| http://purl.uniprot.org/unirules/MF_03125#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:828797 up:source unirule:MF_03125 .
_:828798 up:source unirule:MF_03125 .
_:828799 up:source unirule:MF_03125 .
_:828800 up:source unirule:MF_03125 .
_:828801 up:source unirule:MF_03125 .
_:828802 up:source unirule:MF_03125 .
_:828803 up:source unirule:MF_03125 .
_:828804 up:source unirule:MF_03125 .
_:828805 up:source unirule:MF_03125 .
_:828806 up:source unirule:MF_03125 .
_:828807 up:source unirule:MF_03125 .
_:828808 up:source unirule:MF_03125 .
_:828809 up:source unirule:MF_03125 .
_:828810 up:source unirule:MF_03125 .
_:828811 up:source unirule:MF_03125 .
_:828812 up:source unirule:MF_03125 .
_:828813 up:source unirule:MF_03125 .
_:828814 up:source unirule:MF_03125 .
_:828815 up:source unirule:MF_03125 .
_:828816 up:source unirule:MF_03125 .
_:828817 up:source unirule:MF_03125 .
_:828818 up:source unirule:MF_03125 .
_:828819 up:source unirule:MF_03125 .
_:828820 up:source unirule:MF_03125 .
_:828821 up:source unirule:MF_03125 .
_:828822 up:source unirule:MF_03125 .
_:828823 up:source unirule:MF_03125 .
_:828824 up:source unirule:MF_03125 .
_:828825 up:source unirule:MF_03125 .
_:828826 up:source unirule:MF_03125 .
_:828827 up:source unirule:MF_03125 .
_:828828 up:source unirule:MF_03125 .
_:828829 up:source unirule:MF_03125 .
_:828830 up:source unirule:MF_03125 .
_:828831 up:source unirule:MF_03125 .
_:828832 up:source unirule:MF_03125 .
_:828833 up:source unirule:MF_03125 .
_:828834 up:source unirule:MF_03125 .
_:828835 up:source unirule:MF_03125 .
_:828836 up:source unirule:MF_03125 .
_:828837 up:source unirule:MF_03125 .
_:828838 up:source unirule:MF_03125 .
_:828839 up:source unirule:MF_03125 .
_:828840 up:source unirule:MF_03125 .
_:828841 up:source unirule:MF_03125 .
_:828842 up:source unirule:MF_03125 .
_:828843 up:source unirule:MF_03125 .
_:828844 up:source unirule:MF_03125 .
_:828845 up:source unirule:MF_03125 .
?this up:annotation ?annotation0 ,
?annotation2 ,
?annotation3 ,
?annotation4 ,
?annotation5 ;
up:classifiedWith GO:0000287 ,
GO:0004019 ,
GO:0005525 ,
GO:0005737 ,
GO:0044208 ,
keyword:342 ,
keyword:436 ,
keyword:460 ,
keyword:479 ,
keyword:547 ,
keyword:658 .
?annotation0 up:activity ?activity1 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity1 up:catalyticActivity ;
up:enzymeClass .
?annotation2 up:cofactor chebi:18420 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 1 Mg(2+) ion per subunit.' .
?annotation3 a up:Pathway_Annotation ;
rdfs:comment 'Purine metabolism; AMP biosynthesis via de novo pathway; AMP from IMP: step 1/2.' .
?annotation4 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation5 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the adenylosuccinate synthetase family.' .
?case6 up:alternativeName ?name8 ;
up:classifiedWith GO:0070111 ,
keyword:934 ,
keyword:994 ;
up:recommendedName ?name7 .
?name7 up:ecName '6.3.4.4' ;
up:fullName 'Adenylosuccinate synthetase, organellar chromatophore' ;
up:shortName 'AMPSase' ,
'AdSS' ;
rdf:type up:Structured_Name .
?name8 up:fullName 'IMP--aspartate ligase' ;
rdf:type up:Structured_Name .
?case12 up:alternativeName ?name14 ;
up:classifiedWith GO:0009507 ,
keyword:150 ,
keyword:934 ;
up:recommendedName ?name13 .
?name13 up:ecName '6.3.4.4' ;
up:fullName 'Adenylosuccinate synthetase, chloroplastic' ;
up:shortName 'AMPSase' ,
'AdSS' ;
rdf:type up:Structured_Name .
?name14 up:fullName 'IMP--aspartate ligase' ;
rdf:type up:Structured_Name .
?case15 up:alternativeName ?name17 ;
up:classifiedWith GO:0005737 ,
keyword:963 ;
up:recommendedName ?name16 .
?name16 up:ecName '6.3.4.4' ;
up:fullName 'Adenylosuccinate synthetase' ;
up:shortName 'AMPSase' ,
'AdSS' ;
rdf:type up:Structured_Name .
?name17 up:fullName 'IMP--aspartate ligase' ;
rdf:type up:Structured_Name .
?pfs20 up:annotation ?annotation21 .
?annotation21 faldo:begin ?pfsb22 ;
faldo:end ?pfse23 ;
up:ligand ?ligand24 ;
rdf:type up:Binding_Site_Annotation .
?pfsb22 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?pfse23 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?ligand24 rdfs:subClassOf chebi:37565 .
?pfs27 up:annotation ?annotation28 .
?annotation28 faldo:begin ?pfsb29 ;
faldo:end ?pfse30 ;
up:ligand ?ligand31 ;
rdf:type up:Binding_Site_Annotation .
?pfsb29 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?pfse30 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?ligand31 rdfs:subClassOf chebi:37565 .
?pfs34 up:annotation ?annotation35 .
?annotation35 faldo:begin ?pfsb36 ;
faldo:end ?pfse37 ;
up:ligand ?ligand38 ;
rdf:type up:Binding_Site_Annotation .
?pfsb36 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?pfse37 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?ligand38 rdfs:subClassOf chebi:37565 .
?pfs41 up:annotation ?annotation42 .
?annotation42 faldo:begin ?pfsb43 ;
faldo:end ?pfse44 ;
up:ligand ?ligand45 ;
rdf:type up:Binding_Site_Annotation .
?pfsb43 faldo:position ?thisPositionOn46 ;
rdf:type faldo:ExactPosition .
?pfse44 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?ligand45 rdfs:subClassOf chebi:37565 .
?pfs48 up:annotation ?annotation49 .
?annotation49 faldo:begin ?pfsb50 ;
faldo:end ?pfse51 ;
up:ligand ?ligand52 ;
rdf:type up:Binding_Site_Annotation .
?pfsb50 faldo:position ?thisPositionOn53 ;
rdf:type faldo:ExactPosition .
?pfse51 faldo:position ?thisPositionOn54 ;
rdf:type faldo:ExactPosition .
?ligand52 rdfs:subClassOf chebi:58053 .
?pfs55 up:annotation ?annotation56 .
?annotation56 faldo:begin ?pfsb57 ;
faldo:end ?pfse58 ;
up:ligand ?ligand59 ;
rdf:type up:Binding_Site_Annotation .
?pfsb57 faldo:position ?thisPositionOn60 ;
rdf:type faldo:ExactPosition .
?pfse58 faldo:position ?thisPositionOn61 ;
rdf:type faldo:ExactPosition .
?ligand59 rdfs:subClassOf chebi:58053 .
?pfs62 up:annotation ?annotation63 .
?annotation63 faldo:begin ?pfsb64 ;
faldo:end ?pfse65 ;
up:ligand ?ligand66 ;
rdf:type up:Binding_Site_Annotation .
?pfsb64 faldo:position ?thisPositionOn68 ;
rdf:type faldo:ExactPosition .
?pfse65 faldo:position ?thisPositionOn69 ;
rdf:type faldo:ExactPosition .
?ligand66 rdfs:subClassOf ?molecule67 .
?molecule67 rdfs:label 'substrate' .
?pfs70 up:annotation ?annotation71 .
?annotation71 faldo:begin ?pfsb72 ;
faldo:end ?pfse73 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb72 faldo:position ?thisPositionOn74 ;
rdf:type faldo:ExactPosition .
?pfse73 faldo:position ?thisPositionOn75 ;
rdf:type faldo:ExactPosition .
?pfs76 up:annotation ?annotation77 .
?annotation77 faldo:begin ?pfsb78 ;
faldo:end ?pfse79 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton donor' .
?pfsb78 faldo:position ?thisPositionOn80 ;
rdf:type faldo:ExactPosition .
?pfse79 faldo:position ?thisPositionOn81 ;
rdf:type faldo:ExactPosition .
?pfs82 up:annotation ?annotation83 .
?annotation83 faldo:begin ?pfsb84 ;
faldo:end ?pfse85 ;
up:ligand ?ligand86 ;
rdf:type up:Binding_Site_Annotation .
?pfsb84 faldo:position ?thisPositionOn87 ;
rdf:type faldo:ExactPosition .
?pfse85 faldo:position ?thisPositionOn88 ;
rdf:type faldo:ExactPosition .
?ligand86 rdfs:subClassOf chebi:18420 .
?pfs89 up:annotation ?annotation90 .
?annotation90 faldo:begin ?pfsb91 ;
faldo:end ?pfse92 ;
up:ligand ?ligand93 ;
rdf:type up:Binding_Site_Annotation .
?pfsb91 faldo:position ?thisPositionOn94 ;
rdf:type faldo:ExactPosition .
?pfse92 faldo:position ?thisPositionOn95 ;
rdf:type faldo:ExactPosition .
?ligand93 rdfs:subClassOf chebi:18420 .
?pfs96 up:annotation ?annotation97 .
?annotation97 faldo:begin ?pfsb98 ;
faldo:end ?pfse99 ;
up:ligand ?ligand100 ;
rdf:type up:Binding_Site_Annotation .
?pfsb98 faldo:position ?thisPositionOn101 ;
rdf:type faldo:ExactPosition .
?pfse99 faldo:position ?thisPositionOn102 ;
rdf:type faldo:ExactPosition .
?ligand100 rdfs:subClassOf chebi:58053 .
?pfs103 up:annotation ?annotation104 .
?annotation104 faldo:begin ?pfsb105 ;
faldo:end ?pfse106 ;
up:ligand ?ligand107 ;
rdf:type up:Binding_Site_Annotation .
?pfsb105 faldo:position ?thisPositionOn108 ;
rdf:type faldo:ExactPosition .
?pfse106 faldo:position ?thisPositionOn109 ;
rdf:type faldo:ExactPosition .
?ligand107 rdfs:subClassOf chebi:58053 .
?pfs110 up:annotation ?annotation111 .
?annotation111 faldo:begin ?pfsb112 ;
faldo:end ?pfse113 ;
up:ligand ?ligand114 ;
rdf:type up:Binding_Site_Annotation .
?pfsb112 faldo:position ?thisPositionOn115 ;
rdf:type faldo:ExactPosition .
?pfse113 faldo:position ?thisPositionOn116 ;
rdf:type faldo:ExactPosition .
?ligand114 rdfs:subClassOf chebi:58053 .
?pfs117 up:annotation ?annotation118 .
?annotation118 faldo:begin ?pfsb119 ;
faldo:end ?pfse120 ;
up:ligand ?ligand121 ;
rdf:type up:Binding_Site_Annotation .
?pfsb119 faldo:position ?thisPositionOn122 ;
rdf:type faldo:ExactPosition .
?pfse120 faldo:position ?thisPositionOn123 ;
rdf:type faldo:ExactPosition .
?ligand121 rdfs:subClassOf chebi:58053 .
?pfs124 up:annotation ?annotation125 .
?annotation125 faldo:begin ?pfsb126 ;
faldo:end ?pfse127 ;
up:ligand ?ligand128 ;
rdf:type up:Binding_Site_Annotation .
?pfsb126 faldo:position ?thisPositionOn129 ;
rdf:type faldo:ExactPosition .
?pfse127 faldo:position ?thisPositionOn130 ;
rdf:type faldo:ExactPosition .
?ligand128 rdfs:subClassOf chebi:58053 .
?pfs131 up:annotation ?annotation132 .
?annotation132 faldo:begin ?pfsb133 ;
faldo:end ?pfse134 ;
up:ligand ?ligand135 ;
rdf:type up:Binding_Site_Annotation .
?pfsb133 faldo:position ?thisPositionOn136 ;
rdf:type faldo:ExactPosition .
?pfse134 faldo:position ?thisPositionOn137 ;
rdf:type faldo:ExactPosition .
?ligand135 rdfs:subClassOf chebi:37565 .
?pfs138 up:annotation ?annotation139 .
?annotation139 faldo:begin ?pfsb140 ;
faldo:end ?pfse141 ;
up:ligand ?ligand142 ;
rdf:type up:Binding_Site_Annotation .
?pfsb140 faldo:position ?thisPositionOn143 ;
rdf:type faldo:ExactPosition .
?pfse141 faldo:position ?thisPositionOn144 ;
rdf:type faldo:ExactPosition .
?ligand142 rdfs:subClassOf chebi:37565 .
?pfs145 up:annotation ?annotation146 .
?annotation146 faldo:begin ?pfsb147 ;
faldo:end ?pfse148 ;
up:ligand ?ligand149 ;
rdf:type up:Binding_Site_Annotation .
?pfsb147 faldo:position ?thisPositionOn150 ;
rdf:type faldo:ExactPosition .
?pfse148 faldo:position ?thisPositionOn151 ;
rdf:type faldo:ExactPosition .
?ligand149 rdfs:subClassOf chebi:37565 .
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up:attribution _:828797 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation0 .
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rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
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rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
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rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
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rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
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up:attribution _:828802 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:342 .
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rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:436 .
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rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
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up:attribution _:828805 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
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rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
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rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:658 .
_:828857 a rdf:Statement ;
up:attribution _:828808 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:828858 a rdf:Statement ;
up:attribution _:828809 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004019 .
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up:attribution _:828810 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005525 .
_:828860 a rdf:Statement ;
up:attribution _:828811 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000287 .
_:828861 a rdf:Statement ;
up:attribution _:828812 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0044208 .
_:828862 a rdf:Statement ;
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rdf:subject ?case6 ;
rdf:predicate up:recommendedName ;
rdf:object ?name7 .
_:828863 a rdf:Statement ;
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rdf:subject ?case6 ;
rdf:predicate up:alternativeName ;
rdf:object ?name8 .
_:828864 a rdf:Statement ;
up:attribution _:828815 ;
rdf:subject ?case6 ;
rdf:predicate up:classifiedWith ;
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rdf:subject ?case6 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:934 .
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up:attribution _:828817 ;
rdf:subject ?case6 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0070111 .
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rdf:subject ?case12 ;
rdf:predicate up:recommendedName ;
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rdf:subject ?case12 ;
rdf:predicate up:alternativeName ;
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rdf:subject ?case12 ;
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rdf:subject ?case12 ;
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rdf:subject ?case12 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009507 .
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rdf:subject ?case15 ;
rdf:predicate up:recommendedName ;
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rdf:subject ?case15 ;
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rdf:subject ?case15 ;
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up:attribution _:828826 ;
rdf:subject ?case15 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
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up:source unirule:MF_03125 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
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rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
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rdf:predicate up:annotation ;
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rdf:predicate up:annotation ;
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rdf:predicate up:annotation ;
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_:828893 a rdf:Statement ;
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rdf:subject ?pfs76 ;
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up:source unirule:MF_03125 ;
rdf:subject ?pfs110 ;
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rdf:subject ?pfs110 ;
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up:source unirule:MF_03125 ;
rdf:subject ?pfs117 ;
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rdf:subject ?pfs117 ;
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rdf:subject ?pfs124 ;
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rdf:subject ?pfs145 ;
rdf:predicate up:annotation ;
rdf:object ?annotation146 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_03125
#Rule MF_03125 Created by:? on:2012-08-21 Modified by:Edouard de Castro on:2024-09-03
{
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00011 .
?thisOrganism rdfs:subClassOf+ taxon:2759 .
FILTER (! (EXISTS {
?this rdfs:seeAlso signature:MF_03127 .
})) .
} UNION {
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00011 .
?thisOrganism rdfs:subClassOf+ taxon:2759 .
FILTER (! (EXISTS {
?this rdfs:seeAlso signature:MF_03127 .
})) .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:2759 .
})) .
} UNION {
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00011 .
?thisOrganism rdfs:subClassOf+ taxon:2759 .
FILTER (! (EXISTS {
?this rdfs:seeAlso signature:MF_03126 .
})) .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:2759 .
})) .
} UNION {
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00011 .
?thisOrganism rdfs:subClassOf+ taxon:2759 .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:2759 .
})) .
} UNION {
?this rdfs:seeAlso signature:MF_00011 .
FILTER (! (EXISTS {
?this rdfs:seeAlso signature:MF_03127 .
})) .
{
?this up:encodedIn up:Plastid .
} UNION {
?this up:encodedIn up:Chloroplast .
} UNION {
?this up:encodedIn up:Cyanelle .
} UNION {
?this up:encodedIn up:Apicoplast .
} UNION {
?this up:encodedIn up:Organellar_chromatophore .
} UNION {
?this up:encodedIn up:Non-photosynthetic_plastid .
}
} UNION {
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00011 .
FILTER (! (EXISTS {
?this rdfs:seeAlso signature:MF_03127 .
})) .
{
?this up:encodedIn up:Plastid .
} UNION {
?this up:encodedIn up:Chloroplast .
} UNION {
?this up:encodedIn up:Cyanelle .
} UNION {
?this up:encodedIn up:Apicoplast .
} UNION {
?this up:encodedIn up:Organellar_chromatophore .
} UNION {
?this up:encodedIn up:Non-photosynthetic_plastid .
}
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:2759 .
})) .
} UNION {
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00011 .
FILTER (! (EXISTS {
?this rdfs:seeAlso signature:MF_03126 .
})) .
{
?this up:encodedIn up:Plastid .
} UNION {
?this up:encodedIn up:Chloroplast .
} UNION {
?this up:encodedIn up:Cyanelle .
} UNION {
?this up:encodedIn up:Apicoplast .
} UNION {
?this up:encodedIn up:Organellar_chromatophore .
} UNION {
?this up:encodedIn up:Non-photosynthetic_plastid .
}
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:2759 .
})) .
} UNION {
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00011 .
{
?this up:encodedIn up:Plastid .
} UNION {
?this up:encodedIn up:Chloroplast .
} UNION {
?this up:encodedIn up:Cyanelle .
} UNION {
?this up:encodedIn up:Apicoplast .
} UNION {
?this up:encodedIn up:Organellar_chromatophore .
} UNION {
?this up:encodedIn up:Non-photosynthetic_plastid .
}
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:2759 .
})) .
}
BIND(URI(CONCAT(STR(?this), '#MF_03125a0')) AS ?annotation0) .
BIND(URI(CONCAT(STR(?this), '#MF_03125a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_03125a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_03125a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_03125a5')) AS ?annotation5) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch156 faldo:location ?templateMotifSequenceMatchRegionQ9U8D3157 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9U8D3159 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9U8D3MF_00011152 .
?templateMotifSequenceMatchRegionQ9U8D3157 faldo:begin ?templateMotifSequenceMatchBeginQ9U8D3158 .
?templateMotifSequenceMatchBeginQ9U8D3158 faldo:position ?templateMotifSequenceMatchBeginPositionQ9U8D3153 ;
faldo:reference isoform:Q9U8D3-1 .
?templateMotifSequenceProfileAlignmentOperationQ9U8D3159 edam:has_input signature:MF_00011 ;
rdf:type edam:operation_0300 .
?targetMotifMatch160 faldo:location ?targetMotifMatchRegionMatch161 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00011163 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9U8D3MF_00011154 .
?targetMotifMatchRegionMatch161 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00011162 .
?targetMotifMatchRegionMatchBeginMF_00011162 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00011155 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00011163 edam:has_input signature:MF_00011 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9U8D3MF_00011152, 1, (STRLEN(?templateMotifCigarQ9U8D3MF_00011152) - STRLEN(REPLACE(?templateMotifCigarQ9U8D3MF_00011152, CONCAT('^(?:-*[^-]){', STR(((25 - ?templateMotifSequenceMatchBeginPositionQ9U8D3153) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1164) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9U8D3MF_00011154, 1, (STRLEN(?targetMotifMatchCigarQ9U8D3MF_00011154) - STRLEN(REPLACE(?targetMotifMatchCigarQ9U8D3MF_00011154, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1164), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9U8D3MF_00011154, 1, (STRLEN(?targetMotifMatchCigarQ9U8D3MF_00011154) - STRLEN(REPLACE(?targetMotifMatchCigarQ9U8D3MF_00011154, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1164), '}'), '')))), '[^-]', ''))) AS ?step2165) .
BIND(((?step2165 + ?targetMotifMatchRegionMatchBeginPositionMF_00011155) - 1) AS ?thisPositionOn25) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9U8D3MF_00011152, 1, (STRLEN(?templateMotifCigarQ9U8D3MF_00011152) - STRLEN(REPLACE(?templateMotifCigarQ9U8D3MF_00011152, CONCAT('^(?:-*[^-]){', STR(((31 - ?templateMotifSequenceMatchBeginPositionQ9U8D3153) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1166) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9U8D3MF_00011154, 1, (STRLEN(?targetMotifMatchCigarQ9U8D3MF_00011154) - STRLEN(REPLACE(?targetMotifMatchCigarQ9U8D3MF_00011154, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1166), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9U8D3MF_00011154, 1, (STRLEN(?targetMotifMatchCigarQ9U8D3MF_00011154) - STRLEN(REPLACE(?targetMotifMatchCigarQ9U8D3MF_00011154, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1166), '}'), '')))), '[^-]', ''))) AS ?step2167) .
BIND(((?step2167 + ?targetMotifMatchRegionMatchBeginPositionMF_00011155) - 1) AS ?thisPositionOn26) .
BIND(?this AS ?pfs1t168) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfsb22) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfse23) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn25, (?thisPositionOn26 - ?thisPositionOn25)) = 'GDEGKGK')) .
BIND(URI(CONCAT(STR(?this), '#MF_03125a21')) AS ?annotation21) .
BIND(?this AS ?pfs20) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch173 faldo:location ?templateMotifSequenceMatchRegionQ9U8D3174 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9U8D3176 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9U8D3MF_00011169 .
?templateMotifSequenceMatchRegionQ9U8D3174 faldo:begin ?templateMotifSequenceMatchBeginQ9U8D3175 .
?templateMotifSequenceMatchBeginQ9U8D3175 faldo:position ?templateMotifSequenceMatchBeginPositionQ9U8D3170 ;
faldo:reference isoform:Q9U8D3-1 .
?templateMotifSequenceProfileAlignmentOperationQ9U8D3176 edam:has_input signature:MF_00011 ;
rdf:type edam:operation_0300 .
?targetMotifMatch177 faldo:location ?targetMotifMatchRegionMatch178 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00011180 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9U8D3MF_00011171 .
?targetMotifMatchRegionMatch178 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00011179 .
?targetMotifMatchRegionMatchBeginMF_00011179 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00011172 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00011180 edam:has_input signature:MF_00011 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9U8D3MF_00011169, 1, (STRLEN(?templateMotifCigarQ9U8D3MF_00011169) - STRLEN(REPLACE(?templateMotifCigarQ9U8D3MF_00011169, CONCAT('^(?:-*[^-]){', STR(((53 - ?templateMotifSequenceMatchBeginPositionQ9U8D3170) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1181) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9U8D3MF_00011171, 1, (STRLEN(?targetMotifMatchCigarQ9U8D3MF_00011171) - STRLEN(REPLACE(?targetMotifMatchCigarQ9U8D3MF_00011171, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1181), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9U8D3MF_00011171, 1, (STRLEN(?targetMotifMatchCigarQ9U8D3MF_00011171) - STRLEN(REPLACE(?targetMotifMatchCigarQ9U8D3MF_00011171, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1181), '}'), '')))), '[^-]', ''))) AS ?step2182) .
BIND(((?step2182 + ?targetMotifMatchRegionMatchBeginPositionMF_00011172) - 1) AS ?thisPositionOn32) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9U8D3MF_00011169, 1, (STRLEN(?templateMotifCigarQ9U8D3MF_00011169) - STRLEN(REPLACE(?templateMotifCigarQ9U8D3MF_00011169, CONCAT('^(?:-*[^-]){', STR(((55 - ?templateMotifSequenceMatchBeginPositionQ9U8D3170) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1183) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9U8D3MF_00011171, 1, (STRLEN(?targetMotifMatchCigarQ9U8D3MF_00011171) - STRLEN(REPLACE(?targetMotifMatchCigarQ9U8D3MF_00011171, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1183), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9U8D3MF_00011171, 1, (STRLEN(?targetMotifMatchCigarQ9U8D3MF_00011171) - STRLEN(REPLACE(?targetMotifMatchCigarQ9U8D3MF_00011171, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1183), '}'), '')))), '[^-]', ''))) AS ?step2184) .
BIND(((?step2184 + ?targetMotifMatchRegionMatchBeginPositionMF_00011172) - 1) AS ?thisPositionOn33) .
BIND(?this AS ?pfs1t185) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfsb29) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfse30) .
FILTER (REGEX('GH[EST]', SUBSTR(?thisSequenceValue, ?thisPositionOn32, (?thisPositionOn33 - ?thisPositionOn32)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03125a28')) AS ?annotation28) .
BIND(?this AS ?pfs27) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch190 faldo:location ?templateMotifSequenceMatchRegionQ9U8D3191 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9U8D3193 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9U8D3MF_00011186 .
?templateMotifSequenceMatchRegionQ9U8D3191 faldo:begin ?templateMotifSequenceMatchBeginQ9U8D3192 .
?templateMotifSequenceMatchBeginQ9U8D3192 faldo:position ?templateMotifSequenceMatchBeginPositionQ9U8D3187 ;
faldo:reference isoform:Q9U8D3-1 .
?templateMotifSequenceProfileAlignmentOperationQ9U8D3193 edam:has_input signature:MF_00011 ;
rdf:type edam:operation_0300 .
?targetMotifMatch194 faldo:location ?targetMotifMatchRegionMatch195 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00011197 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9U8D3MF_00011188 .
?targetMotifMatchRegionMatch195 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00011196 .
?targetMotifMatchRegionMatchBeginMF_00011196 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00011189 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00011197 edam:has_input signature:MF_00011 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9U8D3MF_00011186, 1, (STRLEN(?templateMotifCigarQ9U8D3MF_00011186) - STRLEN(REPLACE(?templateMotifCigarQ9U8D3MF_00011186, CONCAT('^(?:-*[^-]){', STR(((339 - ?templateMotifSequenceMatchBeginPositionQ9U8D3187) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1198) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9U8D3MF_00011188, 1, (STRLEN(?targetMotifMatchCigarQ9U8D3MF_00011188) - STRLEN(REPLACE(?targetMotifMatchCigarQ9U8D3MF_00011188, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1198), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9U8D3MF_00011188, 1, (STRLEN(?targetMotifMatchCigarQ9U8D3MF_00011188) - STRLEN(REPLACE(?targetMotifMatchCigarQ9U8D3MF_00011188, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1198), '}'), '')))), '[^-]', ''))) AS ?step2199) .
BIND(((?step2199 + ?targetMotifMatchRegionMatchBeginPositionMF_00011189) - 1) AS ?thisPositionOn39) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9U8D3MF_00011186, 1, (STRLEN(?templateMotifCigarQ9U8D3MF_00011186) - STRLEN(REPLACE(?templateMotifCigarQ9U8D3MF_00011186, CONCAT('^(?:-*[^-]){', STR(((341 - ?templateMotifSequenceMatchBeginPositionQ9U8D3187) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1200) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9U8D3MF_00011188, 1, (STRLEN(?targetMotifMatchCigarQ9U8D3MF_00011188) - STRLEN(REPLACE(?targetMotifMatchCigarQ9U8D3MF_00011188, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1200), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9U8D3MF_00011188, 1, (STRLEN(?targetMotifMatchCigarQ9U8D3MF_00011188) - STRLEN(REPLACE(?targetMotifMatchCigarQ9U8D3MF_00011188, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1200), '}'), '')))), '[^-]', ''))) AS ?step2201) .
BIND(((?step2201 + ?targetMotifMatchRegionMatchBeginPositionMF_00011189) - 1) AS ?thisPositionOn40) .
BIND(?this AS ?pfs1t202) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfsb36) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfse37) .
FILTER (REGEX('K[ILMV]D', SUBSTR(?thisSequenceValue, ?thisPositionOn39, (?thisPositionOn40 - ?thisPositionOn39)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03125a35')) AS ?annotation35) .
BIND(?this AS ?pfs34) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch207 faldo:location ?templateMotifSequenceMatchRegionQ9U8D3208 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9U8D3210 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9U8D3MF_00011203 .
?templateMotifSequenceMatchRegionQ9U8D3208 faldo:begin ?templateMotifSequenceMatchBeginQ9U8D3209 .
?templateMotifSequenceMatchBeginQ9U8D3209 faldo:position ?templateMotifSequenceMatchBeginPositionQ9U8D3204 ;
faldo:reference isoform:Q9U8D3-1 .
?templateMotifSequenceProfileAlignmentOperationQ9U8D3210 edam:has_input signature:MF_00011 ;
rdf:type edam:operation_0300 .
?targetMotifMatch211 faldo:location ?targetMotifMatchRegionMatch212 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00011214 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9U8D3MF_00011205 .
?targetMotifMatchRegionMatch212 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00011213 .
?targetMotifMatchRegionMatchBeginMF_00011213 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00011206 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00011214 edam:has_input signature:MF_00011 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9U8D3MF_00011203, 1, (STRLEN(?templateMotifCigarQ9U8D3MF_00011203) - STRLEN(REPLACE(?templateMotifCigarQ9U8D3MF_00011203, CONCAT('^(?:-*[^-]){', STR(((425 - ?templateMotifSequenceMatchBeginPositionQ9U8D3204) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1215) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9U8D3MF_00011205, 1, (STRLEN(?targetMotifMatchCigarQ9U8D3MF_00011205) - STRLEN(REPLACE(?targetMotifMatchCigarQ9U8D3MF_00011205, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1215), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9U8D3MF_00011205, 1, (STRLEN(?targetMotifMatchCigarQ9U8D3MF_00011205) - STRLEN(REPLACE(?targetMotifMatchCigarQ9U8D3MF_00011205, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1215), '}'), '')))), '[^-]', ''))) AS ?step2216) .
BIND(((?step2216 + ?targetMotifMatchRegionMatchBeginPositionMF_00011206) - 1) AS ?thisPositionOn46) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9U8D3MF_00011203, 1, (STRLEN(?templateMotifCigarQ9U8D3MF_00011203) - STRLEN(REPLACE(?templateMotifCigarQ9U8D3MF_00011203, CONCAT('^(?:-*[^-]){', STR(((427 - ?templateMotifSequenceMatchBeginPositionQ9U8D3204) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1217) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9U8D3MF_00011205, 1, (STRLEN(?targetMotifMatchCigarQ9U8D3MF_00011205) - STRLEN(REPLACE(?targetMotifMatchCigarQ9U8D3MF_00011205, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1217), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9U8D3MF_00011205, 1, (STRLEN(?targetMotifMatchCigarQ9U8D3MF_00011205) - STRLEN(REPLACE(?targetMotifMatchCigarQ9U8D3MF_00011205, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1217), '}'), '')))), '[^-]', ''))) AS ?step2218) .
BIND(((?step2218 + ?targetMotifMatchRegionMatchBeginPositionMF_00011206) - 1) AS ?thisPositionOn47) .
BIND(?this AS ?pfs1t219) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfsb43) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfse44) .
FILTER (REGEX('G[INTV]G', SUBSTR(?thisSequenceValue, ?thisPositionOn46, (?thisPositionOn47 - ?thisPositionOn46)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03125a42')) AS ?annotation42) .
BIND(?this AS ?pfs41) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch224 faldo:location ?templateMotifSequenceMatchRegionQ9U8D3225 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9U8D3227 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9U8D3MF_00011220 .
?templateMotifSequenceMatchRegionQ9U8D3225 faldo:begin ?templateMotifSequenceMatchBeginQ9U8D3226 .
?templateMotifSequenceMatchBeginQ9U8D3226 faldo:position ?templateMotifSequenceMatchBeginPositionQ9U8D3221 ;
faldo:reference isoform:Q9U8D3-1 .
?templateMotifSequenceProfileAlignmentOperationQ9U8D3227 edam:has_input signature:MF_00011 ;
rdf:type edam:operation_0300 .
?targetMotifMatch228 faldo:location ?targetMotifMatchRegionMatch229 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00011231 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9U8D3MF_00011222 .
?targetMotifMatchRegionMatch229 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00011230 .
?targetMotifMatchRegionMatchBeginMF_00011230 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00011223 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00011231 edam:has_input signature:MF_00011 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9U8D3MF_00011220, 1, (STRLEN(?templateMotifCigarQ9U8D3MF_00011220) - STRLEN(REPLACE(?templateMotifCigarQ9U8D3MF_00011220, CONCAT('^(?:-*[^-]){', STR(((26 - ?templateMotifSequenceMatchBeginPositionQ9U8D3221) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1232) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9U8D3MF_00011222, 1, (STRLEN(?targetMotifMatchCigarQ9U8D3MF_00011222) - STRLEN(REPLACE(?targetMotifMatchCigarQ9U8D3MF_00011222, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1232), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9U8D3MF_00011222, 1, (STRLEN(?targetMotifMatchCigarQ9U8D3MF_00011222) - STRLEN(REPLACE(?targetMotifMatchCigarQ9U8D3MF_00011222, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1232), '}'), '')))), '[^-]', ''))) AS ?step2233) .
BIND(((?step2233 + ?targetMotifMatchRegionMatchBeginPositionMF_00011223) - 1) AS ?thisPositionOn53) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9U8D3MF_00011220, 1, (STRLEN(?templateMotifCigarQ9U8D3MF_00011220) - STRLEN(REPLACE(?templateMotifCigarQ9U8D3MF_00011220, CONCAT('^(?:-*[^-]){', STR(((29 - ?templateMotifSequenceMatchBeginPositionQ9U8D3221) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1234) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9U8D3MF_00011222, 1, (STRLEN(?targetMotifMatchCigarQ9U8D3MF_00011222) - STRLEN(REPLACE(?targetMotifMatchCigarQ9U8D3MF_00011222, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1234), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9U8D3MF_00011222, 1, (STRLEN(?targetMotifMatchCigarQ9U8D3MF_00011222) - STRLEN(REPLACE(?targetMotifMatchCigarQ9U8D3MF_00011222, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1234), '}'), '')))), '[^-]', ''))) AS ?step2235) .
BIND(((?step2235 + ?targetMotifMatchRegionMatchBeginPositionMF_00011223) - 1) AS ?thisPositionOn54) .
BIND(?this AS ?pfs1t236) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfsb50) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfse51) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn53, (?thisPositionOn54 - ?thisPositionOn53)) = 'DEGK')) .
BIND(URI(CONCAT(STR(?this), '#MF_03125a49')) AS ?annotation49) .
BIND(?this AS ?pfs48) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch241 faldo:location ?templateMotifSequenceMatchRegionQ9U8D3242 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9U8D3244 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9U8D3MF_00011237 .
?templateMotifSequenceMatchRegionQ9U8D3242 faldo:begin ?templateMotifSequenceMatchBeginQ9U8D3243 .
?templateMotifSequenceMatchBeginQ9U8D3243 faldo:position ?templateMotifSequenceMatchBeginPositionQ9U8D3238 ;
faldo:reference isoform:Q9U8D3-1 .
?templateMotifSequenceProfileAlignmentOperationQ9U8D3244 edam:has_input signature:MF_00011 ;
rdf:type edam:operation_0300 .
?targetMotifMatch245 faldo:location ?targetMotifMatchRegionMatch246 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00011248 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9U8D3MF_00011239 .
?targetMotifMatchRegionMatch246 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00011247 .
?targetMotifMatchRegionMatchBeginMF_00011247 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00011240 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00011248 edam:has_input signature:MF_00011 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9U8D3MF_00011237, 1, (STRLEN(?templateMotifCigarQ9U8D3MF_00011237) - STRLEN(REPLACE(?templateMotifCigarQ9U8D3MF_00011237, CONCAT('^(?:-*[^-]){', STR(((51 - ?templateMotifSequenceMatchBeginPositionQ9U8D3238) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1249) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9U8D3MF_00011239, 1, (STRLEN(?targetMotifMatchCigarQ9U8D3MF_00011239) - STRLEN(REPLACE(?targetMotifMatchCigarQ9U8D3MF_00011239, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1249), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9U8D3MF_00011239, 1, (STRLEN(?targetMotifMatchCigarQ9U8D3MF_00011239) - STRLEN(REPLACE(?targetMotifMatchCigarQ9U8D3MF_00011239, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1249), '}'), '')))), '[^-]', ''))) AS ?step2250) .
BIND(((?step2250 + ?targetMotifMatchRegionMatchBeginPositionMF_00011240) - 1) AS ?thisPositionOn60) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9U8D3MF_00011237, 1, (STRLEN(?templateMotifCigarQ9U8D3MF_00011237) - STRLEN(REPLACE(?templateMotifCigarQ9U8D3MF_00011237, CONCAT('^(?:-*[^-]){', STR(((54 - ?templateMotifSequenceMatchBeginPositionQ9U8D3238) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1251) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9U8D3MF_00011239, 1, (STRLEN(?targetMotifMatchCigarQ9U8D3MF_00011239) - STRLEN(REPLACE(?targetMotifMatchCigarQ9U8D3MF_00011239, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1251), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9U8D3MF_00011239, 1, (STRLEN(?targetMotifMatchCigarQ9U8D3MF_00011239) - STRLEN(REPLACE(?targetMotifMatchCigarQ9U8D3MF_00011239, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1251), '}'), '')))), '[^-]', ''))) AS ?step2252) .
BIND(((?step2252 + ?targetMotifMatchRegionMatchBeginPositionMF_00011240) - 1) AS ?thisPositionOn61) .
BIND(?this AS ?pfs1t253) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfsb57) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfse58) .
FILTER (REGEX('N[AS]GH', SUBSTR(?thisSequenceValue, ?thisPositionOn60, (?thisPositionOn61 - ?thisPositionOn60)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03125a56')) AS ?annotation56) .
BIND(?this AS ?pfs55) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch258 faldo:location ?templateMotifSequenceMatchRegionQ9U8D3259 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9U8D3261 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9U8D3MF_00011254 .
?templateMotifSequenceMatchRegionQ9U8D3259 faldo:begin ?templateMotifSequenceMatchBeginQ9U8D3260 .
?templateMotifSequenceMatchBeginQ9U8D3260 faldo:position ?templateMotifSequenceMatchBeginPositionQ9U8D3255 ;
faldo:reference isoform:Q9U8D3-1 .
?templateMotifSequenceProfileAlignmentOperationQ9U8D3261 edam:has_input signature:MF_00011 ;
rdf:type edam:operation_0300 .
?targetMotifMatch262 faldo:location ?targetMotifMatchRegionMatch263 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00011265 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9U8D3MF_00011256 .
?targetMotifMatchRegionMatch263 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00011264 .
?targetMotifMatchRegionMatchBeginMF_00011264 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00011257 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00011265 edam:has_input signature:MF_00011 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9U8D3MF_00011254, 1, (STRLEN(?templateMotifCigarQ9U8D3MF_00011254) - STRLEN(REPLACE(?templateMotifCigarQ9U8D3MF_00011254, CONCAT('^(?:-*[^-]){', STR(((307 - ?templateMotifSequenceMatchBeginPositionQ9U8D3255) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1266) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9U8D3MF_00011256, 1, (STRLEN(?targetMotifMatchCigarQ9U8D3MF_00011256) - STRLEN(REPLACE(?targetMotifMatchCigarQ9U8D3MF_00011256, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1266), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9U8D3MF_00011256, 1, (STRLEN(?targetMotifMatchCigarQ9U8D3MF_00011256) - STRLEN(REPLACE(?targetMotifMatchCigarQ9U8D3MF_00011256, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1266), '}'), '')))), '[^-]', ''))) AS ?step2267) .
BIND(((?step2267 + ?targetMotifMatchRegionMatchBeginPositionMF_00011257) - 1) AS ?thisPositionOn68) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9U8D3MF_00011254, 1, (STRLEN(?templateMotifCigarQ9U8D3MF_00011254) - STRLEN(REPLACE(?templateMotifCigarQ9U8D3MF_00011254, CONCAT('^(?:-*[^-]){', STR(((313 - ?templateMotifSequenceMatchBeginPositionQ9U8D3255) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1268) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9U8D3MF_00011256, 1, (STRLEN(?targetMotifMatchCigarQ9U8D3MF_00011256) - STRLEN(REPLACE(?targetMotifMatchCigarQ9U8D3MF_00011256, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1268), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9U8D3MF_00011256, 1, (STRLEN(?targetMotifMatchCigarQ9U8D3MF_00011256) - STRLEN(REPLACE(?targetMotifMatchCigarQ9U8D3MF_00011256, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1268), '}'), '')))), '[^-]', ''))) AS ?step2269) .
BIND(((?step2269 + ?targetMotifMatchRegionMatchBeginPositionMF_00011257) - 1) AS ?thisPositionOn69) .
BIND(?this AS ?pfs1t270) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn68))) AS ?pfsb64) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn69))) AS ?pfse65) .
FILTER (REGEX('[ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX]T[ARNDCQEGHILKMFPSTWYVBZJUOX][KR][ARNDCQEGHILKMFPSTWYVBZJUOX]R', SUBSTR(?thisSequenceValue, ?thisPositionOn68, (?thisPositionOn69 - ?thisPositionOn68)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03125a63')) AS ?annotation63) .
BIND(?this AS ?pfs62) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch275 faldo:location ?templateMotifSequenceMatchRegionQ9U8D3276 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9U8D3278 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9U8D3MF_00011271 .
?templateMotifSequenceMatchRegionQ9U8D3276 faldo:begin ?templateMotifSequenceMatchBeginQ9U8D3277 .
?templateMotifSequenceMatchBeginQ9U8D3277 faldo:position ?templateMotifSequenceMatchBeginPositionQ9U8D3272 ;
faldo:reference isoform:Q9U8D3-1 .
?templateMotifSequenceProfileAlignmentOperationQ9U8D3278 edam:has_input signature:MF_00011 ;
rdf:type edam:operation_0300 .
?targetMotifMatch279 faldo:location ?targetMotifMatchRegionMatch280 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00011282 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9U8D3MF_00011273 .
?targetMotifMatchRegionMatch280 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00011281 .
?targetMotifMatchRegionMatchBeginMF_00011281 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00011274 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00011282 edam:has_input signature:MF_00011 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9U8D3MF_00011271, 1, (STRLEN(?templateMotifCigarQ9U8D3MF_00011271) - STRLEN(REPLACE(?templateMotifCigarQ9U8D3MF_00011271, CONCAT('^(?:-*[^-]){', STR(((26 - ?templateMotifSequenceMatchBeginPositionQ9U8D3272) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1283) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9U8D3MF_00011273, 1, (STRLEN(?targetMotifMatchCigarQ9U8D3MF_00011273) - STRLEN(REPLACE(?targetMotifMatchCigarQ9U8D3MF_00011273, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1283), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9U8D3MF_00011273, 1, (STRLEN(?targetMotifMatchCigarQ9U8D3MF_00011273) - STRLEN(REPLACE(?targetMotifMatchCigarQ9U8D3MF_00011273, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1283), '}'), '')))), '[^-]', ''))) AS ?step2284) .
BIND(((?step2284 + ?targetMotifMatchRegionMatchBeginPositionMF_00011274) - 1) AS ?thisPositionOn74) .
BIND(?thisPositionOn74 AS ?thisPositionOn75) .
BIND(?this AS ?pfs1t285) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn74))) AS ?pfsb72) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn75))) AS ?pfse73) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn74, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_03125a71')) AS ?annotation71) .
BIND(?this AS ?pfs70) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch290 faldo:location ?templateMotifSequenceMatchRegionQ9U8D3291 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9U8D3293 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9U8D3MF_00011286 .
?templateMotifSequenceMatchRegionQ9U8D3291 faldo:begin ?templateMotifSequenceMatchBeginQ9U8D3292 .
?templateMotifSequenceMatchBeginQ9U8D3292 faldo:position ?templateMotifSequenceMatchBeginPositionQ9U8D3287 ;
faldo:reference isoform:Q9U8D3-1 .
?templateMotifSequenceProfileAlignmentOperationQ9U8D3293 edam:has_input signature:MF_00011 ;
rdf:type edam:operation_0300 .
?targetMotifMatch294 faldo:location ?targetMotifMatchRegionMatch295 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00011297 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9U8D3MF_00011288 .
?targetMotifMatchRegionMatch295 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00011296 .
?targetMotifMatchRegionMatchBeginMF_00011296 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00011289 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00011297 edam:has_input signature:MF_00011 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9U8D3MF_00011286, 1, (STRLEN(?templateMotifCigarQ9U8D3MF_00011286) - STRLEN(REPLACE(?templateMotifCigarQ9U8D3MF_00011286, CONCAT('^(?:-*[^-]){', STR(((54 - ?templateMotifSequenceMatchBeginPositionQ9U8D3287) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1298) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9U8D3MF_00011288, 1, (STRLEN(?targetMotifMatchCigarQ9U8D3MF_00011288) - STRLEN(REPLACE(?targetMotifMatchCigarQ9U8D3MF_00011288, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1298), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9U8D3MF_00011288, 1, (STRLEN(?targetMotifMatchCigarQ9U8D3MF_00011288) - STRLEN(REPLACE(?targetMotifMatchCigarQ9U8D3MF_00011288, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1298), '}'), '')))), '[^-]', ''))) AS ?step2299) .
BIND(((?step2299 + ?targetMotifMatchRegionMatchBeginPositionMF_00011289) - 1) AS ?thisPositionOn80) .
BIND(?thisPositionOn80 AS ?thisPositionOn81) .
BIND(?this AS ?pfs1t300) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn80))) AS ?pfsb78) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn81))) AS ?pfse79) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn80, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_03125a77')) AS ?annotation77) .
BIND(?this AS ?pfs76) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch305 faldo:location ?templateMotifSequenceMatchRegionQ9U8D3306 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9U8D3308 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9U8D3MF_00011301 .
?templateMotifSequenceMatchRegionQ9U8D3306 faldo:begin ?templateMotifSequenceMatchBeginQ9U8D3307 .
?templateMotifSequenceMatchBeginQ9U8D3307 faldo:position ?templateMotifSequenceMatchBeginPositionQ9U8D3302 ;
faldo:reference isoform:Q9U8D3-1 .
?templateMotifSequenceProfileAlignmentOperationQ9U8D3308 edam:has_input signature:MF_00011 ;
rdf:type edam:operation_0300 .
?targetMotifMatch309 faldo:location ?targetMotifMatchRegionMatch310 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00011312 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9U8D3MF_00011303 .
?targetMotifMatchRegionMatch310 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00011311 .
?targetMotifMatchRegionMatchBeginMF_00011311 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00011304 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00011312 edam:has_input signature:MF_00011 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9U8D3MF_00011301, 1, (STRLEN(?templateMotifCigarQ9U8D3MF_00011301) - STRLEN(REPLACE(?templateMotifCigarQ9U8D3MF_00011301, CONCAT('^(?:-*[^-]){', STR(((26 - ?templateMotifSequenceMatchBeginPositionQ9U8D3302) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1313) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9U8D3MF_00011303, 1, (STRLEN(?targetMotifMatchCigarQ9U8D3MF_00011303) - STRLEN(REPLACE(?targetMotifMatchCigarQ9U8D3MF_00011303, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1313), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9U8D3MF_00011303, 1, (STRLEN(?targetMotifMatchCigarQ9U8D3MF_00011303) - STRLEN(REPLACE(?targetMotifMatchCigarQ9U8D3MF_00011303, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1313), '}'), '')))), '[^-]', ''))) AS ?step2314) .
BIND(((?step2314 + ?targetMotifMatchRegionMatchBeginPositionMF_00011304) - 1) AS ?thisPositionOn87) .
BIND(?thisPositionOn87 AS ?thisPositionOn88) .
BIND(?this AS ?pfs1t315) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn87))) AS ?pfsb84) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn88))) AS ?pfse85) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn87, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_03125a83')) AS ?annotation83) .
BIND(?this AS ?pfs82) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch320 faldo:location ?templateMotifSequenceMatchRegionQ9U8D3321 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9U8D3323 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9U8D3MF_00011316 .
?templateMotifSequenceMatchRegionQ9U8D3321 faldo:begin ?templateMotifSequenceMatchBeginQ9U8D3322 .
?templateMotifSequenceMatchBeginQ9U8D3322 faldo:position ?templateMotifSequenceMatchBeginPositionQ9U8D3317 ;
faldo:reference isoform:Q9U8D3-1 .
?templateMotifSequenceProfileAlignmentOperationQ9U8D3323 edam:has_input signature:MF_00011 ;
rdf:type edam:operation_0300 .
?targetMotifMatch324 faldo:location ?targetMotifMatchRegionMatch325 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00011327 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9U8D3MF_00011318 .
?targetMotifMatchRegionMatch325 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00011326 .
?targetMotifMatchRegionMatchBeginMF_00011326 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00011319 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00011327 edam:has_input signature:MF_00011 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9U8D3MF_00011316, 1, (STRLEN(?templateMotifCigarQ9U8D3MF_00011316) - STRLEN(REPLACE(?templateMotifCigarQ9U8D3MF_00011316, CONCAT('^(?:-*[^-]){', STR(((53 - ?templateMotifSequenceMatchBeginPositionQ9U8D3317) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1328) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9U8D3MF_00011318, 1, (STRLEN(?targetMotifMatchCigarQ9U8D3MF_00011318) - STRLEN(REPLACE(?targetMotifMatchCigarQ9U8D3MF_00011318, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1328), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9U8D3MF_00011318, 1, (STRLEN(?targetMotifMatchCigarQ9U8D3MF_00011318) - STRLEN(REPLACE(?targetMotifMatchCigarQ9U8D3MF_00011318, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1328), '}'), '')))), '[^-]', ''))) AS ?step2329) .
BIND(((?step2329 + ?targetMotifMatchRegionMatchBeginPositionMF_00011319) - 1) AS ?thisPositionOn94) .
BIND(?thisPositionOn94 AS ?thisPositionOn95) .
BIND(?this AS ?pfs1t330) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn94))) AS ?pfsb91) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn95))) AS ?pfse92) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn94, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_03125a90')) AS ?annotation90) .
BIND(?this AS ?pfs89) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch335 faldo:location ?templateMotifSequenceMatchRegionQ9U8D3336 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9U8D3338 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9U8D3MF_00011331 .
?templateMotifSequenceMatchRegionQ9U8D3336 faldo:begin ?templateMotifSequenceMatchBeginQ9U8D3337 .
?templateMotifSequenceMatchBeginQ9U8D3337 faldo:position ?templateMotifSequenceMatchBeginPositionQ9U8D3332 ;
faldo:reference isoform:Q9U8D3-1 .
?templateMotifSequenceProfileAlignmentOperationQ9U8D3338 edam:has_input signature:MF_00011 ;
rdf:type edam:operation_0300 .
?targetMotifMatch339 faldo:location ?targetMotifMatchRegionMatch340 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00011342 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9U8D3MF_00011333 .
?targetMotifMatchRegionMatch340 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00011341 .
?targetMotifMatchRegionMatchBeginMF_00011341 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00011334 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00011342 edam:has_input signature:MF_00011 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9U8D3MF_00011331, 1, (STRLEN(?templateMotifCigarQ9U8D3MF_00011331) - STRLEN(REPLACE(?templateMotifCigarQ9U8D3MF_00011331, CONCAT('^(?:-*[^-]){', STR(((141 - ?templateMotifSequenceMatchBeginPositionQ9U8D3332) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1343) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9U8D3MF_00011333, 1, (STRLEN(?targetMotifMatchCigarQ9U8D3MF_00011333) - STRLEN(REPLACE(?targetMotifMatchCigarQ9U8D3MF_00011333, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1343), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9U8D3MF_00011333, 1, (STRLEN(?targetMotifMatchCigarQ9U8D3MF_00011333) - STRLEN(REPLACE(?targetMotifMatchCigarQ9U8D3MF_00011333, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1343), '}'), '')))), '[^-]', ''))) AS ?step2344) .
BIND(((?step2344 + ?targetMotifMatchRegionMatchBeginPositionMF_00011334) - 1) AS ?thisPositionOn101) .
BIND(?thisPositionOn101 AS ?thisPositionOn102) .
BIND(?this AS ?pfs1t345) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn101))) AS ?pfsb98) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn102))) AS ?pfse99) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn101, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_03125a97')) AS ?annotation97) .
BIND(?this AS ?pfs96) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch350 faldo:location ?templateMotifSequenceMatchRegionQ9U8D3351 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9U8D3353 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9U8D3MF_00011346 .
?templateMotifSequenceMatchRegionQ9U8D3351 faldo:begin ?templateMotifSequenceMatchBeginQ9U8D3352 .
?templateMotifSequenceMatchBeginQ9U8D3352 faldo:position ?templateMotifSequenceMatchBeginPositionQ9U8D3347 ;
faldo:reference isoform:Q9U8D3-1 .
?templateMotifSequenceProfileAlignmentOperationQ9U8D3353 edam:has_input signature:MF_00011 ;
rdf:type edam:operation_0300 .
?targetMotifMatch354 faldo:location ?targetMotifMatchRegionMatch355 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00011357 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9U8D3MF_00011348 .
?targetMotifMatchRegionMatch355 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00011356 .
?targetMotifMatchRegionMatchBeginMF_00011356 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00011349 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00011357 edam:has_input signature:MF_00011 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9U8D3MF_00011346, 1, (STRLEN(?templateMotifCigarQ9U8D3MF_00011346) - STRLEN(REPLACE(?templateMotifCigarQ9U8D3MF_00011346, CONCAT('^(?:-*[^-]){', STR(((155 - ?templateMotifSequenceMatchBeginPositionQ9U8D3347) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1358) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9U8D3MF_00011348, 1, (STRLEN(?targetMotifMatchCigarQ9U8D3MF_00011348) - STRLEN(REPLACE(?targetMotifMatchCigarQ9U8D3MF_00011348, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1358), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9U8D3MF_00011348, 1, (STRLEN(?targetMotifMatchCigarQ9U8D3MF_00011348) - STRLEN(REPLACE(?targetMotifMatchCigarQ9U8D3MF_00011348, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1358), '}'), '')))), '[^-]', ''))) AS ?step2359) .
BIND(((?step2359 + ?targetMotifMatchRegionMatchBeginPositionMF_00011349) - 1) AS ?thisPositionOn108) .
BIND(?thisPositionOn108 AS ?thisPositionOn109) .
BIND(?this AS ?pfs1t360) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn108))) AS ?pfsb105) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn109))) AS ?pfse106) .
FILTER (REGEX('[KR]', SUBSTR(?thisSequenceValue, ?thisPositionOn108, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_03125a104')) AS ?annotation104) .
BIND(?this AS ?pfs103) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch365 faldo:location ?templateMotifSequenceMatchRegionQ9U8D3366 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9U8D3368 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9U8D3MF_00011361 .
?templateMotifSequenceMatchRegionQ9U8D3366 faldo:begin ?templateMotifSequenceMatchBeginQ9U8D3367 .
?templateMotifSequenceMatchBeginQ9U8D3367 faldo:position ?templateMotifSequenceMatchBeginPositionQ9U8D3362 ;
faldo:reference isoform:Q9U8D3-1 .
?templateMotifSequenceProfileAlignmentOperationQ9U8D3368 edam:has_input signature:MF_00011 ;
rdf:type edam:operation_0300 .
?targetMotifMatch369 faldo:location ?targetMotifMatchRegionMatch370 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00011372 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9U8D3MF_00011363 .
?targetMotifMatchRegionMatch370 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00011371 .
?targetMotifMatchRegionMatchBeginMF_00011371 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00011364 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00011372 edam:has_input signature:MF_00011 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9U8D3MF_00011361, 1, (STRLEN(?templateMotifCigarQ9U8D3MF_00011361) - STRLEN(REPLACE(?templateMotifCigarQ9U8D3MF_00011361, CONCAT('^(?:-*[^-]){', STR(((232 - ?templateMotifSequenceMatchBeginPositionQ9U8D3362) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1373) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9U8D3MF_00011363, 1, (STRLEN(?targetMotifMatchCigarQ9U8D3MF_00011363) - STRLEN(REPLACE(?targetMotifMatchCigarQ9U8D3MF_00011363, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1373), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9U8D3MF_00011363, 1, (STRLEN(?targetMotifMatchCigarQ9U8D3MF_00011363) - STRLEN(REPLACE(?targetMotifMatchCigarQ9U8D3MF_00011363, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1373), '}'), '')))), '[^-]', ''))) AS ?step2374) .
BIND(((?step2374 + ?targetMotifMatchRegionMatchBeginPositionMF_00011364) - 1) AS ?thisPositionOn115) .
BIND(?thisPositionOn115 AS ?thisPositionOn116) .
BIND(?this AS ?pfs1t375) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn115))) AS ?pfsb112) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn116))) AS ?pfse113) .
FILTER (REGEX('[QN]', SUBSTR(?thisSequenceValue, ?thisPositionOn115, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_03125a111')) AS ?annotation111) .
BIND(?this AS ?pfs110) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch380 faldo:location ?templateMotifSequenceMatchRegionQ9U8D3381 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9U8D3383 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9U8D3MF_00011376 .
?templateMotifSequenceMatchRegionQ9U8D3381 faldo:begin ?templateMotifSequenceMatchBeginQ9U8D3382 .
?templateMotifSequenceMatchBeginQ9U8D3382 faldo:position ?templateMotifSequenceMatchBeginPositionQ9U8D3377 ;
faldo:reference isoform:Q9U8D3-1 .
?templateMotifSequenceProfileAlignmentOperationQ9U8D3383 edam:has_input signature:MF_00011 ;
rdf:type edam:operation_0300 .
?targetMotifMatch384 faldo:location ?targetMotifMatchRegionMatch385 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00011387 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9U8D3MF_00011378 .
?targetMotifMatchRegionMatch385 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00011386 .
?targetMotifMatchRegionMatchBeginMF_00011386 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00011379 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00011387 edam:has_input signature:MF_00011 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9U8D3MF_00011376, 1, (STRLEN(?templateMotifCigarQ9U8D3MF_00011376) - STRLEN(REPLACE(?templateMotifCigarQ9U8D3MF_00011376, CONCAT('^(?:-*[^-]){', STR(((247 - ?templateMotifSequenceMatchBeginPositionQ9U8D3377) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1388) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9U8D3MF_00011378, 1, (STRLEN(?targetMotifMatchCigarQ9U8D3MF_00011378) - STRLEN(REPLACE(?targetMotifMatchCigarQ9U8D3MF_00011378, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1388), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9U8D3MF_00011378, 1, (STRLEN(?targetMotifMatchCigarQ9U8D3MF_00011378) - STRLEN(REPLACE(?targetMotifMatchCigarQ9U8D3MF_00011378, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1388), '}'), '')))), '[^-]', ''))) AS ?step2389) .
BIND(((?step2389 + ?targetMotifMatchRegionMatchBeginPositionMF_00011379) - 1) AS ?thisPositionOn122) .
BIND(?thisPositionOn122 AS ?thisPositionOn123) .
BIND(?this AS ?pfs1t390) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn122))) AS ?pfsb119) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn123))) AS ?pfse120) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn122, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_03125a118')) AS ?annotation118) .
BIND(?this AS ?pfs117) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch395 faldo:location ?templateMotifSequenceMatchRegionQ9U8D3396 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9U8D3398 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9U8D3MF_00011391 .
?templateMotifSequenceMatchRegionQ9U8D3396 faldo:begin ?templateMotifSequenceMatchBeginQ9U8D3397 .
?templateMotifSequenceMatchBeginQ9U8D3397 faldo:position ?templateMotifSequenceMatchBeginPositionQ9U8D3392 ;
faldo:reference isoform:Q9U8D3-1 .
?templateMotifSequenceProfileAlignmentOperationQ9U8D3398 edam:has_input signature:MF_00011 ;
rdf:type edam:operation_0300 .
?targetMotifMatch399 faldo:location ?targetMotifMatchRegionMatch400 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00011402 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9U8D3MF_00011393 .
?targetMotifMatchRegionMatch400 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00011401 .
?targetMotifMatchRegionMatchBeginMF_00011401 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00011394 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00011402 edam:has_input signature:MF_00011 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9U8D3MF_00011391, 1, (STRLEN(?templateMotifCigarQ9U8D3MF_00011391) - STRLEN(REPLACE(?templateMotifCigarQ9U8D3MF_00011391, CONCAT('^(?:-*[^-]){', STR(((311 - ?templateMotifSequenceMatchBeginPositionQ9U8D3392) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1403) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9U8D3MF_00011393, 1, (STRLEN(?targetMotifMatchCigarQ9U8D3MF_00011393) - STRLEN(REPLACE(?targetMotifMatchCigarQ9U8D3MF_00011393, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1403), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9U8D3MF_00011393, 1, (STRLEN(?targetMotifMatchCigarQ9U8D3MF_00011393) - STRLEN(REPLACE(?targetMotifMatchCigarQ9U8D3MF_00011393, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1403), '}'), '')))), '[^-]', ''))) AS ?step2404) .
BIND(((?step2404 + ?targetMotifMatchRegionMatchBeginPositionMF_00011394) - 1) AS ?thisPositionOn129) .
BIND(?thisPositionOn129 AS ?thisPositionOn130) .
BIND(?this AS ?pfs1t405) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn129))) AS ?pfsb126) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn130))) AS ?pfse127) .
FILTER (REGEX('[KR]', SUBSTR(?thisSequenceValue, ?thisPositionOn129, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_03125a125')) AS ?annotation125) .
BIND(?this AS ?pfs124) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch410 faldo:location ?templateMotifSequenceMatchRegionQ9U8D3411 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9U8D3413 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9U8D3MF_00011406 .
?templateMotifSequenceMatchRegionQ9U8D3411 faldo:begin ?templateMotifSequenceMatchBeginQ9U8D3412 .
?templateMotifSequenceMatchBeginQ9U8D3412 faldo:position ?templateMotifSequenceMatchBeginPositionQ9U8D3407 ;
faldo:reference isoform:Q9U8D3-1 .
?templateMotifSequenceProfileAlignmentOperationQ9U8D3413 edam:has_input signature:MF_00011 ;
rdf:type edam:operation_0300 .
?targetMotifMatch414 faldo:location ?targetMotifMatchRegionMatch415 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00011417 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9U8D3MF_00011408 .
?targetMotifMatchRegionMatch415 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00011416 .
?targetMotifMatchRegionMatchBeginMF_00011416 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00011409 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00011417 edam:has_input signature:MF_00011 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9U8D3MF_00011406, 1, (STRLEN(?templateMotifCigarQ9U8D3MF_00011406) - STRLEN(REPLACE(?templateMotifCigarQ9U8D3MF_00011406, CONCAT('^(?:-*[^-]){', STR(((313 - ?templateMotifSequenceMatchBeginPositionQ9U8D3407) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1418) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9U8D3MF_00011408, 1, (STRLEN(?targetMotifMatchCigarQ9U8D3MF_00011408) - STRLEN(REPLACE(?targetMotifMatchCigarQ9U8D3MF_00011408, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1418), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9U8D3MF_00011408, 1, (STRLEN(?targetMotifMatchCigarQ9U8D3MF_00011408) - STRLEN(REPLACE(?targetMotifMatchCigarQ9U8D3MF_00011408, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1418), '}'), '')))), '[^-]', ''))) AS ?step2419) .
BIND(((?step2419 + ?targetMotifMatchRegionMatchBeginPositionMF_00011409) - 1) AS ?thisPositionOn136) .
BIND(?thisPositionOn136 AS ?thisPositionOn137) .
BIND(?this AS ?pfs1t420) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn136))) AS ?pfsb133) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn137))) AS ?pfse134) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn136, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_03125a132')) AS ?annotation132) .
BIND(?this AS ?pfs131) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch425 faldo:location ?templateMotifSequenceMatchRegionQ9U8D3426 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9U8D3428 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9U8D3MF_00011421 .
?templateMotifSequenceMatchRegionQ9U8D3426 faldo:begin ?templateMotifSequenceMatchBeginQ9U8D3427 .
?templateMotifSequenceMatchBeginQ9U8D3427 faldo:position ?templateMotifSequenceMatchBeginPositionQ9U8D3422 ;
faldo:reference isoform:Q9U8D3-1 .
?templateMotifSequenceProfileAlignmentOperationQ9U8D3428 edam:has_input signature:MF_00011 ;
rdf:type edam:operation_0300 .
?targetMotifMatch429 faldo:location ?targetMotifMatchRegionMatch430 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00011432 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9U8D3MF_00011423 .
?targetMotifMatchRegionMatch430 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00011431 .
?targetMotifMatchRegionMatchBeginMF_00011431 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00011424 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00011432 edam:has_input signature:MF_00011 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:5820 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9U8D3MF_00011421, 1, (STRLEN(?templateMotifCigarQ9U8D3MF_00011421) - STRLEN(REPLACE(?templateMotifCigarQ9U8D3MF_00011421, CONCAT('^(?:-*[^-]){', STR(((62 - ?templateMotifSequenceMatchBeginPositionQ9U8D3422) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1433) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9U8D3MF_00011423, 1, (STRLEN(?targetMotifMatchCigarQ9U8D3MF_00011423) - STRLEN(REPLACE(?targetMotifMatchCigarQ9U8D3MF_00011423, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1433), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9U8D3MF_00011423, 1, (STRLEN(?targetMotifMatchCigarQ9U8D3MF_00011423) - STRLEN(REPLACE(?targetMotifMatchCigarQ9U8D3MF_00011423, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1433), '}'), '')))), '[^-]', ''))) AS ?step2434) .
BIND(((?step2434 + ?targetMotifMatchRegionMatchBeginPositionMF_00011424) - 1) AS ?thisPositionOn143) .
BIND(?thisPositionOn143 AS ?thisPositionOn144) .
BIND(?this AS ?pfs2t435) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn143))) AS ?pfsb140) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn144))) AS ?pfse141) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn143, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_03125a139')) AS ?annotation139) .
BIND(?this AS ?pfs138) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch440 faldo:location ?templateMotifSequenceMatchRegionQ9U8D3441 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9U8D3443 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9U8D3MF_00011436 .
?templateMotifSequenceMatchRegionQ9U8D3441 faldo:begin ?templateMotifSequenceMatchBeginQ9U8D3442 .
?templateMotifSequenceMatchBeginQ9U8D3442 faldo:position ?templateMotifSequenceMatchBeginPositionQ9U8D3437 ;
faldo:reference isoform:Q9U8D3-1 .
?templateMotifSequenceProfileAlignmentOperationQ9U8D3443 edam:has_input signature:MF_00011 ;
rdf:type edam:operation_0300 .
?targetMotifMatch444 faldo:location ?targetMotifMatchRegionMatch445 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00011447 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9U8D3MF_00011438 .
?targetMotifMatchRegionMatch445 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00011446 .
?targetMotifMatchRegionMatchBeginMF_00011446 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00011439 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00011447 edam:has_input signature:MF_00011 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:5820 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9U8D3MF_00011436, 1, (STRLEN(?templateMotifCigarQ9U8D3MF_00011436) - STRLEN(REPLACE(?templateMotifCigarQ9U8D3MF_00011436, CONCAT('^(?:-*[^-]){', STR(((307 - ?templateMotifSequenceMatchBeginPositionQ9U8D3437) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1448) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9U8D3MF_00011438, 1, (STRLEN(?targetMotifMatchCigarQ9U8D3MF_00011438) - STRLEN(REPLACE(?targetMotifMatchCigarQ9U8D3MF_00011438, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1448), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9U8D3MF_00011438, 1, (STRLEN(?targetMotifMatchCigarQ9U8D3MF_00011438) - STRLEN(REPLACE(?targetMotifMatchCigarQ9U8D3MF_00011438, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1448), '}'), '')))), '[^-]', ''))) AS ?step2449) .
BIND(((?step2449 + ?targetMotifMatchRegionMatchBeginPositionMF_00011439) - 1) AS ?thisPositionOn150) .
BIND(?thisPositionOn150 AS ?thisPositionOn151) .
BIND(?this AS ?pfs2t450) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn150))) AS ?pfsb147) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn151))) AS ?pfse148) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn150, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_03125a146')) AS ?annotation146) .
BIND(?this AS ?pfs145) .
}
OPTIONAL {
?this a up:Protein .
{
?this up:encodedIn up:Plastid .
} UNION {
?this up:encodedIn up:Organellar_chromatophore .
}
BIND(?this AS ?case6) .
BIND(URI(CONCAT(STR(?this), '#MF_03125a7')) AS ?name7) .
BIND(URI(CONCAT(STR(?this), '#MF_03125a8')) AS ?name8) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:33090 .
BIND(?this AS ?case9) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:4930 .
BIND(?this AS ?case10) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:6237 .
BIND(?this AS ?case11) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:33090 .
FILTER (! (EXISTS {
{
?this up:encodedIn up:Plastid .
} UNION {
?this up:encodedIn up:Organellar_chromatophore .
}
})) .
BIND(?this AS ?case12) .
BIND(URI(CONCAT(STR(?this), '#MF_03125a13')) AS ?name13) .
BIND(URI(CONCAT(STR(?this), '#MF_03125a14')) AS ?name14) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
{
?this up:encodedIn up:Plastid .
} UNION {
?this up:encodedIn up:Organellar_chromatophore .
}
})) .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:33090 .
})) .
BIND(?this AS ?case15) .
BIND(URI(CONCAT(STR(?this), '#MF_03125a16')) AS ?name16) .
BIND(URI(CONCAT(STR(?this), '#MF_03125a17')) AS ?name17) .
}
OPTIONAL {
?this a up:Protein .
VALUES ?supertaxon451 {taxon:5794 taxon:5658 taxon:5690}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon451 .
BIND(?this AS ?case18) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
VALUES ?supertaxon452 {taxon:5794 taxon:5658 taxon:5690}
?thisOrganism rdfs:subClassOf+ ?supertaxon452 .
})) .
BIND(?this AS ?case19) .
}
}
"xsd:string |
