| http://purl.uniprot.org/unirules/MF_01844#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
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rdf:type up:Structured_Name .
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rdf:type up:Structured_Name .
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up:attribution _:645796 ;
rdf:subject ?pfs141 ;
rdf:predicate up:annotation ;
rdf:object ?annotation142 .
_:645868 a rdf:Statement ;
up:source unirule:MF_01844 ;
rdf:subject ?pfs147 ;
rdf:predicate up:annotation ;
rdf:object ?annotation148 .
_:645869 a rdf:Statement ;
up:attribution _:645797 ;
rdf:subject ?pfs147 ;
rdf:predicate up:annotation ;
rdf:object ?annotation148 .
_:645870 a rdf:Statement ;
up:source unirule:MF_01844 ;
rdf:subject ?pfs153 ;
rdf:predicate up:annotation ;
rdf:object ?annotation154 .
_:645871 a rdf:Statement ;
up:attribution _:645798 ;
rdf:subject ?pfs153 ;
rdf:predicate up:annotation ;
rdf:object ?annotation154 .
_:645872 a rdf:Statement ;
up:attribution _:645799 ;
rdf:subject ?sam159 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:645873 a rdf:Statement ;
up:attribution _:645800 ;
rdf:subject ?sam159 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:812 .
_:645874 a rdf:Statement ;
up:attribution _:645801 ;
rdf:subject ?sam159 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1133 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01844
#Rule MF_01844 Created by:? on:2008-04-22 Modified by:Edouard de Castro on:2024-09-02
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01844 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_01844a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01844a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01844a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01844a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01844a6')) AS ?annotation6) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch173 faldo:location ?templateMotifSequenceMatchRegionP13738174 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP13738176 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP13738MF_01844169 .
?templateMotifSequenceMatchRegionP13738174 faldo:begin ?templateMotifSequenceMatchBeginP13738175 .
?templateMotifSequenceMatchBeginP13738175 faldo:position ?templateMotifSequenceMatchBeginPositionP13738170 ;
faldo:reference isoform:P13738-1 .
?templateMotifSequenceProfileAlignmentOperationP13738176 edam:has_input signature:MF_01844 ;
rdf:type edam:operation_0300 .
?targetMotifMatch177 faldo:location ?targetMotifMatchRegionMatch178 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01844180 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP13738MF_01844171 .
?targetMotifMatchRegionMatch178 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01844179 .
?targetMotifMatchRegionMatchBeginMF_01844179 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01844172 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01844180 edam:has_input signature:MF_01844 ;
rdf:type edam:operation_0300 .
VALUES ?supertaxon168 {taxon:620 taxon:561}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon168 .
BIND(1 AS ?thisPositionOn13) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13738MF_01844169, 1, (STRLEN(?templateMotifCigarP13738MF_01844169) - STRLEN(REPLACE(?templateMotifCigarP13738MF_01844169, CONCAT('^(?:-*[^-]){', STR(((11 - ?templateMotifSequenceMatchBeginPositionP13738170) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1181) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13738MF_01844171, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844171) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844171, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1181), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13738MF_01844171, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844171) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844171, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1181), '}'), '')))), '[^-]', ''))) AS ?step2182) .
BIND(((?step2182 + ?targetMotifMatchRegionMatchBeginPositionMF_01844172) - 1) AS ?thisPositionOn14) .
BIND(?this AS ?pfs1t183) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb11) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse12) .
FILTER ((BOUND(?thisPositionOn13) && BOUND(?thisPositionOn14))) .
BIND(URI(CONCAT(STR(?this), '#MF_01844a10')) AS ?annotation10) .
BIND(?this AS ?pfs9) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch189 faldo:location ?templateMotifSequenceMatchRegionP13738190 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP13738192 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP13738MF_01844185 .
?templateMotifSequenceMatchRegionP13738190 faldo:begin ?templateMotifSequenceMatchBeginP13738191 .
?templateMotifSequenceMatchBeginP13738191 faldo:position ?templateMotifSequenceMatchBeginPositionP13738186 ;
faldo:reference isoform:P13738-1 .
?templateMotifSequenceProfileAlignmentOperationP13738192 edam:has_input signature:MF_01844 ;
rdf:type edam:operation_0300 .
?targetMotifMatch193 faldo:location ?targetMotifMatchRegionMatch194 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01844196 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP13738MF_01844187 .
?targetMotifMatchRegionMatch194 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01844195 .
?targetMotifMatchRegionMatchBeginMF_01844195 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01844188 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01844196 edam:has_input signature:MF_01844 ;
rdf:type edam:operation_0300 .
VALUES ?supertaxon184 {taxon:620 taxon:561}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon184 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13738MF_01844185, 1, (STRLEN(?templateMotifCigarP13738MF_01844185) - STRLEN(REPLACE(?templateMotifCigarP13738MF_01844185, CONCAT('^(?:-*[^-]){', STR(((12 - ?templateMotifSequenceMatchBeginPositionP13738186) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1197) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13738MF_01844187, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844187) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844187, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1197), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13738MF_01844187, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844187) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844187, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1197), '}'), '')))), '[^-]', ''))) AS ?step2198) .
BIND(((?step2198 + ?targetMotifMatchRegionMatchBeginPositionMF_01844188) - 1) AS ?thisPositionOn19) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13738MF_01844185, 1, (STRLEN(?templateMotifCigarP13738MF_01844185) - STRLEN(REPLACE(?templateMotifCigarP13738MF_01844185, CONCAT('^(?:-*[^-]){', STR(((31 - ?templateMotifSequenceMatchBeginPositionP13738186) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1199) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13738MF_01844187, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844187) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844187, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1199), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13738MF_01844187, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844187) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844187, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1199), '}'), '')))), '[^-]', ''))) AS ?step2200) .
BIND(((?step2200 + ?targetMotifMatchRegionMatchBeginPositionMF_01844188) - 1) AS ?thisPositionOn20) .
BIND(?this AS ?pfs1t201) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb17) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse18) .
FILTER ((BOUND(?thisPositionOn19) && BOUND(?thisPositionOn20))) .
BIND(URI(CONCAT(STR(?this), '#MF_01844a16')) AS ?annotation16) .
BIND(?this AS ?pfs15) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch207 faldo:location ?templateMotifSequenceMatchRegionP13738208 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP13738210 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP13738MF_01844203 .
?templateMotifSequenceMatchRegionP13738208 faldo:begin ?templateMotifSequenceMatchBeginP13738209 .
?templateMotifSequenceMatchBeginP13738209 faldo:position ?templateMotifSequenceMatchBeginPositionP13738204 ;
faldo:reference isoform:P13738-1 .
?templateMotifSequenceProfileAlignmentOperationP13738210 edam:has_input signature:MF_01844 ;
rdf:type edam:operation_0300 .
?targetMotifMatch211 faldo:location ?targetMotifMatchRegionMatch212 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01844214 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP13738MF_01844205 .
?targetMotifMatchRegionMatch212 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01844213 .
?targetMotifMatchRegionMatchBeginMF_01844213 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01844206 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01844214 edam:has_input signature:MF_01844 ;
rdf:type edam:operation_0300 .
VALUES ?supertaxon202 {taxon:620 taxon:561}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon202 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13738MF_01844203, 1, (STRLEN(?templateMotifCigarP13738MF_01844203) - STRLEN(REPLACE(?templateMotifCigarP13738MF_01844203, CONCAT('^(?:-*[^-]){', STR(((32 - ?templateMotifSequenceMatchBeginPositionP13738204) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1215) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13738MF_01844205, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844205) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844205, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1215), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13738MF_01844205, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844205) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844205, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1215), '}'), '')))), '[^-]', ''))) AS ?step2216) .
BIND(((?step2216 + ?targetMotifMatchRegionMatchBeginPositionMF_01844206) - 1) AS ?thisPositionOn25) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13738MF_01844203, 1, (STRLEN(?templateMotifCigarP13738MF_01844203) - STRLEN(REPLACE(?templateMotifCigarP13738MF_01844203, CONCAT('^(?:-*[^-]){', STR(((58 - ?templateMotifSequenceMatchBeginPositionP13738204) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1217) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13738MF_01844205, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844205) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844205, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1217), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13738MF_01844205, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844205) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844205, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1217), '}'), '')))), '[^-]', ''))) AS ?step2218) .
BIND(((?step2218 + ?targetMotifMatchRegionMatchBeginPositionMF_01844206) - 1) AS ?thisPositionOn26) .
BIND(?this AS ?pfs1t219) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfsb23) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfse24) .
FILTER ((BOUND(?thisPositionOn25) && BOUND(?thisPositionOn26))) .
BIND(URI(CONCAT(STR(?this), '#MF_01844a22')) AS ?annotation22) .
BIND(?this AS ?pfs21) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch225 faldo:location ?templateMotifSequenceMatchRegionP13738226 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP13738228 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP13738MF_01844221 .
?templateMotifSequenceMatchRegionP13738226 faldo:begin ?templateMotifSequenceMatchBeginP13738227 .
?templateMotifSequenceMatchBeginP13738227 faldo:position ?templateMotifSequenceMatchBeginPositionP13738222 ;
faldo:reference isoform:P13738-1 .
?templateMotifSequenceProfileAlignmentOperationP13738228 edam:has_input signature:MF_01844 ;
rdf:type edam:operation_0300 .
?targetMotifMatch229 faldo:location ?targetMotifMatchRegionMatch230 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01844232 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP13738MF_01844223 .
?targetMotifMatchRegionMatch230 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01844231 .
?targetMotifMatchRegionMatchBeginMF_01844231 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01844224 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01844232 edam:has_input signature:MF_01844 ;
rdf:type edam:operation_0300 .
VALUES ?supertaxon220 {taxon:620 taxon:561}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon220 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13738MF_01844221, 1, (STRLEN(?templateMotifCigarP13738MF_01844221) - STRLEN(REPLACE(?templateMotifCigarP13738MF_01844221, CONCAT('^(?:-*[^-]){', STR(((59 - ?templateMotifSequenceMatchBeginPositionP13738222) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1233) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13738MF_01844223, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844223) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844223, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1233), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13738MF_01844223, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844223) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844223, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1233), '}'), '')))), '[^-]', ''))) AS ?step2234) .
BIND(((?step2234 + ?targetMotifMatchRegionMatchBeginPositionMF_01844224) - 1) AS ?thisPositionOn31) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13738MF_01844221, 1, (STRLEN(?templateMotifCigarP13738MF_01844221) - STRLEN(REPLACE(?templateMotifCigarP13738MF_01844221, CONCAT('^(?:-*[^-]){', STR(((80 - ?templateMotifSequenceMatchBeginPositionP13738222) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1235) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13738MF_01844223, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844223) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844223, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1235), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13738MF_01844223, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844223) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844223, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1235), '}'), '')))), '[^-]', ''))) AS ?step2236) .
BIND(((?step2236 + ?targetMotifMatchRegionMatchBeginPositionMF_01844224) - 1) AS ?thisPositionOn32) .
BIND(?this AS ?pfs1t237) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb29) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse30) .
FILTER ((BOUND(?thisPositionOn31) && BOUND(?thisPositionOn32))) .
BIND(URI(CONCAT(STR(?this), '#MF_01844a28')) AS ?annotation28) .
BIND(?this AS ?pfs27) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch243 faldo:location ?templateMotifSequenceMatchRegionP13738244 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP13738246 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP13738MF_01844239 .
?templateMotifSequenceMatchRegionP13738244 faldo:begin ?templateMotifSequenceMatchBeginP13738245 .
?templateMotifSequenceMatchBeginP13738245 faldo:position ?templateMotifSequenceMatchBeginPositionP13738240 ;
faldo:reference isoform:P13738-1 .
?templateMotifSequenceProfileAlignmentOperationP13738246 edam:has_input signature:MF_01844 ;
rdf:type edam:operation_0300 .
?targetMotifMatch247 faldo:location ?targetMotifMatchRegionMatch248 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01844250 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP13738MF_01844241 .
?targetMotifMatchRegionMatch248 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01844249 .
?targetMotifMatchRegionMatchBeginMF_01844249 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01844242 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01844250 edam:has_input signature:MF_01844 ;
rdf:type edam:operation_0300 .
VALUES ?supertaxon238 {taxon:620 taxon:561}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon238 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13738MF_01844239, 1, (STRLEN(?templateMotifCigarP13738MF_01844239) - STRLEN(REPLACE(?templateMotifCigarP13738MF_01844239, CONCAT('^(?:-*[^-]){', STR(((81 - ?templateMotifSequenceMatchBeginPositionP13738240) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1251) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13738MF_01844241, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844241) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844241, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1251), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13738MF_01844241, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844241) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844241, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1251), '}'), '')))), '[^-]', ''))) AS ?step2252) .
BIND(((?step2252 + ?targetMotifMatchRegionMatchBeginPositionMF_01844242) - 1) AS ?thisPositionOn37) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13738MF_01844239, 1, (STRLEN(?templateMotifCigarP13738MF_01844239) - STRLEN(REPLACE(?templateMotifCigarP13738MF_01844239, CONCAT('^(?:-*[^-]){', STR(((96 - ?templateMotifSequenceMatchBeginPositionP13738240) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1253) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13738MF_01844241, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844241) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844241, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1253), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13738MF_01844241, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844241) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844241, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1253), '}'), '')))), '[^-]', ''))) AS ?step2254) .
BIND(((?step2254 + ?targetMotifMatchRegionMatchBeginPositionMF_01844242) - 1) AS ?thisPositionOn38) .
BIND(?this AS ?pfs1t255) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfsb35) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfse36) .
FILTER ((BOUND(?thisPositionOn37) && BOUND(?thisPositionOn38))) .
BIND(URI(CONCAT(STR(?this), '#MF_01844a34')) AS ?annotation34) .
BIND(?this AS ?pfs33) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch261 faldo:location ?templateMotifSequenceMatchRegionP13738262 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP13738264 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP13738MF_01844257 .
?templateMotifSequenceMatchRegionP13738262 faldo:begin ?templateMotifSequenceMatchBeginP13738263 .
?templateMotifSequenceMatchBeginP13738263 faldo:position ?templateMotifSequenceMatchBeginPositionP13738258 ;
faldo:reference isoform:P13738-1 .
?templateMotifSequenceProfileAlignmentOperationP13738264 edam:has_input signature:MF_01844 ;
rdf:type edam:operation_0300 .
?targetMotifMatch265 faldo:location ?targetMotifMatchRegionMatch266 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01844268 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP13738MF_01844259 .
?targetMotifMatchRegionMatch266 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01844267 .
?targetMotifMatchRegionMatchBeginMF_01844267 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01844260 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01844268 edam:has_input signature:MF_01844 ;
rdf:type edam:operation_0300 .
VALUES ?supertaxon256 {taxon:620 taxon:561}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon256 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13738MF_01844257, 1, (STRLEN(?templateMotifCigarP13738MF_01844257) - STRLEN(REPLACE(?templateMotifCigarP13738MF_01844257, CONCAT('^(?:-*[^-]){', STR(((97 - ?templateMotifSequenceMatchBeginPositionP13738258) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1269) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13738MF_01844259, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844259) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844259, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1269), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13738MF_01844259, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844259) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844259, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1269), '}'), '')))), '[^-]', ''))) AS ?step2270) .
BIND(((?step2270 + ?targetMotifMatchRegionMatchBeginPositionMF_01844260) - 1) AS ?thisPositionOn43) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13738MF_01844257, 1, (STRLEN(?templateMotifCigarP13738MF_01844257) - STRLEN(REPLACE(?templateMotifCigarP13738MF_01844257, CONCAT('^(?:-*[^-]){', STR(((116 - ?templateMotifSequenceMatchBeginPositionP13738258) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1271) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13738MF_01844259, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844259) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844259, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1271), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13738MF_01844259, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844259) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844259, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1271), '}'), '')))), '[^-]', ''))) AS ?step2272) .
BIND(((?step2272 + ?targetMotifMatchRegionMatchBeginPositionMF_01844260) - 1) AS ?thisPositionOn44) .
BIND(?this AS ?pfs1t273) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfsb41) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfse42) .
FILTER ((BOUND(?thisPositionOn43) && BOUND(?thisPositionOn44))) .
BIND(URI(CONCAT(STR(?this), '#MF_01844a40')) AS ?annotation40) .
BIND(?this AS ?pfs39) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch279 faldo:location ?templateMotifSequenceMatchRegionP13738280 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP13738282 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP13738MF_01844275 .
?templateMotifSequenceMatchRegionP13738280 faldo:begin ?templateMotifSequenceMatchBeginP13738281 .
?templateMotifSequenceMatchBeginP13738281 faldo:position ?templateMotifSequenceMatchBeginPositionP13738276 ;
faldo:reference isoform:P13738-1 .
?templateMotifSequenceProfileAlignmentOperationP13738282 edam:has_input signature:MF_01844 ;
rdf:type edam:operation_0300 .
?targetMotifMatch283 faldo:location ?targetMotifMatchRegionMatch284 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01844286 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP13738MF_01844277 .
?targetMotifMatchRegionMatch284 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01844285 .
?targetMotifMatchRegionMatchBeginMF_01844285 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01844278 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01844286 edam:has_input signature:MF_01844 ;
rdf:type edam:operation_0300 .
VALUES ?supertaxon274 {taxon:620 taxon:561}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon274 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13738MF_01844275, 1, (STRLEN(?templateMotifCigarP13738MF_01844275) - STRLEN(REPLACE(?templateMotifCigarP13738MF_01844275, CONCAT('^(?:-*[^-]){', STR(((117 - ?templateMotifSequenceMatchBeginPositionP13738276) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1287) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13738MF_01844277, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844277) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844277, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1287), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13738MF_01844277, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844277) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844277, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1287), '}'), '')))), '[^-]', ''))) AS ?step2288) .
BIND(((?step2288 + ?targetMotifMatchRegionMatchBeginPositionMF_01844278) - 1) AS ?thisPositionOn49) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13738MF_01844275, 1, (STRLEN(?templateMotifCigarP13738MF_01844275) - STRLEN(REPLACE(?templateMotifCigarP13738MF_01844275, CONCAT('^(?:-*[^-]){', STR(((122 - ?templateMotifSequenceMatchBeginPositionP13738276) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1289) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13738MF_01844277, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844277) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844277, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1289), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13738MF_01844277, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844277) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844277, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1289), '}'), '')))), '[^-]', ''))) AS ?step2290) .
BIND(((?step2290 + ?targetMotifMatchRegionMatchBeginPositionMF_01844278) - 1) AS ?thisPositionOn50) .
BIND(?this AS ?pfs1t291) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfsb47) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfse48) .
FILTER ((BOUND(?thisPositionOn49) && BOUND(?thisPositionOn50))) .
BIND(URI(CONCAT(STR(?this), '#MF_01844a46')) AS ?annotation46) .
BIND(?this AS ?pfs45) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch297 faldo:location ?templateMotifSequenceMatchRegionP13738298 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP13738300 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP13738MF_01844293 .
?templateMotifSequenceMatchRegionP13738298 faldo:begin ?templateMotifSequenceMatchBeginP13738299 .
?templateMotifSequenceMatchBeginP13738299 faldo:position ?templateMotifSequenceMatchBeginPositionP13738294 ;
faldo:reference isoform:P13738-1 .
?templateMotifSequenceProfileAlignmentOperationP13738300 edam:has_input signature:MF_01844 ;
rdf:type edam:operation_0300 .
?targetMotifMatch301 faldo:location ?targetMotifMatchRegionMatch302 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01844304 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP13738MF_01844295 .
?targetMotifMatchRegionMatch302 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01844303 .
?targetMotifMatchRegionMatchBeginMF_01844303 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01844296 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01844304 edam:has_input signature:MF_01844 ;
rdf:type edam:operation_0300 .
VALUES ?supertaxon292 {taxon:620 taxon:561}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon292 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13738MF_01844293, 1, (STRLEN(?templateMotifCigarP13738MF_01844293) - STRLEN(REPLACE(?templateMotifCigarP13738MF_01844293, CONCAT('^(?:-*[^-]){', STR(((123 - ?templateMotifSequenceMatchBeginPositionP13738294) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1305) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13738MF_01844295, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844295) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844295, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1305), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13738MF_01844295, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844295) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844295, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1305), '}'), '')))), '[^-]', ''))) AS ?step2306) .
BIND(((?step2306 + ?targetMotifMatchRegionMatchBeginPositionMF_01844296) - 1) AS ?thisPositionOn55) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13738MF_01844293, 1, (STRLEN(?templateMotifCigarP13738MF_01844293) - STRLEN(REPLACE(?templateMotifCigarP13738MF_01844293, CONCAT('^(?:-*[^-]){', STR(((130 - ?templateMotifSequenceMatchBeginPositionP13738294) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1307) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13738MF_01844295, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844295) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844295, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1307), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13738MF_01844295, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844295) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844295, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1307), '}'), '')))), '[^-]', ''))) AS ?step2308) .
BIND(((?step2308 + ?targetMotifMatchRegionMatchBeginPositionMF_01844296) - 1) AS ?thisPositionOn56) .
BIND(?this AS ?pfs1t309) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfsb53) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfse54) .
FILTER ((BOUND(?thisPositionOn55) && BOUND(?thisPositionOn56))) .
BIND(URI(CONCAT(STR(?this), '#MF_01844a52')) AS ?annotation52) .
BIND(?this AS ?pfs51) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch315 faldo:location ?templateMotifSequenceMatchRegionP13738316 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP13738318 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP13738MF_01844311 .
?templateMotifSequenceMatchRegionP13738316 faldo:begin ?templateMotifSequenceMatchBeginP13738317 .
?templateMotifSequenceMatchBeginP13738317 faldo:position ?templateMotifSequenceMatchBeginPositionP13738312 ;
faldo:reference isoform:P13738-1 .
?templateMotifSequenceProfileAlignmentOperationP13738318 edam:has_input signature:MF_01844 ;
rdf:type edam:operation_0300 .
?targetMotifMatch319 faldo:location ?targetMotifMatchRegionMatch320 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01844322 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP13738MF_01844313 .
?targetMotifMatchRegionMatch320 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01844321 .
?targetMotifMatchRegionMatchBeginMF_01844321 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01844314 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01844322 edam:has_input signature:MF_01844 ;
rdf:type edam:operation_0300 .
VALUES ?supertaxon310 {taxon:620 taxon:561}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon310 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13738MF_01844311, 1, (STRLEN(?templateMotifCigarP13738MF_01844311) - STRLEN(REPLACE(?templateMotifCigarP13738MF_01844311, CONCAT('^(?:-*[^-]){', STR(((131 - ?templateMotifSequenceMatchBeginPositionP13738312) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1323) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13738MF_01844313, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844313) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844313, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1323), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13738MF_01844313, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844313) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844313, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1323), '}'), '')))), '[^-]', ''))) AS ?step2324) .
BIND(((?step2324 + ?targetMotifMatchRegionMatchBeginPositionMF_01844314) - 1) AS ?thisPositionOn61) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13738MF_01844311, 1, (STRLEN(?templateMotifCigarP13738MF_01844311) - STRLEN(REPLACE(?templateMotifCigarP13738MF_01844311, CONCAT('^(?:-*[^-]){', STR(((154 - ?templateMotifSequenceMatchBeginPositionP13738312) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1325) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13738MF_01844313, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844313) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844313, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1325), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13738MF_01844313, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844313) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844313, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1325), '}'), '')))), '[^-]', ''))) AS ?step2326) .
BIND(((?step2326 + ?targetMotifMatchRegionMatchBeginPositionMF_01844314) - 1) AS ?thisPositionOn62) .
BIND(?this AS ?pfs1t327) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfsb59) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfse60) .
FILTER ((BOUND(?thisPositionOn61) && BOUND(?thisPositionOn62))) .
BIND(URI(CONCAT(STR(?this), '#MF_01844a58')) AS ?annotation58) .
BIND(?this AS ?pfs57) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch333 faldo:location ?templateMotifSequenceMatchRegionP13738334 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP13738336 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP13738MF_01844329 .
?templateMotifSequenceMatchRegionP13738334 faldo:begin ?templateMotifSequenceMatchBeginP13738335 .
?templateMotifSequenceMatchBeginP13738335 faldo:position ?templateMotifSequenceMatchBeginPositionP13738330 ;
faldo:reference isoform:P13738-1 .
?templateMotifSequenceProfileAlignmentOperationP13738336 edam:has_input signature:MF_01844 ;
rdf:type edam:operation_0300 .
?targetMotifMatch337 faldo:location ?targetMotifMatchRegionMatch338 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01844340 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP13738MF_01844331 .
?targetMotifMatchRegionMatch338 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01844339 .
?targetMotifMatchRegionMatchBeginMF_01844339 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01844332 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01844340 edam:has_input signature:MF_01844 ;
rdf:type edam:operation_0300 .
VALUES ?supertaxon328 {taxon:620 taxon:561}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon328 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13738MF_01844329, 1, (STRLEN(?templateMotifCigarP13738MF_01844329) - STRLEN(REPLACE(?templateMotifCigarP13738MF_01844329, CONCAT('^(?:-*[^-]){', STR(((155 - ?templateMotifSequenceMatchBeginPositionP13738330) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1341) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13738MF_01844331, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844331) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844331, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1341), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13738MF_01844331, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844331) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844331, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1341), '}'), '')))), '[^-]', ''))) AS ?step2342) .
BIND(((?step2342 + ?targetMotifMatchRegionMatchBeginPositionMF_01844332) - 1) AS ?thisPositionOn67) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13738MF_01844329, 1, (STRLEN(?templateMotifCigarP13738MF_01844329) - STRLEN(REPLACE(?templateMotifCigarP13738MF_01844329, CONCAT('^(?:-*[^-]){', STR(((176 - ?templateMotifSequenceMatchBeginPositionP13738330) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1343) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13738MF_01844331, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844331) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844331, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1343), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13738MF_01844331, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844331) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844331, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1343), '}'), '')))), '[^-]', ''))) AS ?step2344) .
BIND(((?step2344 + ?targetMotifMatchRegionMatchBeginPositionMF_01844332) - 1) AS ?thisPositionOn68) .
BIND(?this AS ?pfs1t345) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfsb65) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn68))) AS ?pfse66) .
FILTER ((BOUND(?thisPositionOn67) && BOUND(?thisPositionOn68))) .
BIND(URI(CONCAT(STR(?this), '#MF_01844a64')) AS ?annotation64) .
BIND(?this AS ?pfs63) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch351 faldo:location ?templateMotifSequenceMatchRegionP13738352 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP13738354 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP13738MF_01844347 .
?templateMotifSequenceMatchRegionP13738352 faldo:begin ?templateMotifSequenceMatchBeginP13738353 .
?templateMotifSequenceMatchBeginP13738353 faldo:position ?templateMotifSequenceMatchBeginPositionP13738348 ;
faldo:reference isoform:P13738-1 .
?templateMotifSequenceProfileAlignmentOperationP13738354 edam:has_input signature:MF_01844 ;
rdf:type edam:operation_0300 .
?targetMotifMatch355 faldo:location ?targetMotifMatchRegionMatch356 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01844358 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP13738MF_01844349 .
?targetMotifMatchRegionMatch356 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01844357 .
?targetMotifMatchRegionMatchBeginMF_01844357 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01844350 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01844358 edam:has_input signature:MF_01844 ;
rdf:type edam:operation_0300 .
VALUES ?supertaxon346 {taxon:620 taxon:561}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon346 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13738MF_01844347, 1, (STRLEN(?templateMotifCigarP13738MF_01844347) - STRLEN(REPLACE(?templateMotifCigarP13738MF_01844347, CONCAT('^(?:-*[^-]){', STR(((177 - ?templateMotifSequenceMatchBeginPositionP13738348) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1359) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13738MF_01844349, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844349) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844349, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1359), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13738MF_01844349, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844349) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844349, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1359), '}'), '')))), '[^-]', ''))) AS ?step2360) .
BIND(((?step2360 + ?targetMotifMatchRegionMatchBeginPositionMF_01844350) - 1) AS ?thisPositionOn73) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13738MF_01844347, 1, (STRLEN(?templateMotifCigarP13738MF_01844347) - STRLEN(REPLACE(?templateMotifCigarP13738MF_01844347, CONCAT('^(?:-*[^-]){', STR(((180 - ?templateMotifSequenceMatchBeginPositionP13738348) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1361) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13738MF_01844349, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844349) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844349, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1361), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13738MF_01844349, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844349) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844349, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1361), '}'), '')))), '[^-]', ''))) AS ?step2362) .
BIND(((?step2362 + ?targetMotifMatchRegionMatchBeginPositionMF_01844350) - 1) AS ?thisPositionOn74) .
BIND(?this AS ?pfs1t363) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfsb71) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn74))) AS ?pfse72) .
FILTER ((BOUND(?thisPositionOn73) && BOUND(?thisPositionOn74))) .
BIND(URI(CONCAT(STR(?this), '#MF_01844a70')) AS ?annotation70) .
BIND(?this AS ?pfs69) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch369 faldo:location ?templateMotifSequenceMatchRegionP13738370 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP13738372 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP13738MF_01844365 .
?templateMotifSequenceMatchRegionP13738370 faldo:begin ?templateMotifSequenceMatchBeginP13738371 .
?templateMotifSequenceMatchBeginP13738371 faldo:position ?templateMotifSequenceMatchBeginPositionP13738366 ;
faldo:reference isoform:P13738-1 .
?templateMotifSequenceProfileAlignmentOperationP13738372 edam:has_input signature:MF_01844 ;
rdf:type edam:operation_0300 .
?targetMotifMatch373 faldo:location ?targetMotifMatchRegionMatch374 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01844376 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP13738MF_01844367 .
?targetMotifMatchRegionMatch374 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01844375 .
?targetMotifMatchRegionMatchBeginMF_01844375 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01844368 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01844376 edam:has_input signature:MF_01844 ;
rdf:type edam:operation_0300 .
VALUES ?supertaxon364 {taxon:620 taxon:561}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon364 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13738MF_01844365, 1, (STRLEN(?templateMotifCigarP13738MF_01844365) - STRLEN(REPLACE(?templateMotifCigarP13738MF_01844365, CONCAT('^(?:-*[^-]){', STR(((181 - ?templateMotifSequenceMatchBeginPositionP13738366) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1377) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13738MF_01844367, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844367) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844367, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1377), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13738MF_01844367, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844367) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844367, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1377), '}'), '')))), '[^-]', ''))) AS ?step2378) .
BIND(((?step2378 + ?targetMotifMatchRegionMatchBeginPositionMF_01844368) - 1) AS ?thisPositionOn79) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13738MF_01844365, 1, (STRLEN(?templateMotifCigarP13738MF_01844365) - STRLEN(REPLACE(?templateMotifCigarP13738MF_01844365, CONCAT('^(?:-*[^-]){', STR(((200 - ?templateMotifSequenceMatchBeginPositionP13738366) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1379) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13738MF_01844367, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844367) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844367, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1379), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13738MF_01844367, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844367) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844367, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1379), '}'), '')))), '[^-]', ''))) AS ?step2380) .
BIND(((?step2380 + ?targetMotifMatchRegionMatchBeginPositionMF_01844368) - 1) AS ?thisPositionOn80) .
BIND(?this AS ?pfs1t381) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn79))) AS ?pfsb77) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn80))) AS ?pfse78) .
FILTER ((BOUND(?thisPositionOn79) && BOUND(?thisPositionOn80))) .
BIND(URI(CONCAT(STR(?this), '#MF_01844a76')) AS ?annotation76) .
BIND(?this AS ?pfs75) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch387 faldo:location ?templateMotifSequenceMatchRegionP13738388 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP13738390 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP13738MF_01844383 .
?templateMotifSequenceMatchRegionP13738388 faldo:begin ?templateMotifSequenceMatchBeginP13738389 .
?templateMotifSequenceMatchBeginP13738389 faldo:position ?templateMotifSequenceMatchBeginPositionP13738384 ;
faldo:reference isoform:P13738-1 .
?templateMotifSequenceProfileAlignmentOperationP13738390 edam:has_input signature:MF_01844 ;
rdf:type edam:operation_0300 .
?targetMotifMatch391 faldo:location ?targetMotifMatchRegionMatch392 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01844394 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP13738MF_01844385 .
?targetMotifMatchRegionMatch392 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01844393 .
?targetMotifMatchRegionMatchBeginMF_01844393 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01844386 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01844394 edam:has_input signature:MF_01844 ;
rdf:type edam:operation_0300 .
VALUES ?supertaxon382 {taxon:620 taxon:561}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon382 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13738MF_01844383, 1, (STRLEN(?templateMotifCigarP13738MF_01844383) - STRLEN(REPLACE(?templateMotifCigarP13738MF_01844383, CONCAT('^(?:-*[^-]){', STR(((201 - ?templateMotifSequenceMatchBeginPositionP13738384) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1395) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13738MF_01844385, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844385) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844385, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1395), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13738MF_01844385, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844385) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844385, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1395), '}'), '')))), '[^-]', ''))) AS ?step2396) .
BIND(((?step2396 + ?targetMotifMatchRegionMatchBeginPositionMF_01844386) - 1) AS ?thisPositionOn85) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13738MF_01844383, 1, (STRLEN(?templateMotifCigarP13738MF_01844383) - STRLEN(REPLACE(?templateMotifCigarP13738MF_01844383, CONCAT('^(?:-*[^-]){', STR(((204 - ?templateMotifSequenceMatchBeginPositionP13738384) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1397) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13738MF_01844385, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844385) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844385, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1397), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13738MF_01844385, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844385) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844385, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1397), '}'), '')))), '[^-]', ''))) AS ?step2398) .
BIND(((?step2398 + ?targetMotifMatchRegionMatchBeginPositionMF_01844386) - 1) AS ?thisPositionOn86) .
BIND(?this AS ?pfs1t399) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn85))) AS ?pfsb83) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn86))) AS ?pfse84) .
FILTER ((BOUND(?thisPositionOn85) && BOUND(?thisPositionOn86))) .
BIND(URI(CONCAT(STR(?this), '#MF_01844a82')) AS ?annotation82) .
BIND(?this AS ?pfs81) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch405 faldo:location ?templateMotifSequenceMatchRegionP13738406 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP13738408 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP13738MF_01844401 .
?templateMotifSequenceMatchRegionP13738406 faldo:begin ?templateMotifSequenceMatchBeginP13738407 .
?templateMotifSequenceMatchBeginP13738407 faldo:position ?templateMotifSequenceMatchBeginPositionP13738402 ;
faldo:reference isoform:P13738-1 .
?templateMotifSequenceProfileAlignmentOperationP13738408 edam:has_input signature:MF_01844 ;
rdf:type edam:operation_0300 .
?targetMotifMatch409 faldo:location ?targetMotifMatchRegionMatch410 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01844412 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP13738MF_01844403 .
?targetMotifMatchRegionMatch410 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01844411 .
?targetMotifMatchRegionMatchBeginMF_01844411 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01844404 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01844412 edam:has_input signature:MF_01844 ;
rdf:type edam:operation_0300 .
VALUES ?supertaxon400 {taxon:620 taxon:561}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon400 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13738MF_01844401, 1, (STRLEN(?templateMotifCigarP13738MF_01844401) - STRLEN(REPLACE(?templateMotifCigarP13738MF_01844401, CONCAT('^(?:-*[^-]){', STR(((205 - ?templateMotifSequenceMatchBeginPositionP13738402) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1413) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13738MF_01844403, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844403) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844403, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1413), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13738MF_01844403, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844403) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844403, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1413), '}'), '')))), '[^-]', ''))) AS ?step2414) .
BIND(((?step2414 + ?targetMotifMatchRegionMatchBeginPositionMF_01844404) - 1) AS ?thisPositionOn91) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13738MF_01844401, 1, (STRLEN(?templateMotifCigarP13738MF_01844401) - STRLEN(REPLACE(?templateMotifCigarP13738MF_01844401, CONCAT('^(?:-*[^-]){', STR(((222 - ?templateMotifSequenceMatchBeginPositionP13738402) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1415) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13738MF_01844403, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844403) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844403, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1415), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13738MF_01844403, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844403) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844403, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1415), '}'), '')))), '[^-]', ''))) AS ?step2416) .
BIND(((?step2416 + ?targetMotifMatchRegionMatchBeginPositionMF_01844404) - 1) AS ?thisPositionOn92) .
BIND(?this AS ?pfs1t417) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn91))) AS ?pfsb89) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn92))) AS ?pfse90) .
FILTER ((BOUND(?thisPositionOn91) && BOUND(?thisPositionOn92))) .
BIND(URI(CONCAT(STR(?this), '#MF_01844a88')) AS ?annotation88) .
BIND(?this AS ?pfs87) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch423 faldo:location ?templateMotifSequenceMatchRegionP13738424 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP13738426 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP13738MF_01844419 .
?templateMotifSequenceMatchRegionP13738424 faldo:begin ?templateMotifSequenceMatchBeginP13738425 .
?templateMotifSequenceMatchBeginP13738425 faldo:position ?templateMotifSequenceMatchBeginPositionP13738420 ;
faldo:reference isoform:P13738-1 .
?templateMotifSequenceProfileAlignmentOperationP13738426 edam:has_input signature:MF_01844 ;
rdf:type edam:operation_0300 .
?targetMotifMatch427 faldo:location ?targetMotifMatchRegionMatch428 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01844430 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP13738MF_01844421 .
?targetMotifMatchRegionMatch428 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01844429 .
?targetMotifMatchRegionMatchBeginMF_01844429 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01844422 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01844430 edam:has_input signature:MF_01844 ;
rdf:type edam:operation_0300 .
VALUES ?supertaxon418 {taxon:620 taxon:561}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon418 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13738MF_01844419, 1, (STRLEN(?templateMotifCigarP13738MF_01844419) - STRLEN(REPLACE(?templateMotifCigarP13738MF_01844419, CONCAT('^(?:-*[^-]){', STR(((223 - ?templateMotifSequenceMatchBeginPositionP13738420) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1431) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13738MF_01844421, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844421) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844421, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1431), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13738MF_01844421, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844421) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844421, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1431), '}'), '')))), '[^-]', ''))) AS ?step2432) .
BIND(((?step2432 + ?targetMotifMatchRegionMatchBeginPositionMF_01844422) - 1) AS ?thisPositionOn97) .
BIND(?thisPositionOn97 AS ?thisPositionOn98) .
BIND(?this AS ?pfs1t433) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn97))) AS ?pfsb95) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn98))) AS ?pfse96) .
FILTER (BOUND(?thisPositionOn97)) .
BIND(URI(CONCAT(STR(?this), '#MF_01844a94')) AS ?annotation94) .
BIND(?this AS ?pfs93) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch439 faldo:location ?templateMotifSequenceMatchRegionP13738440 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP13738442 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP13738MF_01844435 .
?templateMotifSequenceMatchRegionP13738440 faldo:begin ?templateMotifSequenceMatchBeginP13738441 .
?templateMotifSequenceMatchBeginP13738441 faldo:position ?templateMotifSequenceMatchBeginPositionP13738436 ;
faldo:reference isoform:P13738-1 .
?templateMotifSequenceProfileAlignmentOperationP13738442 edam:has_input signature:MF_01844 ;
rdf:type edam:operation_0300 .
?targetMotifMatch443 faldo:location ?targetMotifMatchRegionMatch444 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01844446 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP13738MF_01844437 .
?targetMotifMatchRegionMatch444 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01844445 .
?targetMotifMatchRegionMatchBeginMF_01844445 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01844438 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01844446 edam:has_input signature:MF_01844 ;
rdf:type edam:operation_0300 .
VALUES ?supertaxon434 {taxon:620 taxon:561}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon434 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13738MF_01844435, 1, (STRLEN(?templateMotifCigarP13738MF_01844435) - STRLEN(REPLACE(?templateMotifCigarP13738MF_01844435, CONCAT('^(?:-*[^-]){', STR(((224 - ?templateMotifSequenceMatchBeginPositionP13738436) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1447) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13738MF_01844437, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844437) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844437, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1447), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13738MF_01844437, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844437) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844437, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1447), '}'), '')))), '[^-]', ''))) AS ?step2448) .
BIND(((?step2448 + ?targetMotifMatchRegionMatchBeginPositionMF_01844438) - 1) AS ?thisPositionOn103) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13738MF_01844435, 1, (STRLEN(?templateMotifCigarP13738MF_01844435) - STRLEN(REPLACE(?templateMotifCigarP13738MF_01844435, CONCAT('^(?:-*[^-]){', STR(((236 - ?templateMotifSequenceMatchBeginPositionP13738436) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1449) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13738MF_01844437, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844437) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844437, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1449), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13738MF_01844437, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844437) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844437, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1449), '}'), '')))), '[^-]', ''))) AS ?step2450) .
BIND(((?step2450 + ?targetMotifMatchRegionMatchBeginPositionMF_01844438) - 1) AS ?thisPositionOn104) .
BIND(?this AS ?pfs1t451) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn103))) AS ?pfsb101) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn104))) AS ?pfse102) .
FILTER ((BOUND(?thisPositionOn103) && BOUND(?thisPositionOn104))) .
BIND(URI(CONCAT(STR(?this), '#MF_01844a100')) AS ?annotation100) .
BIND(?this AS ?pfs99) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch457 faldo:location ?templateMotifSequenceMatchRegionP13738458 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP13738460 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP13738MF_01844453 .
?templateMotifSequenceMatchRegionP13738458 faldo:begin ?templateMotifSequenceMatchBeginP13738459 .
?templateMotifSequenceMatchBeginP13738459 faldo:position ?templateMotifSequenceMatchBeginPositionP13738454 ;
faldo:reference isoform:P13738-1 .
?templateMotifSequenceProfileAlignmentOperationP13738460 edam:has_input signature:MF_01844 ;
rdf:type edam:operation_0300 .
?targetMotifMatch461 faldo:location ?targetMotifMatchRegionMatch462 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01844464 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP13738MF_01844455 .
?targetMotifMatchRegionMatch462 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01844463 .
?targetMotifMatchRegionMatchBeginMF_01844463 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01844456 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01844464 edam:has_input signature:MF_01844 ;
rdf:type edam:operation_0300 .
VALUES ?supertaxon452 {taxon:620 taxon:561}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon452 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13738MF_01844453, 1, (STRLEN(?templateMotifCigarP13738MF_01844453) - STRLEN(REPLACE(?templateMotifCigarP13738MF_01844453, CONCAT('^(?:-*[^-]){', STR(((237 - ?templateMotifSequenceMatchBeginPositionP13738454) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1465) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13738MF_01844455, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844455) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844455, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1465), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13738MF_01844455, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844455) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844455, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1465), '}'), '')))), '[^-]', ''))) AS ?step2466) .
BIND(((?step2466 + ?targetMotifMatchRegionMatchBeginPositionMF_01844456) - 1) AS ?thisPositionOn109) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13738MF_01844453, 1, (STRLEN(?templateMotifCigarP13738MF_01844453) - STRLEN(REPLACE(?templateMotifCigarP13738MF_01844453, CONCAT('^(?:-*[^-]){', STR(((253 - ?templateMotifSequenceMatchBeginPositionP13738454) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1467) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13738MF_01844455, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844455) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844455, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1467), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13738MF_01844455, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844455) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844455, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1467), '}'), '')))), '[^-]', ''))) AS ?step2468) .
BIND(((?step2468 + ?targetMotifMatchRegionMatchBeginPositionMF_01844456) - 1) AS ?thisPositionOn110) .
BIND(?this AS ?pfs1t469) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn109))) AS ?pfsb107) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn110))) AS ?pfse108) .
FILTER ((BOUND(?thisPositionOn109) && BOUND(?thisPositionOn110))) .
BIND(URI(CONCAT(STR(?this), '#MF_01844a106')) AS ?annotation106) .
BIND(?this AS ?pfs105) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch475 faldo:location ?templateMotifSequenceMatchRegionP13738476 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP13738478 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP13738MF_01844471 .
?templateMotifSequenceMatchRegionP13738476 faldo:begin ?templateMotifSequenceMatchBeginP13738477 .
?templateMotifSequenceMatchBeginP13738477 faldo:position ?templateMotifSequenceMatchBeginPositionP13738472 ;
faldo:reference isoform:P13738-1 .
?templateMotifSequenceProfileAlignmentOperationP13738478 edam:has_input signature:MF_01844 ;
rdf:type edam:operation_0300 .
?targetMotifMatch479 faldo:location ?targetMotifMatchRegionMatch480 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01844482 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP13738MF_01844473 .
?targetMotifMatchRegionMatch480 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01844481 .
?targetMotifMatchRegionMatchBeginMF_01844481 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01844474 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01844482 edam:has_input signature:MF_01844 ;
rdf:type edam:operation_0300 .
VALUES ?supertaxon470 {taxon:620 taxon:561}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon470 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13738MF_01844471, 1, (STRLEN(?templateMotifCigarP13738MF_01844471) - STRLEN(REPLACE(?templateMotifCigarP13738MF_01844471, CONCAT('^(?:-*[^-]){', STR(((254 - ?templateMotifSequenceMatchBeginPositionP13738472) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1483) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13738MF_01844473, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844473) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844473, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1483), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13738MF_01844473, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844473) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844473, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1483), '}'), '')))), '[^-]', ''))) AS ?step2484) .
BIND(((?step2484 + ?targetMotifMatchRegionMatchBeginPositionMF_01844474) - 1) AS ?thisPositionOn115) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13738MF_01844471, 1, (STRLEN(?templateMotifCigarP13738MF_01844471) - STRLEN(REPLACE(?templateMotifCigarP13738MF_01844471, CONCAT('^(?:-*[^-]){', STR(((272 - ?templateMotifSequenceMatchBeginPositionP13738472) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1485) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13738MF_01844473, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844473) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844473, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1485), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13738MF_01844473, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844473) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844473, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1485), '}'), '')))), '[^-]', ''))) AS ?step2486) .
BIND(((?step2486 + ?targetMotifMatchRegionMatchBeginPositionMF_01844474) - 1) AS ?thisPositionOn116) .
BIND(?this AS ?pfs1t487) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn115))) AS ?pfsb113) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn116))) AS ?pfse114) .
FILTER ((BOUND(?thisPositionOn115) && BOUND(?thisPositionOn116))) .
BIND(URI(CONCAT(STR(?this), '#MF_01844a112')) AS ?annotation112) .
BIND(?this AS ?pfs111) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch493 faldo:location ?templateMotifSequenceMatchRegionP13738494 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP13738496 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP13738MF_01844489 .
?templateMotifSequenceMatchRegionP13738494 faldo:begin ?templateMotifSequenceMatchBeginP13738495 .
?templateMotifSequenceMatchBeginP13738495 faldo:position ?templateMotifSequenceMatchBeginPositionP13738490 ;
faldo:reference isoform:P13738-1 .
?templateMotifSequenceProfileAlignmentOperationP13738496 edam:has_input signature:MF_01844 ;
rdf:type edam:operation_0300 .
?targetMotifMatch497 faldo:location ?targetMotifMatchRegionMatch498 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01844500 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP13738MF_01844491 .
?targetMotifMatchRegionMatch498 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01844499 .
?targetMotifMatchRegionMatchBeginMF_01844499 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01844492 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01844500 edam:has_input signature:MF_01844 ;
rdf:type edam:operation_0300 .
VALUES ?supertaxon488 {taxon:620 taxon:561}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon488 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13738MF_01844489, 1, (STRLEN(?templateMotifCigarP13738MF_01844489) - STRLEN(REPLACE(?templateMotifCigarP13738MF_01844489, CONCAT('^(?:-*[^-]){', STR(((273 - ?templateMotifSequenceMatchBeginPositionP13738490) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1501) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13738MF_01844491, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844491) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844491, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1501), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13738MF_01844491, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844491) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844491, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1501), '}'), '')))), '[^-]', ''))) AS ?step2502) .
BIND(((?step2502 + ?targetMotifMatchRegionMatchBeginPositionMF_01844492) - 1) AS ?thisPositionOn121) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13738MF_01844489, 1, (STRLEN(?templateMotifCigarP13738MF_01844489) - STRLEN(REPLACE(?templateMotifCigarP13738MF_01844489, CONCAT('^(?:-*[^-]){', STR(((286 - ?templateMotifSequenceMatchBeginPositionP13738490) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1503) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13738MF_01844491, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844491) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844491, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1503), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13738MF_01844491, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844491) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844491, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1503), '}'), '')))), '[^-]', ''))) AS ?step2504) .
BIND(((?step2504 + ?targetMotifMatchRegionMatchBeginPositionMF_01844492) - 1) AS ?thisPositionOn122) .
BIND(?this AS ?pfs1t505) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn121))) AS ?pfsb119) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn122))) AS ?pfse120) .
FILTER ((BOUND(?thisPositionOn121) && BOUND(?thisPositionOn122))) .
BIND(URI(CONCAT(STR(?this), '#MF_01844a118')) AS ?annotation118) .
BIND(?this AS ?pfs117) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch511 faldo:location ?templateMotifSequenceMatchRegionP13738512 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP13738514 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP13738MF_01844507 .
?templateMotifSequenceMatchRegionP13738512 faldo:begin ?templateMotifSequenceMatchBeginP13738513 .
?templateMotifSequenceMatchBeginP13738513 faldo:position ?templateMotifSequenceMatchBeginPositionP13738508 ;
faldo:reference isoform:P13738-1 .
?templateMotifSequenceProfileAlignmentOperationP13738514 edam:has_input signature:MF_01844 ;
rdf:type edam:operation_0300 .
?targetMotifMatch515 faldo:location ?targetMotifMatchRegionMatch516 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01844518 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP13738MF_01844509 .
?targetMotifMatchRegionMatch516 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01844517 .
?targetMotifMatchRegionMatchBeginMF_01844517 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01844510 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01844518 edam:has_input signature:MF_01844 ;
rdf:type edam:operation_0300 .
VALUES ?supertaxon506 {taxon:620 taxon:561}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon506 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13738MF_01844507, 1, (STRLEN(?templateMotifCigarP13738MF_01844507) - STRLEN(REPLACE(?templateMotifCigarP13738MF_01844507, CONCAT('^(?:-*[^-]){', STR(((287 - ?templateMotifSequenceMatchBeginPositionP13738508) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1519) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13738MF_01844509, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844509) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844509, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1519), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13738MF_01844509, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844509) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844509, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1519), '}'), '')))), '[^-]', ''))) AS ?step2520) .
BIND(((?step2520 + ?targetMotifMatchRegionMatchBeginPositionMF_01844510) - 1) AS ?thisPositionOn127) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13738MF_01844507, 1, (STRLEN(?templateMotifCigarP13738MF_01844507) - STRLEN(REPLACE(?templateMotifCigarP13738MF_01844507, CONCAT('^(?:-*[^-]){', STR(((310 - ?templateMotifSequenceMatchBeginPositionP13738508) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1521) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13738MF_01844509, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844509) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844509, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1521), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13738MF_01844509, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844509) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844509, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1521), '}'), '')))), '[^-]', ''))) AS ?step2522) .
BIND(((?step2522 + ?targetMotifMatchRegionMatchBeginPositionMF_01844510) - 1) AS ?thisPositionOn128) .
BIND(?this AS ?pfs1t523) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn127))) AS ?pfsb125) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn128))) AS ?pfse126) .
FILTER ((BOUND(?thisPositionOn127) && BOUND(?thisPositionOn128))) .
BIND(URI(CONCAT(STR(?this), '#MF_01844a124')) AS ?annotation124) .
BIND(?this AS ?pfs123) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch529 faldo:location ?templateMotifSequenceMatchRegionP13738530 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP13738532 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP13738MF_01844525 .
?templateMotifSequenceMatchRegionP13738530 faldo:begin ?templateMotifSequenceMatchBeginP13738531 .
?templateMotifSequenceMatchBeginP13738531 faldo:position ?templateMotifSequenceMatchBeginPositionP13738526 ;
faldo:reference isoform:P13738-1 .
?templateMotifSequenceProfileAlignmentOperationP13738532 edam:has_input signature:MF_01844 ;
rdf:type edam:operation_0300 .
?targetMotifMatch533 faldo:location ?targetMotifMatchRegionMatch534 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01844536 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP13738MF_01844527 .
?targetMotifMatchRegionMatch534 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01844535 .
?targetMotifMatchRegionMatchBeginMF_01844535 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01844528 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01844536 edam:has_input signature:MF_01844 ;
rdf:type edam:operation_0300 .
VALUES ?supertaxon524 {taxon:620 taxon:561}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon524 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13738MF_01844525, 1, (STRLEN(?templateMotifCigarP13738MF_01844525) - STRLEN(REPLACE(?templateMotifCigarP13738MF_01844525, CONCAT('^(?:-*[^-]){', STR(((311 - ?templateMotifSequenceMatchBeginPositionP13738526) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1537) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13738MF_01844527, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844527) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844527, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1537), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13738MF_01844527, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844527) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844527, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1537), '}'), '')))), '[^-]', ''))) AS ?step2538) .
BIND(((?step2538 + ?targetMotifMatchRegionMatchBeginPositionMF_01844528) - 1) AS ?thisPositionOn133) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13738MF_01844525, 1, (STRLEN(?templateMotifCigarP13738MF_01844525) - STRLEN(REPLACE(?templateMotifCigarP13738MF_01844525, CONCAT('^(?:-*[^-]){', STR(((339 - ?templateMotifSequenceMatchBeginPositionP13738526) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1539) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13738MF_01844527, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844527) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844527, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1539), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13738MF_01844527, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844527) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844527, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1539), '}'), '')))), '[^-]', ''))) AS ?step2540) .
BIND(((?step2540 + ?targetMotifMatchRegionMatchBeginPositionMF_01844528) - 1) AS ?thisPositionOn134) .
BIND(?this AS ?pfs1t541) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn133))) AS ?pfsb131) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn134))) AS ?pfse132) .
FILTER ((BOUND(?thisPositionOn133) && BOUND(?thisPositionOn134))) .
BIND(URI(CONCAT(STR(?this), '#MF_01844a130')) AS ?annotation130) .
BIND(?this AS ?pfs129) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch547 faldo:location ?templateMotifSequenceMatchRegionP13738548 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP13738550 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP13738MF_01844543 .
?templateMotifSequenceMatchRegionP13738548 faldo:begin ?templateMotifSequenceMatchBeginP13738549 .
?templateMotifSequenceMatchBeginP13738549 faldo:position ?templateMotifSequenceMatchBeginPositionP13738544 ;
faldo:reference isoform:P13738-1 .
?templateMotifSequenceProfileAlignmentOperationP13738550 edam:has_input signature:MF_01844 ;
rdf:type edam:operation_0300 .
?targetMotifMatch551 faldo:location ?targetMotifMatchRegionMatch552 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01844554 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP13738MF_01844545 .
?targetMotifMatchRegionMatch552 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01844553 .
?targetMotifMatchRegionMatchBeginMF_01844553 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01844546 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01844554 edam:has_input signature:MF_01844 ;
rdf:type edam:operation_0300 .
VALUES ?supertaxon542 {taxon:620 taxon:561}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon542 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13738MF_01844543, 1, (STRLEN(?templateMotifCigarP13738MF_01844543) - STRLEN(REPLACE(?templateMotifCigarP13738MF_01844543, CONCAT('^(?:-*[^-]){', STR(((340 - ?templateMotifSequenceMatchBeginPositionP13738544) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1555) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13738MF_01844545, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844545) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844545, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1555), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13738MF_01844545, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844545) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844545, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1555), '}'), '')))), '[^-]', ''))) AS ?step2556) .
BIND(((?step2556 + ?targetMotifMatchRegionMatchBeginPositionMF_01844546) - 1) AS ?thisPositionOn139) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13738MF_01844543, 1, (STRLEN(?templateMotifCigarP13738MF_01844543) - STRLEN(REPLACE(?templateMotifCigarP13738MF_01844543, CONCAT('^(?:-*[^-]){', STR(((350 - ?templateMotifSequenceMatchBeginPositionP13738544) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1557) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13738MF_01844545, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844545) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844545, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1557), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13738MF_01844545, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844545) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844545, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1557), '}'), '')))), '[^-]', ''))) AS ?step2558) .
BIND(((?step2558 + ?targetMotifMatchRegionMatchBeginPositionMF_01844546) - 1) AS ?thisPositionOn140) .
BIND(?this AS ?pfs1t559) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn139))) AS ?pfsb137) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn140))) AS ?pfse138) .
FILTER ((BOUND(?thisPositionOn139) && BOUND(?thisPositionOn140))) .
BIND(URI(CONCAT(STR(?this), '#MF_01844a136')) AS ?annotation136) .
BIND(?this AS ?pfs135) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch565 faldo:location ?templateMotifSequenceMatchRegionP13738566 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP13738568 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP13738MF_01844561 .
?templateMotifSequenceMatchRegionP13738566 faldo:begin ?templateMotifSequenceMatchBeginP13738567 .
?templateMotifSequenceMatchBeginP13738567 faldo:position ?templateMotifSequenceMatchBeginPositionP13738562 ;
faldo:reference isoform:P13738-1 .
?templateMotifSequenceProfileAlignmentOperationP13738568 edam:has_input signature:MF_01844 ;
rdf:type edam:operation_0300 .
?targetMotifMatch569 faldo:location ?targetMotifMatchRegionMatch570 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01844572 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP13738MF_01844563 .
?targetMotifMatchRegionMatch570 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01844571 .
?targetMotifMatchRegionMatchBeginMF_01844571 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01844564 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01844572 edam:has_input signature:MF_01844 ;
rdf:type edam:operation_0300 .
VALUES ?supertaxon560 {taxon:620 taxon:561}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon560 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13738MF_01844561, 1, (STRLEN(?templateMotifCigarP13738MF_01844561) - STRLEN(REPLACE(?templateMotifCigarP13738MF_01844561, CONCAT('^(?:-*[^-]){', STR(((351 - ?templateMotifSequenceMatchBeginPositionP13738562) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1573) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13738MF_01844563, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844563) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844563, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1573), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13738MF_01844563, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844563) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844563, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1573), '}'), '')))), '[^-]', ''))) AS ?step2574) .
BIND(((?step2574 + ?targetMotifMatchRegionMatchBeginPositionMF_01844564) - 1) AS ?thisPositionOn145) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13738MF_01844561, 1, (STRLEN(?templateMotifCigarP13738MF_01844561) - STRLEN(REPLACE(?templateMotifCigarP13738MF_01844561, CONCAT('^(?:-*[^-]){', STR(((357 - ?templateMotifSequenceMatchBeginPositionP13738562) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1575) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13738MF_01844563, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844563) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844563, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1575), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13738MF_01844563, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844563) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844563, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1575), '}'), '')))), '[^-]', ''))) AS ?step2576) .
BIND(((?step2576 + ?targetMotifMatchRegionMatchBeginPositionMF_01844564) - 1) AS ?thisPositionOn146) .
BIND(?this AS ?pfs1t577) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn145))) AS ?pfsb143) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn146))) AS ?pfse144) .
FILTER ((BOUND(?thisPositionOn145) && BOUND(?thisPositionOn146))) .
BIND(URI(CONCAT(STR(?this), '#MF_01844a142')) AS ?annotation142) .
BIND(?this AS ?pfs141) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch583 faldo:location ?templateMotifSequenceMatchRegionP13738584 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP13738586 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP13738MF_01844579 .
?templateMotifSequenceMatchRegionP13738584 faldo:begin ?templateMotifSequenceMatchBeginP13738585 .
?templateMotifSequenceMatchBeginP13738585 faldo:position ?templateMotifSequenceMatchBeginPositionP13738580 ;
faldo:reference isoform:P13738-1 .
?templateMotifSequenceProfileAlignmentOperationP13738586 edam:has_input signature:MF_01844 ;
rdf:type edam:operation_0300 .
?targetMotifMatch587 faldo:location ?targetMotifMatchRegionMatch588 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01844590 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP13738MF_01844581 .
?targetMotifMatchRegionMatch588 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01844589 .
?targetMotifMatchRegionMatchBeginMF_01844589 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01844582 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01844590 edam:has_input signature:MF_01844 ;
rdf:type edam:operation_0300 .
VALUES ?supertaxon578 {taxon:620 taxon:561}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon578 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13738MF_01844579, 1, (STRLEN(?templateMotifCigarP13738MF_01844579) - STRLEN(REPLACE(?templateMotifCigarP13738MF_01844579, CONCAT('^(?:-*[^-]){', STR(((358 - ?templateMotifSequenceMatchBeginPositionP13738580) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1591) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13738MF_01844581, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844581) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844581, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1591), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13738MF_01844581, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844581) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844581, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1591), '}'), '')))), '[^-]', ''))) AS ?step2592) .
BIND(((?step2592 + ?targetMotifMatchRegionMatchBeginPositionMF_01844582) - 1) AS ?thisPositionOn151) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13738MF_01844579, 1, (STRLEN(?templateMotifCigarP13738MF_01844579) - STRLEN(REPLACE(?templateMotifCigarP13738MF_01844579, CONCAT('^(?:-*[^-]){', STR(((380 - ?templateMotifSequenceMatchBeginPositionP13738580) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1593) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13738MF_01844581, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844581) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844581, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1593), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13738MF_01844581, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844581) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844581, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1593), '}'), '')))), '[^-]', ''))) AS ?step2594) .
BIND(((?step2594 + ?targetMotifMatchRegionMatchBeginPositionMF_01844582) - 1) AS ?thisPositionOn152) .
BIND(?this AS ?pfs1t595) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn151))) AS ?pfsb149) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn152))) AS ?pfse150) .
FILTER ((BOUND(?thisPositionOn151) && BOUND(?thisPositionOn152))) .
BIND(URI(CONCAT(STR(?this), '#MF_01844a148')) AS ?annotation148) .
BIND(?this AS ?pfs147) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch601 faldo:location ?templateMotifSequenceMatchRegionP13738602 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP13738604 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP13738MF_01844597 .
?templateMotifSequenceMatchRegionP13738602 faldo:begin ?templateMotifSequenceMatchBeginP13738603 .
?templateMotifSequenceMatchBeginP13738603 faldo:position ?templateMotifSequenceMatchBeginPositionP13738598 ;
faldo:reference isoform:P13738-1 .
?templateMotifSequenceProfileAlignmentOperationP13738604 edam:has_input signature:MF_01844 ;
rdf:type edam:operation_0300 .
?targetMotifMatch605 faldo:location ?targetMotifMatchRegionMatch606 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01844608 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP13738MF_01844599 .
?targetMotifMatchRegionMatch606 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01844607 .
?targetMotifMatchRegionMatchBeginMF_01844607 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01844600 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01844608 edam:has_input signature:MF_01844 ;
rdf:type edam:operation_0300 .
VALUES ?supertaxon596 {taxon:620 taxon:561}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon596 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13738MF_01844597, 1, (STRLEN(?templateMotifCigarP13738MF_01844597) - STRLEN(REPLACE(?templateMotifCigarP13738MF_01844597, CONCAT('^(?:-*[^-]){', STR(((381 - ?templateMotifSequenceMatchBeginPositionP13738598) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1609) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13738MF_01844599, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844599) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844599, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1609), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13738MF_01844599, 1, (STRLEN(?targetMotifMatchCigarP13738MF_01844599) - STRLEN(REPLACE(?targetMotifMatchCigarP13738MF_01844599, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1609), '}'), '')))), '[^-]', ''))) AS ?step2610) .
BIND(((?step2610 + ?targetMotifMatchRegionMatchBeginPositionMF_01844600) - 1) AS ?thisPositionOn157) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn158) .
BIND(?this AS ?pfs1t611) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn157))) AS ?pfsb155) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn158))) AS ?pfse156) .
FILTER ((BOUND(?thisPositionOn157) && BOUND(?thisPositionOn158))) .
BIND(URI(CONCAT(STR(?this), '#MF_01844a154')) AS ?annotation154) .
BIND(?this AS ?pfs153) .
}
OPTIONAL {
?this a up:Protein .
{
?this up:proteome .
} UNION {
?this up:proteome ?p612 .
?p612 skos:narrower .
}
BIND(?this AS ?case7) .
}
OPTIONAL {
?this a up:Protein .
{
FILTER (! (EXISTS {
{
?this up:proteome .
} UNION {
?this up:proteome ?p613 .
?p613 skos:narrower .
}
})) .
} UNION {
{
?this up:proteome .
} UNION {
?this up:proteome ?p614 .
?p614 skos:narrower .
}
}
BIND(?this AS ?case8) .
}
OPTIONAL {
?this up:annotation ?samtransmembrane615 ;
up:sequence ?thisSequence .
?samtransmembrane615 up:range ?samtransmembraner616 ;
rdf:type up:Transmembrane_Annotation .
?samtransmembraner616 faldo:begin ?samtransmembraneb617 ;
faldo:end ?samtransmembranee618 .
?samtransmembraneb617 faldo:position ?samtransmembranebp619 ;
faldo:reference ?thisSequence .
?samtransmembranee618 faldo:position ?samtransmembraneep620 ;
faldo:reference ?thisSequence .
BIND(?this AS ?sam159) .
}
BIND(URI(CONCAT(STR(?this), '#MF_01844a165')) AS ?keyword165) .
BIND(URI(CONCAT(STR(?this), '#MF_01844a166')) AS ?keyword166) .
BIND(URI(CONCAT(STR(?this), '#MF_01844a167')) AS ?keyword167) .
}
"xsd:string |
