetMotifMatchRegionMatch465 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00458466 .
?targetMotifMatchRegionMatchBeginMF_00458466 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00458459 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00458467 edam:has_input signature:MF_00458 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:1218 .
})) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A405MF_00458456, 1, (STRLEN(?templateMotifCigarP0A405MF_00458456) - STRLEN(REPLACE(?templateMotifCigarP0A405MF_00458456, CONCAT('^(?:-*[^-]){', STR(((696 - ?templateMotifSequenceMatchBeginPositionP0A405457) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1468) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A405MF_00458458, 1, (STRLEN(?targetMotifMatchCigarP0A405MF_00458458) - STRLEN(REPLACE(?targetMotifMatchCigarP0A405MF_00458458, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1468), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A405MF_00458458, 1, (STRLEN(?targetMotifMatchCigarP0A405MF_00458458) - STRLEN(REPLACE(?targetMotifMatchCigarP0A405MF_00458458, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1468), '}'), '')))), '[^-]', ''))) AS ?step2469) .
BIND(((?step2469 + ?targetMotifMatchRegionMatchBeginPositionMF_00458459) - 1) AS ?thisPositionOn147) .
BIND(?thisPositionOn147 AS ?thisPositionOn148) .
BIND(?this AS ?pfs3t470) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn147))) AS ?pfsb144) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn148))) AS ?pfse145) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn147, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_00458a143')) AS ?annotation143) .
BIND(?this AS ?pfs142) .
}
OPTIONAL {
?this a up:Protein .
{
?this up:encodedIn up:Plastid .
} UNION {
?this up:encodedIn up:Chloroplast .
}
BIND(?this AS ?case4) .
BIND(URI(CONCAT(STR(?this), '#MF_00458a5')) AS ?name5) .
BIND(URI(CONCAT(STR(?this), '#MF_00458a6')) AS ?name6) .
BIND(URI(CONCAT(STR(?this), '#MF_00458a7')) AS ?name7) .
}
OPTIONAL {
?this a up:Protein .
FILTER (! (EXISTS {
{
?this up:encodedIn up:Plastid .
} UNION {
?this up:encodedIn up:Chloroplast .
}
})) .
BIND(?this AS ?case8) .
BIND(URI(CONCAT(STR(?this), '#MF_00458a9')) AS ?name9) .
BIND(URI(CONCAT(STR(?this), '#MF_00458a10')) AS ?name10) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:33071 .
BIND(?this AS ?case11) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:1218 .
BIND(?this AS ?case12) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:33071 .
})) .
BIND(?this AS ?case13) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:35493 .
{
?this up:encodedIn up:Plastid .
} UNION {
?this up:encodedIn up:Chloroplast .
}
BIND(?this AS ?case14) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:33071 .
FILTER (! (EXISTS {
{
?this up:encodedIn up:Plastid .
} UNION {
?this up:encodedIn up:Chloroplast .
}
})) .
BIND(?this AS ?case15) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
{
?this up:encodedIn up:Plastid .
} UNION {
?this up:encodedIn up:Chloroplast .
}
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:1117 .
})) .
BIND(?this AS ?case16) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
{
?this up:encodedIn up:Plastid .
} UNION {
?this up:encodedIn up:Chloroplast .
}
})) .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:33071 .
})) .
BIND(?this AS ?case17) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:1117 .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:1218 .
})) .
BIND(?this AS ?case18) .
}
OPTIONAL {
?this a up:Protein .
{
?this up:organism ?thisOrganism .
{
?this up:encodedIn up:Plastid .
} UNION {
?this up:encodedIn up:Chloroplast .
}
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:35493 .
})) .
} UNION {
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:1117 .
}
BIND(?this AS ?case19) .
}
}
"xsd:string |
