| http://purl.uniprot.org/unirules/MF_01630#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:591602 up:source unirule:MF_01630 .
_:591603 up:source unirule:MF_01630 .
_:591604 up:source unirule:MF_01630 .
_:591605 up:source unirule:MF_01630 .
_:591606 up:source unirule:MF_01630 .
_:591607 up:source unirule:MF_01630 .
_:591608 up:source unirule:MF_01630 .
_:591609 up:source unirule:MF_01630 .
_:591610 up:source unirule:MF_01630 .
_:591611 up:source unirule:MF_01630 .
_:591612 up:source unirule:MF_01630 .
_:591613 up:source unirule:MF_01630 .
_:591614 up:source unirule:MF_01630 .
_:591615 up:source unirule:MF_01630 .
_:591616 up:source unirule:MF_01630 .
_:591617 up:source unirule:MF_01630 .
_:591618 up:source unirule:MF_01630 .
_:591619 up:source unirule:MF_01630 .
_:591620 up:source unirule:MF_01630 .
_:591621 up:source unirule:MF_01630 .
_:591622 up:source unirule:MF_01630 .
_:591623 up:source unirule:MF_01630 .
_:591624 up:source unirule:MF_01630 .
_:591625 up:source unirule:MF_01630 .
_:591626 up:source unirule:MF_01630 .
_:591627 up:source unirule:MF_01630 .
_:591628 up:source unirule:MF_01630 .
_:591629 up:source unirule:MF_01630 .
_:591630 up:source unirule:MF_01630 .
_:591631 up:source unirule:MF_01630 .
_:591632 up:source unirule:MF_01630 .
_:591633 up:source unirule:MF_01630 .
_:591634 up:source unirule:MF_01630 .
_:591635 up:source unirule:MF_01630 .
_:591636 up:source unirule:MF_01630 .
_:591637 up:source unirule:MF_01630 .
_:591638 up:source unirule:MF_01630 .
_:591639 up:source unirule:MF_01630 .
_:591640 up:source unirule:MF_01630 .
_:591641 up:source unirule:MF_01630 .
_:591642 up:source unirule:MF_01630 .
_:591643 up:source unirule:MF_01630 .
_:591644 up:source unirule:MF_01630 .
_:591645 up:source unirule:MF_01630 .
_:591646 up:source unirule:MF_01630 .
_:591647 up:source unirule:MF_01630 .
_:591648 up:source unirule:MF_01630 .
_:591649 up:source unirule:MF_01630 .
?this up:annotation ?annotation1 ,
?annotation3 ,
?annotation4 ,
?annotation5 ;
up:classifiedWith GO:0005506 ,
GO:0006777 ,
GO:0008940 ,
GO:0009055 ,
GO:0042128 ,
keyword:249 ,
keyword:408 ,
keyword:411 ,
keyword:479 ,
keyword:4 ,
keyword:500 ,
keyword:534 ,
keyword:560 ,
keyword:732 ,
keyword:813 .
?gene0 skos:prefLabel 'napA' .
?annotation1 up:activity ?activity2 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity2 up:catalyticActivity ;
up:enzymeClass .
?annotation3 up:cofactor chebi:49883 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 1 [4Fe-4S] cluster.' .
?annotation4 up:cofactor chebi:60539 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 1 molybdenum-bis(molybdopterin guanine dinucleotide) (Mo-bis-MGD) cofactor per subunit.' .
?annotation5 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.' .
?case7 up:classifiedWith GO:0042597 ,
keyword:574 ;
up:precursor "true"^^xsd:boolean ;
up:recommendedName ?name8 .
?name8 up:ecName '1.9.6.1' ;
up:fullName 'Periplasmic nitrate reductase' ;
rdf:type up:Structured_Name .
?case9 up:precursor "true"^^xsd:boolean ;
up:recommendedName ?name10 .
?name10 up:ecName '1.9.6.1' ;
up:fullName 'Nitrate reductase' ;
rdf:type up:Structured_Name .
?pfs11 up:annotation ?annotation12 .
?annotation12 faldo:begin ?pfsb13 ;
faldo:end ?pfse14 ;
up:ligand ?ligand15 ;
rdf:type up:Binding_Site_Annotation .
?pfsb13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfse14 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?ligand15 rdfs:subClassOf chebi:60539 .
?pfs18 up:annotation ?annotation19 .
?annotation19 faldo:begin ?pfsb20 ;
faldo:end ?pfse21 ;
up:ligand ?ligand22 ;
rdf:type up:Binding_Site_Annotation .
?pfsb20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfse21 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?ligand22 rdfs:subClassOf chebi:60539 .
?pfs25 up:annotation ?annotation26 .
?annotation26 faldo:begin ?pfsb27 ;
faldo:end ?pfse28 ;
up:ligand ?ligand29 ;
rdf:type up:Binding_Site_Annotation .
?pfsb27 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?pfse28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?ligand29 rdfs:subClassOf chebi:60539 .
?pfs32 up:annotation ?annotation33 .
?annotation33 faldo:begin ?pfsb34 ;
faldo:end ?pfse35 ;
up:ligand ?ligand36 ;
rdf:type up:Binding_Site_Annotation .
?pfsb34 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?pfse35 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?ligand36 rdfs:subClassOf chebi:60539 .
?pfs39 up:annotation ?annotation40 .
?annotation40 faldo:begin ?pfsb41 ;
faldo:end ?pfse42 ;
up:ligand ?ligand43 ;
rdf:type up:Binding_Site_Annotation .
?pfsb41 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?pfse42 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?ligand43 rdfs:subClassOf chebi:60539 .
?pfs46 up:annotation ?annotation47 .
?annotation47 faldo:begin ?pfsb48 ;
faldo:end ?pfse49 ;
up:ligand ?ligand50 ;
rdf:type up:Binding_Site_Annotation .
?pfsb48 faldo:position ?thisPositionOn51 ;
rdf:type faldo:ExactPosition .
?pfse49 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?ligand50 rdfs:subClassOf chebi:49883 .
?pfs53 up:annotation ?annotation54 .
?annotation54 faldo:begin ?pfsb55 ;
faldo:end ?pfse56 ;
up:ligand ?ligand57 ;
rdf:type up:Binding_Site_Annotation .
?pfsb55 faldo:position ?thisPositionOn58 ;
rdf:type faldo:ExactPosition .
?pfse56 faldo:position ?thisPositionOn59 ;
rdf:type faldo:ExactPosition .
?ligand57 rdfs:subClassOf chebi:49883 .
?pfs60 up:annotation ?annotation61 .
?annotation61 faldo:begin ?pfsb62 ;
faldo:end ?pfse63 ;
up:ligand ?ligand64 ;
rdf:type up:Binding_Site_Annotation .
?pfsb62 faldo:position ?thisPositionOn65 ;
rdf:type faldo:ExactPosition .
?pfse63 faldo:position ?thisPositionOn66 ;
rdf:type faldo:ExactPosition .
?ligand64 rdfs:subClassOf chebi:49883 .
?pfs67 up:annotation ?annotation68 .
?annotation68 faldo:begin ?pfsb69 ;
faldo:end ?pfse70 ;
up:ligand ?ligand71 ;
rdf:type up:Binding_Site_Annotation .
?pfsb69 faldo:position ?thisPositionOn72 ;
rdf:type faldo:ExactPosition .
?pfse70 faldo:position ?thisPositionOn73 ;
rdf:type faldo:ExactPosition .
?ligand71 rdfs:subClassOf chebi:49883 .
?pfs74 up:annotation ?annotation75 .
?annotation75 faldo:begin ?pfsb76 ;
faldo:end ?pfse77 ;
up:ligand ?ligand78 ;
rdf:type up:Binding_Site_Annotation .
?pfsb76 faldo:position ?thisPositionOn79 ;
rdf:type faldo:ExactPosition .
?pfse77 faldo:position ?thisPositionOn80 ;
rdf:type faldo:ExactPosition .
?ligand78 rdfs:subClassOf chebi:60539 .
?pfs81 up:annotation ?annotation82 .
?annotation82 faldo:begin ?pfsb83 ;
faldo:end ?pfse84 ;
up:ligand ?ligand85 ;
rdf:type up:Binding_Site_Annotation .
?pfsb83 faldo:position ?thisPositionOn86 ;
rdf:type faldo:ExactPosition .
?pfse84 faldo:position ?thisPositionOn87 ;
rdf:type faldo:ExactPosition .
?ligand85 rdfs:subClassOf chebi:60539 .
?pfs88 up:annotation ?annotation89 .
?annotation89 faldo:begin ?pfsb90 ;
faldo:end ?pfse91 ;
up:ligand ?ligand92 ;
rdf:type up:Binding_Site_Annotation .
?pfsb90 faldo:position ?thisPositionOn93 ;
rdf:type faldo:ExactPosition .
?pfse91 faldo:position ?thisPositionOn94 ;
rdf:type faldo:ExactPosition .
?ligand92 rdfs:subClassOf chebi:60539 .
?pfs95 up:annotation ?annotation96 .
?annotation96 faldo:begin ?pfsb97 ;
faldo:end ?pfse98 ;
up:ligand ?ligand99 ;
rdf:type up:Binding_Site_Annotation .
?pfsb97 faldo:position ?thisPositionOn100 ;
rdf:type faldo:ExactPosition .
?pfse98 faldo:position ?thisPositionOn101 ;
rdf:type faldo:ExactPosition .
?ligand99 rdfs:subClassOf chebi:60539 .
?pfs102 up:annotation ?annotation103 .
?annotation103 faldo:begin ?pfsb104 ;
faldo:end ?pfse105 ;
up:ligand ?ligand106 ;
rdf:type up:Binding_Site_Annotation .
?pfsb104 faldo:position ?thisPositionOn107 ;
rdf:type faldo:ExactPosition .
?pfse105 faldo:position ?thisPositionOn108 ;
rdf:type faldo:ExactPosition .
?ligand106 rdfs:subClassOf chebi:60539 .
?pfs109 up:annotation ?annotation110 .
?annotation110 faldo:begin ?pfsb111 ;
faldo:end ?pfse112 ;
up:ligand ?ligand113 ;
rdf:type up:Binding_Site_Annotation .
?pfsb111 faldo:position ?thisPositionOn114 ;
rdf:type faldo:ExactPosition .
?pfse112 faldo:position ?thisPositionOn115 ;
rdf:type faldo:ExactPosition .
?ligand113 rdfs:subClassOf chebi:60539 .
?pfs116 up:annotation ?annotation117 .
?annotation117 faldo:begin ?pfsb118 ;
faldo:end ?pfse119 ;
up:ligand ?ligand120 ;
rdf:type up:Binding_Site_Annotation .
?pfsb118 faldo:position ?thisPositionOn121 ;
rdf:type faldo:ExactPosition .
?pfse119 faldo:position ?thisPositionOn122 ;
rdf:type faldo:ExactPosition .
?ligand120 rdfs:subClassOf chebi:60539 .
?pfs123 up:annotation ?annotation124 .
?annotation124 faldo:begin ?pfsb125 ;
faldo:end ?pfse126 ;
up:ligand ?ligand127 ;
rdf:type up:Binding_Site_Annotation .
?pfsb125 faldo:position ?thisPositionOn128 ;
rdf:type faldo:ExactPosition .
?pfse126 faldo:position ?thisPositionOn129 ;
rdf:type faldo:ExactPosition .
?ligand127 rdfs:subClassOf chebi:60539 .
?pfs130 up:annotation ?annotation131 .
?annotation131 faldo:begin ?pfsb132 ;
faldo:end ?pfse133 ;
up:ligand ?ligand134 ;
rdf:type up:Binding_Site_Annotation .
?pfsb132 faldo:position ?thisPositionOn135 ;
rdf:type faldo:ExactPosition .
?pfse133 faldo:position ?thisPositionOn136 ;
rdf:type faldo:ExactPosition .
?ligand134 rdfs:subClassOf chebi:60539 .
?pfs137 up:annotation ?annotation138 .
?annotation138 faldo:begin ?pfsb139 ;
faldo:end ?pfse140 ;
up:ligand ?ligand141 ;
rdf:type up:Binding_Site_Annotation .
?pfsb139 faldo:position ?thisPositionOn143 ;
rdf:type faldo:ExactPosition .
?pfse140 faldo:position ?thisPositionOn144 ;
rdf:type faldo:ExactPosition .
?ligand141 rdfs:subClassOf ?molecule142 .
?molecule142 rdfs:label 'substrate' .
?pfs145 up:annotation ?annotation146 .
?annotation146 faldo:begin ?pfsb147 ;
faldo:end ?pfse148 ;
up:ligand ?ligand149 ;
rdf:type up:Binding_Site_Annotation .
?pfsb147 faldo:position ?thisPositionOn150 ;
rdf:type faldo:ExactPosition .
?pfse148 faldo:position ?thisPositionOn151 ;
rdf:type faldo:ExactPosition .
?ligand149 rdfs:subClassOf chebi:60539 .
?pfs152 up:annotation ?annotation153 .
?annotation153 faldo:begin ?pfsb154 ;
faldo:end ?pfse155 ;
up:ligand ?ligand156 ;
rdf:type up:Binding_Site_Annotation .
?pfsb154 faldo:position ?thisPositionOn157 ;
rdf:type faldo:ExactPosition .
?pfse155 faldo:position ?thisPositionOn158 ;
rdf:type faldo:ExactPosition .
?ligand156 rdfs:subClassOf chebi:60539 .
?sam159 up:classifiedWith keyword:732 .
?signal160 faldo:begin ?signalb161 ;
faldo:end ?signale162 .
?signalb161 faldo:position ?signalbp163 .
?signale162 faldo:position ?signalep164 .
?keyword165 up:range ?signal160 .
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up:attribution _:591602 ;
rdf:subject ?gene0 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene0 .
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up:attribution _:591603 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation1 .
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up:attribution _:591604 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
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up:attribution _:591605 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
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up:attribution _:591606 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
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up:attribution _:591607 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:4 .
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up:attribution _:591608 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:249 .
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up:attribution _:591609 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:408 .
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up:attribution _:591610 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:411 .
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up:attribution _:591611 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
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up:attribution _:591612 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:500 .
_:591661 a rdf:Statement ;
up:attribution _:591613 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:534 .
_:591662 a rdf:Statement ;
up:attribution _:591614 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:560 .
_:591663 a rdf:Statement ;
up:attribution _:591615 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:732 .
_:591664 a rdf:Statement ;
up:attribution _:591616 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:813 .
_:591665 a rdf:Statement ;
up:attribution _:591617 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009055 .
_:591666 a rdf:Statement ;
up:attribution _:591618 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005506 .
_:591667 a rdf:Statement ;
up:attribution _:591619 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008940 .
_:591668 a rdf:Statement ;
up:attribution _:591620 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006777 .
_:591669 a rdf:Statement ;
up:attribution _:591621 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0042128 .
_:591670 a rdf:Statement ;
up:attribution _:591622 ;
rdf:subject ?case7 ;
rdf:predicate up:recommendedName ;
rdf:object ?name8 .
_:591671 a rdf:Statement ;
up:attribution _:591623 ;
rdf:subject ?case7 ;
rdf:predicate up:precursor ;
rdf:object "true"^^xsd:boolean .
_:591672 a rdf:Statement ;
up:attribution _:591624 ;
rdf:subject ?case7 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:574 .
_:591673 a rdf:Statement ;
up:attribution _:591625 ;
rdf:subject ?case7 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0042597 .
_:591674 a rdf:Statement ;
up:attribution _:591626 ;
rdf:subject ?case9 ;
rdf:predicate up:recommendedName ;
rdf:object ?name10 .
_:591675 a rdf:Statement ;
up:attribution _:591627 ;
rdf:subject ?case9 ;
rdf:predicate up:precursor ;
rdf:object "true"^^xsd:boolean .
_:591676 a rdf:Statement ;
up:source unirule:MF_01630 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:591677 a rdf:Statement ;
up:attribution _:591628 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:591678 a rdf:Statement ;
up:source unirule:MF_01630 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:591679 a rdf:Statement ;
up:attribution _:591629 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:591680 a rdf:Statement ;
up:source unirule:MF_01630 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:591681 a rdf:Statement ;
up:attribution _:591630 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:591682 a rdf:Statement ;
up:source unirule:MF_01630 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:591683 a rdf:Statement ;
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rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
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up:source unirule:MF_01630 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:591685 a rdf:Statement ;
up:attribution _:591632 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
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up:source unirule:MF_01630 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
_:591687 a rdf:Statement ;
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rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
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up:source unirule:MF_01630 ;
rdf:subject ?pfs53 ;
rdf:predicate up:annotation ;
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rdf:subject ?pfs53 ;
rdf:predicate up:annotation ;
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up:source unirule:MF_01630 ;
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rdf:predicate up:annotation ;
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rdf:subject ?pfs67 ;
rdf:predicate up:annotation ;
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_:591694 a rdf:Statement ;
up:source unirule:MF_01630 ;
rdf:subject ?pfs74 ;
rdf:predicate up:annotation ;
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_:591695 a rdf:Statement ;
up:attribution _:591637 ;
rdf:subject ?pfs74 ;
rdf:predicate up:annotation ;
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_:591696 a rdf:Statement ;
up:source unirule:MF_01630 ;
rdf:subject ?pfs81 ;
rdf:predicate up:annotation ;
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_:591697 a rdf:Statement ;
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rdf:subject ?pfs81 ;
rdf:predicate up:annotation ;
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_:591698 a rdf:Statement ;
up:source unirule:MF_01630 ;
rdf:subject ?pfs88 ;
rdf:predicate up:annotation ;
rdf:object ?annotation89 .
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rdf:subject ?pfs88 ;
rdf:predicate up:annotation ;
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up:source unirule:MF_01630 ;
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rdf:subject ?pfs95 ;
rdf:predicate up:annotation ;
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up:source unirule:MF_01630 ;
rdf:subject ?pfs102 ;
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rdf:object ?annotation103 .
_:591703 a rdf:Statement ;
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rdf:subject ?pfs102 ;
rdf:predicate up:annotation ;
rdf:object ?annotation103 .
_:591704 a rdf:Statement ;
up:source unirule:MF_01630 ;
rdf:subject ?pfs109 ;
rdf:predicate up:annotation ;
rdf:object ?annotation110 .
_:591705 a rdf:Statement ;
up:attribution _:591642 ;
rdf:subject ?pfs109 ;
rdf:predicate up:annotation ;
rdf:object ?annotation110 .
_:591706 a rdf:Statement ;
up:source unirule:MF_01630 ;
rdf:subject ?pfs116 ;
rdf:predicate up:annotation ;
rdf:object ?annotation117 .
_:591707 a rdf:Statement ;
up:attribution _:591643 ;
rdf:subject ?pfs116 ;
rdf:predicate up:annotation ;
rdf:object ?annotation117 .
_:591708 a rdf:Statement ;
up:source unirule:MF_01630 ;
rdf:subject ?pfs123 ;
rdf:predicate up:annotation ;
rdf:object ?annotation124 .
_:591709 a rdf:Statement ;
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rdf:subject ?pfs123 ;
rdf:predicate up:annotation ;
rdf:object ?annotation124 .
_:591710 a rdf:Statement ;
up:source unirule:MF_01630 ;
rdf:subject ?pfs130 ;
rdf:predicate up:annotation ;
rdf:object ?annotation131 .
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rdf:subject ?pfs130 ;
rdf:predicate up:annotation ;
rdf:object ?annotation131 .
_:591712 a rdf:Statement ;
up:source unirule:MF_01630 ;
rdf:subject ?pfs137 ;
rdf:predicate up:annotation ;
rdf:object ?annotation138 .
_:591713 a rdf:Statement ;
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rdf:subject ?pfs137 ;
rdf:predicate up:annotation ;
rdf:object ?annotation138 .
_:591714 a rdf:Statement ;
up:source unirule:MF_01630 ;
rdf:subject ?pfs145 ;
rdf:predicate up:annotation ;
rdf:object ?annotation146 .
_:591715 a rdf:Statement ;
up:attribution _:591647 ;
rdf:subject ?pfs145 ;
rdf:predicate up:annotation ;
rdf:object ?annotation146 .
_:591716 a rdf:Statement ;
up:source unirule:MF_01630 ;
rdf:subject ?pfs152 ;
rdf:predicate up:annotation ;
rdf:object ?annotation153 .
_:591717 a rdf:Statement ;
up:attribution _:591648 ;
rdf:subject ?pfs152 ;
rdf:predicate up:annotation ;
rdf:object ?annotation153 .
_:591718 a rdf:Statement ;
up:attribution _:591649 ;
rdf:subject ?sam159 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:732 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01630
#Rule MF_01630 Created by:? on:2006-01-18 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01630 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_01630a1')) AS ?annotation1) .
BIND(URI(CONCAT(STR(?this), '#MF_01630a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01630a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01630a5')) AS ?annotation5) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch170 faldo:location ?templateMotifSequenceMatchRegionP33937171 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP33937173 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP33937MF_01630166 .
?templateMotifSequenceMatchRegionP33937171 faldo:begin ?templateMotifSequenceMatchBeginP33937172 .
?templateMotifSequenceMatchBeginP33937172 faldo:position ?templateMotifSequenceMatchBeginPositionP33937167 ;
faldo:reference isoform:P33937-1 .
?templateMotifSequenceProfileAlignmentOperationP33937173 edam:has_input signature:MF_01630 ;
rdf:type edam:operation_0300 .
?targetMotifMatch174 faldo:location ?targetMotifMatchRegionMatch175 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01630177 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP33937MF_01630168 .
?targetMotifMatchRegionMatch175 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01630176 .
?targetMotifMatchRegionMatchBeginMF_01630176 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01630169 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01630177 edam:has_input signature:MF_01630 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33937MF_01630166, 1, (STRLEN(?templateMotifCigarP33937MF_01630166) - STRLEN(REPLACE(?templateMotifCigarP33937MF_01630166, CONCAT('^(?:-*[^-]){', STR(((212 - ?templateMotifSequenceMatchBeginPositionP33937167) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1178) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33937MF_01630168, 1, (STRLEN(?targetMotifMatchCigarP33937MF_01630168) - STRLEN(REPLACE(?targetMotifMatchCigarP33937MF_01630168, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1178), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33937MF_01630168, 1, (STRLEN(?targetMotifMatchCigarP33937MF_01630168) - STRLEN(REPLACE(?targetMotifMatchCigarP33937MF_01630168, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1178), '}'), '')))), '[^-]', ''))) AS ?step2179) .
BIND(((?step2179 + ?targetMotifMatchRegionMatchBeginPositionMF_01630169) - 1) AS ?thisPositionOn16) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33937MF_01630166, 1, (STRLEN(?templateMotifCigarP33937MF_01630166) - STRLEN(REPLACE(?templateMotifCigarP33937MF_01630166, CONCAT('^(?:-*[^-]){', STR(((219 - ?templateMotifSequenceMatchBeginPositionP33937167) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1180) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33937MF_01630168, 1, (STRLEN(?targetMotifMatchCigarP33937MF_01630168) - STRLEN(REPLACE(?targetMotifMatchCigarP33937MF_01630168, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1180), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33937MF_01630168, 1, (STRLEN(?targetMotifMatchCigarP33937MF_01630168) - STRLEN(REPLACE(?targetMotifMatchCigarP33937MF_01630168, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1180), '}'), '')))), '[^-]', ''))) AS ?step2181) .
BIND(((?step2181 + ?targetMotifMatchRegionMatchBeginPositionMF_01630169) - 1) AS ?thisPositionOn17) .
BIND(?this AS ?pfs1t182) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb13) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse14) .
FILTER (REGEX('WG[AS]NMAEM', SUBSTR(?thisSequenceValue, ?thisPositionOn16, (?thisPositionOn17 - ?thisPositionOn16)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01630a12')) AS ?annotation12) .
BIND(?this AS ?pfs11) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch187 faldo:location ?templateMotifSequenceMatchRegionP33937188 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP33937190 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP33937MF_01630183 .
?templateMotifSequenceMatchRegionP33937188 faldo:begin ?templateMotifSequenceMatchBeginP33937189 .
?templateMotifSequenceMatchBeginP33937189 faldo:position ?templateMotifSequenceMatchBeginPositionP33937184 ;
faldo:reference isoform:P33937-1 .
?templateMotifSequenceProfileAlignmentOperationP33937190 edam:has_input signature:MF_01630 ;
rdf:type edam:operation_0300 .
?targetMotifMatch191 faldo:location ?targetMotifMatchRegionMatch192 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01630194 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP33937MF_01630185 .
?targetMotifMatchRegionMatch192 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01630193 .
?targetMotifMatchRegionMatchBeginMF_01630193 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01630186 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01630194 edam:has_input signature:MF_01630 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33937MF_01630183, 1, (STRLEN(?templateMotifCigarP33937MF_01630183) - STRLEN(REPLACE(?templateMotifCigarP33937MF_01630183, CONCAT('^(?:-*[^-]){', STR(((243 - ?templateMotifSequenceMatchBeginPositionP33937184) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1195) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33937MF_01630185, 1, (STRLEN(?targetMotifMatchCigarP33937MF_01630185) - STRLEN(REPLACE(?targetMotifMatchCigarP33937MF_01630185, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1195), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33937MF_01630185, 1, (STRLEN(?targetMotifMatchCigarP33937MF_01630185) - STRLEN(REPLACE(?targetMotifMatchCigarP33937MF_01630185, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1195), '}'), '')))), '[^-]', ''))) AS ?step2196) .
BIND(((?step2196 + ?targetMotifMatchRegionMatchBeginPositionMF_01630186) - 1) AS ?thisPositionOn23) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33937MF_01630183, 1, (STRLEN(?templateMotifCigarP33937MF_01630183) - STRLEN(REPLACE(?templateMotifCigarP33937MF_01630183, CONCAT('^(?:-*[^-]){', STR(((247 - ?templateMotifSequenceMatchBeginPositionP33937184) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1197) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33937MF_01630185, 1, (STRLEN(?targetMotifMatchCigarP33937MF_01630185) - STRLEN(REPLACE(?targetMotifMatchCigarP33937MF_01630185, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1197), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33937MF_01630185, 1, (STRLEN(?targetMotifMatchCigarP33937MF_01630185) - STRLEN(REPLACE(?targetMotifMatchCigarP33937MF_01630185, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1197), '}'), '')))), '[^-]', ''))) AS ?step2198) .
BIND(((?step2198 + ?targetMotifMatchRegionMatchBeginPositionMF_01630186) - 1) AS ?thisPositionOn24) .
BIND(?this AS ?pfs1t199) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb20) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse21) .
FILTER (REGEX('ST[YF][ARNDCQEGHILKMFPSTWYVBZJUOX]H', SUBSTR(?thisSequenceValue, ?thisPositionOn23, (?thisPositionOn24 - ?thisPositionOn23)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01630a19')) AS ?annotation19) .
BIND(?this AS ?pfs18) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch204 faldo:location ?templateMotifSequenceMatchRegionP33937205 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP33937207 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP33937MF_01630200 .
?templateMotifSequenceMatchRegionP33937205 faldo:begin ?templateMotifSequenceMatchBeginP33937206 .
?templateMotifSequenceMatchBeginP33937206 faldo:position ?templateMotifSequenceMatchBeginPositionP33937201 ;
faldo:reference isoform:P33937-1 .
?templateMotifSequenceProfileAlignmentOperationP33937207 edam:has_input signature:MF_01630 ;
rdf:type edam:operation_0300 .
?targetMotifMatch208 faldo:location ?targetMotifMatchRegionMatch209 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01630211 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP33937MF_01630202 .
?targetMotifMatchRegionMatch209 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01630210 .
?targetMotifMatchRegionMatchBeginMF_01630210 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01630203 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01630211 edam:has_input signature:MF_01630 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33937MF_01630200, 1, (STRLEN(?templateMotifCigarP33937MF_01630200) - STRLEN(REPLACE(?templateMotifCigarP33937MF_01630200, CONCAT('^(?:-*[^-]){', STR(((262 - ?templateMotifSequenceMatchBeginPositionP33937201) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1212) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33937MF_01630202, 1, (STRLEN(?targetMotifMatchCigarP33937MF_01630202) - STRLEN(REPLACE(?targetMotifMatchCigarP33937MF_01630202, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1212), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33937MF_01630202, 1, (STRLEN(?targetMotifMatchCigarP33937MF_01630202) - STRLEN(REPLACE(?targetMotifMatchCigarP33937MF_01630202, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1212), '}'), '')))), '[^-]', ''))) AS ?step2213) .
BIND(((?step2213 + ?targetMotifMatchRegionMatchBeginPositionMF_01630203) - 1) AS ?thisPositionOn30) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33937MF_01630200, 1, (STRLEN(?templateMotifCigarP33937MF_01630200) - STRLEN(REPLACE(?templateMotifCigarP33937MF_01630200, CONCAT('^(?:-*[^-]){', STR(((264 - ?templateMotifSequenceMatchBeginPositionP33937201) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1214) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33937MF_01630202, 1, (STRLEN(?targetMotifMatchCigarP33937MF_01630202) - STRLEN(REPLACE(?targetMotifMatchCigarP33937MF_01630202, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1214), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33937MF_01630202, 1, (STRLEN(?targetMotifMatchCigarP33937MF_01630202) - STRLEN(REPLACE(?targetMotifMatchCigarP33937MF_01630202, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1214), '}'), '')))), '[^-]', ''))) AS ?step2215) .
BIND(((?step2215 + ?targetMotifMatchRegionMatchBeginPositionMF_01630203) - 1) AS ?thisPositionOn31) .
BIND(?this AS ?pfs1t216) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb27) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse28) .
FILTER (REGEX('[QG][ST]D', SUBSTR(?thisSequenceValue, ?thisPositionOn30, (?thisPositionOn31 - ?thisPositionOn30)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01630a26')) AS ?annotation26) .
BIND(?this AS ?pfs25) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch221 faldo:location ?templateMotifSequenceMatchRegionP33937222 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP33937224 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP33937MF_01630217 .
?templateMotifSequenceMatchRegionP33937222 faldo:begin ?templateMotifSequenceMatchBeginP33937223 .
?templateMotifSequenceMatchBeginP33937223 faldo:position ?templateMotifSequenceMatchBeginPositionP33937218 ;
faldo:reference isoform:P33937-1 .
?templateMotifSequenceProfileAlignmentOperationP33937224 edam:has_input signature:MF_01630 ;
rdf:type edam:operation_0300 .
?targetMotifMatch225 faldo:location ?targetMotifMatchRegionMatch226 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01630228 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP33937MF_01630219 .
?targetMotifMatchRegionMatch226 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01630227 .
?targetMotifMatchRegionMatchBeginMF_01630227 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01630220 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01630228 edam:has_input signature:MF_01630 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33937MF_01630217, 1, (STRLEN(?templateMotifCigarP33937MF_01630217) - STRLEN(REPLACE(?templateMotifCigarP33937MF_01630217, CONCAT('^(?:-*[^-]){', STR(((508 - ?templateMotifSequenceMatchBeginPositionP33937218) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1229) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33937MF_01630219, 1, (STRLEN(?targetMotifMatchCigarP33937MF_01630219) - STRLEN(REPLACE(?targetMotifMatchCigarP33937MF_01630219, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1229), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33937MF_01630219, 1, (STRLEN(?targetMotifMatchCigarP33937MF_01630219) - STRLEN(REPLACE(?targetMotifMatchCigarP33937MF_01630219, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1229), '}'), '')))), '[^-]', ''))) AS ?step2230) .
BIND(((?step2230 + ?targetMotifMatchRegionMatchBeginPositionMF_01630220) - 1) AS ?thisPositionOn37) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33937MF_01630217, 1, (STRLEN(?templateMotifCigarP33937MF_01630217) - STRLEN(REPLACE(?templateMotifCigarP33937MF_01630217, CONCAT('^(?:-*[^-]){', STR(((509 - ?templateMotifSequenceMatchBeginPositionP33937218) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1231) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33937MF_01630219, 1, (STRLEN(?targetMotifMatchCigarP33937MF_01630219) - STRLEN(REPLACE(?targetMotifMatchCigarP33937MF_01630219, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1231), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33937MF_01630219, 1, (STRLEN(?targetMotifMatchCigarP33937MF_01630219) - STRLEN(REPLACE(?targetMotifMatchCigarP33937MF_01630219, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1231), '}'), '')))), '[^-]', ''))) AS ?step2232) .
BIND(((?step2232 + ?targetMotifMatchRegionMatchBeginPositionMF_01630220) - 1) AS ?thisPositionOn38) .
BIND(?this AS ?pfs1t233) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfsb34) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfse35) .
FILTER (REGEX('S[DE]', SUBSTR(?thisSequenceValue, ?thisPositionOn37, (?thisPositionOn38 - ?thisPositionOn37)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01630a33')) AS ?annotation33) .
BIND(?this AS ?pfs32) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch238 faldo:location ?templateMotifSequenceMatchRegionP33937239 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP33937241 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP33937MF_01630234 .
?templateMotifSequenceMatchRegionP33937239 faldo:begin ?templateMotifSequenceMatchBeginP33937240 .
?templateMotifSequenceMatchBeginP33937240 faldo:position ?templateMotifSequenceMatchBeginPositionP33937235 ;
faldo:reference isoform:P33937-1 .
?templateMotifSequenceProfileAlignmentOperationP33937241 edam:has_input signature:MF_01630 ;
rdf:type edam:operation_0300 .
?targetMotifMatch242 faldo:location ?targetMotifMatchRegionMatch243 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01630245 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP33937MF_01630236 .
?targetMotifMatchRegionMatch243 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01630244 .
?targetMotifMatchRegionMatchBeginMF_01630244 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01630237 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01630245 edam:has_input signature:MF_01630 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33937MF_01630234, 1, (STRLEN(?templateMotifCigarP33937MF_01630234) - STRLEN(REPLACE(?templateMotifCigarP33937MF_01630234, CONCAT('^(?:-*[^-]){', STR(((718 - ?templateMotifSequenceMatchBeginPositionP33937235) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1246) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33937MF_01630236, 1, (STRLEN(?targetMotifMatchCigarP33937MF_01630236) - STRLEN(REPLACE(?targetMotifMatchCigarP33937MF_01630236, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1246), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33937MF_01630236, 1, (STRLEN(?targetMotifMatchCigarP33937MF_01630236) - STRLEN(REPLACE(?targetMotifMatchCigarP33937MF_01630236, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1246), '}'), '')))), '[^-]', ''))) AS ?step2247) .
BIND(((?step2247 + ?targetMotifMatchRegionMatchBeginPositionMF_01630237) - 1) AS ?thisPositionOn44) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33937MF_01630234, 1, (STRLEN(?templateMotifCigarP33937MF_01630234) - STRLEN(REPLACE(?templateMotifCigarP33937MF_01630234, CONCAT('^(?:-*[^-]){', STR(((727 - ?templateMotifSequenceMatchBeginPositionP33937235) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1248) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33937MF_01630236, 1, (STRLEN(?targetMotifMatchCigarP33937MF_01630236) - STRLEN(REPLACE(?targetMotifMatchCigarP33937MF_01630236, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1248), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33937MF_01630236, 1, (STRLEN(?targetMotifMatchCigarP33937MF_01630236) - STRLEN(REPLACE(?targetMotifMatchCigarP33937MF_01630236, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1248), '}'), '')))), '[^-]', ''))) AS ?step2249) .
BIND(((?step2249 + ?targetMotifMatchRegionMatchBeginPositionMF_01630237) - 1) AS ?thisPositionOn45) .
BIND(?this AS ?pfs1t250) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfsb41) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfse42) .
FILTER (REGEX('[ST][GM]R[VI][ILV][ED]HWH[TS]', SUBSTR(?thisSequenceValue, ?thisPositionOn44, (?thisPositionOn45 - ?thisPositionOn44)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01630a40')) AS ?annotation40) .
BIND(?this AS ?pfs39) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch255 faldo:location ?templateMotifSequenceMatchRegionP33937256 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP33937258 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP33937MF_01630251 .
?templateMotifSequenceMatchRegionP33937256 faldo:begin ?templateMotifSequenceMatchBeginP33937257 .
?templateMotifSequenceMatchBeginP33937257 faldo:position ?templateMotifSequenceMatchBeginPositionP33937252 ;
faldo:reference isoform:P33937-1 .
?templateMotifSequenceProfileAlignmentOperationP33937258 edam:has_input signature:MF_01630 ;
rdf:type edam:operation_0300 .
?targetMotifMatch259 faldo:location ?targetMotifMatchRegionMatch260 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01630262 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP33937MF_01630253 .
?targetMotifMatchRegionMatch260 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01630261 .
?targetMotifMatchRegionMatchBeginMF_01630261 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01630254 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01630262 edam:has_input signature:MF_01630 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33937MF_01630251, 1, (STRLEN(?templateMotifCigarP33937MF_01630251) - STRLEN(REPLACE(?templateMotifCigarP33937MF_01630251, CONCAT('^(?:-*[^-]){', STR(((46 - ?templateMotifSequenceMatchBeginPositionP33937252) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1263) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33937MF_01630253, 1, (STRLEN(?targetMotifMatchCigarP33937MF_01630253) - STRLEN(REPLACE(?targetMotifMatchCigarP33937MF_01630253, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1263), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33937MF_01630253, 1, (STRLEN(?targetMotifMatchCigarP33937MF_01630253) - STRLEN(REPLACE(?targetMotifMatchCigarP33937MF_01630253, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1263), '}'), '')))), '[^-]', ''))) AS ?step2264) .
BIND(((?step2264 + ?targetMotifMatchRegionMatchBeginPositionMF_01630254) - 1) AS ?thisPositionOn51) .
BIND(?thisPositionOn51 AS ?thisPositionOn52) .
BIND(?this AS ?pfs1t265) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfsb48) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfse49) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn51, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_01630a47')) AS ?annotation47) .
BIND(?this AS ?pfs46) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch270 faldo:location ?templateMotifSequenceMatchRegionP33937271 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP33937273 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP33937MF_01630266 .
?templateMotifSequenceMatchRegionP33937271 faldo:begin ?templateMotifSequenceMatchBeginP33937272 .
?templateMotifSequenceMatchBeginP33937272 faldo:position ?templateMotifSequenceMatchBeginPositionP33937267 ;
faldo:reference isoform:P33937-1 .
?templateMotifSequenceProfileAlignmentOperationP33937273 edam:has_input signature:MF_01630 ;
rdf:type edam:operation_0300 .
?targetMotifMatch274 faldo:location ?targetMotifMatchRegionMatch275 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01630277 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP33937MF_01630268 .
?targetMotifMatchRegionMatch275 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01630276 .
?targetMotifMatchRegionMatchBeginMF_01630276 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01630269 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01630277 edam:has_input signature:MF_01630 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33937MF_01630266, 1, (STRLEN(?templateMotifCigarP33937MF_01630266) - STRLEN(REPLACE(?templateMotifCigarP33937MF_01630266, CONCAT('^(?:-*[^-]){', STR(((49 - ?templateMotifSequenceMatchBeginPositionP33937267) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1278) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33937MF_01630268, 1, (STRLEN(?targetMotifMatchCigarP33937MF_01630268) - STRLEN(REPLACE(?targetMotifMatchCigarP33937MF_01630268, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1278), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33937MF_01630268, 1, (STRLEN(?targetMotifMatchCigarP33937MF_01630268) - STRLEN(REPLACE(?targetMotifMatchCigarP33937MF_01630268, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1278), '}'), '')))), '[^-]', ''))) AS ?step2279) .
BIND(((?step2279 + ?targetMotifMatchRegionMatchBeginPositionMF_01630269) - 1) AS ?thisPositionOn58) .
BIND(?thisPositionOn58 AS ?thisPositionOn59) .
BIND(?this AS ?pfs1t280) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfsb55) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfse56) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn58, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_01630a54')) AS ?annotation54) .
BIND(?this AS ?pfs53) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch285 faldo:location ?templateMotifSequenceMatchRegionP33937286 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP33937288 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP33937MF_01630281 .
?templateMotifSequenceMatchRegionP33937286 faldo:begin ?templateMotifSequenceMatchBeginP33937287 .
?templateMotifSequenceMatchBeginP33937287 faldo:position ?templateMotifSequenceMatchBeginPositionP33937282 ;
faldo:reference isoform:P33937-1 .
?templateMotifSequenceProfileAlignmentOperationP33937288 edam:has_input signature:MF_01630 ;
rdf:type edam:operation_0300 .
?targetMotifMatch289 faldo:location ?targetMotifMatchRegionMatch290 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01630292 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP33937MF_01630283 .
?targetMotifMatchRegionMatch290 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01630291 .
?targetMotifMatchRegionMatchBeginMF_01630291 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01630284 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01630292 edam:has_input signature:MF_01630 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33937MF_01630281, 1, (STRLEN(?templateMotifCigarP33937MF_01630281) - STRLEN(REPLACE(?templateMotifCigarP33937MF_01630281, CONCAT('^(?:-*[^-]){', STR(((53 - ?templateMotifSequenceMatchBeginPositionP33937282) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1293) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33937MF_01630283, 1, (STRLEN(?targetMotifMatchCigarP33937MF_01630283) - STRLEN(REPLACE(?targetMotifMatchCigarP33937MF_01630283, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1293), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33937MF_01630283, 1, (STRLEN(?targetMotifMatchCigarP33937MF_01630283) - STRLEN(REPLACE(?targetMotifMatchCigarP33937MF_01630283, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1293), '}'), '')))), '[^-]', ''))) AS ?step2294) .
BIND(((?step2294 + ?targetMotifMatchRegionMatchBeginPositionMF_01630284) - 1) AS ?thisPositionOn65) .
BIND(?thisPositionOn65 AS ?thisPositionOn66) .
BIND(?this AS ?pfs1t295) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn65))) AS ?pfsb62) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfse63) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn65, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_01630a61')) AS ?annotation61) .
BIND(?this AS ?pfs60) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch300 faldo:location ?templateMotifSequenceMatchRegionP33937301 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP33937303 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP33937MF_01630296 .
?templateMotifSequenceMatchRegionP33937301 faldo:begin ?templateMotifSequenceMatchBeginP33937302 .
?templateMotifSequenceMatchBeginP33937302 faldo:position ?templateMotifSequenceMatchBeginPositionP33937297 ;
faldo:reference isoform:P33937-1 .
?templateMotifSequenceProfileAlignmentOperationP33937303 edam:has_input signature:MF_01630 ;
rdf:type edam:operation_0300 .
?targetMotifMatch304 faldo:location ?targetMotifMatchRegionMatch305 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01630307 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP33937MF_01630298 .
?targetMotifMatchRegionMatch305 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01630306 .
?targetMotifMatchRegionMatchBeginMF_01630306 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01630299 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01630307 edam:has_input signature:MF_01630 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33937MF_01630296, 1, (STRLEN(?templateMotifCigarP33937MF_01630296) - STRLEN(REPLACE(?templateMotifCigarP33937MF_01630296, CONCAT('^(?:-*[^-]){', STR(((81 - ?templateMotifSequenceMatchBeginPositionP33937297) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1308) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33937MF_01630298, 1, (STRLEN(?targetMotifMatchCigarP33937MF_01630298) - STRLEN(REPLACE(?targetMotifMatchCigarP33937MF_01630298, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1308), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33937MF_01630298, 1, (STRLEN(?targetMotifMatchCigarP33937MF_01630298) - STRLEN(REPLACE(?targetMotifMatchCigarP33937MF_01630298, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1308), '}'), '')))), '[^-]', ''))) AS ?step2309) .
BIND(((?step2309 + ?targetMotifMatchRegionMatchBeginPositionMF_01630299) - 1) AS ?thisPositionOn72) .
BIND(?thisPositionOn72 AS ?thisPositionOn73) .
BIND(?this AS ?pfs1t310) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn72))) AS ?pfsb69) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfse70) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn72, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_01630a68')) AS ?annotation68) .
BIND(?this AS ?pfs67) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch315 faldo:location ?templateMotifSequenceMatchRegionP33937316 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP33937318 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP33937MF_01630311 .
?templateMotifSequenceMatchRegionP33937316 faldo:begin ?templateMotifSequenceMatchBeginP33937317 .
?templateMotifSequenceMatchBeginP33937317 faldo:position ?templateMotifSequenceMatchBeginPositionP33937312 ;
faldo:reference isoform:P33937-1 .
?templateMotifSequenceProfileAlignmentOperationP33937318 edam:has_input signature:MF_01630 ;
rdf:type edam:operation_0300 .
?targetMotifMatch319 faldo:location ?targetMotifMatchRegionMatch320 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01630322 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP33937MF_01630313 .
?targetMotifMatchRegionMatch320 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01630321 .
?targetMotifMatchRegionMatchBeginMF_01630321 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01630314 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01630322 edam:has_input signature:MF_01630 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33937MF_01630311, 1, (STRLEN(?templateMotifCigarP33937MF_01630311) - STRLEN(REPLACE(?templateMotifCigarP33937MF_01630311, CONCAT('^(?:-*[^-]){', STR(((83 - ?templateMotifSequenceMatchBeginPositionP33937312) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1323) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33937MF_01630313, 1, (STRLEN(?targetMotifMatchCigarP33937MF_01630313) - STRLEN(REPLACE(?targetMotifMatchCigarP33937MF_01630313, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1323), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33937MF_01630313, 1, (STRLEN(?targetMotifMatchCigarP33937MF_01630313) - STRLEN(REPLACE(?targetMotifMatchCigarP33937MF_01630313, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1323), '}'), '')))), '[^-]', ''))) AS ?step2324) .
BIND(((?step2324 + ?targetMotifMatchRegionMatchBeginPositionMF_01630314) - 1) AS ?thisPositionOn79) .
BIND(?thisPositionOn79 AS ?thisPositionOn80) .
BIND(?this AS ?pfs1t325) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn79))) AS ?pfsb76) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn80))) AS ?pfse77) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn79, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01630a75')) AS ?annotation75) .
BIND(?this AS ?pfs74) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch330 faldo:location ?templateMotifSequenceMatchRegionP33937331 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP33937333 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP33937MF_01630326 .
?templateMotifSequenceMatchRegionP33937331 faldo:begin ?templateMotifSequenceMatchBeginP33937332 .
?templateMotifSequenceMatchBeginP33937332 faldo:position ?templateMotifSequenceMatchBeginPositionP33937327 ;
faldo:reference isoform:P33937-1 .
?templateMotifSequenceProfileAlignmentOperationP33937333 edam:has_input signature:MF_01630 ;
rdf:type edam:operation_0300 .
?targetMotifMatch334 faldo:location ?targetMotifMatchRegionMatch335 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01630337 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP33937MF_01630328 .
?targetMotifMatchRegionMatch335 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01630336 .
?targetMotifMatchRegionMatchBeginMF_01630336 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01630329 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01630337 edam:has_input signature:MF_01630 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33937MF_01630326, 1, (STRLEN(?templateMotifCigarP33937MF_01630326) - STRLEN(REPLACE(?templateMotifCigarP33937MF_01630326, CONCAT('^(?:-*[^-]){', STR(((150 - ?templateMotifSequenceMatchBeginPositionP33937327) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1338) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33937MF_01630328, 1, (STRLEN(?targetMotifMatchCigarP33937MF_01630328) - STRLEN(REPLACE(?targetMotifMatchCigarP33937MF_01630328, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1338), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33937MF_01630328, 1, (STRLEN(?targetMotifMatchCigarP33937MF_01630328) - STRLEN(REPLACE(?targetMotifMatchCigarP33937MF_01630328, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1338), '}'), '')))), '[^-]', ''))) AS ?step2339) .
BIND(((?step2339 + ?targetMotifMatchRegionMatchBeginPositionMF_01630329) - 1) AS ?thisPositionOn86) .
BIND(?thisPositionOn86 AS ?thisPositionOn87) .
BIND(?this AS ?pfs1t340) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn86))) AS ?pfsb83) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn87))) AS ?pfse84) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn86, 1) = 'Q')) .
BIND(URI(CONCAT(STR(?this), '#MF_01630a82')) AS ?annotation82) .
BIND(?this AS ?pfs81) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch345 faldo:location ?templateMotifSequenceMatchRegionP33937346 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP33937348 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP33937MF_01630341 .
?templateMotifSequenceMatchRegionP33937346 faldo:begin ?templateMotifSequenceMatchBeginP33937347 .
?templateMotifSequenceMatchBeginP33937347 faldo:position ?templateMotifSequenceMatchBeginPositionP33937342 ;
faldo:reference isoform:P33937-1 .
?templateMotifSequenceProfileAlignmentOperationP33937348 edam:has_input signature:MF_01630 ;
rdf:type edam:operation_0300 .
?targetMotifMatch349 faldo:location ?targetMotifMatchRegionMatch350 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01630352 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP33937MF_01630343 .
?targetMotifMatchRegionMatch350 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01630351 .
?targetMotifMatchRegionMatchBeginMF_01630351 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01630344 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01630352 edam:has_input signature:MF_01630 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33937MF_01630341, 1, (STRLEN(?templateMotifCigarP33937MF_01630341) - STRLEN(REPLACE(?templateMotifCigarP33937MF_01630341, CONCAT('^(?:-*[^-]){', STR(((175 - ?templateMotifSequenceMatchBeginPositionP33937342) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1353) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33937MF_01630343, 1, (STRLEN(?targetMotifMatchCigarP33937MF_01630343) - STRLEN(REPLACE(?targetMotifMatchCigarP33937MF_01630343, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1353), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33937MF_01630343, 1, (STRLEN(?targetMotifMatchCigarP33937MF_01630343) - STRLEN(REPLACE(?targetMotifMatchCigarP33937MF_01630343, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1353), '}'), '')))), '[^-]', ''))) AS ?step2354) .
BIND(((?step2354 + ?targetMotifMatchRegionMatchBeginPositionMF_01630344) - 1) AS ?thisPositionOn93) .
BIND(?thisPositionOn93 AS ?thisPositionOn94) .
BIND(?this AS ?pfs1t355) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn93))) AS ?pfsb90) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn94))) AS ?pfse91) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn93, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_01630a89')) AS ?annotation89) .
BIND(?this AS ?pfs88) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch360 faldo:location ?templateMotifSequenceMatchRegionP33937361 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP33937363 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP33937MF_01630356 .
?templateMotifSequenceMatchRegionP33937361 faldo:begin ?templateMotifSequenceMatchBeginP33937362 .
?templateMotifSequenceMatchBeginP33937362 faldo:position ?templateMotifSequenceMatchBeginPositionP33937357 ;
faldo:reference isoform:P33937-1 .
?templateMotifSequenceProfileAlignmentOperationP33937363 edam:has_input signature:MF_01630 ;
rdf:type edam:operation_0300 .
?targetMotifMatch364 faldo:location ?targetMotifMatchRegionMatch365 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01630367 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP33937MF_01630358 .
?targetMotifMatchRegionMatch365 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01630366 .
?targetMotifMatchRegionMatchBeginMF_01630366 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01630359 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01630367 edam:has_input signature:MF_01630 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33937MF_01630356, 1, (STRLEN(?templateMotifCigarP33937MF_01630356) - STRLEN(REPLACE(?templateMotifCigarP33937MF_01630356, CONCAT('^(?:-*[^-]){', STR(((179 - ?templateMotifSequenceMatchBeginPositionP33937357) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1368) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33937MF_01630358, 1, (STRLEN(?targetMotifMatchCigarP33937MF_01630358) - STRLEN(REPLACE(?targetMotifMatchCigarP33937MF_01630358, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1368), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33937MF_01630358, 1, (STRLEN(?targetMotifMatchCigarP33937MF_01630358) - STRLEN(REPLACE(?targetMotifMatchCigarP33937MF_01630358, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1368), '}'), '')))), '[^-]', ''))) AS ?step2369) .
BIND(((?step2369 + ?targetMotifMatchRegionMatchBeginPositionMF_01630359) - 1) AS ?thisPositionOn100) .
BIND(?thisPositionOn100 AS ?thisPositionOn101) .
BIND(?this AS ?pfs1t370) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn100))) AS ?pfsb97) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn101))) AS ?pfse98) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn100, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_01630a96')) AS ?annotation96) .
BIND(?this AS ?pfs95) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch375 faldo:location ?templateMotifSequenceMatchRegionP33937376 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP33937378 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP33937MF_01630371 .
?templateMotifSequenceMatchRegionP33937376 faldo:begin ?templateMotifSequenceMatchBeginP33937377 .
?templateMotifSequenceMatchBeginP33937377 faldo:position ?templateMotifSequenceMatchBeginPositionP33937372 ;
faldo:reference isoform:P33937-1 .
?templateMotifSequenceProfileAlignmentOperationP33937378 edam:has_input signature:MF_01630 ;
rdf:type edam:operation_0300 .
?targetMotifMatch379 faldo:location ?targetMotifMatchRegionMatch380 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01630382 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP33937MF_01630373 .
?targetMotifMatchRegionMatch380 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01630381 .
?targetMotifMatchRegionMatchBeginMF_01630381 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01630374 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01630382 edam:has_input signature:MF_01630 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33937MF_01630371, 1, (STRLEN(?templateMotifCigarP33937MF_01630371) - STRLEN(REPLACE(?templateMotifCigarP33937MF_01630371, CONCAT('^(?:-*[^-]){', STR(((372 - ?templateMotifSequenceMatchBeginPositionP33937372) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1383) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33937MF_01630373, 1, (STRLEN(?targetMotifMatchCigarP33937MF_01630373) - STRLEN(REPLACE(?targetMotifMatchCigarP33937MF_01630373, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1383), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33937MF_01630373, 1, (STRLEN(?targetMotifMatchCigarP33937MF_01630373) - STRLEN(REPLACE(?targetMotifMatchCigarP33937MF_01630373, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1383), '}'), '')))), '[^-]', ''))) AS ?step2384) .
BIND(((?step2384 + ?targetMotifMatchRegionMatchBeginPositionMF_01630374) - 1) AS ?thisPositionOn107) .
BIND(?thisPositionOn107 AS ?thisPositionOn108) .
BIND(?this AS ?pfs1t385) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn107))) AS ?pfsb104) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn108))) AS ?pfse105) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn107, 1) = 'M')) .
BIND(URI(CONCAT(STR(?this), '#MF_01630a103')) AS ?annotation103) .
BIND(?this AS ?pfs102) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch390 faldo:location ?templateMotifSequenceMatchRegionP33937391 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP33937393 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP33937MF_01630386 .
?templateMotifSequenceMatchRegionP33937391 faldo:begin ?templateMotifSequenceMatchBeginP33937392 .
?templateMotifSequenceMatchBeginP33937392 faldo:position ?templateMotifSequenceMatchBeginPositionP33937387 ;
faldo:reference isoform:P33937-1 .
?templateMotifSequenceProfileAlignmentOperationP33937393 edam:has_input signature:MF_01630 ;
rdf:type edam:operation_0300 .
?targetMotifMatch394 faldo:location ?targetMotifMatchRegionMatch395 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01630397 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP33937MF_01630388 .
?targetMotifMatchRegionMatch395 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01630396 .
?targetMotifMatchRegionMatchBeginMF_01630396 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01630389 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01630397 edam:has_input signature:MF_01630 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33937MF_01630386, 1, (STRLEN(?templateMotifCigarP33937MF_01630386) - STRLEN(REPLACE(?templateMotifCigarP33937MF_01630386, CONCAT('^(?:-*[^-]){', STR(((376 - ?templateMotifSequenceMatchBeginPositionP33937387) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1398) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33937MF_01630388, 1, (STRLEN(?targetMotifMatchCigarP33937MF_01630388) - STRLEN(REPLACE(?targetMotifMatchCigarP33937MF_01630388, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1398), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33937MF_01630388, 1, (STRLEN(?targetMotifMatchCigarP33937MF_01630388) - STRLEN(REPLACE(?targetMotifMatchCigarP33937MF_01630388, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1398), '}'), '')))), '[^-]', ''))) AS ?step2399) .
BIND(((?step2399 + ?targetMotifMatchRegionMatchBeginPositionMF_01630389) - 1) AS ?thisPositionOn114) .
BIND(?thisPositionOn114 AS ?thisPositionOn115) .
BIND(?this AS ?pfs1t400) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn114))) AS ?pfsb111) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn115))) AS ?pfse112) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn114, 1) = 'Q')) .
BIND(URI(CONCAT(STR(?this), '#MF_01630a110')) AS ?annotation110) .
BIND(?this AS ?pfs109) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch405 faldo:location ?templateMotifSequenceMatchRegionP33937406 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP33937408 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP33937MF_01630401 .
?templateMotifSequenceMatchRegionP33937406 faldo:begin ?templateMotifSequenceMatchBeginP33937407 .
?templateMotifSequenceMatchBeginP33937407 faldo:position ?templateMotifSequenceMatchBeginPositionP33937402 ;
faldo:reference isoform:P33937-1 .
?templateMotifSequenceProfileAlignmentOperationP33937408 edam:has_input signature:MF_01630 ;
rdf:type edam:operation_0300 .
?targetMotifMatch409 faldo:location ?targetMotifMatchRegionMatch410 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01630412 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP33937MF_01630403 .
?targetMotifMatchRegionMatch410 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01630411 .
?targetMotifMatchRegionMatchBeginMF_01630411 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01630404 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01630412 edam:has_input signature:MF_01630 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33937MF_01630401, 1, (STRLEN(?templateMotifCigarP33937MF_01630401) - STRLEN(REPLACE(?templateMotifCigarP33937MF_01630401, CONCAT('^(?:-*[^-]){', STR(((482 - ?templateMotifSequenceMatchBeginPositionP33937402) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1413) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33937MF_01630403, 1, (STRLEN(?targetMotifMatchCigarP33937MF_01630403) - STRLEN(REPLACE(?targetMotifMatchCigarP33937MF_01630403, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1413), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33937MF_01630403, 1, (STRLEN(?targetMotifMatchCigarP33937MF_01630403) - STRLEN(REPLACE(?targetMotifMatchCigarP33937MF_01630403, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1413), '}'), '')))), '[^-]', ''))) AS ?step2414) .
BIND(((?step2414 + ?targetMotifMatchRegionMatchBeginPositionMF_01630404) - 1) AS ?thisPositionOn121) .
BIND(?thisPositionOn121 AS ?thisPositionOn122) .
BIND(?this AS ?pfs1t415) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn121))) AS ?pfsb118) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn122))) AS ?pfse119) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn121, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_01630a117')) AS ?annotation117) .
BIND(?this AS ?pfs116) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch420 faldo:location ?templateMotifSequenceMatchRegionP33937421 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP33937423 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP33937MF_01630416 .
?templateMotifSequenceMatchRegionP33937421 faldo:begin ?templateMotifSequenceMatchBeginP33937422 .
?templateMotifSequenceMatchBeginP33937422 faldo:position ?templateMotifSequenceMatchBeginPositionP33937417 ;
faldo:reference isoform:P33937-1 .
?templateMotifSequenceProfileAlignmentOperationP33937423 edam:has_input signature:MF_01630 ;
rdf:type edam:operation_0300 .
?targetMotifMatch424 faldo:location ?targetMotifMatchRegionMatch425 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01630427 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP33937MF_01630418 .
?targetMotifMatchRegionMatch425 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01630426 .
?targetMotifMatchRegionMatchBeginMF_01630426 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01630419 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01630427 edam:has_input signature:MF_01630 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33937MF_01630416, 1, (STRLEN(?templateMotifCigarP33937MF_01630416) - STRLEN(REPLACE(?templateMotifCigarP33937MF_01630416, CONCAT('^(?:-*[^-]){', STR(((531 - ?templateMotifSequenceMatchBeginPositionP33937417) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1428) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33937MF_01630418, 1, (STRLEN(?targetMotifMatchCigarP33937MF_01630418) - STRLEN(REPLACE(?targetMotifMatchCigarP33937MF_01630418, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1428), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33937MF_01630418, 1, (STRLEN(?targetMotifMatchCigarP33937MF_01630418) - STRLEN(REPLACE(?targetMotifMatchCigarP33937MF_01630418, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1428), '}'), '')))), '[^-]', ''))) AS ?step2429) .
BIND(((?step2429 + ?targetMotifMatchRegionMatchBeginPositionMF_01630419) - 1) AS ?thisPositionOn128) .
BIND(?thisPositionOn128 AS ?thisPositionOn129) .
BIND(?this AS ?pfs1t430) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn128))) AS ?pfsb125) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn129))) AS ?pfse126) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn128, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01630a124')) AS ?annotation124) .
BIND(?this AS ?pfs123) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch435 faldo:location ?templateMotifSequenceMatchRegionP33937436 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP33937438 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP33937MF_01630431 .
?templateMotifSequenceMatchRegionP33937436 faldo:begin ?templateMotifSequenceMatchBeginP33937437 .
?templateMotifSequenceMatchBeginP33937437 faldo:position ?templateMotifSequenceMatchBeginPositionP33937432 ;
faldo:reference isoform:P33937-1 .
?templateMotifSequenceProfileAlignmentOperationP33937438 edam:has_input signature:MF_01630 ;
rdf:type edam:operation_0300 .
?targetMotifMatch439 faldo:location ?targetMotifMatchRegionMatch440 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01630442 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP33937MF_01630433 .
?targetMotifMatchRegionMatch440 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01630441 .
?targetMotifMatchRegionMatchBeginMF_01630441 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01630434 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01630442 edam:has_input signature:MF_01630 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33937MF_01630431, 1, (STRLEN(?templateMotifCigarP33937MF_01630431) - STRLEN(REPLACE(?templateMotifCigarP33937MF_01630431, CONCAT('^(?:-*[^-]){', STR(((558 - ?templateMotifSequenceMatchBeginPositionP33937432) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1443) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33937MF_01630433, 1, (STRLEN(?targetMotifMatchCigarP33937MF_01630433) - STRLEN(REPLACE(?targetMotifMatchCigarP33937MF_01630433, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1443), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33937MF_01630433, 1, (STRLEN(?targetMotifMatchCigarP33937MF_01630433) - STRLEN(REPLACE(?targetMotifMatchCigarP33937MF_01630433, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1443), '}'), '')))), '[^-]', ''))) AS ?step2444) .
BIND(((?step2444 + ?targetMotifMatchRegionMatchBeginPositionMF_01630434) - 1) AS ?thisPositionOn135) .
BIND(?thisPositionOn135 AS ?thisPositionOn136) .
BIND(?this AS ?pfs1t445) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn135))) AS ?pfsb132) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn136))) AS ?pfse133) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn135, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01630a131')) AS ?annotation131) .
BIND(?this AS ?pfs130) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch450 faldo:location ?templateMotifSequenceMatchRegionP33937451 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP33937453 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP33937MF_01630446 .
?templateMotifSequenceMatchRegionP33937451 faldo:begin ?templateMotifSequenceMatchBeginP33937452 .
?templateMotifSequenceMatchBeginP33937452 faldo:position ?templateMotifSequenceMatchBeginPositionP33937447 ;
faldo:reference isoform:P33937-1 .
?templateMotifSequenceProfileAlignmentOperationP33937453 edam:has_input signature:MF_01630 ;
rdf:type edam:operation_0300 .
?targetMotifMatch454 faldo:location ?targetMotifMatchRegionMatch455 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01630457 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP33937MF_01630448 .
?targetMotifMatchRegionMatch455 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01630456 .
?targetMotifMatchRegionMatchBeginMF_01630456 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01630449 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01630457 edam:has_input signature:MF_01630 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33937MF_01630446, 1, (STRLEN(?templateMotifCigarP33937MF_01630446) - STRLEN(REPLACE(?templateMotifCigarP33937MF_01630446, CONCAT('^(?:-*[^-]){', STR(((794 - ?templateMotifSequenceMatchBeginPositionP33937447) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1458) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33937MF_01630448, 1, (STRLEN(?targetMotifMatchCigarP33937MF_01630448) - STRLEN(REPLACE(?targetMotifMatchCigarP33937MF_01630448, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1458), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33937MF_01630448, 1, (STRLEN(?targetMotifMatchCigarP33937MF_01630448) - STRLEN(REPLACE(?targetMotifMatchCigarP33937MF_01630448, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1458), '}'), '')))), '[^-]', ''))) AS ?step2459) .
BIND(((?step2459 + ?targetMotifMatchRegionMatchBeginPositionMF_01630449) - 1) AS ?thisPositionOn143) .
BIND(?thisPositionOn143 AS ?thisPositionOn144) .
BIND(?this AS ?pfs1t460) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn143))) AS ?pfsb139) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn144))) AS ?pfse140) .
FILTER (REGEX('[FW]', SUBSTR(?thisSequenceValue, ?thisPositionOn143, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01630a138')) AS ?annotation138) .
BIND(?this AS ?pfs137) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch465 faldo:location ?templateMotifSequenceMatchRegionP33937466 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP33937468 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP33937MF_01630461 .
?templateMotifSequenceMatchRegionP33937466 faldo:begin ?templateMotifSequenceMatchBeginP33937467 .
?templateMotifSequenceMatchBeginP33937467 faldo:position ?templateMotifSequenceMatchBeginPositionP33937462 ;
faldo:reference isoform:P33937-1 .
?templateMotifSequenceProfileAlignmentOperationP33937468 edam:has_input signature:MF_01630 ;
rdf:type edam:operation_0300 .
?targetMotifMatch469 faldo:location ?targetMotifMatchRegionMatch470 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01630472 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP33937MF_01630463 .
?targetMotifMatchRegionMatch470 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01630471 .
?targetMotifMatchRegionMatchBeginMF_01630471 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01630464 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01630472 edam:has_input signature:MF_01630 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33937MF_01630461, 1, (STRLEN(?templateMotifCigarP33937MF_01630461) - STRLEN(REPLACE(?templateMotifCigarP33937MF_01630461, CONCAT('^(?:-*[^-]){', STR(((802 - ?templateMotifSequenceMatchBeginPositionP33937462) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1473) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33937MF_01630463, 1, (STRLEN(?targetMotifMatchCigarP33937MF_01630463) - STRLEN(REPLACE(?targetMotifMatchCigarP33937MF_01630463, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1473), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33937MF_01630463, 1, (STRLEN(?targetMotifMatchCigarP33937MF_01630463) - STRLEN(REPLACE(?targetMotifMatchCigarP33937MF_01630463, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1473), '}'), '')))), '[^-]', ''))) AS ?step2474) .
BIND(((?step2474 + ?targetMotifMatchRegionMatchBeginPositionMF_01630464) - 1) AS ?thisPositionOn150) .
BIND(?thisPositionOn150 AS ?thisPositionOn151) .
BIND(?this AS ?pfs1t475) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn150))) AS ?pfsb147) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn151))) AS ?pfse148) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn150, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_01630a146')) AS ?annotation146) .
BIND(?this AS ?pfs145) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch480 faldo:location ?templateMotifSequenceMatchRegionP33937481 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP33937483 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP33937MF_01630476 .
?templateMotifSequenceMatchRegionP33937481 faldo:begin ?templateMotifSequenceMatchBeginP33937482 .
?templateMotifSequenceMatchBeginP33937482 faldo:position ?templateMotifSequenceMatchBeginPositionP33937477 ;
faldo:reference isoform:P33937-1 .
?templateMotifSequenceProfileAlignmentOperationP33937483 edam:has_input signature:MF_01630 ;
rdf:type edam:operation_0300 .
?targetMotifMatch484 faldo:location ?targetMotifMatchRegionMatch485 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01630487 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP33937MF_01630478 .
?targetMotifMatchRegionMatch485 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01630486 .
?targetMotifMatchRegionMatchBeginMF_01630486 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01630479 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01630487 edam:has_input signature:MF_01630 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33937MF_01630476, 1, (STRLEN(?templateMotifCigarP33937MF_01630476) - STRLEN(REPLACE(?templateMotifCigarP33937MF_01630476, CONCAT('^(?:-*[^-]){', STR(((819 - ?templateMotifSequenceMatchBeginPositionP33937477) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1488) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33937MF_01630478, 1, (STRLEN(?targetMotifMatchCigarP33937MF_01630478) - STRLEN(REPLACE(?targetMotifMatchCigarP33937MF_01630478, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1488), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33937MF_01630478, 1, (STRLEN(?targetMotifMatchCigarP33937MF_01630478) - STRLEN(REPLACE(?targetMotifMatchCigarP33937MF_01630478, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1488), '}'), '')))), '[^-]', ''))) AS ?step2489) .
BIND(((?step2489 + ?targetMotifMatchRegionMatchBeginPositionMF_01630479) - 1) AS ?thisPositionOn157) .
BIND(?thisPositionOn157 AS ?thisPositionOn158) .
BIND(?this AS ?pfs1t490) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn157))) AS ?pfsb154) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn158))) AS ?pfse155) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn157, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01630a153')) AS ?annotation153) .
BIND(?this AS ?pfs152) .
}
OPTIONAL {
?this a up:Protein .
?this rdfs:seeAlso .
BIND(?this AS ?case6) .
}
OPTIONAL {
?this a up:Protein .
{
{
?this up:proteome .
} UNION {
?this up:proteome ?p491 .
?p491 skos:narrower .
}
} UNION {
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:1224 .
}
BIND(?this AS ?case7) .
BIND(URI(CONCAT(STR(?this), '#MF_01630a8')) AS ?name8) .
}
OPTIONAL {
?this a up:Protein .
{
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
{
?this up:proteome .
} UNION {
?this up:proteome ?p492 .
?p492 skos:narrower .
}
})) .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:1224 .
})) .
} UNION {
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
{
?this up:proteome .
} UNION {
?this up:proteome ?p493 .
?p493 skos:narrower .
}
})) .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:1224 .
})) .
}
BIND(?this AS ?case9) .
BIND(URI(CONCAT(STR(?this), '#MF_01630a10')) AS ?name10) .
}
OPTIONAL {
?this up:annotation ?samsignal494 ;
up:sequence ?thisSequence .
?samsignal494 up:range ?samsignalr495 ;
rdf:type up:Signal_Peptide_Annotation .
?samsignalr495 faldo:begin ?samsignalb496 ;
faldo:end ?samsignale497 .
?samsignalb496 faldo:position ?samsignalbp498 ;
faldo:reference ?thisSequence .
?samsignale497 faldo:position ?samsignalep499 ;
faldo:reference ?thisSequence .
BIND(?this AS ?sam159) .
}
BIND(URI(CONCAT(STR(?this), '#MF_01630a165')) AS ?keyword165) .
}
"xsd:string |
