| http://purl.uniprot.org/unirules/MF_03127#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:830700 up:source unirule:MF_03127 .
_:830701 up:source unirule:MF_03127 .
_:830702 up:source unirule:MF_03127 .
_:830703 up:source unirule:MF_03127 .
_:830704 up:source unirule:MF_03127 .
_:830705 up:source unirule:MF_03127 .
_:830706 up:source unirule:MF_03127 .
_:830707 up:source unirule:MF_03127 .
_:830708 up:source unirule:MF_03127 .
_:830709 up:source unirule:MF_03127 .
_:830710 up:source unirule:MF_03127 .
_:830711 up:source unirule:MF_03127 .
_:830712 up:source unirule:MF_03127 .
_:830713 up:source unirule:MF_03127 .
_:830714 up:source unirule:MF_03127 .
_:830715 up:source unirule:MF_03127 .
_:830716 up:source unirule:MF_03127 .
_:830717 up:source unirule:MF_03127 .
_:830718 up:source unirule:MF_03127 .
_:830719 up:source unirule:MF_03127 .
_:830720 up:source unirule:MF_03127 .
_:830721 up:source unirule:MF_03127 .
_:830722 up:source unirule:MF_03127 .
_:830723 up:source unirule:MF_03127 .
_:830724 up:source unirule:MF_03127 .
_:830725 up:source unirule:MF_03127 .
_:830726 up:source unirule:MF_03127 .
_:830727 up:source unirule:MF_03127 .
_:830728 up:source unirule:MF_03127 .
_:830729 up:source unirule:MF_03127 .
_:830730 up:source unirule:MF_03127 .
_:830731 up:source unirule:MF_03127 .
_:830732 up:source unirule:MF_03127 .
_:830733 up:source unirule:MF_03127 .
_:830734 up:source unirule:MF_03127 .
_:830735 up:source unirule:MF_03127 .
_:830736 up:source unirule:MF_03127 .
_:830737 up:source unirule:MF_03127 .
_:830738 up:source unirule:MF_03127 .
_:830739 up:source unirule:MF_03127 .
_:830740 up:source unirule:MF_03127 .
_:830741 up:source unirule:MF_03127 .
_:830742 up:source unirule:MF_03127 .
_:830743 up:source unirule:MF_03127 .
_:830744 up:source unirule:MF_03127 .
_:830745 up:source unirule:MF_03127 .
?this up:alternativeName ?name1 ,
?name2 ,
?name3 ;
up:annotation ?annotation5 ,
?annotation6 ,
?annotation8 ,
?annotation9 ,
?annotation10 ,
?annotation11 ,
?annotation13 ;
up:classifiedWith GO:0000287 ,
GO:0004019 ,
GO:0005525 ,
GO:0005737 ,
GO:0044208 ,
keyword:342 ,
keyword:436 ,
keyword:460 ,
keyword:479 ,
keyword:547 ,
keyword:658 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '6.3.4.4' ;
up:fullName 'Adenylosuccinate synthetase isozyme 2' ;
up:shortName 'AMPSase 2' ,
'AdSS 2' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Adenylosuccinate synthetase, acidic isozyme' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'Adenylosuccinate synthetase, liver isozyme' ;
up:shortName 'L-type adenylosuccinate synthetase' ;
rdf:type up:Structured_Name .
?name3 up:fullName 'IMP--aspartate ligase 2' ;
rdf:type up:Structured_Name .
?gene4 skos:altLabel 'ADSS2' ;
skos:prefLabel 'ADSS' .
?annotation5 a up:Function_Annotation ;
rdfs:comment 'Plays an important role in the de novo pathway and in the salvage pathway of purine nucleotide biosynthesis. Catalyzes the first commited step in the biosynthesis of AMP from IMP.' .
?annotation6 up:activity ?activity7 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity7 up:catalyticActivity ;
up:enzymeClass .
?annotation8 up:cofactor chebi:18420 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 1 Mg(2+) ion per subunit.' .
?annotation9 a up:Pathway_Annotation ;
rdfs:comment 'Purine metabolism; AMP biosynthesis via de novo pathway; AMP from IMP: step 1/2.' .
?annotation10 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation11 a up:Subcellular_Location_Annotation .
?annotation11li12 up:cellularComponent .
?annotation13 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the adenylosuccinate synthetase family.' .
?case14 up:classifiedWith keyword:7 .
?pfs15 up:annotation ?annotation16 ,
?annotation21 ,
?annotation26 .
?annotation16 faldo:begin ?pfsb17 ;
faldo:end ?pfse18 ;
rdf:type up:Initiator_Methionine_Annotation ;
rdfs:comment 'Removed' .
?pfsb17 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfse18 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?annotation21 faldo:begin ?pfsb22 ;
faldo:end ?pfse23 ;
rdf:type up:Chain_Annotation ;
rdfs:comment 'Adenylosuccinate synthetase isozyme 2' .
?pfsb22 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfse23 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?annotation26 faldo:begin ?pfsb27 ;
faldo:end ?pfse28 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'N-acetylalanine' .
?pfsb27 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?pfse28 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?pfs31 up:annotation ?annotation32 .
?annotation32 faldo:begin ?pfsb33 ;
faldo:end ?pfse34 ;
up:ligand ?ligand35 ;
rdf:type up:Binding_Site_Annotation .
?pfsb33 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?pfse34 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?ligand35 rdfs:subClassOf chebi:37565 .
?pfs38 up:annotation ?annotation39 .
?annotation39 faldo:begin ?pfsb40 ;
faldo:end ?pfse41 ;
up:ligand ?ligand42 ;
rdf:type up:Binding_Site_Annotation .
?pfsb40 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?pfse41 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?ligand42 rdfs:subClassOf chebi:37565 .
?pfs45 up:annotation ?annotation46 .
?annotation46 faldo:begin ?pfsb47 ;
faldo:end ?pfse48 ;
up:ligand ?ligand49 ;
rdf:type up:Binding_Site_Annotation .
?pfsb47 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?pfse48 faldo:position ?thisPositionOn51 ;
rdf:type faldo:ExactPosition .
?ligand49 rdfs:subClassOf chebi:37565 .
?pfs52 up:annotation ?annotation53 .
?annotation53 faldo:begin ?pfsb54 ;
faldo:end ?pfse55 ;
up:ligand ?ligand56 ;
rdf:type up:Binding_Site_Annotation .
?pfsb54 faldo:position ?thisPositionOn57 ;
rdf:type faldo:ExactPosition .
?pfse55 faldo:position ?thisPositionOn58 ;
rdf:type faldo:ExactPosition .
?ligand56 rdfs:subClassOf chebi:37565 .
?pfs59 up:annotation ?annotation60 .
?annotation60 faldo:begin ?pfsb61 ;
faldo:end ?pfse62 ;
up:ligand ?ligand63 ;
rdf:type up:Binding_Site_Annotation .
?pfsb61 faldo:position ?thisPositionOn64 ;
rdf:type faldo:ExactPosition .
?pfse62 faldo:position ?thisPositionOn65 ;
rdf:type faldo:ExactPosition .
?ligand63 rdfs:subClassOf chebi:58053 .
?pfs66 up:annotation ?annotation67 .
?annotation67 faldo:begin ?pfsb68 ;
faldo:end ?pfse69 ;
up:ligand ?ligand70 ;
rdf:type up:Binding_Site_Annotation .
?pfsb68 faldo:position ?thisPositionOn71 ;
rdf:type faldo:ExactPosition .
?pfse69 faldo:position ?thisPositionOn72 ;
rdf:type faldo:ExactPosition .
?ligand70 rdfs:subClassOf chebi:58053 .
?pfs73 up:annotation ?annotation74 .
?annotation74 faldo:begin ?pfsb75 ;
faldo:end ?pfse76 ;
up:ligand ?ligand77 ;
rdf:type up:Binding_Site_Annotation .
?pfsb75 faldo:position ?thisPositionOn79 ;
rdf:type faldo:ExactPosition .
?pfse76 faldo:position ?thisPositionOn80 ;
rdf:type faldo:ExactPosition .
?ligand77 rdfs:subClassOf ?molecule78 .
?molecule78 rdfs:label 'substrate' .
?pfs81 up:annotation ?annotation82 .
?annotation82 faldo:begin ?pfsb83 ;
faldo:end ?pfse84 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb83 faldo:position ?thisPositionOn85 ;
rdf:type faldo:ExactPosition .
?pfse84 faldo:position ?thisPositionOn86 ;
rdf:type faldo:ExactPosition .
?pfs87 up:annotation ?annotation88 .
?annotation88 faldo:begin ?pfsb89 ;
faldo:end ?pfse90 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton donor' .
?pfsb89 faldo:position ?thisPositionOn91 ;
rdf:type faldo:ExactPosition .
?pfse90 faldo:position ?thisPositionOn92 ;
rdf:type faldo:ExactPosition .
?pfs93 up:annotation ?annotation94 .
?annotation94 faldo:begin ?pfsb95 ;
faldo:end ?pfse96 ;
up:ligand ?ligand97 ;
rdf:type up:Binding_Site_Annotation .
?pfsb95 faldo:position ?thisPositionOn98 ;
rdf:type faldo:ExactPosition .
?pfse96 faldo:position ?thisPositionOn99 ;
rdf:type faldo:ExactPosition .
?ligand97 rdfs:subClassOf chebi:18420 .
?pfs100 up:annotation ?annotation101 .
?annotation101 faldo:begin ?pfsb102 ;
faldo:end ?pfse103 ;
up:ligand ?ligand104 ;
rdf:type up:Binding_Site_Annotation .
?pfsb102 faldo:position ?thisPositionOn105 ;
rdf:type faldo:ExactPosition .
?pfse103 faldo:position ?thisPositionOn106 ;
rdf:type faldo:ExactPosition .
?ligand104 rdfs:subClassOf chebi:18420 .
?pfs107 up:annotation ?annotation108 .
?annotation108 faldo:begin ?pfsb109 ;
faldo:end ?pfse110 ;
up:ligand ?ligand111 ;
rdf:type up:Binding_Site_Annotation .
?pfsb109 faldo:position ?thisPositionOn113 ;
rdf:type faldo:ExactPosition .
?pfse110 faldo:position ?thisPositionOn114 ;
rdf:type faldo:ExactPosition .
?ligand111 rdfs:subClassOf ?molecule112 .
?molecule112 rdfs:label 'substrate' .
?pfs115 up:annotation ?annotation116 .
?annotation116 faldo:begin ?pfsb117 ;
faldo:end ?pfse118 ;
up:ligand ?ligand119 ;
rdf:type up:Binding_Site_Annotation .
?pfsb117 faldo:position ?thisPositionOn120 ;
rdf:type faldo:ExactPosition .
?pfse118 faldo:position ?thisPositionOn121 ;
rdf:type faldo:ExactPosition .
?ligand119 rdfs:subClassOf chebi:58053 .
?pfs122 up:annotation ?annotation123 .
?annotation123 faldo:begin ?pfsb124 ;
faldo:end ?pfse125 ;
up:ligand ?ligand126 ;
rdf:type up:Binding_Site_Annotation .
?pfsb124 faldo:position ?thisPositionOn127 ;
rdf:type faldo:ExactPosition .
?pfse125 faldo:position ?thisPositionOn128 ;
rdf:type faldo:ExactPosition .
?ligand126 rdfs:subClassOf chebi:58053 .
?pfs129 up:annotation ?annotation130 .
?annotation130 faldo:begin ?pfsb131 ;
faldo:end ?pfse132 ;
up:ligand ?ligand133 ;
rdf:type up:Binding_Site_Annotation .
?pfsb131 faldo:position ?thisPositionOn134 ;
rdf:type faldo:ExactPosition .
?pfse132 faldo:position ?thisPositionOn135 ;
rdf:type faldo:ExactPosition .
?ligand133 rdfs:subClassOf chebi:58053 .
?pfs136 up:annotation ?annotation137 .
?annotation137 faldo:begin ?pfsb138 ;
faldo:end ?pfse139 ;
up:ligand ?ligand140 ;
rdf:type up:Binding_Site_Annotation .
?pfsb138 faldo:position ?thisPositionOn141 ;
rdf:type faldo:ExactPosition .
?pfse139 faldo:position ?thisPositionOn142 ;
rdf:type faldo:ExactPosition .
?ligand140 rdfs:subClassOf chebi:58053 .
?pfs143 up:annotation ?annotation144 .
?annotation144 faldo:begin ?pfsb145 ;
faldo:end ?pfse146 ;
up:ligand ?ligand147 ;
rdf:type up:Binding_Site_Annotation .
?pfsb145 faldo:position ?thisPositionOn148 ;
rdf:type faldo:ExactPosition .
?pfse146 faldo:position ?thisPositionOn149 ;
rdf:type faldo:ExactPosition .
?ligand147 rdfs:subClassOf chebi:58053 .
?pfs150 up:annotation ?annotation151 .
?annotation151 faldo:begin ?pfsb152 ;
faldo:end ?pfse153 ;
up:ligand ?ligand154 ;
rdf:type up:Binding_Site_Annotation .
?pfsb152 faldo:position ?thisPositionOn155 ;
rdf:type faldo:ExactPosition .
?pfse153 faldo:position ?thisPositionOn156 ;
rdf:type faldo:ExactPosition .
?ligand154 rdfs:subClassOf chebi:37565 .
_:830746 a rdf:Statement ;
up:attribution _:830700 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
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up:attribution _:830701 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:830748 a rdf:Statement ;
up:attribution _:830702 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:830749 a rdf:Statement ;
up:attribution _:830703 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name3 .
_:830750 a rdf:Statement ;
up:attribution _:830704 ;
rdf:subject ?gene4 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene4 .
_:830751 a rdf:Statement ;
up:attribution _:830705 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
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rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
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rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
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rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
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rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
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rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
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rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
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up:attribution _:830712 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:830759 a rdf:Statement ;
up:attribution _:830713 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:342 .
_:830760 a rdf:Statement ;
up:attribution _:830714 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:436 .
_:830761 a rdf:Statement ;
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rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:830762 a rdf:Statement ;
up:attribution _:830716 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:830763 a rdf:Statement ;
up:attribution _:830717 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:830764 a rdf:Statement ;
up:attribution _:830718 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:658 .
_:830765 a rdf:Statement ;
up:attribution _:830719 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004019 .
_:830766 a rdf:Statement ;
up:attribution _:830720 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005525 .
_:830767 a rdf:Statement ;
up:attribution _:830721 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000287 .
_:830768 a rdf:Statement ;
up:attribution _:830722 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0044208 .
_:830769 a rdf:Statement ;
up:attribution _:830723 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:830770 a rdf:Statement ;
up:attribution _:830724 ;
rdf:subject ?case14 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:7 .
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up:source unirule:MF_03127 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
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rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
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up:source unirule:MF_03127 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
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rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
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up:source unirule:MF_03127 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
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rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
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up:source unirule:MF_03127 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
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up:attribution _:830728 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
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up:source unirule:MF_03127 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
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rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
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rdf:subject ?pfs45 ;
rdf:predicate up:annotation ;
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rdf:subject ?pfs45 ;
rdf:predicate up:annotation ;
rdf:object ?annotation46 .
_:830783 a rdf:Statement ;
up:source unirule:MF_03127 ;
rdf:subject ?pfs52 ;
rdf:predicate up:annotation ;
rdf:object ?annotation53 .
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rdf:subject ?pfs52 ;
rdf:predicate up:annotation ;
rdf:object ?annotation53 .
_:830785 a rdf:Statement ;
up:source unirule:MF_03127 ;
rdf:subject ?pfs59 ;
rdf:predicate up:annotation ;
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rdf:subject ?pfs59 ;
rdf:predicate up:annotation ;
rdf:object ?annotation60 .
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up:source unirule:MF_03127 ;
rdf:subject ?pfs66 ;
rdf:predicate up:annotation ;
rdf:object ?annotation67 .
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rdf:subject ?pfs66 ;
rdf:predicate up:annotation ;
rdf:object ?annotation67 .
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up:source unirule:MF_03127 ;
rdf:subject ?pfs73 ;
rdf:predicate up:annotation ;
rdf:object ?annotation74 .
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rdf:subject ?pfs73 ;
rdf:predicate up:annotation ;
rdf:object ?annotation74 .
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up:source unirule:MF_03127 ;
rdf:subject ?pfs81 ;
rdf:predicate up:annotation ;
rdf:object ?annotation82 .
_:830792 a rdf:Statement ;
up:attribution _:830735 ;
rdf:subject ?pfs81 ;
rdf:predicate up:annotation ;
rdf:object ?annotation82 .
_:830793 a rdf:Statement ;
up:source unirule:MF_03127 ;
rdf:subject ?pfs87 ;
rdf:predicate up:annotation ;
rdf:object ?annotation88 .
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up:attribution _:830736 ;
rdf:subject ?pfs87 ;
rdf:predicate up:annotation ;
rdf:object ?annotation88 .
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up:source unirule:MF_03127 ;
rdf:subject ?pfs93 ;
rdf:predicate up:annotation ;
rdf:object ?annotation94 .
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rdf:subject ?pfs93 ;
rdf:predicate up:annotation ;
rdf:object ?annotation94 .
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up:source unirule:MF_03127 ;
rdf:subject ?pfs100 ;
rdf:predicate up:annotation ;
rdf:object ?annotation101 .
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up:attribution _:830738 ;
rdf:subject ?pfs100 ;
rdf:predicate up:annotation ;
rdf:object ?annotation101 .
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up:source unirule:MF_03127 ;
rdf:subject ?pfs107 ;
rdf:predicate up:annotation ;
rdf:object ?annotation108 .
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up:attribution _:830739 ;
rdf:subject ?pfs107 ;
rdf:predicate up:annotation ;
rdf:object ?annotation108 .
_:830801 a rdf:Statement ;
up:source unirule:MF_03127 ;
rdf:subject ?pfs115 ;
rdf:predicate up:annotation ;
rdf:object ?annotation116 .
_:830802 a rdf:Statement ;
up:attribution _:830740 ;
rdf:subject ?pfs115 ;
rdf:predicate up:annotation ;
rdf:object ?annotation116 .
_:830803 a rdf:Statement ;
up:source unirule:MF_03127 ;
rdf:subject ?pfs122 ;
rdf:predicate up:annotation ;
rdf:object ?annotation123 .
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up:attribution _:830741 ;
rdf:subject ?pfs122 ;
rdf:predicate up:annotation ;
rdf:object ?annotation123 .
_:830805 a rdf:Statement ;
up:source unirule:MF_03127 ;
rdf:subject ?pfs129 ;
rdf:predicate up:annotation ;
rdf:object ?annotation130 .
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rdf:subject ?pfs129 ;
rdf:predicate up:annotation ;
rdf:object ?annotation130 .
_:830807 a rdf:Statement ;
up:source unirule:MF_03127 ;
rdf:subject ?pfs136 ;
rdf:predicate up:annotation ;
rdf:object ?annotation137 .
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rdf:subject ?pfs136 ;
rdf:predicate up:annotation ;
rdf:object ?annotation137 .
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up:source unirule:MF_03127 ;
rdf:subject ?pfs143 ;
rdf:predicate up:annotation ;
rdf:object ?annotation144 .
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rdf:subject ?pfs143 ;
rdf:predicate up:annotation ;
rdf:object ?annotation144 .
_:830811 a rdf:Statement ;
up:source unirule:MF_03127 ;
rdf:subject ?pfs150 ;
rdf:predicate up:annotation ;
rdf:object ?annotation151 .
_:830812 a rdf:Statement ;
up:attribution _:830745 ;
rdf:subject ?pfs150 ;
rdf:predicate up:annotation ;
rdf:object ?annotation151 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_03127
#Rule MF_03127 Created by:? on:2012-08-21 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_03127 .
?thisOrganism rdfs:subClassOf+ taxon:7742 .
BIND(URI(CONCAT(STR(?this), '#MF_03127a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_03127a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_03127a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_03127a3')) AS ?name3) .
BIND(URI(CONCAT(STR(?this), '#MF_03127a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_03127a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_03127a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_03127a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_03127a10')) AS ?annotation10) .
BIND(URI(CONCAT(STR(?this), '#MF_03127a11')) AS ?annotation11) .
BIND(URI(CONCAT(STR(?this), '#MF_03127a13')) AS ?annotation13) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch161 faldo:location ?templateMotifSequenceMatchRegionP30520162 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP30520164 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP30520MF_03127157 .
?templateMotifSequenceMatchRegionP30520162 faldo:begin ?templateMotifSequenceMatchBeginP30520163 .
?templateMotifSequenceMatchBeginP30520163 faldo:position ?templateMotifSequenceMatchBeginPositionP30520158 ;
faldo:reference isoform:P30520-1 .
?templateMotifSequenceProfileAlignmentOperationP30520164 edam:has_input signature:MF_03127 ;
rdf:type edam:operation_0300 .
?targetMotifMatch165 faldo:location ?targetMotifMatchRegionMatch166 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03127168 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP30520MF_03127159 .
?targetMotifMatchRegionMatch166 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03127167 .
?targetMotifMatchRegionMatchBeginMF_03127167 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03127160 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03127168 edam:has_input signature:MF_03127 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP30520MF_03127157, 1, (STRLEN(?templateMotifCigarP30520MF_03127157) - STRLEN(REPLACE(?templateMotifCigarP30520MF_03127157, CONCAT('^(?:-*[^-]){', STR(((1 - ?templateMotifSequenceMatchBeginPositionP30520158) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1169) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP30520MF_03127159, 1, (STRLEN(?targetMotifMatchCigarP30520MF_03127159) - STRLEN(REPLACE(?targetMotifMatchCigarP30520MF_03127159, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1169), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP30520MF_03127159, 1, (STRLEN(?targetMotifMatchCigarP30520MF_03127159) - STRLEN(REPLACE(?targetMotifMatchCigarP30520MF_03127159, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1169), '}'), '')))), '[^-]', ''))) AS ?step2170) .
BIND(((?step2170 + ?targetMotifMatchRegionMatchBeginPositionMF_03127160) - 1) AS ?thisPositionOn19) .
BIND(?thisPositionOn19 AS ?thisPositionOn20) .
BIND(?this AS ?pfs1t171) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb17) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse18) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn19, 1) = 'M')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP30520MF_03127157, 1, (STRLEN(?templateMotifCigarP30520MF_03127157) - STRLEN(REPLACE(?templateMotifCigarP30520MF_03127157, CONCAT('^(?:-*[^-]){', STR(((2 - ?templateMotifSequenceMatchBeginPositionP30520158) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1172) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP30520MF_03127159, 1, (STRLEN(?targetMotifMatchCigarP30520MF_03127159) - STRLEN(REPLACE(?targetMotifMatchCigarP30520MF_03127159, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1172), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP30520MF_03127159, 1, (STRLEN(?targetMotifMatchCigarP30520MF_03127159) - STRLEN(REPLACE(?targetMotifMatchCigarP30520MF_03127159, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1172), '}'), '')))), '[^-]', ''))) AS ?step2173) .
BIND(((?step2173 + ?targetMotifMatchRegionMatchBeginPositionMF_03127160) - 1) AS ?thisPositionOn24) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn25) .
BIND(?this AS ?pfs1t174) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb22) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse23) .
FILTER ((BOUND(?thisPositionOn24) && BOUND(?thisPositionOn25))) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP30520MF_03127157, 1, (STRLEN(?templateMotifCigarP30520MF_03127157) - STRLEN(REPLACE(?templateMotifCigarP30520MF_03127157, CONCAT('^(?:-*[^-]){', STR(((2 - ?templateMotifSequenceMatchBeginPositionP30520158) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1175) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP30520MF_03127159, 1, (STRLEN(?targetMotifMatchCigarP30520MF_03127159) - STRLEN(REPLACE(?targetMotifMatchCigarP30520MF_03127159, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1175), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP30520MF_03127159, 1, (STRLEN(?targetMotifMatchCigarP30520MF_03127159) - STRLEN(REPLACE(?targetMotifMatchCigarP30520MF_03127159, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1175), '}'), '')))), '[^-]', ''))) AS ?step2176) .
BIND(((?step2176 + ?targetMotifMatchRegionMatchBeginPositionMF_03127160) - 1) AS ?thisPositionOn29) .
BIND(?thisPositionOn29 AS ?thisPositionOn30) .
BIND(?this AS ?pfs1t177) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb27) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse28) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn29, 1) = 'A')) .
BIND(?this AS ?pfs15) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch182 faldo:location ?templateMotifSequenceMatchRegionP30520183 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP30520185 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP30520MF_03127178 .
?templateMotifSequenceMatchRegionP30520183 faldo:begin ?templateMotifSequenceMatchBeginP30520184 .
?templateMotifSequenceMatchBeginP30520184 faldo:position ?templateMotifSequenceMatchBeginPositionP30520179 ;
faldo:reference isoform:P30520-1 .
?templateMotifSequenceProfileAlignmentOperationP30520185 edam:has_input signature:MF_03127 ;
rdf:type edam:operation_0300 .
?targetMotifMatch186 faldo:location ?targetMotifMatchRegionMatch187 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03127189 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP30520MF_03127180 .
?targetMotifMatchRegionMatch187 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03127188 .
?targetMotifMatchRegionMatchBeginMF_03127188 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03127181 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03127189 edam:has_input signature:MF_03127 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP30520MF_03127178, 1, (STRLEN(?templateMotifCigarP30520MF_03127178) - STRLEN(REPLACE(?templateMotifCigarP30520MF_03127178, CONCAT('^(?:-*[^-]){', STR(((39 - ?templateMotifSequenceMatchBeginPositionP30520179) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1190) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP30520MF_03127180, 1, (STRLEN(?targetMotifMatchCigarP30520MF_03127180) - STRLEN(REPLACE(?targetMotifMatchCigarP30520MF_03127180, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1190), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP30520MF_03127180, 1, (STRLEN(?targetMotifMatchCigarP30520MF_03127180) - STRLEN(REPLACE(?targetMotifMatchCigarP30520MF_03127180, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1190), '}'), '')))), '[^-]', ''))) AS ?step2191) .
BIND(((?step2191 + ?targetMotifMatchRegionMatchBeginPositionMF_03127181) - 1) AS ?thisPositionOn36) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP30520MF_03127178, 1, (STRLEN(?templateMotifCigarP30520MF_03127178) - STRLEN(REPLACE(?templateMotifCigarP30520MF_03127178, CONCAT('^(?:-*[^-]){', STR(((45 - ?templateMotifSequenceMatchBeginPositionP30520179) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1192) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP30520MF_03127180, 1, (STRLEN(?targetMotifMatchCigarP30520MF_03127180) - STRLEN(REPLACE(?targetMotifMatchCigarP30520MF_03127180, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1192), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP30520MF_03127180, 1, (STRLEN(?targetMotifMatchCigarP30520MF_03127180) - STRLEN(REPLACE(?targetMotifMatchCigarP30520MF_03127180, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1192), '}'), '')))), '[^-]', ''))) AS ?step2193) .
BIND(((?step2193 + ?targetMotifMatchRegionMatchBeginPositionMF_03127181) - 1) AS ?thisPositionOn37) .
BIND(?this AS ?pfs2t194) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfsb33) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfse34) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn36, (?thisPositionOn37 - ?thisPositionOn36)) = 'GDEGKGK')) .
BIND(URI(CONCAT(STR(?this), '#MF_03127a32')) AS ?annotation32) .
BIND(?this AS ?pfs31) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch199 faldo:location ?templateMotifSequenceMatchRegionP30520200 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP30520202 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP30520MF_03127195 .
?templateMotifSequenceMatchRegionP30520200 faldo:begin ?templateMotifSequenceMatchBeginP30520201 .
?templateMotifSequenceMatchBeginP30520201 faldo:position ?templateMotifSequenceMatchBeginPositionP30520196 ;
faldo:reference isoform:P30520-1 .
?templateMotifSequenceProfileAlignmentOperationP30520202 edam:has_input signature:MF_03127 ;
rdf:type edam:operation_0300 .
?targetMotifMatch203 faldo:location ?targetMotifMatchRegionMatch204 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03127206 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP30520MF_03127197 .
?targetMotifMatchRegionMatch204 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03127205 .
?targetMotifMatchRegionMatchBeginMF_03127205 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03127198 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03127206 edam:has_input signature:MF_03127 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP30520MF_03127195, 1, (STRLEN(?templateMotifCigarP30520MF_03127195) - STRLEN(REPLACE(?templateMotifCigarP30520MF_03127195, CONCAT('^(?:-*[^-]){', STR(((67 - ?templateMotifSequenceMatchBeginPositionP30520196) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1207) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP30520MF_03127197, 1, (STRLEN(?targetMotifMatchCigarP30520MF_03127197) - STRLEN(REPLACE(?targetMotifMatchCigarP30520MF_03127197, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1207), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP30520MF_03127197, 1, (STRLEN(?targetMotifMatchCigarP30520MF_03127197) - STRLEN(REPLACE(?targetMotifMatchCigarP30520MF_03127197, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1207), '}'), '')))), '[^-]', ''))) AS ?step2208) .
BIND(((?step2208 + ?targetMotifMatchRegionMatchBeginPositionMF_03127198) - 1) AS ?thisPositionOn43) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP30520MF_03127195, 1, (STRLEN(?templateMotifCigarP30520MF_03127195) - STRLEN(REPLACE(?templateMotifCigarP30520MF_03127195, CONCAT('^(?:-*[^-]){', STR(((69 - ?templateMotifSequenceMatchBeginPositionP30520196) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1209) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP30520MF_03127197, 1, (STRLEN(?targetMotifMatchCigarP30520MF_03127197) - STRLEN(REPLACE(?targetMotifMatchCigarP30520MF_03127197, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1209), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP30520MF_03127197, 1, (STRLEN(?targetMotifMatchCigarP30520MF_03127197) - STRLEN(REPLACE(?targetMotifMatchCigarP30520MF_03127197, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1209), '}'), '')))), '[^-]', ''))) AS ?step2210) .
BIND(((?step2210 + ?targetMotifMatchRegionMatchBeginPositionMF_03127198) - 1) AS ?thisPositionOn44) .
BIND(?this AS ?pfs2t211) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfsb40) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfse41) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn43, (?thisPositionOn44 - ?thisPositionOn43)) = 'GHT')) .
BIND(URI(CONCAT(STR(?this), '#MF_03127a39')) AS ?annotation39) .
BIND(?this AS ?pfs38) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch216 faldo:location ?templateMotifSequenceMatchRegionP30520217 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP30520219 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP30520MF_03127212 .
?templateMotifSequenceMatchRegionP30520217 faldo:begin ?templateMotifSequenceMatchBeginP30520218 .
?templateMotifSequenceMatchBeginP30520218 faldo:position ?templateMotifSequenceMatchBeginPositionP30520213 ;
faldo:reference isoform:P30520-1 .
?templateMotifSequenceProfileAlignmentOperationP30520219 edam:has_input signature:MF_03127 ;
rdf:type edam:operation_0300 .
?targetMotifMatch220 faldo:location ?targetMotifMatchRegionMatch221 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03127223 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP30520MF_03127214 .
?targetMotifMatchRegionMatch221 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03127222 .
?targetMotifMatchRegionMatchBeginMF_03127222 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03127215 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03127223 edam:has_input signature:MF_03127 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP30520MF_03127212, 1, (STRLEN(?templateMotifCigarP30520MF_03127212) - STRLEN(REPLACE(?templateMotifCigarP30520MF_03127212, CONCAT('^(?:-*[^-]){', STR(((362 - ?templateMotifSequenceMatchBeginPositionP30520213) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1224) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP30520MF_03127214, 1, (STRLEN(?targetMotifMatchCigarP30520MF_03127214) - STRLEN(REPLACE(?targetMotifMatchCigarP30520MF_03127214, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1224), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP30520MF_03127214, 1, (STRLEN(?targetMotifMatchCigarP30520MF_03127214) - STRLEN(REPLACE(?targetMotifMatchCigarP30520MF_03127214, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1224), '}'), '')))), '[^-]', ''))) AS ?step2225) .
BIND(((?step2225 + ?targetMotifMatchRegionMatchBeginPositionMF_03127215) - 1) AS ?thisPositionOn50) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP30520MF_03127212, 1, (STRLEN(?templateMotifCigarP30520MF_03127212) - STRLEN(REPLACE(?templateMotifCigarP30520MF_03127212, CONCAT('^(?:-*[^-]){', STR(((364 - ?templateMotifSequenceMatchBeginPositionP30520213) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1226) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP30520MF_03127214, 1, (STRLEN(?targetMotifMatchCigarP30520MF_03127214) - STRLEN(REPLACE(?targetMotifMatchCigarP30520MF_03127214, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1226), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP30520MF_03127214, 1, (STRLEN(?targetMotifMatchCigarP30520MF_03127214) - STRLEN(REPLACE(?targetMotifMatchCigarP30520MF_03127214, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1226), '}'), '')))), '[^-]', ''))) AS ?step2227) .
BIND(((?step2227 + ?targetMotifMatchRegionMatchBeginPositionMF_03127215) - 1) AS ?thisPositionOn51) .
BIND(?this AS ?pfs2t228) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfsb47) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfse48) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn50, (?thisPositionOn51 - ?thisPositionOn50)) = 'KLD')) .
BIND(URI(CONCAT(STR(?this), '#MF_03127a46')) AS ?annotation46) .
BIND(?this AS ?pfs45) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch233 faldo:location ?templateMotifSequenceMatchRegionP30520234 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP30520236 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP30520MF_03127229 .
?templateMotifSequenceMatchRegionP30520234 faldo:begin ?templateMotifSequenceMatchBeginP30520235 .
?templateMotifSequenceMatchBeginP30520235 faldo:position ?templateMotifSequenceMatchBeginPositionP30520230 ;
faldo:reference isoform:P30520-1 .
?templateMotifSequenceProfileAlignmentOperationP30520236 edam:has_input signature:MF_03127 ;
rdf:type edam:operation_0300 .
?targetMotifMatch237 faldo:location ?targetMotifMatchRegionMatch238 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03127240 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP30520MF_03127231 .
?targetMotifMatchRegionMatch238 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03127239 .
?targetMotifMatchRegionMatchBeginMF_03127239 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03127232 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03127240 edam:has_input signature:MF_03127 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP30520MF_03127229, 1, (STRLEN(?templateMotifCigarP30520MF_03127229) - STRLEN(REPLACE(?templateMotifCigarP30520MF_03127229, CONCAT('^(?:-*[^-]){', STR(((444 - ?templateMotifSequenceMatchBeginPositionP30520230) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1241) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP30520MF_03127231, 1, (STRLEN(?targetMotifMatchCigarP30520MF_03127231) - STRLEN(REPLACE(?targetMotifMatchCigarP30520MF_03127231, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1241), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP30520MF_03127231, 1, (STRLEN(?targetMotifMatchCigarP30520MF_03127231) - STRLEN(REPLACE(?targetMotifMatchCigarP30520MF_03127231, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1241), '}'), '')))), '[^-]', ''))) AS ?step2242) .
BIND(((?step2242 + ?targetMotifMatchRegionMatchBeginPositionMF_03127232) - 1) AS ?thisPositionOn57) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP30520MF_03127229, 1, (STRLEN(?templateMotifCigarP30520MF_03127229) - STRLEN(REPLACE(?templateMotifCigarP30520MF_03127229, CONCAT('^(?:-*[^-]){', STR(((447 - ?templateMotifSequenceMatchBeginPositionP30520230) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1243) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP30520MF_03127231, 1, (STRLEN(?targetMotifMatchCigarP30520MF_03127231) - STRLEN(REPLACE(?targetMotifMatchCigarP30520MF_03127231, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1243), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP30520MF_03127231, 1, (STRLEN(?targetMotifMatchCigarP30520MF_03127231) - STRLEN(REPLACE(?targetMotifMatchCigarP30520MF_03127231, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1243), '}'), '')))), '[^-]', ''))) AS ?step2244) .
BIND(((?step2244 + ?targetMotifMatchRegionMatchBeginPositionMF_03127232) - 1) AS ?thisPositionOn58) .
BIND(?this AS ?pfs2t245) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfsb54) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfse55) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn57, (?thisPositionOn58 - ?thisPositionOn57)) = 'GVGK')) .
BIND(URI(CONCAT(STR(?this), '#MF_03127a53')) AS ?annotation53) .
BIND(?this AS ?pfs52) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch250 faldo:location ?templateMotifSequenceMatchRegionP30520251 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP30520253 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP30520MF_03127246 .
?templateMotifSequenceMatchRegionP30520251 faldo:begin ?templateMotifSequenceMatchBeginP30520252 .
?templateMotifSequenceMatchBeginP30520252 faldo:position ?templateMotifSequenceMatchBeginPositionP30520247 ;
faldo:reference isoform:P30520-1 .
?templateMotifSequenceProfileAlignmentOperationP30520253 edam:has_input signature:MF_03127 ;
rdf:type edam:operation_0300 .
?targetMotifMatch254 faldo:location ?targetMotifMatchRegionMatch255 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03127257 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP30520MF_03127248 .
?targetMotifMatchRegionMatch255 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03127256 .
?targetMotifMatchRegionMatchBeginMF_03127256 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03127249 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03127257 edam:has_input signature:MF_03127 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP30520MF_03127246, 1, (STRLEN(?templateMotifCigarP30520MF_03127246) - STRLEN(REPLACE(?templateMotifCigarP30520MF_03127246, CONCAT('^(?:-*[^-]){', STR(((40 - ?templateMotifSequenceMatchBeginPositionP30520247) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1258) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP30520MF_03127248, 1, (STRLEN(?targetMotifMatchCigarP30520MF_03127248) - STRLEN(REPLACE(?targetMotifMatchCigarP30520MF_03127248, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1258), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP30520MF_03127248, 1, (STRLEN(?targetMotifMatchCigarP30520MF_03127248) - STRLEN(REPLACE(?targetMotifMatchCigarP30520MF_03127248, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1258), '}'), '')))), '[^-]', ''))) AS ?step2259) .
BIND(((?step2259 + ?targetMotifMatchRegionMatchBeginPositionMF_03127249) - 1) AS ?thisPositionOn64) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP30520MF_03127246, 1, (STRLEN(?templateMotifCigarP30520MF_03127246) - STRLEN(REPLACE(?templateMotifCigarP30520MF_03127246, CONCAT('^(?:-*[^-]){', STR(((43 - ?templateMotifSequenceMatchBeginPositionP30520247) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1260) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP30520MF_03127248, 1, (STRLEN(?targetMotifMatchCigarP30520MF_03127248) - STRLEN(REPLACE(?targetMotifMatchCigarP30520MF_03127248, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1260), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP30520MF_03127248, 1, (STRLEN(?targetMotifMatchCigarP30520MF_03127248) - STRLEN(REPLACE(?targetMotifMatchCigarP30520MF_03127248, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1260), '}'), '')))), '[^-]', ''))) AS ?step2261) .
BIND(((?step2261 + ?targetMotifMatchRegionMatchBeginPositionMF_03127249) - 1) AS ?thisPositionOn65) .
BIND(?this AS ?pfs2t262) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfsb61) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn65))) AS ?pfse62) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn64, (?thisPositionOn65 - ?thisPositionOn64)) = 'DEGK')) .
BIND(URI(CONCAT(STR(?this), '#MF_03127a60')) AS ?annotation60) .
BIND(?this AS ?pfs59) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch267 faldo:location ?templateMotifSequenceMatchRegionP30520268 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP30520270 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP30520MF_03127263 .
?templateMotifSequenceMatchRegionP30520268 faldo:begin ?templateMotifSequenceMatchBeginP30520269 .
?templateMotifSequenceMatchBeginP30520269 faldo:position ?templateMotifSequenceMatchBeginPositionP30520264 ;
faldo:reference isoform:P30520-1 .
?templateMotifSequenceProfileAlignmentOperationP30520270 edam:has_input signature:MF_03127 ;
rdf:type edam:operation_0300 .
?targetMotifMatch271 faldo:location ?targetMotifMatchRegionMatch272 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03127274 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP30520MF_03127265 .
?targetMotifMatchRegionMatch272 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03127273 .
?targetMotifMatchRegionMatchBeginMF_03127273 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03127266 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03127274 edam:has_input signature:MF_03127 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP30520MF_03127263, 1, (STRLEN(?templateMotifCigarP30520MF_03127263) - STRLEN(REPLACE(?templateMotifCigarP30520MF_03127263, CONCAT('^(?:-*[^-]){', STR(((65 - ?templateMotifSequenceMatchBeginPositionP30520264) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1275) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP30520MF_03127265, 1, (STRLEN(?targetMotifMatchCigarP30520MF_03127265) - STRLEN(REPLACE(?targetMotifMatchCigarP30520MF_03127265, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1275), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP30520MF_03127265, 1, (STRLEN(?targetMotifMatchCigarP30520MF_03127265) - STRLEN(REPLACE(?targetMotifMatchCigarP30520MF_03127265, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1275), '}'), '')))), '[^-]', ''))) AS ?step2276) .
BIND(((?step2276 + ?targetMotifMatchRegionMatchBeginPositionMF_03127266) - 1) AS ?thisPositionOn71) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP30520MF_03127263, 1, (STRLEN(?templateMotifCigarP30520MF_03127263) - STRLEN(REPLACE(?templateMotifCigarP30520MF_03127263, CONCAT('^(?:-*[^-]){', STR(((68 - ?templateMotifSequenceMatchBeginPositionP30520264) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1277) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP30520MF_03127265, 1, (STRLEN(?targetMotifMatchCigarP30520MF_03127265) - STRLEN(REPLACE(?targetMotifMatchCigarP30520MF_03127265, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1277), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP30520MF_03127265, 1, (STRLEN(?targetMotifMatchCigarP30520MF_03127265) - STRLEN(REPLACE(?targetMotifMatchCigarP30520MF_03127265, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1277), '}'), '')))), '[^-]', ''))) AS ?step2278) .
BIND(((?step2278 + ?targetMotifMatchRegionMatchBeginPositionMF_03127266) - 1) AS ?thisPositionOn72) .
BIND(?this AS ?pfs2t279) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn71))) AS ?pfsb68) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn72))) AS ?pfse69) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn71, (?thisPositionOn72 - ?thisPositionOn71)) = 'NAGH')) .
BIND(URI(CONCAT(STR(?this), '#MF_03127a67')) AS ?annotation67) .
BIND(?this AS ?pfs66) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch284 faldo:location ?templateMotifSequenceMatchRegionP30520285 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP30520287 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP30520MF_03127280 .
?templateMotifSequenceMatchRegionP30520285 faldo:begin ?templateMotifSequenceMatchBeginP30520286 .
?templateMotifSequenceMatchBeginP30520286 faldo:position ?templateMotifSequenceMatchBeginPositionP30520281 ;
faldo:reference isoform:P30520-1 .
?templateMotifSequenceProfileAlignmentOperationP30520287 edam:has_input signature:MF_03127 ;
rdf:type edam:operation_0300 .
?targetMotifMatch288 faldo:location ?targetMotifMatchRegionMatch289 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03127291 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP30520MF_03127282 .
?targetMotifMatchRegionMatch289 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03127290 .
?targetMotifMatchRegionMatchBeginMF_03127290 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03127283 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03127291 edam:has_input signature:MF_03127 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP30520MF_03127280, 1, (STRLEN(?templateMotifCigarP30520MF_03127280) - STRLEN(REPLACE(?templateMotifCigarP30520MF_03127280, CONCAT('^(?:-*[^-]){', STR(((330 - ?templateMotifSequenceMatchBeginPositionP30520281) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1292) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP30520MF_03127282, 1, (STRLEN(?targetMotifMatchCigarP30520MF_03127282) - STRLEN(REPLACE(?targetMotifMatchCigarP30520MF_03127282, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1292), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP30520MF_03127282, 1, (STRLEN(?targetMotifMatchCigarP30520MF_03127282) - STRLEN(REPLACE(?targetMotifMatchCigarP30520MF_03127282, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1292), '}'), '')))), '[^-]', ''))) AS ?step2293) .
BIND(((?step2293 + ?targetMotifMatchRegionMatchBeginPositionMF_03127283) - 1) AS ?thisPositionOn79) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP30520MF_03127280, 1, (STRLEN(?templateMotifCigarP30520MF_03127280) - STRLEN(REPLACE(?templateMotifCigarP30520MF_03127280, CONCAT('^(?:-*[^-]){', STR(((336 - ?templateMotifSequenceMatchBeginPositionP30520281) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1294) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP30520MF_03127282, 1, (STRLEN(?targetMotifMatchCigarP30520MF_03127282) - STRLEN(REPLACE(?targetMotifMatchCigarP30520MF_03127282, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1294), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP30520MF_03127282, 1, (STRLEN(?targetMotifMatchCigarP30520MF_03127282) - STRLEN(REPLACE(?targetMotifMatchCigarP30520MF_03127282, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1294), '}'), '')))), '[^-]', ''))) AS ?step2295) .
BIND(((?step2295 + ?targetMotifMatchRegionMatchBeginPositionMF_03127283) - 1) AS ?thisPositionOn80) .
BIND(?this AS ?pfs2t296) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn79))) AS ?pfsb75) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn80))) AS ?pfse76) .
FILTER (REGEX('[ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX]T[ARNDCQEGHILKMFPSTWYVBZJUOX][KR][ARNDCQEGHILKMFPSTWYVBZJUOX]R', SUBSTR(?thisSequenceValue, ?thisPositionOn79, (?thisPositionOn80 - ?thisPositionOn79)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03127a74')) AS ?annotation74) .
BIND(?this AS ?pfs73) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch301 faldo:location ?templateMotifSequenceMatchRegionP30520302 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP30520304 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP30520MF_03127297 .
?templateMotifSequenceMatchRegionP30520302 faldo:begin ?templateMotifSequenceMatchBeginP30520303 .
?templateMotifSequenceMatchBeginP30520303 faldo:position ?templateMotifSequenceMatchBeginPositionP30520298 ;
faldo:reference isoform:P30520-1 .
?templateMotifSequenceProfileAlignmentOperationP30520304 edam:has_input signature:MF_03127 ;
rdf:type edam:operation_0300 .
?targetMotifMatch305 faldo:location ?targetMotifMatchRegionMatch306 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03127308 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP30520MF_03127299 .
?targetMotifMatchRegionMatch306 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03127307 .
?targetMotifMatchRegionMatchBeginMF_03127307 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03127300 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03127308 edam:has_input signature:MF_03127 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP30520MF_03127297, 1, (STRLEN(?templateMotifCigarP30520MF_03127297) - STRLEN(REPLACE(?templateMotifCigarP30520MF_03127297, CONCAT('^(?:-*[^-]){', STR(((40 - ?templateMotifSequenceMatchBeginPositionP30520298) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1309) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP30520MF_03127299, 1, (STRLEN(?targetMotifMatchCigarP30520MF_03127299) - STRLEN(REPLACE(?targetMotifMatchCigarP30520MF_03127299, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1309), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP30520MF_03127299, 1, (STRLEN(?targetMotifMatchCigarP30520MF_03127299) - STRLEN(REPLACE(?targetMotifMatchCigarP30520MF_03127299, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1309), '}'), '')))), '[^-]', ''))) AS ?step2310) .
BIND(((?step2310 + ?targetMotifMatchRegionMatchBeginPositionMF_03127300) - 1) AS ?thisPositionOn85) .
BIND(?thisPositionOn85 AS ?thisPositionOn86) .
BIND(?this AS ?pfs2t311) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn85))) AS ?pfsb83) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn86))) AS ?pfse84) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn85, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_03127a82')) AS ?annotation82) .
BIND(?this AS ?pfs81) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch316 faldo:location ?templateMotifSequenceMatchRegionP30520317 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP30520319 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP30520MF_03127312 .
?templateMotifSequenceMatchRegionP30520317 faldo:begin ?templateMotifSequenceMatchBeginP30520318 .
?templateMotifSequenceMatchBeginP30520318 faldo:position ?templateMotifSequenceMatchBeginPositionP30520313 ;
faldo:reference isoform:P30520-1 .
?templateMotifSequenceProfileAlignmentOperationP30520319 edam:has_input signature:MF_03127 ;
rdf:type edam:operation_0300 .
?targetMotifMatch320 faldo:location ?targetMotifMatchRegionMatch321 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03127323 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP30520MF_03127314 .
?targetMotifMatchRegionMatch321 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03127322 .
?targetMotifMatchRegionMatchBeginMF_03127322 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03127315 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03127323 edam:has_input signature:MF_03127 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP30520MF_03127312, 1, (STRLEN(?templateMotifCigarP30520MF_03127312) - STRLEN(REPLACE(?templateMotifCigarP30520MF_03127312, CONCAT('^(?:-*[^-]){', STR(((68 - ?templateMotifSequenceMatchBeginPositionP30520313) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1324) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP30520MF_03127314, 1, (STRLEN(?targetMotifMatchCigarP30520MF_03127314) - STRLEN(REPLACE(?targetMotifMatchCigarP30520MF_03127314, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1324), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP30520MF_03127314, 1, (STRLEN(?targetMotifMatchCigarP30520MF_03127314) - STRLEN(REPLACE(?targetMotifMatchCigarP30520MF_03127314, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1324), '}'), '')))), '[^-]', ''))) AS ?step2325) .
BIND(((?step2325 + ?targetMotifMatchRegionMatchBeginPositionMF_03127315) - 1) AS ?thisPositionOn91) .
BIND(?thisPositionOn91 AS ?thisPositionOn92) .
BIND(?this AS ?pfs2t326) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn91))) AS ?pfsb89) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn92))) AS ?pfse90) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn91, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_03127a88')) AS ?annotation88) .
BIND(?this AS ?pfs87) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch331 faldo:location ?templateMotifSequenceMatchRegionP30520332 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP30520334 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP30520MF_03127327 .
?templateMotifSequenceMatchRegionP30520332 faldo:begin ?templateMotifSequenceMatchBeginP30520333 .
?templateMotifSequenceMatchBeginP30520333 faldo:position ?templateMotifSequenceMatchBeginPositionP30520328 ;
faldo:reference isoform:P30520-1 .
?templateMotifSequenceProfileAlignmentOperationP30520334 edam:has_input signature:MF_03127 ;
rdf:type edam:operation_0300 .
?targetMotifMatch335 faldo:location ?targetMotifMatchRegionMatch336 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03127338 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP30520MF_03127329 .
?targetMotifMatchRegionMatch336 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03127337 .
?targetMotifMatchRegionMatchBeginMF_03127337 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03127330 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03127338 edam:has_input signature:MF_03127 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP30520MF_03127327, 1, (STRLEN(?templateMotifCigarP30520MF_03127327) - STRLEN(REPLACE(?templateMotifCigarP30520MF_03127327, CONCAT('^(?:-*[^-]){', STR(((40 - ?templateMotifSequenceMatchBeginPositionP30520328) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1339) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP30520MF_03127329, 1, (STRLEN(?targetMotifMatchCigarP30520MF_03127329) - STRLEN(REPLACE(?targetMotifMatchCigarP30520MF_03127329, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1339), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP30520MF_03127329, 1, (STRLEN(?targetMotifMatchCigarP30520MF_03127329) - STRLEN(REPLACE(?targetMotifMatchCigarP30520MF_03127329, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1339), '}'), '')))), '[^-]', ''))) AS ?step2340) .
BIND(((?step2340 + ?targetMotifMatchRegionMatchBeginPositionMF_03127330) - 1) AS ?thisPositionOn98) .
BIND(?thisPositionOn98 AS ?thisPositionOn99) .
BIND(?this AS ?pfs2t341) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn98))) AS ?pfsb95) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn99))) AS ?pfse96) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn98, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_03127a94')) AS ?annotation94) .
BIND(?this AS ?pfs93) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch346 faldo:location ?templateMotifSequenceMatchRegionP30520347 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP30520349 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP30520MF_03127342 .
?templateMotifSequenceMatchRegionP30520347 faldo:begin ?templateMotifSequenceMatchBeginP30520348 .
?templateMotifSequenceMatchBeginP30520348 faldo:position ?templateMotifSequenceMatchBeginPositionP30520343 ;
faldo:reference isoform:P30520-1 .
?templateMotifSequenceProfileAlignmentOperationP30520349 edam:has_input signature:MF_03127 ;
rdf:type edam:operation_0300 .
?targetMotifMatch350 faldo:location ?targetMotifMatchRegionMatch351 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03127353 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP30520MF_03127344 .
?targetMotifMatchRegionMatch351 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03127352 .
?targetMotifMatchRegionMatchBeginMF_03127352 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03127345 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03127353 edam:has_input signature:MF_03127 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP30520MF_03127342, 1, (STRLEN(?templateMotifCigarP30520MF_03127342) - STRLEN(REPLACE(?templateMotifCigarP30520MF_03127342, CONCAT('^(?:-*[^-]){', STR(((67 - ?templateMotifSequenceMatchBeginPositionP30520343) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1354) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP30520MF_03127344, 1, (STRLEN(?targetMotifMatchCigarP30520MF_03127344) - STRLEN(REPLACE(?targetMotifMatchCigarP30520MF_03127344, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1354), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP30520MF_03127344, 1, (STRLEN(?targetMotifMatchCigarP30520MF_03127344) - STRLEN(REPLACE(?targetMotifMatchCigarP30520MF_03127344, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1354), '}'), '')))), '[^-]', ''))) AS ?step2355) .
BIND(((?step2355 + ?targetMotifMatchRegionMatchBeginPositionMF_03127345) - 1) AS ?thisPositionOn105) .
BIND(?thisPositionOn105 AS ?thisPositionOn106) .
BIND(?this AS ?pfs2t356) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn105))) AS ?pfsb102) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn106))) AS ?pfse103) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn105, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_03127a101')) AS ?annotation101) .
BIND(?this AS ?pfs100) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch361 faldo:location ?templateMotifSequenceMatchRegionP30520362 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP30520364 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP30520MF_03127357 .
?templateMotifSequenceMatchRegionP30520362 faldo:begin ?templateMotifSequenceMatchBeginP30520363 .
?templateMotifSequenceMatchBeginP30520363 faldo:position ?templateMotifSequenceMatchBeginPositionP30520358 ;
faldo:reference isoform:P30520-1 .
?templateMotifSequenceProfileAlignmentOperationP30520364 edam:has_input signature:MF_03127 ;
rdf:type edam:operation_0300 .
?targetMotifMatch365 faldo:location ?targetMotifMatchRegionMatch366 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03127368 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP30520MF_03127359 .
?targetMotifMatchRegionMatch366 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03127367 .
?targetMotifMatchRegionMatchBeginMF_03127367 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03127360 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03127368 edam:has_input signature:MF_03127 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP30520MF_03127357, 1, (STRLEN(?templateMotifCigarP30520MF_03127357) - STRLEN(REPLACE(?templateMotifCigarP30520MF_03127357, CONCAT('^(?:-*[^-]){', STR(((40 - ?templateMotifSequenceMatchBeginPositionP30520358) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1369) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP30520MF_03127359, 1, (STRLEN(?targetMotifMatchCigarP30520MF_03127359) - STRLEN(REPLACE(?targetMotifMatchCigarP30520MF_03127359, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1369), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP30520MF_03127359, 1, (STRLEN(?targetMotifMatchCigarP30520MF_03127359) - STRLEN(REPLACE(?targetMotifMatchCigarP30520MF_03127359, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1369), '}'), '')))), '[^-]', ''))) AS ?step2370) .
BIND(((?step2370 + ?targetMotifMatchRegionMatchBeginPositionMF_03127360) - 1) AS ?thisPositionOn113) .
BIND(?thisPositionOn113 AS ?thisPositionOn114) .
BIND(?this AS ?pfs2t371) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn113))) AS ?pfsb109) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn114))) AS ?pfse110) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn113, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_03127a108')) AS ?annotation108) .
BIND(?this AS ?pfs107) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch376 faldo:location ?templateMotifSequenceMatchRegionP30520377 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP30520379 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP30520MF_03127372 .
?templateMotifSequenceMatchRegionP30520377 faldo:begin ?templateMotifSequenceMatchBeginP30520378 .
?templateMotifSequenceMatchBeginP30520378 faldo:position ?templateMotifSequenceMatchBeginPositionP30520373 ;
faldo:reference isoform:P30520-1 .
?templateMotifSequenceProfileAlignmentOperationP30520379 edam:has_input signature:MF_03127 ;
rdf:type edam:operation_0300 .
?targetMotifMatch380 faldo:location ?targetMotifMatchRegionMatch381 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03127383 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP30520MF_03127374 .
?targetMotifMatchRegionMatch381 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03127382 .
?targetMotifMatchRegionMatchBeginMF_03127382 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03127375 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03127383 edam:has_input signature:MF_03127 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP30520MF_03127372, 1, (STRLEN(?templateMotifCigarP30520MF_03127372) - STRLEN(REPLACE(?templateMotifCigarP30520MF_03127372, CONCAT('^(?:-*[^-]){', STR(((162 - ?templateMotifSequenceMatchBeginPositionP30520373) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1384) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP30520MF_03127374, 1, (STRLEN(?targetMotifMatchCigarP30520MF_03127374) - STRLEN(REPLACE(?targetMotifMatchCigarP30520MF_03127374, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1384), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP30520MF_03127374, 1, (STRLEN(?targetMotifMatchCigarP30520MF_03127374) - STRLEN(REPLACE(?targetMotifMatchCigarP30520MF_03127374, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1384), '}'), '')))), '[^-]', ''))) AS ?step2385) .
BIND(((?step2385 + ?targetMotifMatchRegionMatchBeginPositionMF_03127375) - 1) AS ?thisPositionOn120) .
BIND(?thisPositionOn120 AS ?thisPositionOn121) .
BIND(?this AS ?pfs2t386) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn120))) AS ?pfsb117) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn121))) AS ?pfse118) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn120, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_03127a116')) AS ?annotation116) .
BIND(?this AS ?pfs115) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch391 faldo:location ?templateMotifSequenceMatchRegionP30520392 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP30520394 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP30520MF_03127387 .
?templateMotifSequenceMatchRegionP30520392 faldo:begin ?templateMotifSequenceMatchBeginP30520393 .
?templateMotifSequenceMatchBeginP30520393 faldo:position ?templateMotifSequenceMatchBeginPositionP30520388 ;
faldo:reference isoform:P30520-1 .
?templateMotifSequenceProfileAlignmentOperationP30520394 edam:has_input signature:MF_03127 ;
rdf:type edam:operation_0300 .
?targetMotifMatch395 faldo:location ?targetMotifMatchRegionMatch396 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03127398 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP30520MF_03127389 .
?targetMotifMatchRegionMatch396 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03127397 .
?targetMotifMatchRegionMatchBeginMF_03127397 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03127390 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03127398 edam:has_input signature:MF_03127 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP30520MF_03127387, 1, (STRLEN(?templateMotifCigarP30520MF_03127387) - STRLEN(REPLACE(?templateMotifCigarP30520MF_03127387, CONCAT('^(?:-*[^-]){', STR(((176 - ?templateMotifSequenceMatchBeginPositionP30520388) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1399) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP30520MF_03127389, 1, (STRLEN(?targetMotifMatchCigarP30520MF_03127389) - STRLEN(REPLACE(?targetMotifMatchCigarP30520MF_03127389, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1399), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP30520MF_03127389, 1, (STRLEN(?targetMotifMatchCigarP30520MF_03127389) - STRLEN(REPLACE(?targetMotifMatchCigarP30520MF_03127389, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1399), '}'), '')))), '[^-]', ''))) AS ?step2400) .
BIND(((?step2400 + ?targetMotifMatchRegionMatchBeginPositionMF_03127390) - 1) AS ?thisPositionOn127) .
BIND(?thisPositionOn127 AS ?thisPositionOn128) .
BIND(?this AS ?pfs2t401) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn127))) AS ?pfsb124) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn128))) AS ?pfse125) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn127, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_03127a123')) AS ?annotation123) .
BIND(?this AS ?pfs122) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch406 faldo:location ?templateMotifSequenceMatchRegionP30520407 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP30520409 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP30520MF_03127402 .
?templateMotifSequenceMatchRegionP30520407 faldo:begin ?templateMotifSequenceMatchBeginP30520408 .
?templateMotifSequenceMatchBeginP30520408 faldo:position ?templateMotifSequenceMatchBeginPositionP30520403 ;
faldo:reference isoform:P30520-1 .
?templateMotifSequenceProfileAlignmentOperationP30520409 edam:has_input signature:MF_03127 ;
rdf:type edam:operation_0300 .
?targetMotifMatch410 faldo:location ?targetMotifMatchRegionMatch411 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03127413 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP30520MF_03127404 .
?targetMotifMatchRegionMatch411 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03127412 .
?targetMotifMatchRegionMatchBeginMF_03127412 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03127405 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03127413 edam:has_input signature:MF_03127 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP30520MF_03127402, 1, (STRLEN(?templateMotifCigarP30520MF_03127402) - STRLEN(REPLACE(?templateMotifCigarP30520MF_03127402, CONCAT('^(?:-*[^-]){', STR(((255 - ?templateMotifSequenceMatchBeginPositionP30520403) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1414) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP30520MF_03127404, 1, (STRLEN(?targetMotifMatchCigarP30520MF_03127404) - STRLEN(REPLACE(?targetMotifMatchCigarP30520MF_03127404, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1414), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP30520MF_03127404, 1, (STRLEN(?targetMotifMatchCigarP30520MF_03127404) - STRLEN(REPLACE(?targetMotifMatchCigarP30520MF_03127404, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1414), '}'), '')))), '[^-]', ''))) AS ?step2415) .
BIND(((?step2415 + ?targetMotifMatchRegionMatchBeginPositionMF_03127405) - 1) AS ?thisPositionOn134) .
BIND(?thisPositionOn134 AS ?thisPositionOn135) .
BIND(?this AS ?pfs2t416) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn134))) AS ?pfsb131) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn135))) AS ?pfse132) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn134, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_03127a130')) AS ?annotation130) .
BIND(?this AS ?pfs129) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch421 faldo:location ?templateMotifSequenceMatchRegionP30520422 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP30520424 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP30520MF_03127417 .
?templateMotifSequenceMatchRegionP30520422 faldo:begin ?templateMotifSequenceMatchBeginP30520423 .
?templateMotifSequenceMatchBeginP30520423 faldo:position ?templateMotifSequenceMatchBeginPositionP30520418 ;
faldo:reference isoform:P30520-1 .
?templateMotifSequenceProfileAlignmentOperationP30520424 edam:has_input signature:MF_03127 ;
rdf:type edam:operation_0300 .
?targetMotifMatch425 faldo:location ?targetMotifMatchRegionMatch426 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03127428 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP30520MF_03127419 .
?targetMotifMatchRegionMatch426 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03127427 .
?targetMotifMatchRegionMatchBeginMF_03127427 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03127420 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03127428 edam:has_input signature:MF_03127 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP30520MF_03127417, 1, (STRLEN(?templateMotifCigarP30520MF_03127417) - STRLEN(REPLACE(?templateMotifCigarP30520MF_03127417, CONCAT('^(?:-*[^-]){', STR(((270 - ?templateMotifSequenceMatchBeginPositionP30520418) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1429) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP30520MF_03127419, 1, (STRLEN(?targetMotifMatchCigarP30520MF_03127419) - STRLEN(REPLACE(?targetMotifMatchCigarP30520MF_03127419, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1429), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP30520MF_03127419, 1, (STRLEN(?targetMotifMatchCigarP30520MF_03127419) - STRLEN(REPLACE(?targetMotifMatchCigarP30520MF_03127419, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1429), '}'), '')))), '[^-]', ''))) AS ?step2430) .
BIND(((?step2430 + ?targetMotifMatchRegionMatchBeginPositionMF_03127420) - 1) AS ?thisPositionOn141) .
BIND(?thisPositionOn141 AS ?thisPositionOn142) .
BIND(?this AS ?pfs2t431) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn141))) AS ?pfsb138) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn142))) AS ?pfse139) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn141, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_03127a137')) AS ?annotation137) .
BIND(?this AS ?pfs136) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch436 faldo:location ?templateMotifSequenceMatchRegionP30520437 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP30520439 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP30520MF_03127432 .
?templateMotifSequenceMatchRegionP30520437 faldo:begin ?templateMotifSequenceMatchBeginP30520438 .
?templateMotifSequenceMatchBeginP30520438 faldo:position ?templateMotifSequenceMatchBeginPositionP30520433 ;
faldo:reference isoform:P30520-1 .
?templateMotifSequenceProfileAlignmentOperationP30520439 edam:has_input signature:MF_03127 ;
rdf:type edam:operation_0300 .
?targetMotifMatch440 faldo:location ?targetMotifMatchRegionMatch441 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03127443 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP30520MF_03127434 .
?targetMotifMatchRegionMatch441 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03127442 .
?targetMotifMatchRegionMatchBeginMF_03127442 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03127435 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03127443 edam:has_input signature:MF_03127 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP30520MF_03127432, 1, (STRLEN(?templateMotifCigarP30520MF_03127432) - STRLEN(REPLACE(?templateMotifCigarP30520MF_03127432, CONCAT('^(?:-*[^-]){', STR(((334 - ?templateMotifSequenceMatchBeginPositionP30520433) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1444) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP30520MF_03127434, 1, (STRLEN(?targetMotifMatchCigarP30520MF_03127434) - STRLEN(REPLACE(?targetMotifMatchCigarP30520MF_03127434, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1444), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP30520MF_03127434, 1, (STRLEN(?targetMotifMatchCigarP30520MF_03127434) - STRLEN(REPLACE(?targetMotifMatchCigarP30520MF_03127434, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1444), '}'), '')))), '[^-]', ''))) AS ?step2445) .
BIND(((?step2445 + ?targetMotifMatchRegionMatchBeginPositionMF_03127435) - 1) AS ?thisPositionOn148) .
BIND(?thisPositionOn148 AS ?thisPositionOn149) .
BIND(?this AS ?pfs2t446) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn148))) AS ?pfsb145) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn149))) AS ?pfse146) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn148, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_03127a144')) AS ?annotation144) .
BIND(?this AS ?pfs143) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch451 faldo:location ?templateMotifSequenceMatchRegionP30520452 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP30520454 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP30520MF_03127447 .
?templateMotifSequenceMatchRegionP30520452 faldo:begin ?templateMotifSequenceMatchBeginP30520453 .
?templateMotifSequenceMatchBeginP30520453 faldo:position ?templateMotifSequenceMatchBeginPositionP30520448 ;
faldo:reference isoform:P30520-1 .
?templateMotifSequenceProfileAlignmentOperationP30520454 edam:has_input signature:MF_03127 ;
rdf:type edam:operation_0300 .
?targetMotifMatch455 faldo:location ?targetMotifMatchRegionMatch456 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03127458 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP30520MF_03127449 .
?targetMotifMatchRegionMatch456 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03127457 .
?targetMotifMatchRegionMatchBeginMF_03127457 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03127450 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03127458 edam:has_input signature:MF_03127 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP30520MF_03127447, 1, (STRLEN(?templateMotifCigarP30520MF_03127447) - STRLEN(REPLACE(?templateMotifCigarP30520MF_03127447, CONCAT('^(?:-*[^-]){', STR(((336 - ?templateMotifSequenceMatchBeginPositionP30520448) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1459) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP30520MF_03127449, 1, (STRLEN(?targetMotifMatchCigarP30520MF_03127449) - STRLEN(REPLACE(?targetMotifMatchCigarP30520MF_03127449, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1459), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP30520MF_03127449, 1, (STRLEN(?targetMotifMatchCigarP30520MF_03127449) - STRLEN(REPLACE(?targetMotifMatchCigarP30520MF_03127449, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1459), '}'), '')))), '[^-]', ''))) AS ?step2460) .
BIND(((?step2460 + ?targetMotifMatchRegionMatchBeginPositionMF_03127450) - 1) AS ?thisPositionOn155) .
BIND(?thisPositionOn155 AS ?thisPositionOn156) .
BIND(?this AS ?pfs2t461) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn155))) AS ?pfsb152) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn156))) AS ?pfse153) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn155, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_03127a151')) AS ?annotation151) .
BIND(?this AS ?pfs150) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag462) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag462, ?UNBOUND_VARIABLE) AS ?case14) .
}
"xsd:string |
