| http://purl.uniprot.org/unirules/MF_03019#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:789592 up:source unirule:MF_03019 .
_:789593 up:source unirule:MF_03019 .
_:789594 up:source unirule:MF_03019 .
_:789595 up:source unirule:MF_03019 .
_:789596 up:source unirule:MF_03019 .
_:789597 up:source unirule:MF_03019 .
_:789598 up:source unirule:MF_03019 .
_:789599 up:source unirule:MF_03019 .
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?this up:annotation ?annotation0 ,
?annotation1 ,
?annotation3 ,
?annotation4 ,
?annotation6 ;
up:classifiedWith GO:0000334 ,
GO:0006569 ,
GO:0008198 ,
GO:0019805 ,
GO:0034354 ,
GO:0043420 ,
keyword:223 ,
keyword:560 ,
keyword:662 .
?annotation0 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the oxidative ring opening of 3-hydroxyanthranilate to 2-amino-3-carboxymuconate semialdehyde, which spontaneously cyclizes to quinolinate.' .
?annotation1 up:activity ?activity2 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity2 up:catalyticActivity ;
up:enzymeClass .
?annotation3 a up:Pathway_Annotation ;
rdfs:comment 'Cofactor biosynthesis; NAD(+) biosynthesis; quinolinate from L-kynurenine: step 3/3.' .
?annotation4 a up:Subcellular_Location_Annotation .
?annotation4li5 up:cellularComponent .
?annotation6 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the 3-HAO family.' .
?case7 up:alternativeName ?name9 ,
?name10 ,
?name11 ;
up:recommendedName ?name8 .
?name8 up:ecName '1.13.11.6' ;
up:fullName '3-hydroxyanthranilate 3,4-dioxygenase' ;
rdf:type up:Structured_Name .
?name9 up:fullName '3-hydroxyanthranilate oxygenase' ;
up:shortName '3-HAO' ;
rdf:type up:Structured_Name .
?name10 up:fullName '3-hydroxyanthranilic acid dioxygenase' ;
up:shortName 'HAD' ;
rdf:type up:Structured_Name .
?name11 up:fullName 'Biosynthesis of nicotinic acid protein 1' ;
rdf:type up:Structured_Name .
?case12 up:classifiedWith GO:0005737 ,
keyword:963 .
?case14 up:alternativeName ?name16 ,
?name17 ;
up:recommendedName ?name15 .
?name15 up:ecName '1.13.11.6' ;
up:fullName '3-hydroxyanthranilate 3,4-dioxygenase' ;
rdf:type up:Structured_Name .
?name16 up:fullName '3-hydroxyanthranilate oxygenase' ;
up:shortName '3-HAO' ;
rdf:type up:Structured_Name .
?name17 up:fullName '3-hydroxyanthranilic acid dioxygenase' ;
up:shortName 'HAD' ;
rdf:type up:Structured_Name .
?case18 up:classifiedWith keyword:408 .
?case19 up:classifiedWith keyword:479 .
?pfs20 up:annotation ?annotation21 ,
?annotation27 ,
?annotation33 ,
?annotation39 .
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faldo:end ?pfse23 ;
up:ligand ?ligand24 ;
rdf:type up:Binding_Site_Annotation .
?pfsb22 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?pfse23 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?ligand24 rdfs:subClassOf chebi:60240 .
?annotation27 faldo:begin ?pfsb28 ;
faldo:end ?pfse29 ;
up:ligand ?ligand30 ;
rdf:type up:Binding_Site_Annotation .
?pfsb28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?pfse29 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?ligand30 rdfs:subClassOf chebi:60240 .
?annotation33 faldo:begin ?pfsb34 ;
faldo:end ?pfse35 ;
up:ligand ?ligand36 ;
rdf:type up:Binding_Site_Annotation .
?pfsb34 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?pfse35 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?ligand36 rdfs:subClassOf chebi:60240 .
?annotation39 faldo:begin ?pfsb40 ;
faldo:end ?pfse41 ;
up:ligand ?ligand42 ;
rdf:type up:Binding_Site_Annotation .
?pfsb40 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?pfse41 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?ligand42 rdfs:subClassOf chebi:60240 .
?pfs45 up:annotation ?annotation46 ,
?annotation52 ,
?annotation58 .
?annotation46 faldo:begin ?pfsb47 ;
faldo:end ?pfse48 ;
up:ligand ?ligand49 ;
rdf:type up:Binding_Site_Annotation .
?pfsb47 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?pfse48 faldo:position ?thisPositionOn51 ;
rdf:type faldo:ExactPosition .
?ligand49 rdfs:subClassOf chebi:24875 .
?annotation52 faldo:begin ?pfsb53 ;
faldo:end ?pfse54 ;
up:ligand ?ligand55 ;
rdf:type up:Binding_Site_Annotation .
?pfsb53 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?pfse54 faldo:position ?thisPositionOn57 ;
rdf:type faldo:ExactPosition .
?ligand55 rdfs:subClassOf chebi:24875 .
?annotation58 faldo:begin ?pfsb59 ;
faldo:end ?pfse60 ;
up:ligand ?ligand61 ;
rdf:type up:Binding_Site_Annotation .
?pfsb59 faldo:position ?thisPositionOn62 ;
rdf:type faldo:ExactPosition .
?pfse60 faldo:position ?thisPositionOn63 ;
rdf:type faldo:ExactPosition .
?ligand61 rdfs:subClassOf chebi:24875 .
?pfs64 up:annotation ?annotation65 ,
?annotation71 ,
?annotation77 .
?annotation65 faldo:begin ?pfsb66 ;
faldo:end ?pfse67 ;
up:ligand ?ligand68 ;
rdf:type up:Binding_Site_Annotation .
?pfsb66 faldo:position ?thisPositionOn69 ;
rdf:type faldo:ExactPosition .
?pfse67 faldo:position ?thisPositionOn70 ;
rdf:type faldo:ExactPosition .
?ligand68 rdfs:subClassOf chebi:24875 .
?annotation71 faldo:begin ?pfsb72 ;
faldo:end ?pfse73 ;
up:ligand ?ligand74 ;
rdf:type up:Binding_Site_Annotation .
?pfsb72 faldo:position ?thisPositionOn75 ;
rdf:type faldo:ExactPosition .
?pfse73 faldo:position ?thisPositionOn76 ;
rdf:type faldo:ExactPosition .
?ligand74 rdfs:subClassOf chebi:24875 .
?annotation77 faldo:begin ?pfsb78 ;
faldo:end ?pfse79 ;
up:ligand ?ligand80 ;
rdf:type up:Binding_Site_Annotation .
?pfsb78 faldo:position ?thisPositionOn81 ;
rdf:type faldo:ExactPosition .
?pfse79 faldo:position ?thisPositionOn82 ;
rdf:type faldo:ExactPosition .
?ligand80 rdfs:subClassOf chebi:24875 .
?pfs83 up:annotation ?annotation84 .
?annotation84 faldo:begin ?pfsb85 ;
faldo:end ?pfse86 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Domain A (catalytic)' .
?pfsb85 faldo:position ?thisPositionOn87 ;
rdf:type faldo:ExactPosition .
?pfse86 faldo:position ?thisPositionOn88 ;
rdf:type faldo:ExactPosition .
?pfs89 up:annotation ?annotation90 .
?annotation90 faldo:begin ?pfsb91 ;
faldo:end ?pfse92 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Linker' .
?pfsb91 faldo:position ?thisPositionOn93 ;
rdf:type faldo:ExactPosition .
?pfse92 faldo:position ?thisPositionOn94 ;
rdf:type faldo:ExactPosition .
?pfs95 up:annotation ?annotation96 .
?annotation96 faldo:begin ?pfsb97 ;
faldo:end ?pfse98 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Domain B' .
?pfsb97 faldo:position ?thisPositionOn99 ;
rdf:type faldo:ExactPosition .
?pfse98 faldo:position ?thisPositionOn100 ;
rdf:type faldo:ExactPosition .
?pfs101 up:annotation ?annotation102 .
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faldo:end ?pfse104 ;
up:ligand ?ligand105 ;
rdf:type up:Binding_Site_Annotation .
?pfsb103 faldo:position ?thisPositionOn106 ;
rdf:type faldo:ExactPosition .
?pfse104 faldo:position ?thisPositionOn107 ;
rdf:type faldo:ExactPosition .
?ligand105 rdfs:subClassOf chebi:15379 .
?pfs108 up:annotation ?annotation109 .
?annotation109 faldo:begin ?pfsb110 ;
faldo:end ?pfse111 ;
up:ligand ?ligand112 ;
rdf:type up:Binding_Site_Annotation .
?pfsb110 faldo:position ?thisPositionOn114 ;
rdf:type faldo:ExactPosition .
?pfse111 faldo:position ?thisPositionOn115 ;
rdf:type faldo:ExactPosition .
?ligand112 rdfs:subClassOf ?molecule113 .
?molecule113 rdfs:label 'substrate' .
?pfs116 up:annotation ?annotation117 .
?annotation117 faldo:begin ?pfsb118 ;
faldo:end ?pfse119 ;
up:ligand ?ligand120 ;
rdf:type up:Binding_Site_Annotation .
?pfsb118 faldo:position ?thisPositionOn122 ;
rdf:type faldo:ExactPosition .
?pfse119 faldo:position ?thisPositionOn123 ;
rdf:type faldo:ExactPosition .
?ligand120 rdfs:subClassOf ?molecule121 .
?molecule121 rdfs:label 'substrate' .
?pfs124 up:annotation ?annotation125 .
?annotation125 faldo:begin ?pfsb126 ;
faldo:end ?pfse127 ;
up:ligand ?ligand128 ;
rdf:type up:Binding_Site_Annotation .
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rdf:type faldo:ExactPosition .
?pfse127 faldo:position ?thisPositionOn131 ;
rdf:type faldo:ExactPosition .
?ligand128 rdfs:subClassOf ?molecule129 .
?molecule129 rdfs:label 'substrate' .
?pfs132 up:annotation ?annotation133 .
?annotation133 faldo:begin ?pfsb134 ;
faldo:end ?pfse135 ;
up:ligand ?ligand136 ;
rdf:type up:Binding_Site_Annotation .
?pfsb134 faldo:position ?thisPositionOn137 ;
rdf:type faldo:ExactPosition .
?pfse135 faldo:position ?thisPositionOn138 ;
rdf:type faldo:ExactPosition .
?ligand136 rdfs:subClassOf chebi:15379 .
?pfs139 up:annotation ?annotation140 .
?annotation140 faldo:begin ?pfsb141 ;
faldo:end ?pfse142 ;
up:ligand ?ligand143 ;
rdf:type up:Binding_Site_Annotation .
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rdf:type faldo:ExactPosition .
?pfse142 faldo:position ?thisPositionOn146 ;
rdf:type faldo:ExactPosition .
?ligand143 rdfs:subClassOf ?molecule144 .
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?pfs147 up:annotation ?annotation148 .
?annotation148 faldo:begin ?pfsb149 ;
faldo:end ?pfse150 ;
up:ligand ?ligand151 ;
rdf:type up:Binding_Site_Annotation .
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rdf:type faldo:ExactPosition .
?pfse150 faldo:position ?thisPositionOn154 ;
rdf:type faldo:ExactPosition .
?ligand151 rdfs:subClassOf ?molecule152 .
?molecule152 rdfs:label 'substrate' .
?pfs155 up:annotation ?annotation156 .
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faldo:end ?pfse158 ;
up:ligand ?ligand159 ;
rdf:type up:Binding_Site_Annotation .
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rdf:type faldo:ExactPosition .
?pfse158 faldo:position ?thisPositionOn162 ;
rdf:type faldo:ExactPosition .
?ligand159 rdfs:subClassOf ?molecule160 .
?molecule160 rdfs:label 'substrate' .
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rdf:object GO:0034354 .
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rdf:subject ?pfs147 ;
rdf:predicate up:annotation ;
rdf:object ?annotation148 .
_:789702 a rdf:Statement ;
up:attribution _:789636 ;
rdf:subject ?pfs147 ;
rdf:predicate up:annotation ;
rdf:object ?annotation148 .
_:789703 a rdf:Statement ;
up:source unirule:MF_03019 ;
rdf:subject ?pfs155 ;
rdf:predicate up:annotation ;
rdf:object ?annotation156 .
_:789704 a rdf:Statement ;
up:attribution _:789637 ;
rdf:subject ?pfs155 ;
rdf:predicate up:annotation ;
rdf:object ?annotation156 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_03019
#Rule MF_03019 Created by:? on:2009-02-12 Modified by:Catherine Rivoire on:2025-06-13
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00825 .
?thisOrganism rdfs:subClassOf+ taxon:2759 .
BIND(URI(CONCAT(STR(?this), '#MF_03019a0')) AS ?annotation0) .
BIND(URI(CONCAT(STR(?this), '#MF_03019a1')) AS ?annotation1) .
BIND(URI(CONCAT(STR(?this), '#MF_03019a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_03019a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_03019a6')) AS ?annotation6) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch167 faldo:location ?templateMotifSequenceMatchRegionP47096168 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP47096170 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP47096MF_00825163 .
?templateMotifSequenceMatchRegionP47096168 faldo:begin ?templateMotifSequenceMatchBeginP47096169 .
?templateMotifSequenceMatchBeginP47096169 faldo:position ?templateMotifSequenceMatchBeginPositionP47096164 ;
faldo:reference isoform:P47096-1 .
?templateMotifSequenceProfileAlignmentOperationP47096170 edam:has_input signature:MF_00825 ;
rdf:type edam:operation_0300 .
?targetMotifMatch171 faldo:location ?targetMotifMatchRegionMatch172 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00825174 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP47096MF_00825165 .
?targetMotifMatchRegionMatch172 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00825173 .
?targetMotifMatchRegionMatchBeginMF_00825173 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00825166 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00825174 edam:has_input signature:MF_00825 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_3) .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:4751 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP47096MF_00825163, 1, (STRLEN(?templateMotifCigarP47096MF_00825163) - STRLEN(REPLACE(?templateMotifCigarP47096MF_00825163, CONCAT('^(?:-*[^-]){', STR(((126 - ?templateMotifSequenceMatchBeginPositionP47096164) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1175) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP47096MF_00825165, 1, (STRLEN(?targetMotifMatchCigarP47096MF_00825165) - STRLEN(REPLACE(?targetMotifMatchCigarP47096MF_00825165, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1175), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP47096MF_00825165, 1, (STRLEN(?targetMotifMatchCigarP47096MF_00825165) - STRLEN(REPLACE(?targetMotifMatchCigarP47096MF_00825165, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1175), '}'), '')))), '[^-]', ''))) AS ?step2176) .
BIND(((?step2176 + ?targetMotifMatchRegionMatchBeginPositionMF_00825166) - 1) AS ?thisPositionOn25) .
BIND(?thisPositionOn25 AS ?thisPositionOn26) .
BIND(?this AS ?pfs1t177) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfsb22) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfse23) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn25, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP47096MF_00825163, 1, (STRLEN(?templateMotifCigarP47096MF_00825163) - STRLEN(REPLACE(?templateMotifCigarP47096MF_00825163, CONCAT('^(?:-*[^-]){', STR(((129 - ?templateMotifSequenceMatchBeginPositionP47096164) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1178) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP47096MF_00825165, 1, (STRLEN(?targetMotifMatchCigarP47096MF_00825165) - STRLEN(REPLACE(?targetMotifMatchCigarP47096MF_00825165, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1178), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP47096MF_00825165, 1, (STRLEN(?targetMotifMatchCigarP47096MF_00825165) - STRLEN(REPLACE(?targetMotifMatchCigarP47096MF_00825165, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1178), '}'), '')))), '[^-]', ''))) AS ?step2179) .
BIND(((?step2179 + ?targetMotifMatchRegionMatchBeginPositionMF_00825166) - 1) AS ?thisPositionOn31) .
BIND(?thisPositionOn31 AS ?thisPositionOn32) .
BIND(?this AS ?pfs1t180) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb28) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse29) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn31, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP47096MF_00825163, 1, (STRLEN(?templateMotifCigarP47096MF_00825163) - STRLEN(REPLACE(?templateMotifCigarP47096MF_00825163, CONCAT('^(?:-*[^-]){', STR(((163 - ?templateMotifSequenceMatchBeginPositionP47096164) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1181) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP47096MF_00825165, 1, (STRLEN(?targetMotifMatchCigarP47096MF_00825165) - STRLEN(REPLACE(?targetMotifMatchCigarP47096MF_00825165, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1181), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP47096MF_00825165, 1, (STRLEN(?targetMotifMatchCigarP47096MF_00825165) - STRLEN(REPLACE(?targetMotifMatchCigarP47096MF_00825165, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1181), '}'), '')))), '[^-]', ''))) AS ?step2182) .
BIND(((?step2182 + ?targetMotifMatchRegionMatchBeginPositionMF_00825166) - 1) AS ?thisPositionOn37) .
BIND(?thisPositionOn37 AS ?thisPositionOn38) .
BIND(?this AS ?pfs1t183) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfsb34) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfse35) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn37, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP47096MF_00825163, 1, (STRLEN(?templateMotifCigarP47096MF_00825163) - STRLEN(REPLACE(?templateMotifCigarP47096MF_00825163, CONCAT('^(?:-*[^-]){', STR(((166 - ?templateMotifSequenceMatchBeginPositionP47096164) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1184) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP47096MF_00825165, 1, (STRLEN(?targetMotifMatchCigarP47096MF_00825165) - STRLEN(REPLACE(?targetMotifMatchCigarP47096MF_00825165, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1184), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP47096MF_00825165, 1, (STRLEN(?targetMotifMatchCigarP47096MF_00825165) - STRLEN(REPLACE(?targetMotifMatchCigarP47096MF_00825165, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1184), '}'), '')))), '[^-]', ''))) AS ?step2185) .
BIND(((?step2185 + ?targetMotifMatchRegionMatchBeginPositionMF_00825166) - 1) AS ?thisPositionOn43) .
BIND(?thisPositionOn43 AS ?thisPositionOn44) .
BIND(?this AS ?pfs1t186) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfsb40) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfse41) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn43, 1) = 'C')) .
BIND(?this AS ?pfs20) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch191 faldo:location ?templateMotifSequenceMatchRegionP47096192 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP47096194 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP47096MF_00825187 .
?templateMotifSequenceMatchRegionP47096192 faldo:begin ?templateMotifSequenceMatchBeginP47096193 .
?templateMotifSequenceMatchBeginP47096193 faldo:position ?templateMotifSequenceMatchBeginPositionP47096188 ;
faldo:reference isoform:P47096-1 .
?templateMotifSequenceProfileAlignmentOperationP47096194 edam:has_input signature:MF_00825 ;
rdf:type edam:operation_0300 .
?targetMotifMatch195 faldo:location ?targetMotifMatchRegionMatch196 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00825198 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP47096MF_00825189 .
?targetMotifMatchRegionMatch196 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00825197 .
?targetMotifMatchRegionMatchBeginMF_00825197 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00825190 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00825198 edam:has_input signature:MF_00825 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_2) .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:4751 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP47096MF_00825187, 1, (STRLEN(?templateMotifCigarP47096MF_00825187) - STRLEN(REPLACE(?templateMotifCigarP47096MF_00825187, CONCAT('^(?:-*[^-]){', STR(((49 - ?templateMotifSequenceMatchBeginPositionP47096188) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1199) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP47096MF_00825189, 1, (STRLEN(?targetMotifMatchCigarP47096MF_00825189) - STRLEN(REPLACE(?targetMotifMatchCigarP47096MF_00825189, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1199), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP47096MF_00825189, 1, (STRLEN(?targetMotifMatchCigarP47096MF_00825189) - STRLEN(REPLACE(?targetMotifMatchCigarP47096MF_00825189, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1199), '}'), '')))), '[^-]', ''))) AS ?step2200) .
BIND(((?step2200 + ?targetMotifMatchRegionMatchBeginPositionMF_00825190) - 1) AS ?thisPositionOn50) .
BIND(?thisPositionOn50 AS ?thisPositionOn51) .
BIND(?this AS ?pfs2t201) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfsb47) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfse48) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn50, 1) = 'H')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP47096MF_00825187, 1, (STRLEN(?templateMotifCigarP47096MF_00825187) - STRLEN(REPLACE(?templateMotifCigarP47096MF_00825187, CONCAT('^(?:-*[^-]){', STR(((55 - ?templateMotifSequenceMatchBeginPositionP47096188) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1202) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP47096MF_00825189, 1, (STRLEN(?targetMotifMatchCigarP47096MF_00825189) - STRLEN(REPLACE(?targetMotifMatchCigarP47096MF_00825189, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1202), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP47096MF_00825189, 1, (STRLEN(?targetMotifMatchCigarP47096MF_00825189) - STRLEN(REPLACE(?targetMotifMatchCigarP47096MF_00825189, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1202), '}'), '')))), '[^-]', ''))) AS ?step2203) .
BIND(((?step2203 + ?targetMotifMatchRegionMatchBeginPositionMF_00825190) - 1) AS ?thisPositionOn56) .
BIND(?thisPositionOn56 AS ?thisPositionOn57) .
BIND(?this AS ?pfs2t204) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfsb53) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfse54) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn56, 1) = 'E')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP47096MF_00825187, 1, (STRLEN(?templateMotifCigarP47096MF_00825187) - STRLEN(REPLACE(?templateMotifCigarP47096MF_00825187, CONCAT('^(?:-*[^-]){', STR(((97 - ?templateMotifSequenceMatchBeginPositionP47096188) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1205) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP47096MF_00825189, 1, (STRLEN(?targetMotifMatchCigarP47096MF_00825189) - STRLEN(REPLACE(?targetMotifMatchCigarP47096MF_00825189, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1205), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP47096MF_00825189, 1, (STRLEN(?targetMotifMatchCigarP47096MF_00825189) - STRLEN(REPLACE(?targetMotifMatchCigarP47096MF_00825189, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1205), '}'), '')))), '[^-]', ''))) AS ?step2206) .
BIND(((?step2206 + ?targetMotifMatchRegionMatchBeginPositionMF_00825190) - 1) AS ?thisPositionOn62) .
BIND(?thisPositionOn62 AS ?thisPositionOn63) .
BIND(?this AS ?pfs2t207) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfsb59) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfse60) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn62, 1) = 'H')) .
BIND(?this AS ?pfs45) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch212 faldo:location ?templateMotifSequenceMatchRegionQ0VCA8213 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ0VCA8215 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ0VCA8MF_00825208 .
?templateMotifSequenceMatchRegionQ0VCA8213 faldo:begin ?templateMotifSequenceMatchBeginQ0VCA8214 .
?templateMotifSequenceMatchBeginQ0VCA8214 faldo:position ?templateMotifSequenceMatchBeginPositionQ0VCA8209 ;
faldo:reference isoform:Q0VCA8-1 .
?templateMotifSequenceProfileAlignmentOperationQ0VCA8215 edam:has_input signature:MF_00825 ;
rdf:type edam:operation_0300 .
?targetMotifMatch216 faldo:location ?targetMotifMatchRegionMatch217 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00825219 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ0VCA8MF_00825210 .
?targetMotifMatchRegionMatch217 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00825218 .
?targetMotifMatchRegionMatchBeginMF_00825218 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00825211 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00825219 edam:has_input signature:MF_00825 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:33208 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ0VCA8MF_00825208, 1, (STRLEN(?templateMotifCigarQ0VCA8MF_00825208) - STRLEN(REPLACE(?templateMotifCigarQ0VCA8MF_00825208, CONCAT('^(?:-*[^-]){', STR(((47 - ?templateMotifSequenceMatchBeginPositionQ0VCA8209) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1220) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ0VCA8MF_00825210, 1, (STRLEN(?targetMotifMatchCigarQ0VCA8MF_00825210) - STRLEN(REPLACE(?targetMotifMatchCigarQ0VCA8MF_00825210, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1220), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ0VCA8MF_00825210, 1, (STRLEN(?targetMotifMatchCigarQ0VCA8MF_00825210) - STRLEN(REPLACE(?targetMotifMatchCigarQ0VCA8MF_00825210, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1220), '}'), '')))), '[^-]', ''))) AS ?step2221) .
BIND(((?step2221 + ?targetMotifMatchRegionMatchBeginPositionMF_00825211) - 1) AS ?thisPositionOn69) .
BIND(?thisPositionOn69 AS ?thisPositionOn70) .
BIND(?this AS ?pfs3t222) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn69))) AS ?pfsb66) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn70))) AS ?pfse67) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn69, 1) = 'H')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ0VCA8MF_00825208, 1, (STRLEN(?templateMotifCigarQ0VCA8MF_00825208) - STRLEN(REPLACE(?templateMotifCigarQ0VCA8MF_00825208, CONCAT('^(?:-*[^-]){', STR(((53 - ?templateMotifSequenceMatchBeginPositionQ0VCA8209) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1223) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ0VCA8MF_00825210, 1, (STRLEN(?targetMotifMatchCigarQ0VCA8MF_00825210) - STRLEN(REPLACE(?targetMotifMatchCigarQ0VCA8MF_00825210, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1223), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ0VCA8MF_00825210, 1, (STRLEN(?targetMotifMatchCigarQ0VCA8MF_00825210) - STRLEN(REPLACE(?targetMotifMatchCigarQ0VCA8MF_00825210, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1223), '}'), '')))), '[^-]', ''))) AS ?step2224) .
BIND(((?step2224 + ?targetMotifMatchRegionMatchBeginPositionMF_00825211) - 1) AS ?thisPositionOn75) .
BIND(?thisPositionOn75 AS ?thisPositionOn76) .
BIND(?this AS ?pfs3t225) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn75))) AS ?pfsb72) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn76))) AS ?pfse73) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn75, 1) = 'E')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ0VCA8MF_00825208, 1, (STRLEN(?templateMotifCigarQ0VCA8MF_00825208) - STRLEN(REPLACE(?templateMotifCigarQ0VCA8MF_00825208, CONCAT('^(?:-*[^-]){', STR(((91 - ?templateMotifSequenceMatchBeginPositionQ0VCA8209) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1226) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ0VCA8MF_00825210, 1, (STRLEN(?targetMotifMatchCigarQ0VCA8MF_00825210) - STRLEN(REPLACE(?targetMotifMatchCigarQ0VCA8MF_00825210, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1226), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ0VCA8MF_00825210, 1, (STRLEN(?targetMotifMatchCigarQ0VCA8MF_00825210) - STRLEN(REPLACE(?targetMotifMatchCigarQ0VCA8MF_00825210, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1226), '}'), '')))), '[^-]', ''))) AS ?step2227) .
BIND(((?step2227 + ?targetMotifMatchRegionMatchBeginPositionMF_00825211) - 1) AS ?thisPositionOn81) .
BIND(?thisPositionOn81 AS ?thisPositionOn82) .
BIND(?this AS ?pfs3t228) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn81))) AS ?pfsb78) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn82))) AS ?pfse79) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn81, 1) = 'H')) .
BIND(?this AS ?pfs64) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch233 faldo:location ?templateMotifSequenceMatchRegionQ0VCA8234 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ0VCA8236 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ0VCA8MF_00825229 .
?templateMotifSequenceMatchRegionQ0VCA8234 faldo:begin ?templateMotifSequenceMatchBeginQ0VCA8235 .
?templateMotifSequenceMatchBeginQ0VCA8235 faldo:position ?templateMotifSequenceMatchBeginPositionQ0VCA8230 ;
faldo:reference isoform:Q0VCA8-1 .
?templateMotifSequenceProfileAlignmentOperationQ0VCA8236 edam:has_input signature:MF_00825 ;
rdf:type edam:operation_0300 .
?targetMotifMatch237 faldo:location ?targetMotifMatchRegionMatch238 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00825240 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ0VCA8MF_00825231 .
?targetMotifMatchRegionMatch238 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00825239 .
?targetMotifMatchRegionMatchBeginMF_00825239 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00825232 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00825240 edam:has_input signature:MF_00825 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:33208 .
BIND(1 AS ?thisPositionOn87) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ0VCA8MF_00825229, 1, (STRLEN(?templateMotifCigarQ0VCA8MF_00825229) - STRLEN(REPLACE(?templateMotifCigarQ0VCA8MF_00825229, CONCAT('^(?:-*[^-]){', STR(((160 - ?templateMotifSequenceMatchBeginPositionQ0VCA8230) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1241) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ0VCA8MF_00825231, 1, (STRLEN(?targetMotifMatchCigarQ0VCA8MF_00825231) - STRLEN(REPLACE(?targetMotifMatchCigarQ0VCA8MF_00825231, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1241), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ0VCA8MF_00825231, 1, (STRLEN(?targetMotifMatchCigarQ0VCA8MF_00825231) - STRLEN(REPLACE(?targetMotifMatchCigarQ0VCA8MF_00825231, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1241), '}'), '')))), '[^-]', ''))) AS ?step2242) .
BIND(((?step2242 + ?targetMotifMatchRegionMatchBeginPositionMF_00825232) - 1) AS ?thisPositionOn88) .
BIND(?this AS ?pfs4t243) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn87))) AS ?pfsb85) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn88))) AS ?pfse86) .
FILTER ((BOUND(?thisPositionOn87) && BOUND(?thisPositionOn88))) .
BIND(URI(CONCAT(STR(?this), '#MF_03019a84')) AS ?annotation84) .
BIND(?this AS ?pfs83) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch248 faldo:location ?templateMotifSequenceMatchRegionQ0VCA8249 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ0VCA8251 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ0VCA8MF_00825244 .
?templateMotifSequenceMatchRegionQ0VCA8249 faldo:begin ?templateMotifSequenceMatchBeginQ0VCA8250 .
?templateMotifSequenceMatchBeginQ0VCA8250 faldo:position ?templateMotifSequenceMatchBeginPositionQ0VCA8245 ;
faldo:reference isoform:Q0VCA8-1 .
?templateMotifSequenceProfileAlignmentOperationQ0VCA8251 edam:has_input signature:MF_00825 ;
rdf:type edam:operation_0300 .
?targetMotifMatch252 faldo:location ?targetMotifMatchRegionMatch253 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00825255 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ0VCA8MF_00825246 .
?targetMotifMatchRegionMatch253 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00825254 .
?targetMotifMatchRegionMatchBeginMF_00825254 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00825247 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00825255 edam:has_input signature:MF_00825 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:33208 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ0VCA8MF_00825244, 1, (STRLEN(?templateMotifCigarQ0VCA8MF_00825244) - STRLEN(REPLACE(?templateMotifCigarQ0VCA8MF_00825244, CONCAT('^(?:-*[^-]){', STR(((161 - ?templateMotifSequenceMatchBeginPositionQ0VCA8245) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1256) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ0VCA8MF_00825246, 1, (STRLEN(?targetMotifMatchCigarQ0VCA8MF_00825246) - STRLEN(REPLACE(?targetMotifMatchCigarQ0VCA8MF_00825246, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1256), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ0VCA8MF_00825246, 1, (STRLEN(?targetMotifMatchCigarQ0VCA8MF_00825246) - STRLEN(REPLACE(?targetMotifMatchCigarQ0VCA8MF_00825246, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1256), '}'), '')))), '[^-]', ''))) AS ?step2257) .
BIND(((?step2257 + ?targetMotifMatchRegionMatchBeginPositionMF_00825247) - 1) AS ?thisPositionOn93) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ0VCA8MF_00825244, 1, (STRLEN(?templateMotifCigarQ0VCA8MF_00825244) - STRLEN(REPLACE(?templateMotifCigarQ0VCA8MF_00825244, CONCAT('^(?:-*[^-]){', STR(((177 - ?templateMotifSequenceMatchBeginPositionQ0VCA8245) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1258) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ0VCA8MF_00825246, 1, (STRLEN(?targetMotifMatchCigarQ0VCA8MF_00825246) - STRLEN(REPLACE(?targetMotifMatchCigarQ0VCA8MF_00825246, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1258), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ0VCA8MF_00825246, 1, (STRLEN(?targetMotifMatchCigarQ0VCA8MF_00825246) - STRLEN(REPLACE(?targetMotifMatchCigarQ0VCA8MF_00825246, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1258), '}'), '')))), '[^-]', ''))) AS ?step2259) .
BIND(((?step2259 + ?targetMotifMatchRegionMatchBeginPositionMF_00825247) - 1) AS ?thisPositionOn94) .
BIND(?this AS ?pfs4t260) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn93))) AS ?pfsb91) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn94))) AS ?pfse92) .
FILTER ((BOUND(?thisPositionOn93) && BOUND(?thisPositionOn94))) .
BIND(URI(CONCAT(STR(?this), '#MF_03019a90')) AS ?annotation90) .
BIND(?this AS ?pfs89) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch265 faldo:location ?templateMotifSequenceMatchRegionQ0VCA8266 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ0VCA8268 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ0VCA8MF_00825261 .
?templateMotifSequenceMatchRegionQ0VCA8266 faldo:begin ?templateMotifSequenceMatchBeginQ0VCA8267 .
?templateMotifSequenceMatchBeginQ0VCA8267 faldo:position ?templateMotifSequenceMatchBeginPositionQ0VCA8262 ;
faldo:reference isoform:Q0VCA8-1 .
?templateMotifSequenceProfileAlignmentOperationQ0VCA8268 edam:has_input signature:MF_00825 ;
rdf:type edam:operation_0300 .
?targetMotifMatch269 faldo:location ?targetMotifMatchRegionMatch270 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00825272 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ0VCA8MF_00825263 .
?targetMotifMatchRegionMatch270 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00825271 .
?targetMotifMatchRegionMatchBeginMF_00825271 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00825264 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00825272 edam:has_input signature:MF_00825 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:33208 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ0VCA8MF_00825261, 1, (STRLEN(?templateMotifCigarQ0VCA8MF_00825261) - STRLEN(REPLACE(?templateMotifCigarQ0VCA8MF_00825261, CONCAT('^(?:-*[^-]){', STR(((178 - ?templateMotifSequenceMatchBeginPositionQ0VCA8262) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1273) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ0VCA8MF_00825263, 1, (STRLEN(?targetMotifMatchCigarQ0VCA8MF_00825263) - STRLEN(REPLACE(?targetMotifMatchCigarQ0VCA8MF_00825263, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1273), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ0VCA8MF_00825263, 1, (STRLEN(?targetMotifMatchCigarQ0VCA8MF_00825263) - STRLEN(REPLACE(?targetMotifMatchCigarQ0VCA8MF_00825263, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1273), '}'), '')))), '[^-]', ''))) AS ?step2274) .
BIND(((?step2274 + ?targetMotifMatchRegionMatchBeginPositionMF_00825264) - 1) AS ?thisPositionOn99) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn100) .
BIND(?this AS ?pfs4t275) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn99))) AS ?pfsb97) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn100))) AS ?pfse98) .
FILTER ((BOUND(?thisPositionOn99) && BOUND(?thisPositionOn100))) .
BIND(URI(CONCAT(STR(?this), '#MF_03019a96')) AS ?annotation96) .
BIND(?this AS ?pfs95) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch280 faldo:location ?templateMotifSequenceMatchRegionQ0VCA8281 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ0VCA8283 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ0VCA8MF_00825276 .
?templateMotifSequenceMatchRegionQ0VCA8281 faldo:begin ?templateMotifSequenceMatchBeginQ0VCA8282 .
?templateMotifSequenceMatchBeginQ0VCA8282 faldo:position ?templateMotifSequenceMatchBeginPositionQ0VCA8277 ;
faldo:reference isoform:Q0VCA8-1 .
?templateMotifSequenceProfileAlignmentOperationQ0VCA8283 edam:has_input signature:MF_00825 ;
rdf:type edam:operation_0300 .
?targetMotifMatch284 faldo:location ?targetMotifMatchRegionMatch285 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00825287 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ0VCA8MF_00825278 .
?targetMotifMatchRegionMatch285 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00825286 .
?targetMotifMatchRegionMatchBeginMF_00825286 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00825279 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00825287 edam:has_input signature:MF_00825 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:33208 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ0VCA8MF_00825276, 1, (STRLEN(?templateMotifCigarQ0VCA8MF_00825276) - STRLEN(REPLACE(?templateMotifCigarQ0VCA8MF_00825276, CONCAT('^(?:-*[^-]){', STR(((43 - ?templateMotifSequenceMatchBeginPositionQ0VCA8277) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1288) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ0VCA8MF_00825278, 1, (STRLEN(?targetMotifMatchCigarQ0VCA8MF_00825278) - STRLEN(REPLACE(?targetMotifMatchCigarQ0VCA8MF_00825278, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1288), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ0VCA8MF_00825278, 1, (STRLEN(?targetMotifMatchCigarQ0VCA8MF_00825278) - STRLEN(REPLACE(?targetMotifMatchCigarQ0VCA8MF_00825278, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1288), '}'), '')))), '[^-]', ''))) AS ?step2289) .
BIND(((?step2289 + ?targetMotifMatchRegionMatchBeginPositionMF_00825279) - 1) AS ?thisPositionOn106) .
BIND(?thisPositionOn106 AS ?thisPositionOn107) .
BIND(?this AS ?pfs4t290) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn106))) AS ?pfsb103) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn107))) AS ?pfse104) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn106, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_03019a102')) AS ?annotation102) .
BIND(?this AS ?pfs101) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch295 faldo:location ?templateMotifSequenceMatchRegionQ0VCA8296 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ0VCA8298 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ0VCA8MF_00825291 .
?templateMotifSequenceMatchRegionQ0VCA8296 faldo:begin ?templateMotifSequenceMatchBeginQ0VCA8297 .
?templateMotifSequenceMatchBeginQ0VCA8297 faldo:position ?templateMotifSequenceMatchBeginPositionQ0VCA8292 ;
faldo:reference isoform:Q0VCA8-1 .
?templateMotifSequenceProfileAlignmentOperationQ0VCA8298 edam:has_input signature:MF_00825 ;
rdf:type edam:operation_0300 .
?targetMotifMatch299 faldo:location ?targetMotifMatchRegionMatch300 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00825302 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ0VCA8MF_00825293 .
?targetMotifMatchRegionMatch300 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00825301 .
?targetMotifMatchRegionMatchBeginMF_00825301 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00825294 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00825302 edam:has_input signature:MF_00825 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:33208 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ0VCA8MF_00825291, 1, (STRLEN(?templateMotifCigarQ0VCA8MF_00825291) - STRLEN(REPLACE(?templateMotifCigarQ0VCA8MF_00825291, CONCAT('^(?:-*[^-]){', STR(((53 - ?templateMotifSequenceMatchBeginPositionQ0VCA8292) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1303) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ0VCA8MF_00825293, 1, (STRLEN(?targetMotifMatchCigarQ0VCA8MF_00825293) - STRLEN(REPLACE(?targetMotifMatchCigarQ0VCA8MF_00825293, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1303), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ0VCA8MF_00825293, 1, (STRLEN(?targetMotifMatchCigarQ0VCA8MF_00825293) - STRLEN(REPLACE(?targetMotifMatchCigarQ0VCA8MF_00825293, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1303), '}'), '')))), '[^-]', ''))) AS ?step2304) .
BIND(((?step2304 + ?targetMotifMatchRegionMatchBeginPositionMF_00825294) - 1) AS ?thisPositionOn114) .
BIND(?thisPositionOn114 AS ?thisPositionOn115) .
BIND(?this AS ?pfs4t305) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn114))) AS ?pfsb110) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn115))) AS ?pfse111) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn114, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_03019a109')) AS ?annotation109) .
BIND(?this AS ?pfs108) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch310 faldo:location ?templateMotifSequenceMatchRegionQ0VCA8311 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ0VCA8313 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ0VCA8MF_00825306 .
?templateMotifSequenceMatchRegionQ0VCA8311 faldo:begin ?templateMotifSequenceMatchBeginQ0VCA8312 .
?templateMotifSequenceMatchBeginQ0VCA8312 faldo:position ?templateMotifSequenceMatchBeginPositionQ0VCA8307 ;
faldo:reference isoform:Q0VCA8-1 .
?templateMotifSequenceProfileAlignmentOperationQ0VCA8313 edam:has_input signature:MF_00825 ;
rdf:type edam:operation_0300 .
?targetMotifMatch314 faldo:location ?targetMotifMatchRegionMatch315 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00825317 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ0VCA8MF_00825308 .
?targetMotifMatchRegionMatch315 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00825316 .
?targetMotifMatchRegionMatchBeginMF_00825316 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00825309 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00825317 edam:has_input signature:MF_00825 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:33208 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ0VCA8MF_00825306, 1, (STRLEN(?templateMotifCigarQ0VCA8MF_00825306) - STRLEN(REPLACE(?templateMotifCigarQ0VCA8MF_00825306, CONCAT('^(?:-*[^-]){', STR(((95 - ?templateMotifSequenceMatchBeginPositionQ0VCA8307) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1318) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ0VCA8MF_00825308, 1, (STRLEN(?targetMotifMatchCigarQ0VCA8MF_00825308) - STRLEN(REPLACE(?targetMotifMatchCigarQ0VCA8MF_00825308, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1318), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ0VCA8MF_00825308, 1, (STRLEN(?targetMotifMatchCigarQ0VCA8MF_00825308) - STRLEN(REPLACE(?targetMotifMatchCigarQ0VCA8MF_00825308, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1318), '}'), '')))), '[^-]', ''))) AS ?step2319) .
BIND(((?step2319 + ?targetMotifMatchRegionMatchBeginPositionMF_00825309) - 1) AS ?thisPositionOn122) .
BIND(?thisPositionOn122 AS ?thisPositionOn123) .
BIND(?this AS ?pfs4t320) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn122))) AS ?pfsb118) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn123))) AS ?pfse119) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn122, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_03019a117')) AS ?annotation117) .
BIND(?this AS ?pfs116) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch325 faldo:location ?templateMotifSequenceMatchRegionQ0VCA8326 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ0VCA8328 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ0VCA8MF_00825321 .
?templateMotifSequenceMatchRegionQ0VCA8326 faldo:begin ?templateMotifSequenceMatchBeginQ0VCA8327 .
?templateMotifSequenceMatchBeginQ0VCA8327 faldo:position ?templateMotifSequenceMatchBeginPositionQ0VCA8322 ;
faldo:reference isoform:Q0VCA8-1 .
?templateMotifSequenceProfileAlignmentOperationQ0VCA8328 edam:has_input signature:MF_00825 ;
rdf:type edam:operation_0300 .
?targetMotifMatch329 faldo:location ?targetMotifMatchRegionMatch330 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00825332 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ0VCA8MF_00825323 .
?targetMotifMatchRegionMatch330 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00825331 .
?targetMotifMatchRegionMatchBeginMF_00825331 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00825324 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00825332 edam:has_input signature:MF_00825 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:33208 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ0VCA8MF_00825321, 1, (STRLEN(?templateMotifCigarQ0VCA8MF_00825321) - STRLEN(REPLACE(?templateMotifCigarQ0VCA8MF_00825321, CONCAT('^(?:-*[^-]){', STR(((105 - ?templateMotifSequenceMatchBeginPositionQ0VCA8322) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1333) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ0VCA8MF_00825323, 1, (STRLEN(?targetMotifMatchCigarQ0VCA8MF_00825323) - STRLEN(REPLACE(?targetMotifMatchCigarQ0VCA8MF_00825323, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1333), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ0VCA8MF_00825323, 1, (STRLEN(?targetMotifMatchCigarQ0VCA8MF_00825323) - STRLEN(REPLACE(?targetMotifMatchCigarQ0VCA8MF_00825323, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1333), '}'), '')))), '[^-]', ''))) AS ?step2334) .
BIND(((?step2334 + ?targetMotifMatchRegionMatchBeginPositionMF_00825324) - 1) AS ?thisPositionOn130) .
BIND(?thisPositionOn130 AS ?thisPositionOn131) .
BIND(?this AS ?pfs4t335) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn130))) AS ?pfsb126) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn131))) AS ?pfse127) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn130, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_03019a125')) AS ?annotation125) .
BIND(?this AS ?pfs124) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch340 faldo:location ?templateMotifSequenceMatchRegionP47096341 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP47096343 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP47096MF_00825336 .
?templateMotifSequenceMatchRegionP47096341 faldo:begin ?templateMotifSequenceMatchBeginP47096342 .
?templateMotifSequenceMatchBeginP47096342 faldo:position ?templateMotifSequenceMatchBeginPositionP47096337 ;
faldo:reference isoform:P47096-1 .
?templateMotifSequenceProfileAlignmentOperationP47096343 edam:has_input signature:MF_00825 ;
rdf:type edam:operation_0300 .
?targetMotifMatch344 faldo:location ?targetMotifMatchRegionMatch345 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00825347 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP47096MF_00825338 .
?targetMotifMatchRegionMatch345 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00825346 .
?targetMotifMatchRegionMatchBeginMF_00825346 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00825339 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00825347 edam:has_input signature:MF_00825 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:4751 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP47096MF_00825336, 1, (STRLEN(?templateMotifCigarP47096MF_00825336) - STRLEN(REPLACE(?templateMotifCigarP47096MF_00825336, CONCAT('^(?:-*[^-]){', STR(((45 - ?templateMotifSequenceMatchBeginPositionP47096337) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1348) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP47096MF_00825338, 1, (STRLEN(?targetMotifMatchCigarP47096MF_00825338) - STRLEN(REPLACE(?targetMotifMatchCigarP47096MF_00825338, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1348), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP47096MF_00825338, 1, (STRLEN(?targetMotifMatchCigarP47096MF_00825338) - STRLEN(REPLACE(?targetMotifMatchCigarP47096MF_00825338, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1348), '}'), '')))), '[^-]', ''))) AS ?step2349) .
BIND(((?step2349 + ?targetMotifMatchRegionMatchBeginPositionMF_00825339) - 1) AS ?thisPositionOn137) .
BIND(?thisPositionOn137 AS ?thisPositionOn138) .
BIND(?this AS ?pfs5t350) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn137))) AS ?pfsb134) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn138))) AS ?pfse135) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn137, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_03019a133')) AS ?annotation133) .
BIND(?this AS ?pfs132) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch355 faldo:location ?templateMotifSequenceMatchRegionP47096356 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP47096358 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP47096MF_00825351 .
?templateMotifSequenceMatchRegionP47096356 faldo:begin ?templateMotifSequenceMatchBeginP47096357 .
?templateMotifSequenceMatchBeginP47096357 faldo:position ?templateMotifSequenceMatchBeginPositionP47096352 ;
faldo:reference isoform:P47096-1 .
?templateMotifSequenceProfileAlignmentOperationP47096358 edam:has_input signature:MF_00825 ;
rdf:type edam:operation_0300 .
?targetMotifMatch359 faldo:location ?targetMotifMatchRegionMatch360 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00825362 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP47096MF_00825353 .
?targetMotifMatchRegionMatch360 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00825361 .
?targetMotifMatchRegionMatchBeginMF_00825361 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00825354 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00825362 edam:has_input signature:MF_00825 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:4751 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP47096MF_00825351, 1, (STRLEN(?templateMotifCigarP47096MF_00825351) - STRLEN(REPLACE(?templateMotifCigarP47096MF_00825351, CONCAT('^(?:-*[^-]){', STR(((55 - ?templateMotifSequenceMatchBeginPositionP47096352) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1363) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP47096MF_00825353, 1, (STRLEN(?targetMotifMatchCigarP47096MF_00825353) - STRLEN(REPLACE(?targetMotifMatchCigarP47096MF_00825353, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1363), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP47096MF_00825353, 1, (STRLEN(?targetMotifMatchCigarP47096MF_00825353) - STRLEN(REPLACE(?targetMotifMatchCigarP47096MF_00825353, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1363), '}'), '')))), '[^-]', ''))) AS ?step2364) .
BIND(((?step2364 + ?targetMotifMatchRegionMatchBeginPositionMF_00825354) - 1) AS ?thisPositionOn145) .
BIND(?thisPositionOn145 AS ?thisPositionOn146) .
BIND(?this AS ?pfs5t365) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn145))) AS ?pfsb141) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn146))) AS ?pfse142) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn145, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_03019a140')) AS ?annotation140) .
BIND(?this AS ?pfs139) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch370 faldo:location ?templateMotifSequenceMatchRegionP47096371 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP47096373 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP47096MF_00825366 .
?templateMotifSequenceMatchRegionP47096371 faldo:begin ?templateMotifSequenceMatchBeginP47096372 .
?templateMotifSequenceMatchBeginP47096372 faldo:position ?templateMotifSequenceMatchBeginPositionP47096367 ;
faldo:reference isoform:P47096-1 .
?templateMotifSequenceProfileAlignmentOperationP47096373 edam:has_input signature:MF_00825 ;
rdf:type edam:operation_0300 .
?targetMotifMatch374 faldo:location ?targetMotifMatchRegionMatch375 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00825377 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP47096MF_00825368 .
?targetMotifMatchRegionMatch375 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00825376 .
?targetMotifMatchRegionMatchBeginMF_00825376 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00825369 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00825377 edam:has_input signature:MF_00825 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:4751 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP47096MF_00825366, 1, (STRLEN(?templateMotifCigarP47096MF_00825366) - STRLEN(REPLACE(?templateMotifCigarP47096MF_00825366, CONCAT('^(?:-*[^-]){', STR(((101 - ?templateMotifSequenceMatchBeginPositionP47096367) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1378) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP47096MF_00825368, 1, (STRLEN(?targetMotifMatchCigarP47096MF_00825368) - STRLEN(REPLACE(?targetMotifMatchCigarP47096MF_00825368, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1378), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP47096MF_00825368, 1, (STRLEN(?targetMotifMatchCigarP47096MF_00825368) - STRLEN(REPLACE(?targetMotifMatchCigarP47096MF_00825368, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1378), '}'), '')))), '[^-]', ''))) AS ?step2379) .
BIND(((?step2379 + ?targetMotifMatchRegionMatchBeginPositionMF_00825369) - 1) AS ?thisPositionOn153) .
BIND(?thisPositionOn153 AS ?thisPositionOn154) .
BIND(?this AS ?pfs5t380) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn153))) AS ?pfsb149) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn154))) AS ?pfse150) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn153, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_03019a148')) AS ?annotation148) .
BIND(?this AS ?pfs147) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch385 faldo:location ?templateMotifSequenceMatchRegionP47096386 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP47096388 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP47096MF_00825381 .
?templateMotifSequenceMatchRegionP47096386 faldo:begin ?templateMotifSequenceMatchBeginP47096387 .
?templateMotifSequenceMatchBeginP47096387 faldo:position ?templateMotifSequenceMatchBeginPositionP47096382 ;
faldo:reference isoform:P47096-1 .
?templateMotifSequenceProfileAlignmentOperationP47096388 edam:has_input signature:MF_00825 ;
rdf:type edam:operation_0300 .
?targetMotifMatch389 faldo:location ?targetMotifMatchRegionMatch390 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00825392 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP47096MF_00825383 .
?targetMotifMatchRegionMatch390 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00825391 .
?targetMotifMatchRegionMatchBeginMF_00825391 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00825384 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00825392 edam:has_input signature:MF_00825 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:4751 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP47096MF_00825381, 1, (STRLEN(?templateMotifCigarP47096MF_00825381) - STRLEN(REPLACE(?templateMotifCigarP47096MF_00825381, CONCAT('^(?:-*[^-]){', STR(((111 - ?templateMotifSequenceMatchBeginPositionP47096382) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1393) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP47096MF_00825383, 1, (STRLEN(?targetMotifMatchCigarP47096MF_00825383) - STRLEN(REPLACE(?targetMotifMatchCigarP47096MF_00825383, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1393), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP47096MF_00825383, 1, (STRLEN(?targetMotifMatchCigarP47096MF_00825383) - STRLEN(REPLACE(?targetMotifMatchCigarP47096MF_00825383, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1393), '}'), '')))), '[^-]', ''))) AS ?step2394) .
BIND(((?step2394 + ?targetMotifMatchRegionMatchBeginPositionMF_00825384) - 1) AS ?thisPositionOn161) .
BIND(?thisPositionOn161 AS ?thisPositionOn162) .
BIND(?this AS ?pfs5t395) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn161))) AS ?pfsb157) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn162))) AS ?pfse158) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn161, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_03019a156')) AS ?annotation156) .
BIND(?this AS ?pfs155) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:4751 .
BIND(?this AS ?case7) .
BIND(URI(CONCAT(STR(?this), '#MF_03019a8')) AS ?name8) .
BIND(URI(CONCAT(STR(?this), '#MF_03019a9')) AS ?name9) .
BIND(URI(CONCAT(STR(?this), '#MF_03019a10')) AS ?name10) .
BIND(URI(CONCAT(STR(?this), '#MF_03019a11')) AS ?name11) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2759 .
BIND(?this AS ?case12) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:7742 .
BIND(?this AS ?case13) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:4751 .
})) .
BIND(?this AS ?case14) .
BIND(URI(CONCAT(STR(?this), '#MF_03019a15')) AS ?name15) .
BIND(URI(CONCAT(STR(?this), '#MF_03019a16')) AS ?name16) .
BIND(URI(CONCAT(STR(?this), '#MF_03019a17')) AS ?name17) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag396) .
}
BIND(IF((BOUND(?tagFTGRP_1) || BOUND(?tagFTGRP_2)), ?caseWithTag396, ?UNBOUND_VARIABLE) AS ?case18) .
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag397) .
}
BIND(IF((BOUND(?tagFTGRP_1) || BOUND(?tagFTGRP_2) || BOUND(?tagFTGRP_3)), ?caseWithTag397, ?UNBOUND_VARIABLE) AS ?case19) .
}
"xsd:string |
