| http://purl.uniprot.org/unirules/MF_00482#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:193413 up:source unirule:MF_00482 .
_:193414 up:source unirule:MF_00482 .
_:193415 up:source unirule:MF_00482 .
_:193416 up:source unirule:MF_00482 .
_:193417 up:source unirule:MF_00482 .
_:193418 up:source unirule:MF_00482 .
_:193419 up:source unirule:MF_00482 .
_:193420 up:source unirule:MF_00482 .
_:193421 up:source unirule:MF_00482 .
_:193422 up:source unirule:MF_00482 .
_:193423 up:source unirule:MF_00482 .
_:193424 up:source unirule:MF_00482 .
_:193425 up:source unirule:MF_00482 .
_:193426 up:source unirule:MF_00482 .
_:193427 up:source unirule:MF_00482 .
_:193428 up:source unirule:MF_00482 .
_:193429 up:source unirule:MF_00482 .
_:193430 up:source unirule:MF_00482 .
_:193431 up:source unirule:MF_00482 .
_:193432 up:source unirule:MF_00482 .
_:193433 up:source unirule:MF_00482 .
_:193434 up:source unirule:MF_00482 .
_:193435 up:source unirule:MF_00482 .
_:193436 up:source unirule:MF_00482 .
_:193437 up:source unirule:MF_00482 .
_:193438 up:source unirule:MF_00482 .
_:193439 up:source unirule:MF_00482 .
_:193440 up:source unirule:MF_00482 .
_:193441 up:source unirule:MF_00482 .
_:193442 up:source unirule:MF_00482 .
_:193443 up:source unirule:MF_00482 .
_:193444 up:source unirule:MF_00482 .
_:193445 up:source unirule:MF_00482 .
_:193446 up:source unirule:MF_00482 .
_:193447 up:source unirule:MF_00482 .
_:193448 up:source unirule:MF_00482 .
_:193449 up:source unirule:MF_00482 .
_:193450 up:source unirule:MF_00482 .
_:193451 up:source unirule:MF_00482 .
_:193452 up:source unirule:MF_00482 .
_:193453 up:source unirule:MF_00482 .
_:193454 up:source unirule:MF_00482 .
_:193455 up:source unirule:MF_00482 .
_:193456 up:source unirule:MF_00482 .
_:193457 up:source unirule:MF_00482 .
_:193458 up:source unirule:MF_00482 .
_:193459 up:source unirule:MF_00482 .
_:193460 up:source unirule:MF_00482 .
_:193461 up:source unirule:MF_00482 .
_:193462 up:source unirule:MF_00482 .
_:193463 up:source unirule:MF_00482 .
_:193464 up:source unirule:MF_00482 .
?this up:annotation ?annotation1 ,
?annotation3 ;
up:classifiedWith GO:0000287 ,
GO:0009055 ,
GO:0015979 ,
keyword:1133 ,
keyword:148 ,
keyword:157 ,
keyword:249 ,
keyword:408 ,
keyword:411 ,
keyword:460 ,
keyword:472 ,
keyword:479 ,
keyword:4 ,
keyword:560 ,
keyword:602 ,
keyword:603 ,
keyword:812 ,
keyword:813 .
?gene0 skos:prefLabel 'psaB' .
?annotation1 up:activity ?activity2 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity2 up:catalyticActivity ;
up:enzymeClass .
?annotation3 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the PsaA/PsaB family.' .
?case4 up:alternativeName ?name6 ,
?name7 ;
up:classifiedWith GO:0009535 ;
up:recommendedName ?name5 .
?name5 up:ecName '1.97.1.12' ;
up:fullName 'Photosystem I P700 chlorophyll a apoprotein A2' ;
rdf:type up:Structured_Name .
?name6 up:fullName 'PSI-B' ;
rdf:type up:Structured_Name .
?name7 up:fullName 'PsaB' ;
rdf:type up:Structured_Name .
?case8 up:alternativeName ?name10 ;
up:recommendedName ?name9 .
?name9 up:ecName '1.97.1.12' ;
up:fullName 'Photosystem I P700 chlorophyll a apoprotein A2' ;
rdf:type up:Structured_Name .
?name10 up:fullName 'PsaB' ;
rdf:type up:Structured_Name .
?case11 up:classifiedWith keyword:1003 ,
keyword:997 .
?case13 up:classifiedWith keyword:793 .
?case15 up:classifiedWith GO:0005886 .
?case17 up:classifiedWith GO:0042651 .
?pfs20 up:annotation ?annotation21 .
?annotation21 faldo:begin ?pfsb22 ;
faldo:end ?pfse23 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical; Name=I' .
?pfsb22 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfse23 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?pfs26 up:annotation ?annotation27 .
?annotation27 faldo:begin ?pfsb28 ;
faldo:end ?pfse29 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical; Name=II' .
?pfsb28 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?pfse29 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?pfs32 up:annotation ?annotation33 .
?annotation33 faldo:begin ?pfsb34 ;
faldo:end ?pfse35 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical; Name=III' .
?pfsb34 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?pfse35 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?pfs38 up:annotation ?annotation39 .
?annotation39 faldo:begin ?pfsb40 ;
faldo:end ?pfse41 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical; Name=IV' .
?pfsb40 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?pfse41 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?pfs44 up:annotation ?annotation45 .
?annotation45 faldo:begin ?pfsb46 ;
faldo:end ?pfse47 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical; Name=V' .
?pfsb46 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?pfse47 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?pfs50 up:annotation ?annotation51 .
?annotation51 faldo:begin ?pfsb52 ;
faldo:end ?pfse53 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical; Name=VI' .
?pfsb52 faldo:position ?thisPositionOn54 ;
rdf:type faldo:ExactPosition .
?pfse53 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
?pfs56 up:annotation ?annotation57 .
?annotation57 faldo:begin ?pfsb58 ;
faldo:end ?pfse59 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical; Name=VII' .
?pfsb58 faldo:position ?thisPositionOn60 ;
rdf:type faldo:ExactPosition .
?pfse59 faldo:position ?thisPositionOn61 ;
rdf:type faldo:ExactPosition .
?pfs62 up:annotation ?annotation63 .
?annotation63 faldo:begin ?pfsb64 ;
faldo:end ?pfse65 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical; Name=VIII' .
?pfsb64 faldo:position ?thisPositionOn66 ;
rdf:type faldo:ExactPosition .
?pfse65 faldo:position ?thisPositionOn67 ;
rdf:type faldo:ExactPosition .
?pfs68 up:annotation ?annotation69 .
?annotation69 faldo:begin ?pfsb70 ;
faldo:end ?pfse71 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical; Name=IX' .
?pfsb70 faldo:position ?thisPositionOn72 ;
rdf:type faldo:ExactPosition .
?pfse71 faldo:position ?thisPositionOn73 ;
rdf:type faldo:ExactPosition .
?pfs74 up:annotation ?annotation75 .
?annotation75 faldo:begin ?pfsb76 ;
faldo:end ?pfse77 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical; Name=X' .
?pfsb76 faldo:position ?thisPositionOn78 ;
rdf:type faldo:ExactPosition .
?pfse77 faldo:position ?thisPositionOn79 ;
rdf:type faldo:ExactPosition .
?pfs80 up:annotation ?annotation81 .
?annotation81 faldo:begin ?pfsb82 ;
faldo:end ?pfse83 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical; Name=XI' .
?pfsb82 faldo:position ?thisPositionOn84 ;
rdf:type faldo:ExactPosition .
?pfse83 faldo:position ?thisPositionOn85 ;
rdf:type faldo:ExactPosition .
?pfs86 up:annotation ?annotation87 .
?annotation87 faldo:begin ?pfsb88 ;
faldo:end ?pfse89 ;
up:ligand ?ligand90 ;
rdf:type up:Binding_Site_Annotation .
?pfsb88 faldo:position ?thisPositionOn91 ;
rdf:type faldo:ExactPosition .
?pfse89 faldo:position ?thisPositionOn92 ;
rdf:type faldo:ExactPosition .
?ligand90 rdfs:subClassOf chebi:49883 .
?pfs93 up:annotation ?annotation94 .
?annotation94 faldo:begin ?pfsb95 ;
faldo:end ?pfse96 ;
up:ligand ?ligand97 ;
rdf:type up:Binding_Site_Annotation .
?pfsb95 faldo:position ?thisPositionOn98 ;
rdf:type faldo:ExactPosition .
?pfse96 faldo:position ?thisPositionOn99 ;
rdf:type faldo:ExactPosition .
?ligand97 rdfs:subClassOf chebi:49883 .
?pfs100 up:annotation ?annotation101 .
?annotation101 faldo:begin ?pfsb102 ;
faldo:end ?pfse103 ;
up:ligand ?ligand104 ;
rdf:type up:Binding_Site_Annotation .
?pfsb102 faldo:position ?thisPositionOn105 ;
rdf:type faldo:ExactPosition .
?pfse103 faldo:position ?thisPositionOn106 ;
rdf:type faldo:ExactPosition .
?ligand104 rdfs:subClassOf chebi:18067 .
?pfs107 up:annotation ?annotation108 .
?annotation108 faldo:begin ?pfsb109 ;
faldo:end ?pfse110 ;
up:ligand ?ligand111 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'axial binding residue' .
?pfsb109 faldo:position ?thisPositionOn112 ;
rdf:type faldo:ExactPosition .
?pfse110 faldo:position ?thisPositionOn113 ;
rdf:type faldo:ExactPosition .
?ligand111 up:ligandPart ?ligand111 ;
rdfs:subClassOf chebi:25107 ,
chebi:58416 .
?pfs114 up:annotation ?annotation115 .
?annotation115 faldo:begin ?pfsb116 ;
faldo:end ?pfse117 ;
up:ligand ?ligand118 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'axial binding residue' .
?pfsb116 faldo:position ?thisPositionOn119 ;
rdf:type faldo:ExactPosition .
?pfse117 faldo:position ?thisPositionOn120 ;
rdf:type faldo:ExactPosition .
?ligand118 up:ligandPart ?ligand118 ;
rdfs:subClassOf chebi:25107 ,
chebi:58416 .
?pfs121 up:annotation ?annotation122 .
?annotation122 faldo:begin ?pfsb123 ;
faldo:end ?pfse124 ;
up:ligand ?ligand125 ;
rdf:type up:Binding_Site_Annotation .
?pfsb123 faldo:position ?thisPositionOn126 ;
rdf:type faldo:ExactPosition .
?pfse124 faldo:position ?thisPositionOn127 ;
rdf:type faldo:ExactPosition .
?ligand125 rdfs:subClassOf chebi:58416 .
?pfs128 up:annotation ?annotation129 .
?annotation129 faldo:begin ?pfsb130 ;
faldo:end ?pfse131 ;
up:ligand ?ligand132 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'axial binding residue' .
?pfsb130 faldo:position ?thisPositionOn133 ;
rdf:type faldo:ExactPosition .
?pfse131 faldo:position ?thisPositionOn134 ;
rdf:type faldo:ExactPosition .
?ligand132 up:ligandPart ?ligand132 ;
rdfs:subClassOf chebi:25107 ,
chebi:73095 .
?pfs135 up:annotation ?annotation136 .
?annotation136 faldo:begin ?pfsb137 ;
faldo:end ?pfse138 ;
up:ligand ?ligand139 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'axial binding residue' .
?pfsb137 faldo:position ?thisPositionOn140 ;
rdf:type faldo:ExactPosition .
?pfse138 faldo:position ?thisPositionOn141 ;
rdf:type faldo:ExactPosition .
?ligand139 up:ligandPart ?ligand139 ;
rdfs:subClassOf chebi:25107 ,
chebi:73095 .
?pfs142 up:annotation ?annotation143 .
?annotation143 faldo:begin ?pfsb144 ;
faldo:end ?pfse145 ;
up:ligand ?ligand146 ;
rdf:type up:Binding_Site_Annotation .
?pfsb144 faldo:position ?thisPositionOn147 ;
rdf:type faldo:ExactPosition .
?pfse145 faldo:position ?thisPositionOn148 ;
rdf:type faldo:ExactPosition .
?ligand146 rdfs:subClassOf chebi:73095 .
_:193465 a rdf:Statement ;
up:attribution _:193413 ;
rdf:subject ?gene0 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene0 .
_:193466 a rdf:Statement ;
up:attribution _:193414 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation1 .
_:193467 a rdf:Statement ;
up:attribution _:193415 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:193468 a rdf:Statement ;
up:attribution _:193416 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:813 .
_:193469 a rdf:Statement ;
up:attribution _:193417 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:249 .
_:193470 a rdf:Statement ;
up:attribution _:193418 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:602 .
_:193471 a rdf:Statement ;
up:attribution _:193419 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:603 .
_:193472 a rdf:Statement ;
up:attribution _:193420 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:157 .
_:193473 a rdf:Statement ;
up:attribution _:193421 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:148 .
_:193474 a rdf:Statement ;
up:attribution _:193422 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
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up:attribution _:193423 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:408 .
_:193476 a rdf:Statement ;
up:attribution _:193424 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:560 .
_:193477 a rdf:Statement ;
up:attribution _:193425 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:193478 a rdf:Statement ;
up:attribution _:193426 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:411 .
_:193479 a rdf:Statement ;
up:attribution _:193427 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:4 .
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up:attribution _:193428 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:193481 a rdf:Statement ;
up:attribution _:193429 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:812 .
_:193482 a rdf:Statement ;
up:attribution _:193430 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1133 .
_:193483 a rdf:Statement ;
up:attribution _:193431 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009055 .
_:193484 a rdf:Statement ;
up:attribution _:193432 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000287 .
_:193485 a rdf:Statement ;
up:attribution _:193433 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0015979 .
_:193486 a rdf:Statement ;
up:attribution _:193434 ;
rdf:subject ?case4 ;
rdf:predicate up:recommendedName ;
rdf:object ?name5 .
_:193487 a rdf:Statement ;
up:attribution _:193435 ;
rdf:subject ?case4 ;
rdf:predicate up:alternativeName ;
rdf:object ?name6 .
_:193488 a rdf:Statement ;
up:attribution _:193436 ;
rdf:subject ?case4 ;
rdf:predicate up:alternativeName ;
rdf:object ?name7 .
_:193489 a rdf:Statement ;
up:attribution _:193437 ;
rdf:subject ?case4 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009535 .
_:193490 a rdf:Statement ;
up:attribution _:193438 ;
rdf:subject ?case8 ;
rdf:predicate up:recommendedName ;
rdf:object ?name9 .
_:193491 a rdf:Statement ;
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rdf:subject ?case8 ;
rdf:predicate up:alternativeName ;
rdf:object ?name10 .
_:193492 a rdf:Statement ;
up:attribution _:193440 ;
rdf:subject ?case11 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1003 .
_:193493 a rdf:Statement ;
up:attribution _:193441 ;
rdf:subject ?case11 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:997 .
_:193494 a rdf:Statement ;
up:attribution _:193442 ;
rdf:subject ?case13 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:793 .
_:193495 a rdf:Statement ;
up:attribution _:193443 ;
rdf:subject ?case15 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005886 .
_:193496 a rdf:Statement ;
up:attribution _:193444 ;
rdf:subject ?case17 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0042651 .
_:193497 a rdf:Statement ;
up:source unirule:MF_00482 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:193498 a rdf:Statement ;
up:attribution _:193445 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:193499 a rdf:Statement ;
up:source unirule:MF_00482 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:193500 a rdf:Statement ;
up:attribution _:193446 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:193501 a rdf:Statement ;
up:source unirule:MF_00482 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:193502 a rdf:Statement ;
up:attribution _:193447 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:193503 a rdf:Statement ;
up:source unirule:MF_00482 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:193504 a rdf:Statement ;
up:attribution _:193448 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:193505 a rdf:Statement ;
up:source unirule:MF_00482 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:193506 a rdf:Statement ;
up:attribution _:193449 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:193507 a rdf:Statement ;
up:source unirule:MF_00482 ;
rdf:subject ?pfs50 ;
rdf:predicate up:annotation ;
rdf:object ?annotation51 .
_:193508 a rdf:Statement ;
up:attribution _:193450 ;
rdf:subject ?pfs50 ;
rdf:predicate up:annotation ;
rdf:object ?annotation51 .
_:193509 a rdf:Statement ;
up:source unirule:MF_00482 ;
rdf:subject ?pfs56 ;
rdf:predicate up:annotation ;
rdf:object ?annotation57 .
_:193510 a rdf:Statement ;
up:attribution _:193451 ;
rdf:subject ?pfs56 ;
rdf:predicate up:annotation ;
rdf:object ?annotation57 .
_:193511 a rdf:Statement ;
up:source unirule:MF_00482 ;
rdf:subject ?pfs62 ;
rdf:predicate up:annotation ;
rdf:object ?annotation63 .
_:193512 a rdf:Statement ;
up:attribution _:193452 ;
rdf:subject ?pfs62 ;
rdf:predicate up:annotation ;
rdf:object ?annotation63 .
_:193513 a rdf:Statement ;
up:source unirule:MF_00482 ;
rdf:subject ?pfs68 ;
rdf:predicate up:annotation ;
rdf:object ?annotation69 .
_:193514 a rdf:Statement ;
up:attribution _:193453 ;
rdf:subject ?pfs68 ;
rdf:predicate up:annotation ;
rdf:object ?annotation69 .
_:193515 a rdf:Statement ;
up:source unirule:MF_00482 ;
rdf:subject ?pfs74 ;
rdf:predicate up:annotation ;
rdf:object ?annotation75 .
_:193516 a rdf:Statement ;
up:attribution _:193454 ;
rdf:subject ?pfs74 ;
rdf:predicate up:annotation ;
rdf:object ?annotation75 .
_:193517 a rdf:Statement ;
up:source unirule:MF_00482 ;
rdf:subject ?pfs80 ;
rdf:predicate up:annotation ;
rdf:object ?annotation81 .
_:193518 a rdf:Statement ;
up:attribution _:193455 ;
rdf:subject ?pfs80 ;
rdf:predicate up:annotation ;
rdf:object ?annotation81 .
_:193519 a rdf:Statement ;
up:source unirule:MF_00482 ;
rdf:subject ?pfs86 ;
rdf:predicate up:annotation ;
rdf:object ?annotation87 .
_:193520 a rdf:Statement ;
up:attribution _:193456 ;
rdf:subject ?pfs86 ;
rdf:predicate up:annotation ;
rdf:object ?annotation87 .
_:193521 a rdf:Statement ;
up:source unirule:MF_00482 ;
rdf:subject ?pfs93 ;
rdf:predicate up:annotation ;
rdf:object ?annotation94 .
_:193522 a rdf:Statement ;
up:attribution _:193457 ;
rdf:subject ?pfs93 ;
rdf:predicate up:annotation ;
rdf:object ?annotation94 .
_:193523 a rdf:Statement ;
up:source unirule:MF_00482 ;
rdf:subject ?pfs100 ;
rdf:predicate up:annotation ;
rdf:object ?annotation101 .
_:193524 a rdf:Statement ;
up:attribution _:193458 ;
rdf:subject ?pfs100 ;
rdf:predicate up:annotation ;
rdf:object ?annotation101 .
_:193525 a rdf:Statement ;
up:source unirule:MF_00482 ;
rdf:subject ?pfs107 ;
rdf:predicate up:annotation ;
rdf:object ?annotation108 .
_:193526 a rdf:Statement ;
up:attribution _:193459 ;
rdf:subject ?pfs107 ;
rdf:predicate up:annotation ;
rdf:object ?annotation108 .
_:193527 a rdf:Statement ;
up:source unirule:MF_00482 ;
rdf:subject ?pfs114 ;
rdf:predicate up:annotation ;
rdf:object ?annotation115 .
_:193528 a rdf:Statement ;
up:attribution _:193460 ;
rdf:subject ?pfs114 ;
rdf:predicate up:annotation ;
rdf:object ?annotation115 .
_:193529 a rdf:Statement ;
up:source unirule:MF_00482 ;
rdf:subject ?pfs121 ;
rdf:predicate up:annotation ;
rdf:object ?annotation122 .
_:193530 a rdf:Statement ;
up:attribution _:193461 ;
rdf:subject ?pfs121 ;
rdf:predicate up:annotation ;
rdf:object ?annotation122 .
_:193531 a rdf:Statement ;
up:source unirule:MF_00482 ;
rdf:subject ?pfs128 ;
rdf:predicate up:annotation ;
rdf:object ?annotation129 .
_:193532 a rdf:Statement ;
up:attribution _:193462 ;
rdf:subject ?pfs128 ;
rdf:predicate up:annotation ;
rdf:object ?annotation129 .
_:193533 a rdf:Statement ;
up:source unirule:MF_00482 ;
rdf:subject ?pfs135 ;
rdf:predicate up:annotation ;
rdf:object ?annotation136 .
_:193534 a rdf:Statement ;
up:attribution _:193463 ;
rdf:subject ?pfs135 ;
rdf:predicate up:annotation ;
rdf:object ?annotation136 .
_:193535 a rdf:Statement ;
up:source unirule:MF_00482 ;
rdf:subject ?pfs142 ;
rdf:predicate up:annotation ;
rdf:object ?annotation143 .
_:193536 a rdf:Statement ;
up:attribution _:193464 ;
rdf:subject ?pfs142 ;
rdf:predicate up:annotation ;
rdf:object ?annotation143 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00482
#Rule MF_00482 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-03
{
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00482 .
?thisOrganism rdfs:subClassOf+ taxon:1117 .
} UNION {
?this rdfs:seeAlso signature:MF_00482 .
{
?this up:encodedIn up:Plastid .
} UNION {
?this up:encodedIn up:Chloroplast .
} UNION {
?this up:encodedIn up:Cyanelle .
} UNION {
?this up:encodedIn up:Apicoplast .
} UNION {
?this up:encodedIn up:Organellar_chromatophore .
} UNION {
?this up:encodedIn up:Non-photosynthetic_plastid .
}
}
BIND(URI(CONCAT(STR(?this), '#MF_00482a1')) AS ?annotation1) .
BIND(URI(CONCAT(STR(?this), '#MF_00482a3')) AS ?annotation3) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch153 faldo:location ?templateMotifSequenceMatchRegionP0A407154 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A407156 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A407MF_00482149 .
?templateMotifSequenceMatchRegionP0A407154 faldo:begin ?templateMotifSequenceMatchBeginP0A407155 .
?templateMotifSequenceMatchBeginP0A407155 faldo:position ?templateMotifSequenceMatchBeginPositionP0A407150 ;
faldo:reference isoform:P0A407-1 .
?templateMotifSequenceProfileAlignmentOperationP0A407156 edam:has_input signature:MF_00482 ;
rdf:type edam:operation_0300 .
?targetMotifMatch157 faldo:location ?targetMotifMatchRegionMatch158 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00482160 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A407MF_00482151 .
?targetMotifMatchRegionMatch158 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00482159 .
?targetMotifMatchRegionMatchBeginMF_00482159 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00482152 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00482160 edam:has_input signature:MF_00482 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A407MF_00482149, 1, (STRLEN(?templateMotifCigarP0A407MF_00482149) - STRLEN(REPLACE(?templateMotifCigarP0A407MF_00482149, CONCAT('^(?:-*[^-]){', STR(((39 - ?templateMotifSequenceMatchBeginPositionP0A407150) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1161) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A407MF_00482151, 1, (STRLEN(?targetMotifMatchCigarP0A407MF_00482151) - STRLEN(REPLACE(?targetMotifMatchCigarP0A407MF_00482151, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1161), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A407MF_00482151, 1, (STRLEN(?targetMotifMatchCigarP0A407MF_00482151) - STRLEN(REPLACE(?targetMotifMatchCigarP0A407MF_00482151, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1161), '}'), '')))), '[^-]', ''))) AS ?step2162) .
BIND(((?step2162 + ?targetMotifMatchRegionMatchBeginPositionMF_00482152) - 1) AS ?thisPositionOn24) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A407MF_00482149, 1, (STRLEN(?templateMotifCigarP0A407MF_00482149) - STRLEN(REPLACE(?templateMotifCigarP0A407MF_00482149, CONCAT('^(?:-*[^-]){', STR(((70 - ?templateMotifSequenceMatchBeginPositionP0A407150) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1163) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A407MF_00482151, 1, (STRLEN(?targetMotifMatchCigarP0A407MF_00482151) - STRLEN(REPLACE(?targetMotifMatchCigarP0A407MF_00482151, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1163), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A407MF_00482151, 1, (STRLEN(?targetMotifMatchCigarP0A407MF_00482151) - STRLEN(REPLACE(?targetMotifMatchCigarP0A407MF_00482151, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1163), '}'), '')))), '[^-]', ''))) AS ?step2164) .
BIND(((?step2164 + ?targetMotifMatchRegionMatchBeginPositionMF_00482152) - 1) AS ?thisPositionOn25) .
BIND(?this AS ?pfs1t165) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb22) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse23) .
FILTER ((BOUND(?thisPositionOn24) && BOUND(?thisPositionOn25))) .
BIND(URI(CONCAT(STR(?this), '#MF_00482a21')) AS ?annotation21) .
BIND(?this AS ?pfs20) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch170 faldo:location ?templateMotifSequenceMatchRegionP0A407171 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A407173 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A407MF_00482166 .
?templateMotifSequenceMatchRegionP0A407171 faldo:begin ?templateMotifSequenceMatchBeginP0A407172 .
?templateMotifSequenceMatchBeginP0A407172 faldo:position ?templateMotifSequenceMatchBeginPositionP0A407167 ;
faldo:reference isoform:P0A407-1 .
?templateMotifSequenceProfileAlignmentOperationP0A407173 edam:has_input signature:MF_00482 ;
rdf:type edam:operation_0300 .
?targetMotifMatch174 faldo:location ?targetMotifMatchRegionMatch175 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00482177 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A407MF_00482168 .
?targetMotifMatchRegionMatch175 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00482176 .
?targetMotifMatchRegionMatchBeginMF_00482176 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00482169 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00482177 edam:has_input signature:MF_00482 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A407MF_00482166, 1, (STRLEN(?templateMotifCigarP0A407MF_00482166) - STRLEN(REPLACE(?templateMotifCigarP0A407MF_00482166, CONCAT('^(?:-*[^-]){', STR(((132 - ?templateMotifSequenceMatchBeginPositionP0A407167) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1178) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A407MF_00482168, 1, (STRLEN(?targetMotifMatchCigarP0A407MF_00482168) - STRLEN(REPLACE(?targetMotifMatchCigarP0A407MF_00482168, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1178), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A407MF_00482168, 1, (STRLEN(?targetMotifMatchCigarP0A407MF_00482168) - STRLEN(REPLACE(?targetMotifMatchCigarP0A407MF_00482168, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1178), '}'), '')))), '[^-]', ''))) AS ?step2179) .
BIND(((?step2179 + ?targetMotifMatchRegionMatchBeginPositionMF_00482169) - 1) AS ?thisPositionOn30) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A407MF_00482166, 1, (STRLEN(?templateMotifCigarP0A407MF_00482166) - STRLEN(REPLACE(?templateMotifCigarP0A407MF_00482166, CONCAT('^(?:-*[^-]){', STR(((156 - ?templateMotifSequenceMatchBeginPositionP0A407167) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1180) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A407MF_00482168, 1, (STRLEN(?targetMotifMatchCigarP0A407MF_00482168) - STRLEN(REPLACE(?targetMotifMatchCigarP0A407MF_00482168, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1180), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A407MF_00482168, 1, (STRLEN(?targetMotifMatchCigarP0A407MF_00482168) - STRLEN(REPLACE(?targetMotifMatchCigarP0A407MF_00482168, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1180), '}'), '')))), '[^-]', ''))) AS ?step2181) .
BIND(((?step2181 + ?targetMotifMatchRegionMatchBeginPositionMF_00482169) - 1) AS ?thisPositionOn31) .
BIND(?this AS ?pfs1t182) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb28) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse29) .
FILTER ((BOUND(?thisPositionOn30) && BOUND(?thisPositionOn31))) .
BIND(URI(CONCAT(STR(?this), '#MF_00482a27')) AS ?annotation27) .
BIND(?this AS ?pfs26) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch187 faldo:location ?templateMotifSequenceMatchRegionP0A407188 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A407190 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A407MF_00482183 .
?templateMotifSequenceMatchRegionP0A407188 faldo:begin ?templateMotifSequenceMatchBeginP0A407189 .
?templateMotifSequenceMatchBeginP0A407189 faldo:position ?templateMotifSequenceMatchBeginPositionP0A407184 ;
faldo:reference isoform:P0A407-1 .
?templateMotifSequenceProfileAlignmentOperationP0A407190 edam:has_input signature:MF_00482 ;
rdf:type edam:operation_0300 .
?targetMotifMatch191 faldo:location ?targetMotifMatchRegionMatch192 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00482194 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A407MF_00482185 .
?targetMotifMatchRegionMatch192 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00482193 .
?targetMotifMatchRegionMatchBeginMF_00482193 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00482186 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00482194 edam:has_input signature:MF_00482 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A407MF_00482183, 1, (STRLEN(?templateMotifCigarP0A407MF_00482183) - STRLEN(REPLACE(?templateMotifCigarP0A407MF_00482183, CONCAT('^(?:-*[^-]){', STR(((173 - ?templateMotifSequenceMatchBeginPositionP0A407184) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1195) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A407MF_00482185, 1, (STRLEN(?targetMotifMatchCigarP0A407MF_00482185) - STRLEN(REPLACE(?targetMotifMatchCigarP0A407MF_00482185, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1195), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A407MF_00482185, 1, (STRLEN(?targetMotifMatchCigarP0A407MF_00482185) - STRLEN(REPLACE(?targetMotifMatchCigarP0A407MF_00482185, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1195), '}'), '')))), '[^-]', ''))) AS ?step2196) .
BIND(((?step2196 + ?targetMotifMatchRegionMatchBeginPositionMF_00482186) - 1) AS ?thisPositionOn36) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A407MF_00482183, 1, (STRLEN(?templateMotifCigarP0A407MF_00482183) - STRLEN(REPLACE(?templateMotifCigarP0A407MF_00482183, CONCAT('^(?:-*[^-]){', STR(((195 - ?templateMotifSequenceMatchBeginPositionP0A407184) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1197) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A407MF_00482185, 1, (STRLEN(?targetMotifMatchCigarP0A407MF_00482185) - STRLEN(REPLACE(?targetMotifMatchCigarP0A407MF_00482185, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1197), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A407MF_00482185, 1, (STRLEN(?targetMotifMatchCigarP0A407MF_00482185) - STRLEN(REPLACE(?targetMotifMatchCigarP0A407MF_00482185, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1197), '}'), '')))), '[^-]', ''))) AS ?step2198) .
BIND(((?step2198 + ?targetMotifMatchRegionMatchBeginPositionMF_00482186) - 1) AS ?thisPositionOn37) .
BIND(?this AS ?pfs1t199) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfsb34) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfse35) .
FILTER ((BOUND(?thisPositionOn36) && BOUND(?thisPositionOn37))) .
BIND(URI(CONCAT(STR(?this), '#MF_00482a33')) AS ?annotation33) .
BIND(?this AS ?pfs32) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch204 faldo:location ?templateMotifSequenceMatchRegionP0A407205 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A407207 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A407MF_00482200 .
?templateMotifSequenceMatchRegionP0A407205 faldo:begin ?templateMotifSequenceMatchBeginP0A407206 .
?templateMotifSequenceMatchBeginP0A407206 faldo:position ?templateMotifSequenceMatchBeginPositionP0A407201 ;
faldo:reference isoform:P0A407-1 .
?templateMotifSequenceProfileAlignmentOperationP0A407207 edam:has_input signature:MF_00482 ;
rdf:type edam:operation_0300 .
?targetMotifMatch208 faldo:location ?targetMotifMatchRegionMatch209 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00482211 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A407MF_00482202 .
?targetMotifMatchRegionMatch209 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00482210 .
?targetMotifMatchRegionMatchBeginMF_00482210 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00482203 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00482211 edam:has_input signature:MF_00482 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A407MF_00482200, 1, (STRLEN(?templateMotifCigarP0A407MF_00482200) - STRLEN(REPLACE(?templateMotifCigarP0A407MF_00482200, CONCAT('^(?:-*[^-]){', STR(((270 - ?templateMotifSequenceMatchBeginPositionP0A407201) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1212) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A407MF_00482202, 1, (STRLEN(?targetMotifMatchCigarP0A407MF_00482202) - STRLEN(REPLACE(?targetMotifMatchCigarP0A407MF_00482202, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1212), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A407MF_00482202, 1, (STRLEN(?targetMotifMatchCigarP0A407MF_00482202) - STRLEN(REPLACE(?targetMotifMatchCigarP0A407MF_00482202, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1212), '}'), '')))), '[^-]', ''))) AS ?step2213) .
BIND(((?step2213 + ?targetMotifMatchRegionMatchBeginPositionMF_00482203) - 1) AS ?thisPositionOn42) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A407MF_00482200, 1, (STRLEN(?templateMotifCigarP0A407MF_00482200) - STRLEN(REPLACE(?templateMotifCigarP0A407MF_00482200, CONCAT('^(?:-*[^-]){', STR(((287 - ?templateMotifSequenceMatchBeginPositionP0A407201) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1214) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A407MF_00482202, 1, (STRLEN(?targetMotifMatchCigarP0A407MF_00482202) - STRLEN(REPLACE(?targetMotifMatchCigarP0A407MF_00482202, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1214), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A407MF_00482202, 1, (STRLEN(?targetMotifMatchCigarP0A407MF_00482202) - STRLEN(REPLACE(?targetMotifMatchCigarP0A407MF_00482202, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1214), '}'), '')))), '[^-]', ''))) AS ?step2215) .
BIND(((?step2215 + ?targetMotifMatchRegionMatchBeginPositionMF_00482203) - 1) AS ?thisPositionOn43) .
BIND(?this AS ?pfs1t216) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb40) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse41) .
FILTER ((BOUND(?thisPositionOn42) && BOUND(?thisPositionOn43))) .
BIND(URI(CONCAT(STR(?this), '#MF_00482a39')) AS ?annotation39) .
BIND(?this AS ?pfs38) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch221 faldo:location ?templateMotifSequenceMatchRegionP0A407222 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A407224 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A407MF_00482217 .
?templateMotifSequenceMatchRegionP0A407222 faldo:begin ?templateMotifSequenceMatchBeginP0A407223 .
?templateMotifSequenceMatchBeginP0A407223 faldo:position ?templateMotifSequenceMatchBeginPositionP0A407218 ;
faldo:reference isoform:P0A407-1 .
?templateMotifSequenceProfileAlignmentOperationP0A407224 edam:has_input signature:MF_00482 ;
rdf:type edam:operation_0300 .
?targetMotifMatch225 faldo:location ?targetMotifMatchRegionMatch226 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00482228 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A407MF_00482219 .
?targetMotifMatchRegionMatch226 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00482227 .
?targetMotifMatchRegionMatchBeginMF_00482227 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00482220 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00482228 edam:has_input signature:MF_00482 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A407MF_00482217, 1, (STRLEN(?templateMotifCigarP0A407MF_00482217) - STRLEN(REPLACE(?templateMotifCigarP0A407MF_00482217, CONCAT('^(?:-*[^-]){', STR(((335 - ?templateMotifSequenceMatchBeginPositionP0A407218) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1229) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A407MF_00482219, 1, (STRLEN(?targetMotifMatchCigarP0A407MF_00482219) - STRLEN(REPLACE(?targetMotifMatchCigarP0A407MF_00482219, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1229), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A407MF_00482219, 1, (STRLEN(?targetMotifMatchCigarP0A407MF_00482219) - STRLEN(REPLACE(?targetMotifMatchCigarP0A407MF_00482219, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1229), '}'), '')))), '[^-]', ''))) AS ?step2230) .
BIND(((?step2230 + ?targetMotifMatchRegionMatchBeginPositionMF_00482220) - 1) AS ?thisPositionOn48) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A407MF_00482217, 1, (STRLEN(?templateMotifCigarP0A407MF_00482217) - STRLEN(REPLACE(?templateMotifCigarP0A407MF_00482217, CONCAT('^(?:-*[^-]){', STR(((358 - ?templateMotifSequenceMatchBeginPositionP0A407218) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1231) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A407MF_00482219, 1, (STRLEN(?targetMotifMatchCigarP0A407MF_00482219) - STRLEN(REPLACE(?targetMotifMatchCigarP0A407MF_00482219, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1231), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A407MF_00482219, 1, (STRLEN(?targetMotifMatchCigarP0A407MF_00482219) - STRLEN(REPLACE(?targetMotifMatchCigarP0A407MF_00482219, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1231), '}'), '')))), '[^-]', ''))) AS ?step2232) .
BIND(((?step2232 + ?targetMotifMatchRegionMatchBeginPositionMF_00482220) - 1) AS ?thisPositionOn49) .
BIND(?this AS ?pfs1t233) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfsb46) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfse47) .
FILTER ((BOUND(?thisPositionOn48) && BOUND(?thisPositionOn49))) .
BIND(URI(CONCAT(STR(?this), '#MF_00482a45')) AS ?annotation45) .
BIND(?this AS ?pfs44) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch238 faldo:location ?templateMotifSequenceMatchRegionP0A407239 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A407241 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A407MF_00482234 .
?templateMotifSequenceMatchRegionP0A407239 faldo:begin ?templateMotifSequenceMatchBeginP0A407240 .
?templateMotifSequenceMatchBeginP0A407240 faldo:position ?templateMotifSequenceMatchBeginPositionP0A407235 ;
faldo:reference isoform:P0A407-1 .
?templateMotifSequenceProfileAlignmentOperationP0A407241 edam:has_input signature:MF_00482 ;
rdf:type edam:operation_0300 .
?targetMotifMatch242 faldo:location ?targetMotifMatchRegionMatch243 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00482245 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A407MF_00482236 .
?targetMotifMatchRegionMatch243 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00482244 .
?targetMotifMatchRegionMatchBeginMF_00482244 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00482237 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00482245 edam:has_input signature:MF_00482 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A407MF_00482234, 1, (STRLEN(?templateMotifCigarP0A407MF_00482234) - STRLEN(REPLACE(?templateMotifCigarP0A407MF_00482234, CONCAT('^(?:-*[^-]){', STR(((369 - ?templateMotifSequenceMatchBeginPositionP0A407235) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1246) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A407MF_00482236, 1, (STRLEN(?targetMotifMatchCigarP0A407MF_00482236) - STRLEN(REPLACE(?targetMotifMatchCigarP0A407MF_00482236, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1246), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A407MF_00482236, 1, (STRLEN(?targetMotifMatchCigarP0A407MF_00482236) - STRLEN(REPLACE(?targetMotifMatchCigarP0A407MF_00482236, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1246), '}'), '')))), '[^-]', ''))) AS ?step2247) .
BIND(((?step2247 + ?targetMotifMatchRegionMatchBeginPositionMF_00482237) - 1) AS ?thisPositionOn54) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A407MF_00482234, 1, (STRLEN(?templateMotifCigarP0A407MF_00482234) - STRLEN(REPLACE(?templateMotifCigarP0A407MF_00482234, CONCAT('^(?:-*[^-]){', STR(((400 - ?templateMotifSequenceMatchBeginPositionP0A407235) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1248) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A407MF_00482236, 1, (STRLEN(?targetMotifMatchCigarP0A407MF_00482236) - STRLEN(REPLACE(?targetMotifMatchCigarP0A407MF_00482236, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1248), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A407MF_00482236, 1, (STRLEN(?targetMotifMatchCigarP0A407MF_00482236) - STRLEN(REPLACE(?targetMotifMatchCigarP0A407MF_00482236, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1248), '}'), '')))), '[^-]', ''))) AS ?step2249) .
BIND(((?step2249 + ?targetMotifMatchRegionMatchBeginPositionMF_00482237) - 1) AS ?thisPositionOn55) .
BIND(?this AS ?pfs1t250) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfsb52) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfse53) .
FILTER ((BOUND(?thisPositionOn54) && BOUND(?thisPositionOn55))) .
BIND(URI(CONCAT(STR(?this), '#MF_00482a51')) AS ?annotation51) .
BIND(?this AS ?pfs50) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch255 faldo:location ?templateMotifSequenceMatchRegionP0A407256 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A407258 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A407MF_00482251 .
?templateMotifSequenceMatchRegionP0A407256 faldo:begin ?templateMotifSequenceMatchBeginP0A407257 .
?templateMotifSequenceMatchBeginP0A407257 faldo:position ?templateMotifSequenceMatchBeginPositionP0A407252 ;
faldo:reference isoform:P0A407-1 .
?templateMotifSequenceProfileAlignmentOperationP0A407258 edam:has_input signature:MF_00482 ;
rdf:type edam:operation_0300 .
?targetMotifMatch259 faldo:location ?targetMotifMatchRegionMatch260 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00482262 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A407MF_00482253 .
?targetMotifMatchRegionMatch260 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00482261 .
?targetMotifMatchRegionMatchBeginMF_00482261 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00482254 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00482262 edam:has_input signature:MF_00482 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A407MF_00482251, 1, (STRLEN(?templateMotifCigarP0A407MF_00482251) - STRLEN(REPLACE(?templateMotifCigarP0A407MF_00482251, CONCAT('^(?:-*[^-]){', STR(((420 - ?templateMotifSequenceMatchBeginPositionP0A407252) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1263) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A407MF_00482253, 1, (STRLEN(?targetMotifMatchCigarP0A407MF_00482253) - STRLEN(REPLACE(?targetMotifMatchCigarP0A407MF_00482253, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1263), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A407MF_00482253, 1, (STRLEN(?targetMotifMatchCigarP0A407MF_00482253) - STRLEN(REPLACE(?targetMotifMatchCigarP0A407MF_00482253, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1263), '}'), '')))), '[^-]', ''))) AS ?step2264) .
BIND(((?step2264 + ?targetMotifMatchRegionMatchBeginPositionMF_00482254) - 1) AS ?thisPositionOn60) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A407MF_00482251, 1, (STRLEN(?templateMotifCigarP0A407MF_00482251) - STRLEN(REPLACE(?templateMotifCigarP0A407MF_00482251, CONCAT('^(?:-*[^-]){', STR(((449 - ?templateMotifSequenceMatchBeginPositionP0A407252) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1265) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A407MF_00482253, 1, (STRLEN(?targetMotifMatchCigarP0A407MF_00482253) - STRLEN(REPLACE(?targetMotifMatchCigarP0A407MF_00482253, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1265), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A407MF_00482253, 1, (STRLEN(?targetMotifMatchCigarP0A407MF_00482253) - STRLEN(REPLACE(?targetMotifMatchCigarP0A407MF_00482253, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1265), '}'), '')))), '[^-]', ''))) AS ?step2266) .
BIND(((?step2266 + ?targetMotifMatchRegionMatchBeginPositionMF_00482254) - 1) AS ?thisPositionOn61) .
BIND(?this AS ?pfs1t267) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfsb58) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfse59) .
FILTER ((BOUND(?thisPositionOn60) && BOUND(?thisPositionOn61))) .
BIND(URI(CONCAT(STR(?this), '#MF_00482a57')) AS ?annotation57) .
BIND(?this AS ?pfs56) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch272 faldo:location ?templateMotifSequenceMatchRegionP0A407273 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A407275 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A407MF_00482268 .
?templateMotifSequenceMatchRegionP0A407273 faldo:begin ?templateMotifSequenceMatchBeginP0A407274 .
?templateMotifSequenceMatchBeginP0A407274 faldo:position ?templateMotifSequenceMatchBeginPositionP0A407269 ;
faldo:reference isoform:P0A407-1 .
?templateMotifSequenceProfileAlignmentOperationP0A407275 edam:has_input signature:MF_00482 ;
rdf:type edam:operation_0300 .
?targetMotifMatch276 faldo:location ?targetMotifMatchRegionMatch277 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00482279 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A407MF_00482270 .
?targetMotifMatchRegionMatch277 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00482278 .
?targetMotifMatchRegionMatchBeginMF_00482278 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00482271 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00482279 edam:has_input signature:MF_00482 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A407MF_00482268, 1, (STRLEN(?templateMotifCigarP0A407MF_00482268) - STRLEN(REPLACE(?templateMotifCigarP0A407MF_00482268, CONCAT('^(?:-*[^-]){', STR(((521 - ?templateMotifSequenceMatchBeginPositionP0A407269) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1280) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A407MF_00482270, 1, (STRLEN(?targetMotifMatchCigarP0A407MF_00482270) - STRLEN(REPLACE(?targetMotifMatchCigarP0A407MF_00482270, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1280), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A407MF_00482270, 1, (STRLEN(?targetMotifMatchCigarP0A407MF_00482270) - STRLEN(REPLACE(?targetMotifMatchCigarP0A407MF_00482270, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1280), '}'), '')))), '[^-]', ''))) AS ?step2281) .
BIND(((?step2281 + ?targetMotifMatchRegionMatchBeginPositionMF_00482271) - 1) AS ?thisPositionOn66) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A407MF_00482268, 1, (STRLEN(?templateMotifCigarP0A407MF_00482268) - STRLEN(REPLACE(?templateMotifCigarP0A407MF_00482268, CONCAT('^(?:-*[^-]){', STR(((545 - ?templateMotifSequenceMatchBeginPositionP0A407269) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1282) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A407MF_00482270, 1, (STRLEN(?targetMotifMatchCigarP0A407MF_00482270) - STRLEN(REPLACE(?targetMotifMatchCigarP0A407MF_00482270, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1282), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A407MF_00482270, 1, (STRLEN(?targetMotifMatchCigarP0A407MF_00482270) - STRLEN(REPLACE(?targetMotifMatchCigarP0A407MF_00482270, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1282), '}'), '')))), '[^-]', ''))) AS ?step2283) .
BIND(((?step2283 + ?targetMotifMatchRegionMatchBeginPositionMF_00482271) - 1) AS ?thisPositionOn67) .
BIND(?this AS ?pfs1t284) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfsb64) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfse65) .
FILTER ((BOUND(?thisPositionOn66) && BOUND(?thisPositionOn67))) .
BIND(URI(CONCAT(STR(?this), '#MF_00482a63')) AS ?annotation63) .
BIND(?this AS ?pfs62) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch289 faldo:location ?templateMotifSequenceMatchRegionP0A407290 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A407292 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A407MF_00482285 .
?templateMotifSequenceMatchRegionP0A407290 faldo:begin ?templateMotifSequenceMatchBeginP0A407291 .
?templateMotifSequenceMatchBeginP0A407291 faldo:position ?templateMotifSequenceMatchBeginPositionP0A407286 ;
faldo:reference isoform:P0A407-1 .
?templateMotifSequenceProfileAlignmentOperationP0A407292 edam:has_input signature:MF_00482 ;
rdf:type edam:operation_0300 .
?targetMotifMatch293 faldo:location ?targetMotifMatchRegionMatch294 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00482296 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A407MF_00482287 .
?targetMotifMatchRegionMatch294 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00482295 .
?targetMotifMatchRegionMatchBeginMF_00482295 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00482288 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00482296 edam:has_input signature:MF_00482 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A407MF_00482285, 1, (STRLEN(?templateMotifCigarP0A407MF_00482285) - STRLEN(REPLACE(?templateMotifCigarP0A407MF_00482285, CONCAT('^(?:-*[^-]){', STR(((579 - ?templateMotifSequenceMatchBeginPositionP0A407286) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1297) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A407MF_00482287, 1, (STRLEN(?targetMotifMatchCigarP0A407MF_00482287) - STRLEN(REPLACE(?targetMotifMatchCigarP0A407MF_00482287, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1297), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A407MF_00482287, 1, (STRLEN(?targetMotifMatchCigarP0A407MF_00482287) - STRLEN(REPLACE(?targetMotifMatchCigarP0A407MF_00482287, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1297), '}'), '')))), '[^-]', ''))) AS ?step2298) .
BIND(((?step2298 + ?targetMotifMatchRegionMatchBeginPositionMF_00482288) - 1) AS ?thisPositionOn72) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A407MF_00482285, 1, (STRLEN(?templateMotifCigarP0A407MF_00482285) - STRLEN(REPLACE(?templateMotifCigarP0A407MF_00482285, CONCAT('^(?:-*[^-]){', STR(((610 - ?templateMotifSequenceMatchBeginPositionP0A407286) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1299) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A407MF_00482287, 1, (STRLEN(?targetMotifMatchCigarP0A407MF_00482287) - STRLEN(REPLACE(?targetMotifMatchCigarP0A407MF_00482287, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1299), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A407MF_00482287, 1, (STRLEN(?targetMotifMatchCigarP0A407MF_00482287) - STRLEN(REPLACE(?targetMotifMatchCigarP0A407MF_00482287, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1299), '}'), '')))), '[^-]', ''))) AS ?step2300) .
BIND(((?step2300 + ?targetMotifMatchRegionMatchBeginPositionMF_00482288) - 1) AS ?thisPositionOn73) .
BIND(?this AS ?pfs1t301) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn72))) AS ?pfsb70) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfse71) .
FILTER ((BOUND(?thisPositionOn72) && BOUND(?thisPositionOn73))) .
BIND(URI(CONCAT(STR(?this), '#MF_00482a69')) AS ?annotation69) .
BIND(?this AS ?pfs68) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch306 faldo:location ?templateMotifSequenceMatchRegionP0A407307 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A407309 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A407MF_00482302 .
?templateMotifSequenceMatchRegionP0A407307 faldo:begin ?templateMotifSequenceMatchBeginP0A407308 .
?templateMotifSequenceMatchBeginP0A407308 faldo:position ?templateMotifSequenceMatchBeginPositionP0A407303 ;
faldo:reference isoform:P0A407-1 .
?templateMotifSequenceProfileAlignmentOperationP0A407309 edam:has_input signature:MF_00482 ;
rdf:type edam:operation_0300 .
?targetMotifMatch310 faldo:location ?targetMotifMatchRegionMatch311 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00482313 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A407MF_00482304 .
?targetMotifMatchRegionMatch311 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00482312 .
?targetMotifMatchRegionMatchBeginMF_00482312 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00482305 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00482313 edam:has_input signature:MF_00482 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A407MF_00482302, 1, (STRLEN(?templateMotifCigarP0A407MF_00482302) - STRLEN(REPLACE(?templateMotifCigarP0A407MF_00482302, CONCAT('^(?:-*[^-]){', STR(((651 - ?templateMotifSequenceMatchBeginPositionP0A407303) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1314) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A407MF_00482304, 1, (STRLEN(?targetMotifMatchCigarP0A407MF_00482304) - STRLEN(REPLACE(?targetMotifMatchCigarP0A407MF_00482304, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1314), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A407MF_00482304, 1, (STRLEN(?targetMotifMatchCigarP0A407MF_00482304) - STRLEN(REPLACE(?targetMotifMatchCigarP0A407MF_00482304, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1314), '}'), '')))), '[^-]', ''))) AS ?step2315) .
BIND(((?step2315 + ?targetMotifMatchRegionMatchBeginPositionMF_00482305) - 1) AS ?thisPositionOn78) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A407MF_00482302, 1, (STRLEN(?templateMotifCigarP0A407MF_00482302) - STRLEN(REPLACE(?templateMotifCigarP0A407MF_00482302, CONCAT('^(?:-*[^-]){', STR(((672 - ?templateMotifSequenceMatchBeginPositionP0A407303) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1316) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A407MF_00482304, 1, (STRLEN(?targetMotifMatchCigarP0A407MF_00482304) - STRLEN(REPLACE(?targetMotifMatchCigarP0A407MF_00482304, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1316), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A407MF_00482304, 1, (STRLEN(?targetMotifMatchCigarP0A407MF_00482304) - STRLEN(REPLACE(?targetMotifMatchCigarP0A407MF_00482304, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1316), '}'), '')))), '[^-]', ''))) AS ?step2317) .
BIND(((?step2317 + ?targetMotifMatchRegionMatchBeginPositionMF_00482305) - 1) AS ?thisPositionOn79) .
BIND(?this AS ?pfs1t318) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn78))) AS ?pfsb76) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn79))) AS ?pfse77) .
FILTER ((BOUND(?thisPositionOn78) && BOUND(?thisPositionOn79))) .
BIND(URI(CONCAT(STR(?this), '#MF_00482a75')) AS ?annotation75) .
BIND(?this AS ?pfs74) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch323 faldo:location ?templateMotifSequenceMatchRegionP0A407324 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A407326 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A407MF_00482319 .
?templateMotifSequenceMatchRegionP0A407324 faldo:begin ?templateMotifSequenceMatchBeginP0A407325 .
?templateMotifSequenceMatchBeginP0A407325 faldo:position ?templateMotifSequenceMatchBeginPositionP0A407320 ;
faldo:reference isoform:P0A407-1 .
?templateMotifSequenceProfileAlignmentOperationP0A407326 edam:has_input signature:MF_00482 ;
rdf:type edam:operation_0300 .
?targetMotifMatch327 faldo:location ?targetMotifMatchRegionMatch328 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00482330 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A407MF_00482321 .
?targetMotifMatchRegionMatch328 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00482329 .
?targetMotifMatchRegionMatchBeginMF_00482329 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00482322 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00482330 edam:has_input signature:MF_00482 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A407MF_00482319, 1, (STRLEN(?templateMotifCigarP0A407MF_00482319) - STRLEN(REPLACE(?templateMotifCigarP0A407MF_00482319, CONCAT('^(?:-*[^-]){', STR(((709 - ?templateMotifSequenceMatchBeginPositionP0A407320) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1331) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A407MF_00482321, 1, (STRLEN(?targetMotifMatchCigarP0A407MF_00482321) - STRLEN(REPLACE(?targetMotifMatchCigarP0A407MF_00482321, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1331), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A407MF_00482321, 1, (STRLEN(?targetMotifMatchCigarP0A407MF_00482321) - STRLEN(REPLACE(?targetMotifMatchCigarP0A407MF_00482321, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1331), '}'), '')))), '[^-]', ''))) AS ?step2332) .
BIND(((?step2332 + ?targetMotifMatchRegionMatchBeginPositionMF_00482322) - 1) AS ?thisPositionOn84) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A407MF_00482319, 1, (STRLEN(?templateMotifCigarP0A407MF_00482319) - STRLEN(REPLACE(?templateMotifCigarP0A407MF_00482319, CONCAT('^(?:-*[^-]){', STR(((737 - ?templateMotifSequenceMatchBeginPositionP0A407320) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1333) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A407MF_00482321, 1, (STRLEN(?targetMotifMatchCigarP0A407MF_00482321) - STRLEN(REPLACE(?targetMotifMatchCigarP0A407MF_00482321, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1333), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A407MF_00482321, 1, (STRLEN(?targetMotifMatchCigarP0A407MF_00482321) - STRLEN(REPLACE(?targetMotifMatchCigarP0A407MF_00482321, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1333), '}'), '')))), '[^-]', ''))) AS ?step2334) .
BIND(((?step2334 + ?targetMotifMatchRegionMatchBeginPositionMF_00482322) - 1) AS ?thisPositionOn85) .
BIND(?this AS ?pfs1t335) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn84))) AS ?pfsb82) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn85))) AS ?pfse83) .
FILTER ((BOUND(?thisPositionOn84) && BOUND(?thisPositionOn85))) .
BIND(URI(CONCAT(STR(?this), '#MF_00482a81')) AS ?annotation81) .
BIND(?this AS ?pfs80) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch340 faldo:location ?templateMotifSequenceMatchRegionP0A407341 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A407343 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A407MF_00482336 .
?templateMotifSequenceMatchRegionP0A407341 faldo:begin ?templateMotifSequenceMatchBeginP0A407342 .
?templateMotifSequenceMatchBeginP0A407342 faldo:position ?templateMotifSequenceMatchBeginPositionP0A407337 ;
faldo:reference isoform:P0A407-1 .
?templateMotifSequenceProfileAlignmentOperationP0A407343 edam:has_input signature:MF_00482 ;
rdf:type edam:operation_0300 .
?targetMotifMatch344 faldo:location ?targetMotifMatchRegionMatch345 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00482347 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A407MF_00482338 .
?targetMotifMatchRegionMatch345 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00482346 .
?targetMotifMatchRegionMatchBeginMF_00482346 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00482339 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00482347 edam:has_input signature:MF_00482 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A407MF_00482336, 1, (STRLEN(?templateMotifCigarP0A407MF_00482336) - STRLEN(REPLACE(?templateMotifCigarP0A407MF_00482336, CONCAT('^(?:-*[^-]){', STR(((566 - ?templateMotifSequenceMatchBeginPositionP0A407337) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1348) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A407MF_00482338, 1, (STRLEN(?targetMotifMatchCigarP0A407MF_00482338) - STRLEN(REPLACE(?targetMotifMatchCigarP0A407MF_00482338, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1348), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A407MF_00482338, 1, (STRLEN(?targetMotifMatchCigarP0A407MF_00482338) - STRLEN(REPLACE(?targetMotifMatchCigarP0A407MF_00482338, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1348), '}'), '')))), '[^-]', ''))) AS ?step2349) .
BIND(((?step2349 + ?targetMotifMatchRegionMatchBeginPositionMF_00482339) - 1) AS ?thisPositionOn91) .
BIND(?thisPositionOn91 AS ?thisPositionOn92) .
BIND(?this AS ?pfs1t350) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn91))) AS ?pfsb88) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn92))) AS ?pfse89) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn91, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_00482a87')) AS ?annotation87) .
BIND(?this AS ?pfs86) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch355 faldo:location ?templateMotifSequenceMatchRegionP0A407356 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A407358 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A407MF_00482351 .
?templateMotifSequenceMatchRegionP0A407356 faldo:begin ?templateMotifSequenceMatchBeginP0A407357 .
?templateMotifSequenceMatchBeginP0A407357 faldo:position ?templateMotifSequenceMatchBeginPositionP0A407352 ;
faldo:reference isoform:P0A407-1 .
?templateMotifSequenceProfileAlignmentOperationP0A407358 edam:has_input signature:MF_00482 ;
rdf:type edam:operation_0300 .
?targetMotifMatch359 faldo:location ?targetMotifMatchRegionMatch360 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00482362 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A407MF_00482353 .
?targetMotifMatchRegionMatch360 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00482361 .
?targetMotifMatchRegionMatchBeginMF_00482361 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00482354 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00482362 edam:has_input signature:MF_00482 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A407MF_00482351, 1, (STRLEN(?templateMotifCigarP0A407MF_00482351) - STRLEN(REPLACE(?templateMotifCigarP0A407MF_00482351, CONCAT('^(?:-*[^-]){', STR(((575 - ?templateMotifSequenceMatchBeginPositionP0A407352) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1363) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A407MF_00482353, 1, (STRLEN(?targetMotifMatchCigarP0A407MF_00482353) - STRLEN(REPLACE(?targetMotifMatchCigarP0A407MF_00482353, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1363), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A407MF_00482353, 1, (STRLEN(?targetMotifMatchCigarP0A407MF_00482353) - STRLEN(REPLACE(?targetMotifMatchCigarP0A407MF_00482353, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1363), '}'), '')))), '[^-]', ''))) AS ?step2364) .
BIND(((?step2364 + ?targetMotifMatchRegionMatchBeginPositionMF_00482354) - 1) AS ?thisPositionOn98) .
BIND(?thisPositionOn98 AS ?thisPositionOn99) .
BIND(?this AS ?pfs1t365) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn98))) AS ?pfsb95) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn99))) AS ?pfse96) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn98, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_00482a94')) AS ?annotation94) .
BIND(?this AS ?pfs93) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch370 faldo:location ?templateMotifSequenceMatchRegionP0A407371 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A407373 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A407MF_00482366 .
?templateMotifSequenceMatchRegionP0A407371 faldo:begin ?templateMotifSequenceMatchBeginP0A407372 .
?templateMotifSequenceMatchBeginP0A407372 faldo:position ?templateMotifSequenceMatchBeginPositionP0A407367 ;
faldo:reference isoform:P0A407-1 .
?templateMotifSequenceProfileAlignmentOperationP0A407373 edam:has_input signature:MF_00482 ;
rdf:type edam:operation_0300 .
?targetMotifMatch374 faldo:location ?targetMotifMatchRegionMatch375 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00482377 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A407MF_00482368 .
?targetMotifMatchRegionMatch375 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00482376 .
?targetMotifMatchRegionMatchBeginMF_00482376 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00482369 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00482377 edam:has_input signature:MF_00482 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A407MF_00482366, 1, (STRLEN(?templateMotifCigarP0A407MF_00482366) - STRLEN(REPLACE(?templateMotifCigarP0A407MF_00482366, CONCAT('^(?:-*[^-]){', STR(((678 - ?templateMotifSequenceMatchBeginPositionP0A407367) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1378) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A407MF_00482368, 1, (STRLEN(?targetMotifMatchCigarP0A407MF_00482368) - STRLEN(REPLACE(?targetMotifMatchCigarP0A407MF_00482368, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1378), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A407MF_00482368, 1, (STRLEN(?targetMotifMatchCigarP0A407MF_00482368) - STRLEN(REPLACE(?targetMotifMatchCigarP0A407MF_00482368, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1378), '}'), '')))), '[^-]', ''))) AS ?step2379) .
BIND(((?step2379 + ?targetMotifMatchRegionMatchBeginPositionMF_00482369) - 1) AS ?thisPositionOn105) .
BIND(?thisPositionOn105 AS ?thisPositionOn106) .
BIND(?this AS ?pfs1t380) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn105))) AS ?pfsb102) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn106))) AS ?pfse103) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn105, 1) = 'W')) .
BIND(URI(CONCAT(STR(?this), '#MF_00482a101')) AS ?annotation101) .
BIND(?this AS ?pfs100) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch385 faldo:location ?templateMotifSequenceMatchRegionP0A407386 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A407388 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A407MF_00482381 .
?templateMotifSequenceMatchRegionP0A407386 faldo:begin ?templateMotifSequenceMatchBeginP0A407387 .
?templateMotifSequenceMatchBeginP0A407387 faldo:position ?templateMotifSequenceMatchBeginPositionP0A407382 ;
faldo:reference isoform:P0A407-1 .
?templateMotifSequenceProfileAlignmentOperationP0A407388 edam:has_input signature:MF_00482 ;
rdf:type edam:operation_0300 .
?targetMotifMatch389 faldo:location ?targetMotifMatchRegionMatch390 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00482392 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A407MF_00482383 .
?targetMotifMatchRegionMatch390 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00482391 .
?targetMotifMatchRegionMatchBeginMF_00482391 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00482384 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00482392 edam:has_input signature:MF_00482 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:1218 .
})) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A407MF_00482381, 1, (STRLEN(?templateMotifCigarP0A407MF_00482381) - STRLEN(REPLACE(?templateMotifCigarP0A407MF_00482381, CONCAT('^(?:-*[^-]){', STR(((661 - ?templateMotifSequenceMatchBeginPositionP0A407382) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1393) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A407MF_00482383, 1, (STRLEN(?targetMotifMatchCigarP0A407MF_00482383) - STRLEN(REPLACE(?targetMotifMatchCigarP0A407MF_00482383, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1393), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A407MF_00482383, 1, (STRLEN(?targetMotifMatchCigarP0A407MF_00482383) - STRLEN(REPLACE(?targetMotifMatchCigarP0A407MF_00482383, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1393), '}'), '')))), '[^-]', ''))) AS ?step2394) .
BIND(((?step2394 + ?targetMotifMatchRegionMatchBeginPositionMF_00482384) - 1) AS ?thisPositionOn112) .
BIND(?thisPositionOn112 AS ?thisPositionOn113) .
BIND(?this AS ?pfs2t395) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn112))) AS ?pfsb109) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn113))) AS ?pfse110) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn112, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00482a108')) AS ?annotation108) .
BIND(?this AS ?pfs107) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch400 faldo:location ?templateMotifSequenceMatchRegionP0A407401 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A407403 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A407MF_00482396 .
?templateMotifSequenceMatchRegionP0A407401 faldo:begin ?templateMotifSequenceMatchBeginP0A407402 .
?templateMotifSequenceMatchBeginP0A407402 faldo:position ?templateMotifSequenceMatchBeginPositionP0A407397 ;
faldo:reference isoform:P0A407-1 .
?templateMotifSequenceProfileAlignmentOperationP0A407403 edam:has_input signature:MF_00482 ;
rdf:type edam:operation_0300 .
?targetMotifMatch404 faldo:location ?targetMotifMatchRegionMatch405 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00482407 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A407MF_00482398 .
?targetMotifMatchRegionMatch405 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00482406 .
?targetMotifMatchRegionMatchBeginMF_00482406 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00482399 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00482407 edam:has_input signature:MF_00482 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:1218 .
})) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A407MF_00482396, 1, (STRLEN(?templateMotifCigarP0A407MF_00482396) - STRLEN(REPLACE(?templateMotifCigarP0A407MF_00482396, CONCAT('^(?:-*[^-]){', STR(((669 - ?templateMotifSequenceMatchBeginPositionP0A407397) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1408) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A407MF_00482398, 1, (STRLEN(?targetMotifMatchCigarP0A407MF_00482398) - STRLEN(REPLACE(?targetMotifMatchCigarP0A407MF_00482398, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1408), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A407MF_00482398, 1, (STRLEN(?targetMotifMatchCigarP0A407MF_00482398) - STRLEN(REPLACE(?targetMotifMatchCigarP0A407MF_00482398, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1408), '}'), '')))), '[^-]', ''))) AS ?step2409) .
BIND(((?step2409 + ?targetMotifMatchRegionMatchBeginPositionMF_00482399) - 1) AS ?thisPositionOn119) .
BIND(?thisPositionOn119 AS ?thisPositionOn120) .
BIND(?this AS ?pfs2t410) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn119))) AS ?pfsb116) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn120))) AS ?pfse117) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn119, 1) = 'M')) .
BIND(URI(CONCAT(STR(?this), '#MF_00482a115')) AS ?annotation115) .
BIND(?this AS ?pfs114) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch415 faldo:location ?templateMotifSequenceMatchRegionP0A407416 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A407418 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A407MF_00482411 .
?templateMotifSequenceMatchRegionP0A407416 faldo:begin ?templateMotifSequenceMatchBeginP0A407417 .
?templateMotifSequenceMatchBeginP0A407417 faldo:position ?templateMotifSequenceMatchBeginPositionP0A407412 ;
faldo:reference isoform:P0A407-1 .
?templateMotifSequenceProfileAlignmentOperationP0A407418 edam:has_input signature:MF_00482 ;
rdf:type edam:operation_0300 .
?targetMotifMatch419 faldo:location ?targetMotifMatchRegionMatch420 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00482422 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A407MF_00482413 .
?targetMotifMatchRegionMatch420 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00482421 .
?targetMotifMatchRegionMatchBeginMF_00482421 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00482414 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00482422 edam:has_input signature:MF_00482 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:1218 .
})) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A407MF_00482411, 1, (STRLEN(?templateMotifCigarP0A407MF_00482411) - STRLEN(REPLACE(?templateMotifCigarP0A407MF_00482411, CONCAT('^(?:-*[^-]){', STR(((677 - ?templateMotifSequenceMatchBeginPositionP0A407412) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1423) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A407MF_00482413, 1, (STRLEN(?targetMotifMatchCigarP0A407MF_00482413) - STRLEN(REPLACE(?targetMotifMatchCigarP0A407MF_00482413, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1423), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A407MF_00482413, 1, (STRLEN(?targetMotifMatchCigarP0A407MF_00482413) - STRLEN(REPLACE(?targetMotifMatchCigarP0A407MF_00482413, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1423), '}'), '')))), '[^-]', ''))) AS ?step2424) .
BIND(((?step2424 + ?targetMotifMatchRegionMatchBeginPositionMF_00482414) - 1) AS ?thisPositionOn126) .
BIND(?thisPositionOn126 AS ?thisPositionOn127) .
BIND(?this AS ?pfs2t425) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn126))) AS ?pfsb123) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn127))) AS ?pfse124) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn126, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_00482a122')) AS ?annotation122) .
BIND(?this AS ?pfs121) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch430 faldo:location ?templateMotifSequenceMatchRegionP0A407431 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A407433 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A407MF_00482426 .
?templateMotifSequenceMatchRegionP0A407431 faldo:begin ?templateMotifSequenceMatchBeginP0A407432 .
?templateMotifSequenceMatchBeginP0A407432 faldo:position ?templateMotifSequenceMatchBeginPositionP0A407427 ;
faldo:reference isoform:P0A407-1 .
?templateMotifSequenceProfileAlignmentOperationP0A407433 edam:has_input signature:MF_00482 ;
rdf:type edam:operation_0300 .
?targetMotifMatch434 faldo:location ?targetMotifMatchRegionMatch435 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00482437 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A407MF_00482428 .
?targetMotifMatchRegionMatch435 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00482436 .
?targetMotifMatchRegionMatchBeginMF_00482436 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00482429 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00482437 edam:has_input signature:MF_00482 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:1218 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A407MF_00482426, 1, (STRLEN(?templateMotifCigarP0A407MF_00482426) - STRLEN(REPLACE(?templateMotifCigarP0A407MF_00482426, CONCAT('^(?:-*[^-]){', STR(((661 - ?templateMotifSequenceMatchBeginPositionP0A407427) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1438) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A407MF_00482428, 1, (STRLEN(?targetMotifMatchCigarP0A407MF_00482428) - STRLEN(REPLACE(?targetMotifMatchCigarP0A407MF_00482428, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1438), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A407MF_00482428, 1, (STRLEN(?targetMotifMatchCigarP0A407MF_00482428) - STRLEN(REPLACE(?targetMotifMatchCigarP0A407MF_00482428, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1438), '}'), '')))), '[^-]', ''))) AS ?step2439) .
BIND(((?step2439 + ?targetMotifMatchRegionMatchBeginPositionMF_00482429) - 1) AS ?thisPositionOn133) .
BIND(?thisPositionOn133 AS ?thisPositionOn134) .
BIND(?this AS ?pfs3t440) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn133))) AS ?pfsb130) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn134))) AS ?pfse131) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn133, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00482a129')) AS ?annotation129) .
BIND(?this AS ?pfs128) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch445 faldo:location ?templateMotifSequenceMatchRegionP0A407446 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A407448 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A407MF_00482441 .
?templateMotifSequenceMatchRegionP0A407446 faldo:begin ?templateMotifSequenceMatchBeginP0A407447 .
?templateMotifSequenceMatchBeginP0A407447 faldo:position ?templateMotifSequenceMatchBeginPositionP0A407442 ;
faldo:reference isoform:P0A407-1 .
?templateMotifSequenceProfileAlignmentOperationP0A407448 edam:has_input signature:MF_00482 ;
rdf:type edam:operation_0300 .
?targetMotifMatch449 faldo:location ?targetMotifMatchRegionMatch450 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00482452 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A407MF_00482443 .
?targetMotifMatchRegionMatch450 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00482451 .
?targetMotifMatchRegionMatchBeginMF_00482451 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00482444 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00482452 edam:has_input signature:MF_00482 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:1218 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A407MF_00482441, 1, (STRLEN(?templateMotifCigarP0A407MF_00482441) - STRLEN(REPLACE(?templateMotifCigarP0A407MF_00482441, CONCAT('^(?:-*[^-]){', STR(((669 - ?templateMotifSequenceMatchBeginPositionP0A407442) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1453) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A407MF_00482443, 1, (STRLEN(?targetMotifMatchCigarP0A407MF_00482443) - STRLEN(REPLACE(?targetMotifMatchCigarP0A407MF_00482443, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1453), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A407MF_00482443, 1, (STRLEN(?targetMotifMatchCigarP0A407MF_00482443) - STRLEN(REPLACE(?targetMotifMatchCigarP0A407MF_00482443, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1453), '}'), '')))), '[^-]', ''))) AS ?step2454) .
BIND(((?step2454 + ?targetMotifMatchRegionMatchBeginPositionMF_00482444) - 1) AS ?thisPositionOn140) .
BIND(?thisPositionOn140 AS ?thisPositionOn141) .
BIND(?this AS ?pfs3t455) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn140))) AS ?pfsb137) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn141))) AS ?pfse138) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn140, 1) = 'M')) .
BIND(URI(CONCAT(STR(?this), '#MF_00482a136')) AS ?annotation136) .
BIND(?this AS ?pfs135) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch460 faldo:location ?templateMotifSequenceMatchRegionP0A407461 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A407463 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A407MF_00482456 .
?templateMotifSequenceMatchRegionP0A407461 faldo:begin ?templateMotifSequenceMatchBeginP0A407462 .
?templateMotifSequenceMatchBeginP0A407462 faldo:position ?templateMotifSequenceMatchBeginPositionP0A407457 ;
faldo:reference isoform:P0A407-1 .
?templateMotifSequenceProfileAlignmentOperationP0A407463 edam:has_input signature:MF_00482 ;
rdf:type edam:operation_0300 .
?targetMotifMatch464 faldo:location ?targetMotifMatchRegionMatch465 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00482467 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A407MF_00482458 .
?targetMotifMatchRegionMatch465 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00482466 .
?targetMotifMatchRegionMatchBeginMF_00482466 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00482459 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00482467 edam:has_input signature:MF_00482 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:1218 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A407MF_00482456, 1, (STRLEN(?templateMotifCigarP0A407MF_00482456) - STRLEN(REPLACE(?templateMotifCigarP0A407MF_00482456, CONCAT('^(?:-*[^-]){', STR(((677 - ?templateMotifSequenceMatchBeginPositionP0A407457) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1468) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A407MF_00482458, 1, (STRLEN(?targetMotifMatchCigarP0A407MF_00482458) - STRLEN(REPLACE(?targetMotifMatchCigarP0A407MF_00482458, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1468), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A407MF_00482458, 1, (STRLEN(?targetMotifMatchCigarP0A407MF_00482458) - STRLEN(REPLACE(?targetMotifMatchCigarP0A407MF_00482458, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1468), '}'), '')))), '[^-]', ''))) AS ?step2469) .
BIND(((?step2469 + ?targetMotifMatchRegionMatchBeginPositionMF_00482459) - 1) AS ?thisPositionOn147) .
BIND(?thisPositionOn147 AS ?thisPositionOn148) .
BIND(?this AS ?pfs3t470) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn147))) AS ?pfsb144) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn148))) AS ?pfse145) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn147, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_00482a143')) AS ?annotation143) .
BIND(?this AS ?pfs142) .
}
OPTIONAL {
?this a up:Protein .
{
?this up:encodedIn up:Plastid .
} UNION {
?this up:encodedIn up:Chloroplast .
}
BIND(?this AS ?case4) .
BIND(URI(CONCAT(STR(?this), '#MF_00482a5')) AS ?name5) .
BIND(URI(CONCAT(STR(?this), '#MF_00482a6')) AS ?name6) .
BIND(URI(CONCAT(STR(?this), '#MF_00482a7')) AS ?name7) .
}
OPTIONAL {
?this a up:Protein .
FILTER (! (EXISTS {
{
?this up:encodedIn up:Plastid .
} UNION {
?this up:encodedIn up:Chloroplast .
}
})) .
BIND(?this AS ?case8) .
BIND(URI(CONCAT(STR(?this), '#MF_00482a9')) AS ?name9) .
BIND(URI(CONCAT(STR(?this), '#MF_00482a10')) AS ?name10) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:33071 .
BIND(?this AS ?case11) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:1218 .
BIND(?this AS ?case12) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:33071 .
})) .
BIND(?this AS ?case13) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:35493 .
{
?this up:encodedIn up:Plastid .
} UNION {
?this up:encodedIn up:Chloroplast .
}
BIND(?this AS ?case14) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:33071 .
FILTER (! (EXISTS {
{
?this up:encodedIn up:Plastid .
} UNION {
?this up:encodedIn up:Chloroplast .
}
})) .
BIND(?this AS ?case15) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
{
?this up:encodedIn up:Plastid .
} UNION {
?this up:encodedIn up:Chloroplast .
}
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:1117 .
})) .
BIND(?this AS ?case16) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
{
?this up:encodedIn up:Plastid .
} UNION {
?this up:encodedIn up:Chloroplast .
}
})) .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:33071 .
})) .
BIND(?this AS ?case17) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:1117 .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:1218 .
})) .
BIND(?this AS ?case18) .
}
OPTIONAL {
?this a up:Protein .
{
?this up:organism ?thisOrganism .
{
?this up:encodedIn up:Plastid .
} UNION {
?this up:encodedIn up:Chloroplast .
}
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:35493 .
})) .
} UNION {
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:1117 .
}
BIND(?this AS ?case19) .
}
}
"xsd:string |
