| http://purl.uniprot.org/unirules/MF_01980#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:698072 up:source unirule:MF_01980 .
_:698073 up:source unirule:MF_01980 .
_:698074 up:source unirule:MF_01980 .
_:698075 up:source unirule:MF_01980 .
_:698076 up:source unirule:MF_01980 .
_:698077 up:source unirule:MF_01980 .
_:698078 up:source unirule:MF_01980 .
_:698079 up:source unirule:MF_01980 .
_:698080 up:source unirule:MF_01980 .
_:698081 up:source unirule:MF_01980 .
_:698082 up:source unirule:MF_01980 .
_:698083 up:source unirule:MF_01980 .
_:698084 up:source unirule:MF_01980 .
_:698085 up:source unirule:MF_01980 .
_:698086 up:source unirule:MF_01980 .
_:698087 up:source unirule:MF_01980 .
_:698088 up:source unirule:MF_01980 .
_:698089 up:source unirule:MF_01980 .
_:698090 up:source unirule:MF_01980 .
_:698091 up:source unirule:MF_01980 .
_:698092 up:source unirule:MF_01980 .
_:698093 up:source unirule:MF_01980 .
_:698094 up:source unirule:MF_01980 .
_:698095 up:source unirule:MF_01980 .
_:698096 up:source unirule:MF_01980 .
_:698097 up:source unirule:MF_01980 .
_:698098 up:source unirule:MF_01980 .
_:698099 up:source unirule:MF_01980 .
_:698100 up:source unirule:MF_01980 .
_:698101 up:source unirule:MF_01980 .
_:698102 up:source unirule:MF_01980 .
_:698103 up:source unirule:MF_01980 .
_:698104 up:source unirule:MF_01980 .
_:698105 up:source unirule:MF_01980 .
_:698106 up:source unirule:MF_01980 .
_:698107 up:source unirule:MF_01980 .
_:698108 up:source unirule:MF_01980 .
_:698109 up:source unirule:MF_01980 .
_:698110 up:source unirule:MF_01980 .
_:698111 up:source unirule:MF_01980 .
_:698112 up:source unirule:MF_01980 .
_:698113 up:source unirule:MF_01980 .
_:698114 up:source unirule:MF_01980 .
_:698115 up:source unirule:MF_01980 .
?this up:annotation ?annotation0 ,
?annotation1 ,
?annotation2 ,
?annotation3 ,
?annotation5 ;
up:classifiedWith GO:0003872 ,
GO:0005737 ,
GO:0006096 ,
keyword:324 ,
keyword:418 ,
keyword:460 ,
keyword:479 ,
keyword:808 ,
keyword:963 .
?annotation0 up:cofactor chebi:18420 ;
rdf:type up:Cofactor_Annotation .
?annotation1 a up:Pathway_Annotation ;
rdfs:comment 'Carbohydrate degradation; glycolysis; D-glyceraldehyde 3-phosphate and glycerone phosphate from D-glucose: step 3/4.' .
?annotation2 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation3 a up:Subcellular_Location_Annotation .
?annotation3li4 up:cellularComponent .
?annotation5 a up:Similarity_Annotation ;
rdfs:comment "Belongs to the phosphofructokinase type A (PFKA) family. PPi-dependent PFK group II subfamily. Clade 'Long' sub-subfamily." .
?case6 up:classifiedWith keyword:547 ,
keyword:67 .
?case7 up:alternativeName ?name9 ,
?name10 ,
?name11 ;
up:recommendedName ?name8 .
?name8 up:ecName '2.7.1.90' ;
up:fullName 'Pyrophosphate--fructose 6-phosphate 1-phosphotransferase' ;
rdf:type up:Structured_Name .
?name9 up:fullName '6-phosphofructokinase, pyrophosphate dependent' ;
rdf:type up:Structured_Name .
?name10 up:fullName 'PPi-dependent phosphofructokinase' ;
up:shortName 'PPi-PFK' ;
rdf:type up:Structured_Name .
?name11 up:fullName 'Pyrophosphate-dependent 6-phosphofructose-1-kinase' ;
rdf:type up:Structured_Name .
?case12 up:alternativeName ?name14 ;
up:recommendedName ?name13 .
?name13 up:ecName '2.7.1.11' ;
up:fullName 'Probable ATP-dependent 6-phosphofructokinase' ;
up:shortName 'ATP-PFK' ,
'Phosphofructokinase' ;
rdf:type up:Structured_Name .
?name14 up:fullName 'Phosphohexokinase' ;
rdf:type up:Structured_Name .
?case15 up:recommendedName ?name16 .
?name16 up:ecName '2.7.1.-' ;
up:fullName '6-phosphofructokinase' ;
rdf:type up:Structured_Name .
?pfs17 up:annotation ?annotation18 .
?annotation18 faldo:begin ?pfsb19 ;
faldo:end ?pfse20 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Important for substrate specificity; cannot use PPi as phosphoryl donor' .
?pfsb19 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfse20 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfs23 up:annotation ?annotation24 .
?annotation24 faldo:begin ?pfsb25 ;
faldo:end ?pfse26 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Important for catalytic activity and substrate specificity; stabilizes the transition state when the phosphoryl donor is PPi; prevents ATP from binding by mimicking the alpha-phosphate group of ATP' .
?pfsb25 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfse26 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfs29 up:annotation ?annotation30 .
?annotation30 faldo:begin ?pfsb31 ;
faldo:end ?pfse32 ;
up:ligand ?ligand33 ;
rdf:type up:Binding_Site_Annotation .
?pfsb31 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfse32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?ligand33 rdfs:subClassOf chebi:33019 .
?pfs36 up:annotation ?annotation37 .
?annotation37 faldo:begin ?pfsb38 ;
faldo:end ?pfse39 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Important for catalytic activity; stabilizes the transition state when the phosphoryl donor is PPi' .
?pfsb38 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?pfse39 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?pfs42 up:annotation ?annotation43 .
?annotation43 faldo:begin ?pfsb44 ;
faldo:end ?pfse45 ;
up:ligand ?ligand46 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in other chain' .
?pfsb44 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?pfse45 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?ligand46 rdfs:subClassOf ?molecule47 .
?molecule47 rdfs:label 'substrate' .
?pfs50 up:annotation ?annotation51 .
?annotation51 faldo:begin ?pfsb52 ;
faldo:end ?pfse53 ;
up:ligand ?ligand54 ;
rdf:type up:Binding_Site_Annotation .
?pfsb52 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?pfse53 faldo:position ?thisPositionOn57 ;
rdf:type faldo:ExactPosition .
?ligand54 rdfs:subClassOf ?molecule55 .
?molecule55 rdfs:label 'substrate' .
?pfs58 up:annotation ?annotation59 .
?annotation59 faldo:begin ?pfsb60 ;
faldo:end ?pfse61 ;
up:ligand ?ligand62 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in other chain' .
?pfsb60 faldo:position ?thisPositionOn64 ;
rdf:type faldo:ExactPosition .
?pfse61 faldo:position ?thisPositionOn65 ;
rdf:type faldo:ExactPosition .
?ligand62 rdfs:subClassOf ?molecule63 .
?molecule63 rdfs:label 'substrate' .
?pfs66 up:annotation ?annotation67 .
?annotation67 faldo:begin ?pfsb68 ;
faldo:end ?pfse69 ;
up:ligand ?ligand70 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in other chain' .
?pfsb68 faldo:position ?thisPositionOn72 ;
rdf:type faldo:ExactPosition .
?pfse69 faldo:position ?thisPositionOn73 ;
rdf:type faldo:ExactPosition .
?ligand70 rdfs:subClassOf ?molecule71 .
?molecule71 rdfs:label 'substrate' .
?pfs74 up:annotation ?annotation75 .
?annotation75 faldo:begin ?pfsb76 ;
faldo:end ?pfse77 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb76 faldo:position ?thisPositionOn78 ;
rdf:type faldo:ExactPosition .
?pfse77 faldo:position ?thisPositionOn79 ;
rdf:type faldo:ExactPosition .
?pfs80 up:annotation ?annotation81 .
?annotation81 faldo:begin ?pfsb82 ;
faldo:end ?pfse83 ;
up:ligand ?ligand84 ;
rdf:type up:Binding_Site_Annotation .
?pfsb82 faldo:position ?thisPositionOn85 ;
rdf:type faldo:ExactPosition .
?pfse83 faldo:position ?thisPositionOn86 ;
rdf:type faldo:ExactPosition .
?ligand84 rdfs:subClassOf chebi:18420 .
?pfs87 up:annotation ?annotation88 .
?annotation88 faldo:begin ?pfsb89 ;
faldo:end ?pfse90 ;
up:ligand ?ligand91 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in other chain' .
?pfsb89 faldo:position ?thisPositionOn93 ;
rdf:type faldo:ExactPosition .
?pfse90 faldo:position ?thisPositionOn94 ;
rdf:type faldo:ExactPosition .
?ligand91 rdfs:subClassOf ?molecule92 .
?molecule92 rdfs:label 'substrate' .
?pfs95 up:annotation ?annotation96 .
?annotation96 faldo:begin ?pfsb97 ;
faldo:end ?pfse98 ;
up:ligand ?ligand99 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in other chain' .
?pfsb97 faldo:position ?thisPositionOn101 ;
rdf:type faldo:ExactPosition .
?pfse98 faldo:position ?thisPositionOn102 ;
rdf:type faldo:ExactPosition .
?ligand99 rdfs:subClassOf ?molecule100 .
?molecule100 rdfs:label 'substrate' .
?pfs103 up:annotation ?annotation104 .
?annotation104 faldo:begin ?pfsb105 ;
faldo:end ?pfse106 ;
up:ligand ?ligand107 ;
rdf:type up:Binding_Site_Annotation .
?pfsb105 faldo:position ?thisPositionOn109 ;
rdf:type faldo:ExactPosition .
?pfse106 faldo:position ?thisPositionOn110 ;
rdf:type faldo:ExactPosition .
?ligand107 rdfs:subClassOf ?molecule108 .
?molecule108 rdfs:label 'substrate' .
?pfs111 up:annotation ?annotation112 .
?annotation112 faldo:begin ?pfsb113 ;
faldo:end ?pfse114 ;
up:ligand ?ligand115 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in other chain' .
?pfsb113 faldo:position ?thisPositionOn117 ;
rdf:type faldo:ExactPosition .
?pfse114 faldo:position ?thisPositionOn118 ;
rdf:type faldo:ExactPosition .
?ligand115 rdfs:subClassOf ?molecule116 .
?molecule116 rdfs:label 'substrate' .
?pfs119 up:annotation ?annotation120 .
?annotation120 faldo:begin ?pfsb121 ;
faldo:end ?pfse122 ;
up:ligand ?ligand123 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in other chain' .
?pfsb121 faldo:position ?thisPositionOn125 ;
rdf:type faldo:ExactPosition .
?pfse122 faldo:position ?thisPositionOn126 ;
rdf:type faldo:ExactPosition .
?ligand123 rdfs:subClassOf ?molecule124 .
?molecule124 rdfs:label 'substrate' .
?pfs127 up:annotation ?annotation128 .
?annotation128 faldo:begin ?pfsb129 ;
faldo:end ?pfse130 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb129 faldo:position ?thisPositionOn131 ;
rdf:type faldo:ExactPosition .
?pfse130 faldo:position ?thisPositionOn132 ;
rdf:type faldo:ExactPosition .
?pfs133 up:annotation ?annotation134 .
?annotation134 faldo:begin ?pfsb135 ;
faldo:end ?pfse136 ;
up:ligand ?ligand137 ;
rdf:type up:Binding_Site_Annotation .
?pfsb135 faldo:position ?thisPositionOn138 ;
rdf:type faldo:ExactPosition .
?pfse136 faldo:position ?thisPositionOn139 ;
rdf:type faldo:ExactPosition .
?ligand137 rdfs:subClassOf chebi:18420 .
?pfs140 up:annotation ?annotation141 .
?annotation141 faldo:begin ?pfsb142 ;
faldo:end ?pfse143 ;
up:ligand ?ligand144 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in other chain' .
?pfsb142 faldo:position ?thisPositionOn146 ;
rdf:type faldo:ExactPosition .
?pfse143 faldo:position ?thisPositionOn147 ;
rdf:type faldo:ExactPosition .
?ligand144 rdfs:subClassOf ?molecule145 .
?molecule145 rdfs:label 'substrate' .
?pfs148 up:annotation ?annotation149 .
?annotation149 faldo:begin ?pfsb150 ;
faldo:end ?pfse151 ;
up:ligand ?ligand152 ;
rdf:type up:Binding_Site_Annotation .
?pfsb150 faldo:position ?thisPositionOn153 ;
rdf:type faldo:ExactPosition .
?pfse151 faldo:position ?thisPositionOn154 ;
rdf:type faldo:ExactPosition .
?ligand152 rdfs:subClassOf chebi:30616 .
?pfs155 up:annotation ?annotation156 .
?annotation156 faldo:begin ?pfsb157 ;
faldo:end ?pfse158 ;
up:ligand ?ligand159 ;
rdf:type up:Binding_Site_Annotation .
?pfsb157 faldo:position ?thisPositionOn160 ;
rdf:type faldo:ExactPosition .
?pfse158 faldo:position ?thisPositionOn161 ;
rdf:type faldo:ExactPosition .
?ligand159 rdfs:subClassOf chebi:30616 .
?pfs162 up:annotation ?annotation163 .
?annotation163 faldo:begin ?pfsb164 ;
faldo:end ?pfse165 ;
up:ligand ?ligand166 ;
rdf:type up:Binding_Site_Annotation .
?pfsb164 faldo:position ?thisPositionOn167 ;
rdf:type faldo:ExactPosition .
?pfse165 faldo:position ?thisPositionOn168 ;
rdf:type faldo:ExactPosition .
?ligand166 rdfs:subClassOf chebi:30616 .
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rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation0 .
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rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation1 .
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rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
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rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
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rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
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rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
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rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:418 .
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rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
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rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:324 .
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rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:698126 a rdf:Statement ;
up:attribution _:698082 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:698127 a rdf:Statement ;
up:attribution _:698083 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003872 .
_:698128 a rdf:Statement ;
up:attribution _:698084 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006096 .
_:698129 a rdf:Statement ;
up:attribution _:698085 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
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up:attribution _:698086 ;
rdf:subject ?case6 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
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rdf:subject ?case6 ;
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rdf:subject ?case7 ;
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rdf:subject ?case7 ;
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rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
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rdf:predicate up:annotation ;
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up:source unirule:MF_01980 ;
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rdf:predicate up:annotation ;
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rdf:predicate up:annotation ;
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rdf:predicate up:annotation ;
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rdf:predicate up:annotation ;
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rdf:predicate up:annotation ;
rdf:object ?annotation37 .
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rdf:predicate up:annotation ;
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up:source unirule:MF_01980 ;
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up:source unirule:MF_01980 ;
rdf:subject ?pfs127 ;
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up:attribution _:698114 ;
rdf:subject ?pfs155 ;
rdf:predicate up:annotation ;
rdf:object ?annotation156 .
_:698179 a rdf:Statement ;
up:source unirule:MF_01980 ;
rdf:subject ?pfs162 ;
rdf:predicate up:annotation ;
rdf:object ?annotation163 .
_:698180 a rdf:Statement ;
up:attribution _:698115 ;
rdf:subject ?pfs162 ;
rdf:predicate up:annotation ;
rdf:object ?annotation163 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01980
#Rule MF_01980 Created by:? on:2014-05-16 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01980 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_01980a0')) AS ?annotation0) .
BIND(URI(CONCAT(STR(?this), '#MF_01980a1')) AS ?annotation1) .
BIND(URI(CONCAT(STR(?this), '#MF_01980a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01980a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01980a5')) AS ?annotation5) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch173 faldo:location ?templateMotifSequenceMatchRegionP70826174 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP70826176 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP70826MF_01980169 .
?templateMotifSequenceMatchRegionP70826174 faldo:begin ?templateMotifSequenceMatchBeginP70826175 .
?templateMotifSequenceMatchBeginP70826175 faldo:position ?templateMotifSequenceMatchBeginPositionP70826170 ;
faldo:reference isoform:P70826-1 .
?templateMotifSequenceProfileAlignmentOperationP70826176 edam:has_input signature:MF_01980 ;
rdf:type edam:operation_0300 .
?targetMotifMatch177 faldo:location ?targetMotifMatchRegionMatch178 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01980180 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP70826MF_01980171 .
?targetMotifMatchRegionMatch178 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01980179 .
?targetMotifMatchRegionMatchBeginMF_01980179 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01980172 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01980180 edam:has_input signature:MF_01980 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFT_2) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP70826MF_01980169, 1, (STRLEN(?templateMotifCigarP70826MF_01980169) - STRLEN(REPLACE(?templateMotifCigarP70826MF_01980169, CONCAT('^(?:-*[^-]){', STR(((177 - ?templateMotifSequenceMatchBeginPositionP70826170) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1181) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP70826MF_01980171, 1, (STRLEN(?targetMotifMatchCigarP70826MF_01980171) - STRLEN(REPLACE(?targetMotifMatchCigarP70826MF_01980171, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1181), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP70826MF_01980171, 1, (STRLEN(?targetMotifMatchCigarP70826MF_01980171) - STRLEN(REPLACE(?targetMotifMatchCigarP70826MF_01980171, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1181), '}'), '')))), '[^-]', ''))) AS ?step2182) .
BIND(((?step2182 + ?targetMotifMatchRegionMatchBeginPositionMF_01980172) - 1) AS ?thisPositionOn21) .
BIND(?thisPositionOn21 AS ?thisPositionOn22) .
BIND(?this AS ?pfs1t183) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb19) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse20) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn21, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_01980a18')) AS ?annotation18) .
BIND(?this AS ?pfs17) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch188 faldo:location ?templateMotifSequenceMatchRegionP70826189 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP70826191 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP70826MF_01980184 .
?templateMotifSequenceMatchRegionP70826189 faldo:begin ?templateMotifSequenceMatchBeginP70826190 .
?templateMotifSequenceMatchBeginP70826190 faldo:position ?templateMotifSequenceMatchBeginPositionP70826185 ;
faldo:reference isoform:P70826-1 .
?templateMotifSequenceProfileAlignmentOperationP70826191 edam:has_input signature:MF_01980 ;
rdf:type edam:operation_0300 .
?targetMotifMatch192 faldo:location ?targetMotifMatchRegionMatch193 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01980195 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP70826MF_01980186 .
?targetMotifMatchRegionMatch193 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01980194 .
?targetMotifMatchRegionMatchBeginMF_01980194 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01980187 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01980195 edam:has_input signature:MF_01980 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFT_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP70826MF_01980184, 1, (STRLEN(?templateMotifCigarP70826MF_01980184) - STRLEN(REPLACE(?templateMotifCigarP70826MF_01980184, CONCAT('^(?:-*[^-]){', STR(((177 - ?templateMotifSequenceMatchBeginPositionP70826185) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1196) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP70826MF_01980186, 1, (STRLEN(?targetMotifMatchCigarP70826MF_01980186) - STRLEN(REPLACE(?targetMotifMatchCigarP70826MF_01980186, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1196), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP70826MF_01980186, 1, (STRLEN(?targetMotifMatchCigarP70826MF_01980186) - STRLEN(REPLACE(?targetMotifMatchCigarP70826MF_01980186, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1196), '}'), '')))), '[^-]', ''))) AS ?step2197) .
BIND(((?step2197 + ?targetMotifMatchRegionMatchBeginPositionMF_01980187) - 1) AS ?thisPositionOn27) .
BIND(?thisPositionOn27 AS ?thisPositionOn28) .
BIND(?this AS ?pfs2t198) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse26) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn27, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01980a24')) AS ?annotation24) .
BIND(?this AS ?pfs23) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch203 faldo:location ?templateMotifSequenceMatchRegionP70826204 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP70826206 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP70826MF_01980199 .
?templateMotifSequenceMatchRegionP70826204 faldo:begin ?templateMotifSequenceMatchBeginP70826205 .
?templateMotifSequenceMatchBeginP70826205 faldo:position ?templateMotifSequenceMatchBeginPositionP70826200 ;
faldo:reference isoform:P70826-1 .
?templateMotifSequenceProfileAlignmentOperationP70826206 edam:has_input signature:MF_01980 ;
rdf:type edam:operation_0300 .
?targetMotifMatch207 faldo:location ?targetMotifMatchRegionMatch208 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01980210 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP70826MF_01980201 .
?targetMotifMatchRegionMatch208 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01980209 .
?targetMotifMatchRegionMatchBeginMF_01980209 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01980202 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01980210 edam:has_input signature:MF_01980 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP70826MF_01980199, 1, (STRLEN(?templateMotifCigarP70826MF_01980199) - STRLEN(REPLACE(?templateMotifCigarP70826MF_01980199, CONCAT('^(?:-*[^-]){', STR(((82 - ?templateMotifSequenceMatchBeginPositionP70826200) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1211) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP70826MF_01980201, 1, (STRLEN(?targetMotifMatchCigarP70826MF_01980201) - STRLEN(REPLACE(?targetMotifMatchCigarP70826MF_01980201, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1211), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP70826MF_01980201, 1, (STRLEN(?targetMotifMatchCigarP70826MF_01980201) - STRLEN(REPLACE(?targetMotifMatchCigarP70826MF_01980201, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1211), '}'), '')))), '[^-]', ''))) AS ?step2212) .
BIND(((?step2212 + ?targetMotifMatchRegionMatchBeginPositionMF_01980202) - 1) AS ?thisPositionOn34) .
BIND(?thisPositionOn34 AS ?thisPositionOn35) .
BIND(?this AS ?pfs3t213) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb31) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse32) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn34, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_01980a30')) AS ?annotation30) .
BIND(?this AS ?pfs29) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch218 faldo:location ?templateMotifSequenceMatchRegionP70826219 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP70826221 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP70826MF_01980214 .
?templateMotifSequenceMatchRegionP70826219 faldo:begin ?templateMotifSequenceMatchBeginP70826220 .
?templateMotifSequenceMatchBeginP70826220 faldo:position ?templateMotifSequenceMatchBeginPositionP70826215 ;
faldo:reference isoform:P70826-1 .
?templateMotifSequenceProfileAlignmentOperationP70826221 edam:has_input signature:MF_01980 ;
rdf:type edam:operation_0300 .
?targetMotifMatch222 faldo:location ?targetMotifMatchRegionMatch223 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01980225 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP70826MF_01980216 .
?targetMotifMatchRegionMatch223 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01980224 .
?targetMotifMatchRegionMatchBeginMF_01980224 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01980217 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01980225 edam:has_input signature:MF_01980 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP70826MF_01980214, 1, (STRLEN(?templateMotifCigarP70826MF_01980214) - STRLEN(REPLACE(?templateMotifCigarP70826MF_01980214, CONCAT('^(?:-*[^-]){', STR(((203 - ?templateMotifSequenceMatchBeginPositionP70826215) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1226) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP70826MF_01980216, 1, (STRLEN(?targetMotifMatchCigarP70826MF_01980216) - STRLEN(REPLACE(?targetMotifMatchCigarP70826MF_01980216, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1226), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP70826MF_01980216, 1, (STRLEN(?targetMotifMatchCigarP70826MF_01980216) - STRLEN(REPLACE(?targetMotifMatchCigarP70826MF_01980216, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1226), '}'), '')))), '[^-]', ''))) AS ?step2227) .
BIND(((?step2227 + ?targetMotifMatchRegionMatchBeginPositionMF_01980217) - 1) AS ?thisPositionOn40) .
BIND(?thisPositionOn40 AS ?thisPositionOn41) .
BIND(?this AS ?pfs3t228) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfsb38) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfse39) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn40, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01980a37')) AS ?annotation37) .
BIND(?this AS ?pfs36) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch233 faldo:location ?templateMotifSequenceMatchRegionP70826234 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP70826236 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP70826MF_01980229 .
?templateMotifSequenceMatchRegionP70826234 faldo:begin ?templateMotifSequenceMatchBeginP70826235 .
?templateMotifSequenceMatchBeginP70826235 faldo:position ?templateMotifSequenceMatchBeginPositionP70826230 ;
faldo:reference isoform:P70826-1 .
?templateMotifSequenceProfileAlignmentOperationP70826236 edam:has_input signature:MF_01980 ;
rdf:type edam:operation_0300 .
?targetMotifMatch237 faldo:location ?targetMotifMatchRegionMatch238 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01980240 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP70826MF_01980231 .
?targetMotifMatchRegionMatch238 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01980239 .
?targetMotifMatchRegionMatchBeginMF_01980239 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01980232 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01980240 edam:has_input signature:MF_01980 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP70826MF_01980229, 1, (STRLEN(?templateMotifCigarP70826MF_01980229) - STRLEN(REPLACE(?templateMotifCigarP70826MF_01980229, CONCAT('^(?:-*[^-]){', STR(((204 - ?templateMotifSequenceMatchBeginPositionP70826230) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1241) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP70826MF_01980231, 1, (STRLEN(?targetMotifMatchCigarP70826MF_01980231) - STRLEN(REPLACE(?targetMotifMatchCigarP70826MF_01980231, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1241), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP70826MF_01980231, 1, (STRLEN(?targetMotifMatchCigarP70826MF_01980231) - STRLEN(REPLACE(?targetMotifMatchCigarP70826MF_01980231, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1241), '}'), '')))), '[^-]', ''))) AS ?step2242) .
BIND(((?step2242 + ?targetMotifMatchRegionMatchBeginPositionMF_01980232) - 1) AS ?thisPositionOn48) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP70826MF_01980229, 1, (STRLEN(?templateMotifCigarP70826MF_01980229) - STRLEN(REPLACE(?templateMotifCigarP70826MF_01980229, CONCAT('^(?:-*[^-]){', STR(((206 - ?templateMotifSequenceMatchBeginPositionP70826230) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1243) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP70826MF_01980231, 1, (STRLEN(?targetMotifMatchCigarP70826MF_01980231) - STRLEN(REPLACE(?targetMotifMatchCigarP70826MF_01980231, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1243), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP70826MF_01980231, 1, (STRLEN(?targetMotifMatchCigarP70826MF_01980231) - STRLEN(REPLACE(?targetMotifMatchCigarP70826MF_01980231, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1243), '}'), '')))), '[^-]', ''))) AS ?step2244) .
BIND(((?step2244 + ?targetMotifMatchRegionMatchBeginPositionMF_01980232) - 1) AS ?thisPositionOn49) .
BIND(?this AS ?pfs3t245) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfsb44) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfse45) .
FILTER (REGEX('T[ARNDCQEGHILKMFPSTWYVBZJUOX]D', SUBSTR(?thisSequenceValue, ?thisPositionOn48, (?thisPositionOn49 - ?thisPositionOn48)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01980a43')) AS ?annotation43) .
BIND(?this AS ?pfs42) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch250 faldo:location ?templateMotifSequenceMatchRegionP70826251 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP70826253 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP70826MF_01980246 .
?templateMotifSequenceMatchRegionP70826251 faldo:begin ?templateMotifSequenceMatchBeginP70826252 .
?templateMotifSequenceMatchBeginP70826252 faldo:position ?templateMotifSequenceMatchBeginPositionP70826247 ;
faldo:reference isoform:P70826-1 .
?templateMotifSequenceProfileAlignmentOperationP70826253 edam:has_input signature:MF_01980 ;
rdf:type edam:operation_0300 .
?targetMotifMatch254 faldo:location ?targetMotifMatchRegionMatch255 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01980257 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP70826MF_01980248 .
?targetMotifMatchRegionMatch255 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01980256 .
?targetMotifMatchRegionMatchBeginMF_01980256 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01980249 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01980257 edam:has_input signature:MF_01980 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP70826MF_01980246, 1, (STRLEN(?templateMotifCigarP70826MF_01980246) - STRLEN(REPLACE(?templateMotifCigarP70826MF_01980246, CONCAT('^(?:-*[^-]){', STR(((243 - ?templateMotifSequenceMatchBeginPositionP70826247) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1258) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP70826MF_01980248, 1, (STRLEN(?targetMotifMatchCigarP70826MF_01980248) - STRLEN(REPLACE(?targetMotifMatchCigarP70826MF_01980248, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1258), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP70826MF_01980248, 1, (STRLEN(?targetMotifMatchCigarP70826MF_01980248) - STRLEN(REPLACE(?targetMotifMatchCigarP70826MF_01980248, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1258), '}'), '')))), '[^-]', ''))) AS ?step2259) .
BIND(((?step2259 + ?targetMotifMatchRegionMatchBeginPositionMF_01980249) - 1) AS ?thisPositionOn56) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP70826MF_01980246, 1, (STRLEN(?templateMotifCigarP70826MF_01980246) - STRLEN(REPLACE(?templateMotifCigarP70826MF_01980246, CONCAT('^(?:-*[^-]){', STR(((244 - ?templateMotifSequenceMatchBeginPositionP70826247) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1260) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP70826MF_01980248, 1, (STRLEN(?targetMotifMatchCigarP70826MF_01980248) - STRLEN(REPLACE(?targetMotifMatchCigarP70826MF_01980248, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1260), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP70826MF_01980248, 1, (STRLEN(?targetMotifMatchCigarP70826MF_01980248) - STRLEN(REPLACE(?targetMotifMatchCigarP70826MF_01980248, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1260), '}'), '')))), '[^-]', ''))) AS ?step2261) .
BIND(((?step2261 + ?targetMotifMatchRegionMatchBeginPositionMF_01980249) - 1) AS ?thisPositionOn57) .
BIND(?this AS ?pfs3t262) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfsb52) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfse53) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn56, (?thisPositionOn57 - ?thisPositionOn56)) = 'KY')) .
BIND(URI(CONCAT(STR(?this), '#MF_01980a51')) AS ?annotation51) .
BIND(?this AS ?pfs50) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch267 faldo:location ?templateMotifSequenceMatchRegionP70826268 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP70826270 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP70826MF_01980263 .
?templateMotifSequenceMatchRegionP70826268 faldo:begin ?templateMotifSequenceMatchBeginP70826269 .
?templateMotifSequenceMatchBeginP70826269 faldo:position ?templateMotifSequenceMatchBeginPositionP70826264 ;
faldo:reference isoform:P70826-1 .
?templateMotifSequenceProfileAlignmentOperationP70826270 edam:has_input signature:MF_01980 ;
rdf:type edam:operation_0300 .
?targetMotifMatch271 faldo:location ?targetMotifMatchRegionMatch272 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01980274 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP70826MF_01980265 .
?targetMotifMatchRegionMatch272 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01980273 .
?targetMotifMatchRegionMatchBeginMF_01980273 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01980266 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01980274 edam:has_input signature:MF_01980 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP70826MF_01980263, 1, (STRLEN(?templateMotifCigarP70826MF_01980263) - STRLEN(REPLACE(?templateMotifCigarP70826MF_01980263, CONCAT('^(?:-*[^-]){', STR(((251 - ?templateMotifSequenceMatchBeginPositionP70826264) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1275) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP70826MF_01980265, 1, (STRLEN(?targetMotifMatchCigarP70826MF_01980265) - STRLEN(REPLACE(?targetMotifMatchCigarP70826MF_01980265, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1275), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP70826MF_01980265, 1, (STRLEN(?targetMotifMatchCigarP70826MF_01980265) - STRLEN(REPLACE(?targetMotifMatchCigarP70826MF_01980265, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1275), '}'), '')))), '[^-]', ''))) AS ?step2276) .
BIND(((?step2276 + ?targetMotifMatchRegionMatchBeginPositionMF_01980266) - 1) AS ?thisPositionOn64) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP70826MF_01980263, 1, (STRLEN(?templateMotifCigarP70826MF_01980263) - STRLEN(REPLACE(?templateMotifCigarP70826MF_01980263, CONCAT('^(?:-*[^-]){', STR(((253 - ?templateMotifSequenceMatchBeginPositionP70826264) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1277) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP70826MF_01980265, 1, (STRLEN(?targetMotifMatchCigarP70826MF_01980265) - STRLEN(REPLACE(?targetMotifMatchCigarP70826MF_01980265, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1277), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP70826MF_01980265, 1, (STRLEN(?targetMotifMatchCigarP70826MF_01980265) - STRLEN(REPLACE(?targetMotifMatchCigarP70826MF_01980265, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1277), '}'), '')))), '[^-]', ''))) AS ?step2278) .
BIND(((?step2278 + ?targetMotifMatchRegionMatchBeginPositionMF_01980266) - 1) AS ?thisPositionOn65) .
BIND(?this AS ?pfs3t279) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfsb60) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn65))) AS ?pfse61) .
FILTER (REGEX('MG[RH]', SUBSTR(?thisSequenceValue, ?thisPositionOn64, (?thisPositionOn65 - ?thisPositionOn64)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01980a59')) AS ?annotation59) .
BIND(?this AS ?pfs58) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch284 faldo:location ?templateMotifSequenceMatchRegionP70826285 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP70826287 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP70826MF_01980280 .
?templateMotifSequenceMatchRegionP70826285 faldo:begin ?templateMotifSequenceMatchBeginP70826286 .
?templateMotifSequenceMatchBeginP70826286 faldo:position ?templateMotifSequenceMatchBeginPositionP70826281 ;
faldo:reference isoform:P70826-1 .
?templateMotifSequenceProfileAlignmentOperationP70826287 edam:has_input signature:MF_01980 ;
rdf:type edam:operation_0300 .
?targetMotifMatch288 faldo:location ?targetMotifMatchRegionMatch289 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01980291 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP70826MF_01980282 .
?targetMotifMatchRegionMatch289 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01980290 .
?targetMotifMatchRegionMatchBeginMF_01980290 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01980283 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01980291 edam:has_input signature:MF_01980 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP70826MF_01980280, 1, (STRLEN(?templateMotifCigarP70826MF_01980280) - STRLEN(REPLACE(?templateMotifCigarP70826MF_01980280, CONCAT('^(?:-*[^-]){', STR(((428 - ?templateMotifSequenceMatchBeginPositionP70826281) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1292) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP70826MF_01980282, 1, (STRLEN(?targetMotifMatchCigarP70826MF_01980282) - STRLEN(REPLACE(?targetMotifMatchCigarP70826MF_01980282, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1292), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP70826MF_01980282, 1, (STRLEN(?targetMotifMatchCigarP70826MF_01980282) - STRLEN(REPLACE(?targetMotifMatchCigarP70826MF_01980282, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1292), '}'), '')))), '[^-]', ''))) AS ?step2293) .
BIND(((?step2293 + ?targetMotifMatchRegionMatchBeginPositionMF_01980283) - 1) AS ?thisPositionOn72) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP70826MF_01980280, 1, (STRLEN(?templateMotifCigarP70826MF_01980280) - STRLEN(REPLACE(?templateMotifCigarP70826MF_01980280, CONCAT('^(?:-*[^-]){', STR(((431 - ?templateMotifSequenceMatchBeginPositionP70826281) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1294) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP70826MF_01980282, 1, (STRLEN(?targetMotifMatchCigarP70826MF_01980282) - STRLEN(REPLACE(?targetMotifMatchCigarP70826MF_01980282, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1294), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP70826MF_01980282, 1, (STRLEN(?targetMotifMatchCigarP70826MF_01980282) - STRLEN(REPLACE(?targetMotifMatchCigarP70826MF_01980282, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1294), '}'), '')))), '[^-]', ''))) AS ?step2295) .
BIND(((?step2295 + ?targetMotifMatchRegionMatchBeginPositionMF_01980283) - 1) AS ?thisPositionOn73) .
BIND(?this AS ?pfs3t296) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn72))) AS ?pfsb68) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfse69) .
FILTER (REGEX('[HY][ARNDCQEGHILKMFPSTWYVBZJUOX]{2)R', SUBSTR(?thisSequenceValue, ?thisPositionOn72, (?thisPositionOn73 - ?thisPositionOn72)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01980a67')) AS ?annotation67) .
BIND(?this AS ?pfs66) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch301 faldo:location ?templateMotifSequenceMatchRegionP70826302 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP70826304 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP70826MF_01980297 .
?templateMotifSequenceMatchRegionP70826302 faldo:begin ?templateMotifSequenceMatchBeginP70826303 .
?templateMotifSequenceMatchBeginP70826303 faldo:position ?templateMotifSequenceMatchBeginPositionP70826298 ;
faldo:reference isoform:P70826-1 .
?templateMotifSequenceProfileAlignmentOperationP70826304 edam:has_input signature:MF_01980 ;
rdf:type edam:operation_0300 .
?targetMotifMatch305 faldo:location ?targetMotifMatchRegionMatch306 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01980308 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP70826MF_01980299 .
?targetMotifMatchRegionMatch306 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01980307 .
?targetMotifMatchRegionMatchBeginMF_01980307 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01980300 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01980308 edam:has_input signature:MF_01980 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP70826MF_01980297, 1, (STRLEN(?templateMotifCigarP70826MF_01980297) - STRLEN(REPLACE(?templateMotifCigarP70826MF_01980297, CONCAT('^(?:-*[^-]){', STR(((206 - ?templateMotifSequenceMatchBeginPositionP70826298) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1309) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP70826MF_01980299, 1, (STRLEN(?targetMotifMatchCigarP70826MF_01980299) - STRLEN(REPLACE(?targetMotifMatchCigarP70826MF_01980299, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1309), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP70826MF_01980299, 1, (STRLEN(?targetMotifMatchCigarP70826MF_01980299) - STRLEN(REPLACE(?targetMotifMatchCigarP70826MF_01980299, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1309), '}'), '')))), '[^-]', ''))) AS ?step2310) .
BIND(((?step2310 + ?targetMotifMatchRegionMatchBeginPositionMF_01980300) - 1) AS ?thisPositionOn78) .
BIND(?thisPositionOn78 AS ?thisPositionOn79) .
BIND(?this AS ?pfs3t311) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn78))) AS ?pfsb76) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn79))) AS ?pfse77) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn78, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01980a75')) AS ?annotation75) .
BIND(?this AS ?pfs74) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch316 faldo:location ?templateMotifSequenceMatchRegionP70826317 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP70826319 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP70826MF_01980312 .
?templateMotifSequenceMatchRegionP70826317 faldo:begin ?templateMotifSequenceMatchBeginP70826318 .
?templateMotifSequenceMatchBeginP70826318 faldo:position ?templateMotifSequenceMatchBeginPositionP70826313 ;
faldo:reference isoform:P70826-1 .
?templateMotifSequenceProfileAlignmentOperationP70826319 edam:has_input signature:MF_01980 ;
rdf:type edam:operation_0300 .
?targetMotifMatch320 faldo:location ?targetMotifMatchRegionMatch321 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01980323 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP70826MF_01980314 .
?targetMotifMatchRegionMatch321 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01980322 .
?targetMotifMatchRegionMatchBeginMF_01980322 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01980315 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01980323 edam:has_input signature:MF_01980 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP70826MF_01980312, 1, (STRLEN(?templateMotifCigarP70826MF_01980312) - STRLEN(REPLACE(?templateMotifCigarP70826MF_01980312, CONCAT('^(?:-*[^-]){', STR(((176 - ?templateMotifSequenceMatchBeginPositionP70826313) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1324) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP70826MF_01980314, 1, (STRLEN(?targetMotifMatchCigarP70826MF_01980314) - STRLEN(REPLACE(?targetMotifMatchCigarP70826MF_01980314, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1324), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP70826MF_01980314, 1, (STRLEN(?targetMotifMatchCigarP70826MF_01980314) - STRLEN(REPLACE(?targetMotifMatchCigarP70826MF_01980314, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1324), '}'), '')))), '[^-]', ''))) AS ?step2325) .
BIND(((?step2325 + ?targetMotifMatchRegionMatchBeginPositionMF_01980315) - 1) AS ?thisPositionOn85) .
BIND(?thisPositionOn85 AS ?thisPositionOn86) .
BIND(?this AS ?pfs3t326) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn85))) AS ?pfsb82) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn86))) AS ?pfse83) .
FILTER (REGEX('[DE]', SUBSTR(?thisSequenceValue, ?thisPositionOn85, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01980a81')) AS ?annotation81) .
BIND(?this AS ?pfs80) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch331 faldo:location ?templateMotifSequenceMatchRegionP70826332 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP70826334 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP70826MF_01980327 .
?templateMotifSequenceMatchRegionP70826332 faldo:begin ?templateMotifSequenceMatchBeginP70826333 .
?templateMotifSequenceMatchBeginP70826333 faldo:position ?templateMotifSequenceMatchBeginPositionP70826328 ;
faldo:reference isoform:P70826-1 .
?templateMotifSequenceProfileAlignmentOperationP70826334 edam:has_input signature:MF_01980 ;
rdf:type edam:operation_0300 .
?targetMotifMatch335 faldo:location ?targetMotifMatchRegionMatch336 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01980338 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP70826MF_01980329 .
?targetMotifMatchRegionMatch336 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01980337 .
?targetMotifMatchRegionMatchBeginMF_01980337 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01980330 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01980338 edam:has_input signature:MF_01980 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP70826MF_01980327, 1, (STRLEN(?templateMotifCigarP70826MF_01980327) - STRLEN(REPLACE(?templateMotifCigarP70826MF_01980327, CONCAT('^(?:-*[^-]){', STR(((312 - ?templateMotifSequenceMatchBeginPositionP70826328) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1339) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP70826MF_01980329, 1, (STRLEN(?targetMotifMatchCigarP70826MF_01980329) - STRLEN(REPLACE(?targetMotifMatchCigarP70826MF_01980329, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1339), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP70826MF_01980329, 1, (STRLEN(?targetMotifMatchCigarP70826MF_01980329) - STRLEN(REPLACE(?targetMotifMatchCigarP70826MF_01980329, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1339), '}'), '')))), '[^-]', ''))) AS ?step2340) .
BIND(((?step2340 + ?targetMotifMatchRegionMatchBeginPositionMF_01980330) - 1) AS ?thisPositionOn93) .
BIND(?thisPositionOn93 AS ?thisPositionOn94) .
BIND(?this AS ?pfs3t341) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn93))) AS ?pfsb89) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn94))) AS ?pfse90) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn93, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01980a88')) AS ?annotation88) .
BIND(?this AS ?pfs87) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch346 faldo:location ?templateMotifSequenceMatchRegionP70826347 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP70826349 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP70826MF_01980342 .
?templateMotifSequenceMatchRegionP70826347 faldo:begin ?templateMotifSequenceMatchBeginP70826348 .
?templateMotifSequenceMatchBeginP70826348 faldo:position ?templateMotifSequenceMatchBeginPositionP70826343 ;
faldo:reference isoform:P70826-1 .
?templateMotifSequenceProfileAlignmentOperationP70826349 edam:has_input signature:MF_01980 ;
rdf:type edam:operation_0300 .
?targetMotifMatch350 faldo:location ?targetMotifMatchRegionMatch351 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01980353 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP70826MF_01980344 .
?targetMotifMatchRegionMatch351 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01980352 .
?targetMotifMatchRegionMatchBeginMF_01980352 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01980345 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01980353 edam:has_input signature:MF_01980 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP70826MF_01980342, 1, (STRLEN(?templateMotifCigarP70826MF_01980342) - STRLEN(REPLACE(?templateMotifCigarP70826MF_01980342, CONCAT('^(?:-*[^-]){', STR(((204 - ?templateMotifSequenceMatchBeginPositionP70826343) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1354) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP70826MF_01980344, 1, (STRLEN(?targetMotifMatchCigarP70826MF_01980344) - STRLEN(REPLACE(?targetMotifMatchCigarP70826MF_01980344, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1354), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP70826MF_01980344, 1, (STRLEN(?targetMotifMatchCigarP70826MF_01980344) - STRLEN(REPLACE(?targetMotifMatchCigarP70826MF_01980344, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1354), '}'), '')))), '[^-]', ''))) AS ?step2355) .
BIND(((?step2355 + ?targetMotifMatchRegionMatchBeginPositionMF_01980345) - 1) AS ?thisPositionOn101) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP70826MF_01980342, 1, (STRLEN(?templateMotifCigarP70826MF_01980342) - STRLEN(REPLACE(?templateMotifCigarP70826MF_01980342, CONCAT('^(?:-*[^-]){', STR(((206 - ?templateMotifSequenceMatchBeginPositionP70826343) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1356) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP70826MF_01980344, 1, (STRLEN(?targetMotifMatchCigarP70826MF_01980344) - STRLEN(REPLACE(?targetMotifMatchCigarP70826MF_01980344, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1356), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP70826MF_01980344, 1, (STRLEN(?targetMotifMatchCigarP70826MF_01980344) - STRLEN(REPLACE(?targetMotifMatchCigarP70826MF_01980344, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1356), '}'), '')))), '[^-]', ''))) AS ?step2357) .
BIND(((?step2357 + ?targetMotifMatchRegionMatchBeginPositionMF_01980345) - 1) AS ?thisPositionOn102) .
BIND(?this AS ?pfs4t358) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn101))) AS ?pfsb97) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn102))) AS ?pfse98) .
FILTER (REGEX('T[ARNDCQEGHILKMFPSTWYVBZJUOX]D', SUBSTR(?thisSequenceValue, ?thisPositionOn101, (?thisPositionOn102 - ?thisPositionOn101)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01980a96')) AS ?annotation96) .
BIND(?this AS ?pfs95) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch363 faldo:location ?templateMotifSequenceMatchRegionP70826364 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP70826366 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP70826MF_01980359 .
?templateMotifSequenceMatchRegionP70826364 faldo:begin ?templateMotifSequenceMatchBeginP70826365 .
?templateMotifSequenceMatchBeginP70826365 faldo:position ?templateMotifSequenceMatchBeginPositionP70826360 ;
faldo:reference isoform:P70826-1 .
?templateMotifSequenceProfileAlignmentOperationP70826366 edam:has_input signature:MF_01980 ;
rdf:type edam:operation_0300 .
?targetMotifMatch367 faldo:location ?targetMotifMatchRegionMatch368 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01980370 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP70826MF_01980361 .
?targetMotifMatchRegionMatch368 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01980369 .
?targetMotifMatchRegionMatchBeginMF_01980369 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01980362 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01980370 edam:has_input signature:MF_01980 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP70826MF_01980359, 1, (STRLEN(?templateMotifCigarP70826MF_01980359) - STRLEN(REPLACE(?templateMotifCigarP70826MF_01980359, CONCAT('^(?:-*[^-]){', STR(((243 - ?templateMotifSequenceMatchBeginPositionP70826360) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1371) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP70826MF_01980361, 1, (STRLEN(?targetMotifMatchCigarP70826MF_01980361) - STRLEN(REPLACE(?targetMotifMatchCigarP70826MF_01980361, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1371), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP70826MF_01980361, 1, (STRLEN(?targetMotifMatchCigarP70826MF_01980361) - STRLEN(REPLACE(?targetMotifMatchCigarP70826MF_01980361, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1371), '}'), '')))), '[^-]', ''))) AS ?step2372) .
BIND(((?step2372 + ?targetMotifMatchRegionMatchBeginPositionMF_01980362) - 1) AS ?thisPositionOn109) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP70826MF_01980359, 1, (STRLEN(?templateMotifCigarP70826MF_01980359) - STRLEN(REPLACE(?templateMotifCigarP70826MF_01980359, CONCAT('^(?:-*[^-]){', STR(((244 - ?templateMotifSequenceMatchBeginPositionP70826360) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1373) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP70826MF_01980361, 1, (STRLEN(?targetMotifMatchCigarP70826MF_01980361) - STRLEN(REPLACE(?targetMotifMatchCigarP70826MF_01980361, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1373), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP70826MF_01980361, 1, (STRLEN(?targetMotifMatchCigarP70826MF_01980361) - STRLEN(REPLACE(?targetMotifMatchCigarP70826MF_01980361, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1373), '}'), '')))), '[^-]', ''))) AS ?step2374) .
BIND(((?step2374 + ?targetMotifMatchRegionMatchBeginPositionMF_01980362) - 1) AS ?thisPositionOn110) .
BIND(?this AS ?pfs4t375) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn109))) AS ?pfsb105) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn110))) AS ?pfse106) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn109, (?thisPositionOn110 - ?thisPositionOn109)) = 'KY')) .
BIND(URI(CONCAT(STR(?this), '#MF_01980a104')) AS ?annotation104) .
BIND(?this AS ?pfs103) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch380 faldo:location ?templateMotifSequenceMatchRegionP70826381 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP70826383 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP70826MF_01980376 .
?templateMotifSequenceMatchRegionP70826381 faldo:begin ?templateMotifSequenceMatchBeginP70826382 .
?templateMotifSequenceMatchBeginP70826382 faldo:position ?templateMotifSequenceMatchBeginPositionP70826377 ;
faldo:reference isoform:P70826-1 .
?templateMotifSequenceProfileAlignmentOperationP70826383 edam:has_input signature:MF_01980 ;
rdf:type edam:operation_0300 .
?targetMotifMatch384 faldo:location ?targetMotifMatchRegionMatch385 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01980387 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP70826MF_01980378 .
?targetMotifMatchRegionMatch385 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01980386 .
?targetMotifMatchRegionMatchBeginMF_01980386 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01980379 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01980387 edam:has_input signature:MF_01980 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP70826MF_01980376, 1, (STRLEN(?templateMotifCigarP70826MF_01980376) - STRLEN(REPLACE(?templateMotifCigarP70826MF_01980376, CONCAT('^(?:-*[^-]){', STR(((251 - ?templateMotifSequenceMatchBeginPositionP70826377) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1388) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP70826MF_01980378, 1, (STRLEN(?targetMotifMatchCigarP70826MF_01980378) - STRLEN(REPLACE(?targetMotifMatchCigarP70826MF_01980378, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1388), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP70826MF_01980378, 1, (STRLEN(?targetMotifMatchCigarP70826MF_01980378) - STRLEN(REPLACE(?targetMotifMatchCigarP70826MF_01980378, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1388), '}'), '')))), '[^-]', ''))) AS ?step2389) .
BIND(((?step2389 + ?targetMotifMatchRegionMatchBeginPositionMF_01980379) - 1) AS ?thisPositionOn117) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP70826MF_01980376, 1, (STRLEN(?templateMotifCigarP70826MF_01980376) - STRLEN(REPLACE(?templateMotifCigarP70826MF_01980376, CONCAT('^(?:-*[^-]){', STR(((253 - ?templateMotifSequenceMatchBeginPositionP70826377) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1390) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP70826MF_01980378, 1, (STRLEN(?targetMotifMatchCigarP70826MF_01980378) - STRLEN(REPLACE(?targetMotifMatchCigarP70826MF_01980378, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1390), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP70826MF_01980378, 1, (STRLEN(?targetMotifMatchCigarP70826MF_01980378) - STRLEN(REPLACE(?targetMotifMatchCigarP70826MF_01980378, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1390), '}'), '')))), '[^-]', ''))) AS ?step2391) .
BIND(((?step2391 + ?targetMotifMatchRegionMatchBeginPositionMF_01980379) - 1) AS ?thisPositionOn118) .
BIND(?this AS ?pfs4t392) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn117))) AS ?pfsb113) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn118))) AS ?pfse114) .
FILTER (REGEX('MG[RH]', SUBSTR(?thisSequenceValue, ?thisPositionOn117, (?thisPositionOn118 - ?thisPositionOn117)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01980a112')) AS ?annotation112) .
BIND(?this AS ?pfs111) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch397 faldo:location ?templateMotifSequenceMatchRegionP70826398 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP70826400 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP70826MF_01980393 .
?templateMotifSequenceMatchRegionP70826398 faldo:begin ?templateMotifSequenceMatchBeginP70826399 .
?templateMotifSequenceMatchBeginP70826399 faldo:position ?templateMotifSequenceMatchBeginPositionP70826394 ;
faldo:reference isoform:P70826-1 .
?templateMotifSequenceProfileAlignmentOperationP70826400 edam:has_input signature:MF_01980 ;
rdf:type edam:operation_0300 .
?targetMotifMatch401 faldo:location ?targetMotifMatchRegionMatch402 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01980404 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP70826MF_01980395 .
?targetMotifMatchRegionMatch402 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01980403 .
?targetMotifMatchRegionMatchBeginMF_01980403 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01980396 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01980404 edam:has_input signature:MF_01980 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP70826MF_01980393, 1, (STRLEN(?templateMotifCigarP70826MF_01980393) - STRLEN(REPLACE(?templateMotifCigarP70826MF_01980393, CONCAT('^(?:-*[^-]){', STR(((428 - ?templateMotifSequenceMatchBeginPositionP70826394) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1405) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP70826MF_01980395, 1, (STRLEN(?targetMotifMatchCigarP70826MF_01980395) - STRLEN(REPLACE(?targetMotifMatchCigarP70826MF_01980395, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1405), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP70826MF_01980395, 1, (STRLEN(?targetMotifMatchCigarP70826MF_01980395) - STRLEN(REPLACE(?targetMotifMatchCigarP70826MF_01980395, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1405), '}'), '')))), '[^-]', ''))) AS ?step2406) .
BIND(((?step2406 + ?targetMotifMatchRegionMatchBeginPositionMF_01980396) - 1) AS ?thisPositionOn125) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP70826MF_01980393, 1, (STRLEN(?templateMotifCigarP70826MF_01980393) - STRLEN(REPLACE(?templateMotifCigarP70826MF_01980393, CONCAT('^(?:-*[^-]){', STR(((431 - ?templateMotifSequenceMatchBeginPositionP70826394) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1407) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP70826MF_01980395, 1, (STRLEN(?targetMotifMatchCigarP70826MF_01980395) - STRLEN(REPLACE(?targetMotifMatchCigarP70826MF_01980395, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1407), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP70826MF_01980395, 1, (STRLEN(?targetMotifMatchCigarP70826MF_01980395) - STRLEN(REPLACE(?targetMotifMatchCigarP70826MF_01980395, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1407), '}'), '')))), '[^-]', ''))) AS ?step2408) .
BIND(((?step2408 + ?targetMotifMatchRegionMatchBeginPositionMF_01980396) - 1) AS ?thisPositionOn126) .
BIND(?this AS ?pfs4t409) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn125))) AS ?pfsb121) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn126))) AS ?pfse122) .
FILTER (REGEX('[HY][ARNDCQEGHILKMFPSTWYVBZJUOX]{2)R', SUBSTR(?thisSequenceValue, ?thisPositionOn125, (?thisPositionOn126 - ?thisPositionOn125)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01980a120')) AS ?annotation120) .
BIND(?this AS ?pfs119) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch414 faldo:location ?templateMotifSequenceMatchRegionP70826415 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP70826417 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP70826MF_01980410 .
?templateMotifSequenceMatchRegionP70826415 faldo:begin ?templateMotifSequenceMatchBeginP70826416 .
?templateMotifSequenceMatchBeginP70826416 faldo:position ?templateMotifSequenceMatchBeginPositionP70826411 ;
faldo:reference isoform:P70826-1 .
?templateMotifSequenceProfileAlignmentOperationP70826417 edam:has_input signature:MF_01980 ;
rdf:type edam:operation_0300 .
?targetMotifMatch418 faldo:location ?targetMotifMatchRegionMatch419 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01980421 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP70826MF_01980412 .
?targetMotifMatchRegionMatch419 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01980420 .
?targetMotifMatchRegionMatchBeginMF_01980420 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01980413 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01980421 edam:has_input signature:MF_01980 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP70826MF_01980410, 1, (STRLEN(?templateMotifCigarP70826MF_01980410) - STRLEN(REPLACE(?templateMotifCigarP70826MF_01980410, CONCAT('^(?:-*[^-]){', STR(((206 - ?templateMotifSequenceMatchBeginPositionP70826411) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1422) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP70826MF_01980412, 1, (STRLEN(?targetMotifMatchCigarP70826MF_01980412) - STRLEN(REPLACE(?targetMotifMatchCigarP70826MF_01980412, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1422), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP70826MF_01980412, 1, (STRLEN(?targetMotifMatchCigarP70826MF_01980412) - STRLEN(REPLACE(?targetMotifMatchCigarP70826MF_01980412, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1422), '}'), '')))), '[^-]', ''))) AS ?step2423) .
BIND(((?step2423 + ?targetMotifMatchRegionMatchBeginPositionMF_01980413) - 1) AS ?thisPositionOn131) .
BIND(?thisPositionOn131 AS ?thisPositionOn132) .
BIND(?this AS ?pfs4t424) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn131))) AS ?pfsb129) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn132))) AS ?pfse130) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn131, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01980a128')) AS ?annotation128) .
BIND(?this AS ?pfs127) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch429 faldo:location ?templateMotifSequenceMatchRegionP70826430 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP70826432 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP70826MF_01980425 .
?templateMotifSequenceMatchRegionP70826430 faldo:begin ?templateMotifSequenceMatchBeginP70826431 .
?templateMotifSequenceMatchBeginP70826431 faldo:position ?templateMotifSequenceMatchBeginPositionP70826426 ;
faldo:reference isoform:P70826-1 .
?templateMotifSequenceProfileAlignmentOperationP70826432 edam:has_input signature:MF_01980 ;
rdf:type edam:operation_0300 .
?targetMotifMatch433 faldo:location ?targetMotifMatchRegionMatch434 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01980436 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP70826MF_01980427 .
?targetMotifMatchRegionMatch434 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01980435 .
?targetMotifMatchRegionMatchBeginMF_01980435 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01980428 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01980436 edam:has_input signature:MF_01980 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP70826MF_01980425, 1, (STRLEN(?templateMotifCigarP70826MF_01980425) - STRLEN(REPLACE(?templateMotifCigarP70826MF_01980425, CONCAT('^(?:-*[^-]){', STR(((176 - ?templateMotifSequenceMatchBeginPositionP70826426) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1437) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP70826MF_01980427, 1, (STRLEN(?targetMotifMatchCigarP70826MF_01980427) - STRLEN(REPLACE(?targetMotifMatchCigarP70826MF_01980427, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1437), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP70826MF_01980427, 1, (STRLEN(?targetMotifMatchCigarP70826MF_01980427) - STRLEN(REPLACE(?targetMotifMatchCigarP70826MF_01980427, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1437), '}'), '')))), '[^-]', ''))) AS ?step2438) .
BIND(((?step2438 + ?targetMotifMatchRegionMatchBeginPositionMF_01980428) - 1) AS ?thisPositionOn138) .
BIND(?thisPositionOn138 AS ?thisPositionOn139) .
BIND(?this AS ?pfs4t439) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn138))) AS ?pfsb135) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn139))) AS ?pfse136) .
FILTER (REGEX('[DE]', SUBSTR(?thisSequenceValue, ?thisPositionOn138, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01980a134')) AS ?annotation134) .
BIND(?this AS ?pfs133) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch444 faldo:location ?templateMotifSequenceMatchRegionP70826445 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP70826447 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP70826MF_01980440 .
?templateMotifSequenceMatchRegionP70826445 faldo:begin ?templateMotifSequenceMatchBeginP70826446 .
?templateMotifSequenceMatchBeginP70826446 faldo:position ?templateMotifSequenceMatchBeginPositionP70826441 ;
faldo:reference isoform:P70826-1 .
?templateMotifSequenceProfileAlignmentOperationP70826447 edam:has_input signature:MF_01980 ;
rdf:type edam:operation_0300 .
?targetMotifMatch448 faldo:location ?targetMotifMatchRegionMatch449 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01980451 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP70826MF_01980442 .
?targetMotifMatchRegionMatch449 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01980450 .
?targetMotifMatchRegionMatchBeginMF_01980450 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01980443 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01980451 edam:has_input signature:MF_01980 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP70826MF_01980440, 1, (STRLEN(?templateMotifCigarP70826MF_01980440) - STRLEN(REPLACE(?templateMotifCigarP70826MF_01980440, CONCAT('^(?:-*[^-]){', STR(((312 - ?templateMotifSequenceMatchBeginPositionP70826441) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1452) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP70826MF_01980442, 1, (STRLEN(?targetMotifMatchCigarP70826MF_01980442) - STRLEN(REPLACE(?targetMotifMatchCigarP70826MF_01980442, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1452), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP70826MF_01980442, 1, (STRLEN(?targetMotifMatchCigarP70826MF_01980442) - STRLEN(REPLACE(?targetMotifMatchCigarP70826MF_01980442, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1452), '}'), '')))), '[^-]', ''))) AS ?step2453) .
BIND(((?step2453 + ?targetMotifMatchRegionMatchBeginPositionMF_01980443) - 1) AS ?thisPositionOn146) .
BIND(?thisPositionOn146 AS ?thisPositionOn147) .
BIND(?this AS ?pfs4t454) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn146))) AS ?pfsb142) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn147))) AS ?pfse143) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn146, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01980a141')) AS ?annotation141) .
BIND(?this AS ?pfs140) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch459 faldo:location ?templateMotifSequenceMatchRegionP70826460 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP70826462 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP70826MF_01980455 .
?templateMotifSequenceMatchRegionP70826460 faldo:begin ?templateMotifSequenceMatchBeginP70826461 .
?templateMotifSequenceMatchBeginP70826461 faldo:position ?templateMotifSequenceMatchBeginPositionP70826456 ;
faldo:reference isoform:P70826-1 .
?templateMotifSequenceProfileAlignmentOperationP70826462 edam:has_input signature:MF_01980 ;
rdf:type edam:operation_0300 .
?targetMotifMatch463 faldo:location ?targetMotifMatchRegionMatch464 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01980466 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP70826MF_01980457 .
?targetMotifMatchRegionMatch464 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01980465 .
?targetMotifMatchRegionMatchBeginMF_01980465 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01980458 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01980466 edam:has_input signature:MF_01980 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP70826MF_01980455, 1, (STRLEN(?templateMotifCigarP70826MF_01980455) - STRLEN(REPLACE(?templateMotifCigarP70826MF_01980455, CONCAT('^(?:-*[^-]){', STR(((146 - ?templateMotifSequenceMatchBeginPositionP70826456) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1467) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP70826MF_01980457, 1, (STRLEN(?targetMotifMatchCigarP70826MF_01980457) - STRLEN(REPLACE(?targetMotifMatchCigarP70826MF_01980457, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1467), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP70826MF_01980457, 1, (STRLEN(?targetMotifMatchCigarP70826MF_01980457) - STRLEN(REPLACE(?targetMotifMatchCigarP70826MF_01980457, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1467), '}'), '')))), '[^-]', ''))) AS ?step2468) .
BIND(((?step2468 + ?targetMotifMatchRegionMatchBeginPositionMF_01980458) - 1) AS ?thisPositionOn153) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP70826MF_01980455, 1, (STRLEN(?templateMotifCigarP70826MF_01980455) - STRLEN(REPLACE(?templateMotifCigarP70826MF_01980455, CONCAT('^(?:-*[^-]){', STR(((147 - ?templateMotifSequenceMatchBeginPositionP70826456) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1469) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP70826MF_01980457, 1, (STRLEN(?targetMotifMatchCigarP70826MF_01980457) - STRLEN(REPLACE(?targetMotifMatchCigarP70826MF_01980457, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1469), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP70826MF_01980457, 1, (STRLEN(?targetMotifMatchCigarP70826MF_01980457) - STRLEN(REPLACE(?targetMotifMatchCigarP70826MF_01980457, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1469), '}'), '')))), '[^-]', ''))) AS ?step2470) .
BIND(((?step2470 + ?targetMotifMatchRegionMatchBeginPositionMF_01980458) - 1) AS ?thisPositionOn154) .
BIND(?this AS ?pfs5t471) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn153))) AS ?pfsb150) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn154))) AS ?pfse151) .
FILTER (REGEX('[RK][ARNDCQEGHILKMFPSTWYVBZJUOX]', SUBSTR(?thisSequenceValue, ?thisPositionOn153, (?thisPositionOn154 - ?thisPositionOn153)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01980a149')) AS ?annotation149) .
BIND(?this AS ?pfs148) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch476 faldo:location ?templateMotifSequenceMatchRegionP70826477 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP70826479 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP70826MF_01980472 .
?templateMotifSequenceMatchRegionP70826477 faldo:begin ?templateMotifSequenceMatchBeginP70826478 .
?templateMotifSequenceMatchBeginP70826478 faldo:position ?templateMotifSequenceMatchBeginPositionP70826473 ;
faldo:reference isoform:P70826-1 .
?templateMotifSequenceProfileAlignmentOperationP70826479 edam:has_input signature:MF_01980 ;
rdf:type edam:operation_0300 .
?targetMotifMatch480 faldo:location ?targetMotifMatchRegionMatch481 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01980483 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP70826MF_01980474 .
?targetMotifMatchRegionMatch481 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01980482 .
?targetMotifMatchRegionMatchBeginMF_01980482 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01980475 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01980483 edam:has_input signature:MF_01980 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP70826MF_01980472, 1, (STRLEN(?templateMotifCigarP70826MF_01980472) - STRLEN(REPLACE(?templateMotifCigarP70826MF_01980472, CONCAT('^(?:-*[^-]){', STR(((175 - ?templateMotifSequenceMatchBeginPositionP70826473) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1484) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP70826MF_01980474, 1, (STRLEN(?targetMotifMatchCigarP70826MF_01980474) - STRLEN(REPLACE(?targetMotifMatchCigarP70826MF_01980474, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1484), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP70826MF_01980474, 1, (STRLEN(?targetMotifMatchCigarP70826MF_01980474) - STRLEN(REPLACE(?targetMotifMatchCigarP70826MF_01980474, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1484), '}'), '')))), '[^-]', ''))) AS ?step2485) .
BIND(((?step2485 + ?targetMotifMatchRegionMatchBeginPositionMF_01980475) - 1) AS ?thisPositionOn160) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP70826MF_01980472, 1, (STRLEN(?templateMotifCigarP70826MF_01980472) - STRLEN(REPLACE(?templateMotifCigarP70826MF_01980472, CONCAT('^(?:-*[^-]){', STR(((178 - ?templateMotifSequenceMatchBeginPositionP70826473) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1486) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP70826MF_01980474, 1, (STRLEN(?targetMotifMatchCigarP70826MF_01980474) - STRLEN(REPLACE(?targetMotifMatchCigarP70826MF_01980474, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1486), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP70826MF_01980474, 1, (STRLEN(?targetMotifMatchCigarP70826MF_01980474) - STRLEN(REPLACE(?targetMotifMatchCigarP70826MF_01980474, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1486), '}'), '')))), '[^-]', ''))) AS ?step2487) .
BIND(((?step2487 + ?targetMotifMatchRegionMatchBeginPositionMF_01980475) - 1) AS ?thisPositionOn161) .
BIND(?this AS ?pfs5t488) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn160))) AS ?pfsb157) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn161))) AS ?pfse158) .
FILTER (REGEX('G[DE]G[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn160, (?thisPositionOn161 - ?thisPositionOn160)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01980a156')) AS ?annotation156) .
BIND(?this AS ?pfs155) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch493 faldo:location ?templateMotifSequenceMatchRegionP70826494 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP70826496 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP70826MF_01980489 .
?templateMotifSequenceMatchRegionP70826494 faldo:begin ?templateMotifSequenceMatchBeginP70826495 .
?templateMotifSequenceMatchBeginP70826495 faldo:position ?templateMotifSequenceMatchBeginPositionP70826490 ;
faldo:reference isoform:P70826-1 .
?templateMotifSequenceProfileAlignmentOperationP70826496 edam:has_input signature:MF_01980 ;
rdf:type edam:operation_0300 .
?targetMotifMatch497 faldo:location ?targetMotifMatchRegionMatch498 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01980500 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP70826MF_01980491 .
?targetMotifMatchRegionMatch498 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01980499 .
?targetMotifMatchRegionMatchBeginMF_01980499 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01980492 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01980500 edam:has_input signature:MF_01980 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP70826MF_01980489, 1, (STRLEN(?templateMotifCigarP70826MF_01980489) - STRLEN(REPLACE(?templateMotifCigarP70826MF_01980489, CONCAT('^(?:-*[^-]){', STR(((82 - ?templateMotifSequenceMatchBeginPositionP70826490) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1501) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP70826MF_01980491, 1, (STRLEN(?targetMotifMatchCigarP70826MF_01980491) - STRLEN(REPLACE(?targetMotifMatchCigarP70826MF_01980491, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1501), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP70826MF_01980491, 1, (STRLEN(?targetMotifMatchCigarP70826MF_01980491) - STRLEN(REPLACE(?targetMotifMatchCigarP70826MF_01980491, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1501), '}'), '')))), '[^-]', ''))) AS ?step2502) .
BIND(((?step2502 + ?targetMotifMatchRegionMatchBeginPositionMF_01980492) - 1) AS ?thisPositionOn167) .
BIND(?thisPositionOn167 AS ?thisPositionOn168) .
BIND(?this AS ?pfs5t503) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn167))) AS ?pfsb164) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn168))) AS ?pfse165) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn167, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_01980a163')) AS ?annotation163) .
BIND(?this AS ?pfs162) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag504) .
}
BIND(IF(BOUND(?tagFT_2), ?caseWithTag504, ?UNBOUND_VARIABLE) AS ?case6) .
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag505) .
BIND(URI(CONCAT(STR(?this), '#MF_01980a8')) AS ?name8) .
BIND(URI(CONCAT(STR(?this), '#MF_01980a9')) AS ?name9) .
BIND(URI(CONCAT(STR(?this), '#MF_01980a10')) AS ?name10) .
BIND(URI(CONCAT(STR(?this), '#MF_01980a11')) AS ?name11) .
}
BIND(IF(BOUND(?tagFT_1), ?caseWithTag505, ?UNBOUND_VARIABLE) AS ?case7) .
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag506) .
BIND(URI(CONCAT(STR(?this), '#MF_01980a13')) AS ?name13) .
BIND(URI(CONCAT(STR(?this), '#MF_01980a14')) AS ?name14) .
}
BIND(IF((BOUND(?tagFT_2) || BOUND(?tagFT_1)), ?caseWithTag506, ?UNBOUND_VARIABLE) AS ?case12) .
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag507) .
BIND(URI(CONCAT(STR(?this), '#MF_01980a16')) AS ?name16) .
}
BIND(IF((BOUND(?tagFT_2) || BOUND(?tagFT_1)), ?caseWithTag507, ?UNBOUND_VARIABLE) AS ?case15) .
}
"xsd:string |
