| http://purl.uniprot.org/unirules/MF_03184#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:867900 up:source unirule:MF_03184 .
_:867901 up:source unirule:MF_03184 .
_:867902 up:source unirule:MF_03184 .
_:867903 up:source unirule:MF_03184 .
_:867904 up:source unirule:MF_03184 .
_:867905 up:source unirule:MF_03184 .
_:867906 up:source unirule:MF_03184 .
_:867907 up:source unirule:MF_03184 .
_:867908 up:source unirule:MF_03184 .
_:867909 up:source unirule:MF_03184 .
_:867910 up:source unirule:MF_03184 .
_:867911 up:source unirule:MF_03184 .
_:867912 up:source unirule:MF_03184 .
_:867913 up:source unirule:MF_03184 .
_:867914 up:source unirule:MF_03184 .
_:867915 up:source unirule:MF_03184 .
_:867916 up:source unirule:MF_03184 .
_:867917 up:source unirule:MF_03184 .
_:867918 up:source unirule:MF_03184 .
_:867919 up:source unirule:MF_03184 .
_:867920 up:source unirule:MF_03184 .
_:867921 up:source unirule:MF_03184 .
_:867922 up:source unirule:MF_03184 .
_:867923 up:source unirule:MF_03184 .
_:867924 up:source unirule:MF_03184 .
_:867925 up:source unirule:MF_03184 .
_:867926 up:source unirule:MF_03184 .
_:867927 up:source unirule:MF_03184 .
_:867928 up:source unirule:MF_03184 .
_:867929 up:source unirule:MF_03184 .
_:867930 up:source unirule:MF_03184 .
_:867931 up:source unirule:MF_03184 .
_:867932 up:source unirule:MF_03184 .
_:867933 up:source unirule:MF_03184 .
_:867934 up:source unirule:MF_03184 .
_:867935 up:source unirule:MF_03184 .
_:867936 up:source unirule:MF_03184 .
_:867937 up:source unirule:MF_03184 .
_:867938 up:source unirule:MF_03184 .
_:867939 up:source unirule:MF_03184 .
_:867940 up:source unirule:MF_03184 .
_:867941 up:source unirule:MF_03184 .
_:867942 up:source unirule:MF_03184 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation6 ,
?annotation7 ,
?annotation8 ,
?annotation10 ;
up:classifiedWith GO:0003872 ,
GO:0005737 ,
GO:0006096 ,
keyword:21 ,
keyword:324 ,
keyword:418 ,
keyword:460 ,
keyword:479 ,
keyword:547 ,
keyword:67 ,
keyword:808 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.7.1.11' ;
up:fullName 'ATP-dependent 6-phosphofructokinase' ;
up:shortName 'ATP-PFK' ,
'Phosphofructokinase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Phosphohexokinase' ;
rdf:type up:Structured_Name .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis.' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 up:cofactor chebi:18420 ;
rdf:type up:Cofactor_Annotation .
?annotation6 a up:Activity_Regulation_Annotation ;
rdfs:comment 'Allosterically activated by ADP, AMP, or fructose 2,6-bisphosphate, and allosterically inhibited by ATP or citrate.' .
?annotation7 a up:Pathway_Annotation ;
rdfs:comment 'Carbohydrate degradation; glycolysis; D-glyceraldehyde 3-phosphate and glycerone phosphate from D-glucose: step 3/4.' .
?annotation8 a up:Subcellular_Location_Annotation .
?annotation8li9 up:cellularComponent .
?annotation10 a up:Similarity_Annotation ;
rdfs:comment "Belongs to the phosphofructokinase type A (PFKA) family. ATP-dependent PFK group I subfamily. Eukaryotic two domain clade 'E' sub-subfamily." .
?pfs14 up:annotation ?annotation15 .
?annotation15 faldo:begin ?pfsb16 ;
faldo:end ?pfse17 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'N-terminal catalytic PFK domain 1' .
?pfsb16 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfse17 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfs20 up:annotation ?annotation21 .
?annotation21 faldo:begin ?pfsb22 ;
faldo:end ?pfse23 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Interdomain linker' .
?pfsb22 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfse23 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?pfs26 up:annotation ?annotation27 .
?annotation27 faldo:begin ?pfsb28 ;
faldo:end ?pfse29 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'C-terminal regulatory PFK domain 2' .
?pfsb28 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?pfse29 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?pfs32 up:annotation ?annotation33 .
?annotation33 faldo:begin ?pfsb34 ;
faldo:end ?pfse35 ;
up:ligand ?ligand36 ;
rdf:type up:Binding_Site_Annotation .
?pfsb34 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?pfse35 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?ligand36 rdfs:subClassOf chebi:30616 .
?pfs39 up:annotation ?annotation40 .
?annotation40 faldo:begin ?pfsb41 ;
faldo:end ?pfse42 ;
up:ligand ?ligand43 ;
rdf:type up:Binding_Site_Annotation .
?pfsb41 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?pfse42 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?ligand43 rdfs:subClassOf chebi:30616 .
?pfs46 up:annotation ?annotation47 .
?annotation47 faldo:begin ?pfsb48 ;
faldo:end ?pfse49 ;
up:ligand ?ligand50 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in other chain' .
?pfsb48 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?pfse49 faldo:position ?thisPositionOn53 ;
rdf:type faldo:ExactPosition .
?ligand50 rdfs:subClassOf ?molecule51 .
?molecule51 rdfs:label 'substrate' .
?pfs54 up:annotation ?annotation55 .
?annotation55 faldo:begin ?pfsb56 ;
faldo:end ?pfse57 ;
up:ligand ?ligand58 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in other chain' .
?pfsb56 faldo:position ?thisPositionOn60 ;
rdf:type faldo:ExactPosition .
?pfse57 faldo:position ?thisPositionOn61 ;
rdf:type faldo:ExactPosition .
?ligand58 rdfs:subClassOf ?molecule59 .
?molecule59 rdfs:label 'substrate' .
?pfs62 up:annotation ?annotation63 .
?annotation63 faldo:begin ?pfsb64 ;
faldo:end ?pfse65 ;
up:ligand ?ligand66 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in other chain' .
?pfsb64 faldo:position ?thisPositionOn68 ;
rdf:type faldo:ExactPosition .
?pfse65 faldo:position ?thisPositionOn69 ;
rdf:type faldo:ExactPosition .
?ligand66 rdfs:subClassOf ?molecule67 .
?molecule67 rdfs:label 'substrate' .
?pfs70 up:annotation ?annotation71 .
?annotation71 faldo:begin ?pfsb72 ;
faldo:end ?pfse73 ;
up:ligand ?ligand74 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in other chain' .
?pfsb72 faldo:position ?thisPositionOn75 ;
rdf:type faldo:ExactPosition .
?pfse73 faldo:position ?thisPositionOn76 ;
rdf:type faldo:ExactPosition .
?ligand74 rdfs:subClassOf chebi:58579 .
?pfs77 up:annotation ?annotation78 .
?annotation78 faldo:begin ?pfsb79 ;
faldo:end ?pfse80 ;
up:ligand ?ligand81 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in other chain' .
?pfsb79 faldo:position ?thisPositionOn82 ;
rdf:type faldo:ExactPosition .
?pfse80 faldo:position ?thisPositionOn83 ;
rdf:type faldo:ExactPosition .
?ligand81 rdfs:subClassOf chebi:58579 .
?pfs84 up:annotation ?annotation85 .
?annotation85 faldo:begin ?pfsb86 ;
faldo:end ?pfse87 ;
up:ligand ?ligand88 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in other chain' .
?pfsb86 faldo:position ?thisPositionOn89 ;
rdf:type faldo:ExactPosition .
?pfse87 faldo:position ?thisPositionOn90 ;
rdf:type faldo:ExactPosition .
?ligand88 rdfs:subClassOf chebi:58579 .
?pfs91 up:annotation ?annotation92 .
?annotation92 faldo:begin ?pfsb93 ;
faldo:end ?pfse94 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb93 faldo:position ?thisPositionOn95 ;
rdf:type faldo:ExactPosition .
?pfse94 faldo:position ?thisPositionOn96 ;
rdf:type faldo:ExactPosition .
?pfs97 up:annotation ?annotation98 .
?annotation98 faldo:begin ?pfsb99 ;
faldo:end ?pfse100 ;
up:ligand ?ligand101 ;
rdf:type up:Binding_Site_Annotation .
?pfsb99 faldo:position ?thisPositionOn102 ;
rdf:type faldo:ExactPosition .
?pfse100 faldo:position ?thisPositionOn103 ;
rdf:type faldo:ExactPosition .
?ligand101 rdfs:subClassOf chebi:18420 .
?pfs104 up:annotation ?annotation105 .
?annotation105 faldo:begin ?pfsb106 ;
faldo:end ?pfse107 ;
up:ligand ?ligand108 ;
rdf:type up:Binding_Site_Annotation .
?pfsb106 faldo:position ?thisPositionOn109 ;
rdf:type faldo:ExactPosition .
?pfse107 faldo:position ?thisPositionOn110 ;
rdf:type faldo:ExactPosition .
?ligand108 rdfs:subClassOf chebi:30616 .
?pfs111 up:annotation ?annotation112 .
?annotation112 faldo:begin ?pfsb113 ;
faldo:end ?pfse114 ;
up:ligand ?ligand115 ;
rdf:type up:Binding_Site_Annotation .
?pfsb113 faldo:position ?thisPositionOn117 ;
rdf:type faldo:ExactPosition .
?pfse114 faldo:position ?thisPositionOn118 ;
rdf:type faldo:ExactPosition .
?ligand115 rdfs:subClassOf ?molecule116 .
?molecule116 rdfs:label 'substrate' .
?pfs119 up:annotation ?annotation120 .
?annotation120 faldo:begin ?pfsb121 ;
faldo:end ?pfse122 ;
up:ligand ?ligand123 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in other chain' .
?pfsb121 faldo:position ?thisPositionOn125 ;
rdf:type faldo:ExactPosition .
?pfse122 faldo:position ?thisPositionOn126 ;
rdf:type faldo:ExactPosition .
?ligand123 rdfs:subClassOf ?molecule124 .
?molecule124 rdfs:label 'substrate' .
?pfs127 up:annotation ?annotation128 .
?annotation128 faldo:begin ?pfsb129 ;
faldo:end ?pfse130 ;
up:ligand ?ligand131 ;
rdf:type up:Binding_Site_Annotation .
?pfsb129 faldo:position ?thisPositionOn133 ;
rdf:type faldo:ExactPosition .
?pfse130 faldo:position ?thisPositionOn134 ;
rdf:type faldo:ExactPosition .
?ligand131 rdfs:subClassOf ?molecule132 .
?molecule132 rdfs:label 'substrate' .
?pfs135 up:annotation ?annotation136 .
?annotation136 faldo:begin ?pfsb137 ;
faldo:end ?pfse138 ;
up:ligand ?ligand139 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in other chain' .
?pfsb137 faldo:position ?thisPositionOn140 ;
rdf:type faldo:ExactPosition .
?pfse138 faldo:position ?thisPositionOn141 ;
rdf:type faldo:ExactPosition .
?ligand139 rdfs:subClassOf chebi:58579 .
?pfs142 up:annotation ?annotation143 .
?annotation143 faldo:begin ?pfsb144 ;
faldo:end ?pfse145 ;
up:ligand ?ligand146 ;
rdf:type up:Binding_Site_Annotation .
?pfsb144 faldo:position ?thisPositionOn147 ;
rdf:type faldo:ExactPosition .
?pfse145 faldo:position ?thisPositionOn148 ;
rdf:type faldo:ExactPosition .
?ligand146 rdfs:subClassOf chebi:58579 .
?pfs149 up:annotation ?annotation150 .
?annotation150 faldo:begin ?pfsb151 ;
faldo:end ?pfse152 ;
up:ligand ?ligand153 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in other chain' .
?pfsb151 faldo:position ?thisPositionOn154 ;
rdf:type faldo:ExactPosition .
?pfse152 faldo:position ?thisPositionOn155 ;
rdf:type faldo:ExactPosition .
?ligand153 rdfs:subClassOf chebi:58579 .
?pfs156 up:annotation ?annotation157 .
?annotation157 faldo:begin ?pfsb158 ;
faldo:end ?pfse159 ;
up:ligand ?ligand160 ;
rdf:type up:Binding_Site_Annotation .
?pfsb158 faldo:position ?thisPositionOn161 ;
rdf:type faldo:ExactPosition .
?pfse159 faldo:position ?thisPositionOn162 ;
rdf:type faldo:ExactPosition .
?ligand160 rdfs:subClassOf chebi:58579 .
?pfs163 up:annotation ?annotation164 .
?annotation164 faldo:begin ?pfsb165 ;
faldo:end ?pfse166 ;
up:ligand ?ligand167 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in other chain' .
?pfsb165 faldo:position ?thisPositionOn168 ;
rdf:type faldo:ExactPosition .
?pfse166 faldo:position ?thisPositionOn169 ;
rdf:type faldo:ExactPosition .
?ligand167 rdfs:subClassOf chebi:58579 .
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up:attribution _:867900 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
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rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
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rdf:subject ?this ;
rdf:predicate up:annotation ;
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rdf:subject ?this ;
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rdf:subject ?this ;
rdf:predicate up:annotation ;
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rdf:subject ?this ;
rdf:predicate up:annotation ;
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rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:21 .
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rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
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rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:418 .
_:867955 a rdf:Statement ;
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rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
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rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
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rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
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rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
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rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
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rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
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up:attribution _:867918 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003872 .
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rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006096 .
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rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
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rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
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rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
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rdf:predicate up:annotation ;
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rdf:predicate up:annotation ;
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rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
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rdf:predicate up:annotation ;
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rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
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up:source unirule:MF_03184 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
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rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
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rdf:predicate up:annotation ;
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rdf:predicate up:annotation ;
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rdf:predicate up:annotation ;
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rdf:predicate up:annotation ;
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up:source unirule:MF_03184 ;
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up:source unirule:MF_03184 ;
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rdf:predicate up:annotation ;
rdf:object ?annotation157 .
_:868006 a rdf:Statement ;
up:source unirule:MF_03184 ;
rdf:subject ?pfs163 ;
rdf:predicate up:annotation ;
rdf:object ?annotation164 .
_:868007 a rdf:Statement ;
up:attribution _:867942 ;
rdf:subject ?pfs163 ;
rdf:predicate up:annotation ;
rdf:object ?annotation164 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_03184
#Rule MF_03184 Created by:? on:2014-05-16 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_03184 .
?thisOrganism rdfs:subClassOf+ taxon:2759 .
BIND(URI(CONCAT(STR(?this), '#MF_03184a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_03184a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_03184a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_03184a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_03184a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_03184a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_03184a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_03184a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_03184a10')) AS ?annotation10) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch174 faldo:location ?templateMotifSequenceMatchRegionP16861175 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP16861177 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP16861MF_03184170 .
?templateMotifSequenceMatchRegionP16861175 faldo:begin ?templateMotifSequenceMatchBeginP16861176 .
?templateMotifSequenceMatchBeginP16861176 faldo:position ?templateMotifSequenceMatchBeginPositionP16861171 ;
faldo:reference isoform:P16861-1 .
?templateMotifSequenceProfileAlignmentOperationP16861177 edam:has_input signature:MF_03184 ;
rdf:type edam:operation_0300 .
?targetMotifMatch178 faldo:location ?targetMotifMatchRegionMatch179 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03184181 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP16861MF_03184172 .
?targetMotifMatchRegionMatch179 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03184180 .
?targetMotifMatchRegionMatchBeginMF_03184180 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03184173 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03184181 edam:has_input signature:MF_03184 ;
rdf:type edam:operation_0300 .
BIND(1 AS ?thisPositionOn18) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP16861MF_03184170, 1, (STRLEN(?templateMotifCigarP16861MF_03184170) - STRLEN(REPLACE(?templateMotifCigarP16861MF_03184170, CONCAT('^(?:-*[^-]){', STR(((580 - ?templateMotifSequenceMatchBeginPositionP16861171) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1182) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP16861MF_03184172, 1, (STRLEN(?targetMotifMatchCigarP16861MF_03184172) - STRLEN(REPLACE(?targetMotifMatchCigarP16861MF_03184172, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1182), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP16861MF_03184172, 1, (STRLEN(?targetMotifMatchCigarP16861MF_03184172) - STRLEN(REPLACE(?targetMotifMatchCigarP16861MF_03184172, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1182), '}'), '')))), '[^-]', ''))) AS ?step2183) .
BIND(((?step2183 + ?targetMotifMatchRegionMatchBeginPositionMF_03184173) - 1) AS ?thisPositionOn19) .
BIND(?this AS ?pfs1t184) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb16) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse17) .
FILTER ((BOUND(?thisPositionOn18) && BOUND(?thisPositionOn19))) .
BIND(URI(CONCAT(STR(?this), '#MF_03184a15')) AS ?annotation15) .
BIND(?this AS ?pfs14) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch189 faldo:location ?templateMotifSequenceMatchRegionP16861190 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP16861192 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP16861MF_03184185 .
?templateMotifSequenceMatchRegionP16861190 faldo:begin ?templateMotifSequenceMatchBeginP16861191 .
?templateMotifSequenceMatchBeginP16861191 faldo:position ?templateMotifSequenceMatchBeginPositionP16861186 ;
faldo:reference isoform:P16861-1 .
?templateMotifSequenceProfileAlignmentOperationP16861192 edam:has_input signature:MF_03184 ;
rdf:type edam:operation_0300 .
?targetMotifMatch193 faldo:location ?targetMotifMatchRegionMatch194 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03184196 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP16861MF_03184187 .
?targetMotifMatchRegionMatch194 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03184195 .
?targetMotifMatchRegionMatchBeginMF_03184195 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03184188 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03184196 edam:has_input signature:MF_03184 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP16861MF_03184185, 1, (STRLEN(?templateMotifCigarP16861MF_03184185) - STRLEN(REPLACE(?templateMotifCigarP16861MF_03184185, CONCAT('^(?:-*[^-]){', STR(((581 - ?templateMotifSequenceMatchBeginPositionP16861186) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1197) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP16861MF_03184187, 1, (STRLEN(?targetMotifMatchCigarP16861MF_03184187) - STRLEN(REPLACE(?targetMotifMatchCigarP16861MF_03184187, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1197), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP16861MF_03184187, 1, (STRLEN(?targetMotifMatchCigarP16861MF_03184187) - STRLEN(REPLACE(?targetMotifMatchCigarP16861MF_03184187, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1197), '}'), '')))), '[^-]', ''))) AS ?step2198) .
BIND(((?step2198 + ?targetMotifMatchRegionMatchBeginPositionMF_03184188) - 1) AS ?thisPositionOn24) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP16861MF_03184185, 1, (STRLEN(?templateMotifCigarP16861MF_03184185) - STRLEN(REPLACE(?templateMotifCigarP16861MF_03184185, CONCAT('^(?:-*[^-]){', STR(((594 - ?templateMotifSequenceMatchBeginPositionP16861186) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1199) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP16861MF_03184187, 1, (STRLEN(?targetMotifMatchCigarP16861MF_03184187) - STRLEN(REPLACE(?targetMotifMatchCigarP16861MF_03184187, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1199), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP16861MF_03184187, 1, (STRLEN(?targetMotifMatchCigarP16861MF_03184187) - STRLEN(REPLACE(?targetMotifMatchCigarP16861MF_03184187, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1199), '}'), '')))), '[^-]', ''))) AS ?step2200) .
BIND(((?step2200 + ?targetMotifMatchRegionMatchBeginPositionMF_03184188) - 1) AS ?thisPositionOn25) .
BIND(?this AS ?pfs1t201) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb22) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse23) .
FILTER ((BOUND(?thisPositionOn24) && BOUND(?thisPositionOn25))) .
BIND(URI(CONCAT(STR(?this), '#MF_03184a21')) AS ?annotation21) .
BIND(?this AS ?pfs20) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch206 faldo:location ?templateMotifSequenceMatchRegionP16861207 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP16861209 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP16861MF_03184202 .
?templateMotifSequenceMatchRegionP16861207 faldo:begin ?templateMotifSequenceMatchBeginP16861208 .
?templateMotifSequenceMatchBeginP16861208 faldo:position ?templateMotifSequenceMatchBeginPositionP16861203 ;
faldo:reference isoform:P16861-1 .
?templateMotifSequenceProfileAlignmentOperationP16861209 edam:has_input signature:MF_03184 ;
rdf:type edam:operation_0300 .
?targetMotifMatch210 faldo:location ?targetMotifMatchRegionMatch211 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03184213 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP16861MF_03184204 .
?targetMotifMatchRegionMatch211 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03184212 .
?targetMotifMatchRegionMatchBeginMF_03184212 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03184205 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03184213 edam:has_input signature:MF_03184 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP16861MF_03184202, 1, (STRLEN(?templateMotifCigarP16861MF_03184202) - STRLEN(REPLACE(?templateMotifCigarP16861MF_03184202, CONCAT('^(?:-*[^-]){', STR(((595 - ?templateMotifSequenceMatchBeginPositionP16861203) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1214) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP16861MF_03184204, 1, (STRLEN(?targetMotifMatchCigarP16861MF_03184204) - STRLEN(REPLACE(?targetMotifMatchCigarP16861MF_03184204, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1214), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP16861MF_03184204, 1, (STRLEN(?targetMotifMatchCigarP16861MF_03184204) - STRLEN(REPLACE(?targetMotifMatchCigarP16861MF_03184204, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1214), '}'), '')))), '[^-]', ''))) AS ?step2215) .
BIND(((?step2215 + ?targetMotifMatchRegionMatchBeginPositionMF_03184205) - 1) AS ?thisPositionOn30) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn31) .
BIND(?this AS ?pfs1t216) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb28) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse29) .
FILTER ((BOUND(?thisPositionOn30) && BOUND(?thisPositionOn31))) .
BIND(URI(CONCAT(STR(?this), '#MF_03184a27')) AS ?annotation27) .
BIND(?this AS ?pfs26) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch221 faldo:location ?templateMotifSequenceMatchRegionP16861222 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP16861224 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP16861MF_03184217 .
?templateMotifSequenceMatchRegionP16861222 faldo:begin ?templateMotifSequenceMatchBeginP16861223 .
?templateMotifSequenceMatchBeginP16861223 faldo:position ?templateMotifSequenceMatchBeginPositionP16861218 ;
faldo:reference isoform:P16861-1 .
?templateMotifSequenceProfileAlignmentOperationP16861224 edam:has_input signature:MF_03184 ;
rdf:type edam:operation_0300 .
?targetMotifMatch225 faldo:location ?targetMotifMatchRegionMatch226 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03184228 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP16861MF_03184219 .
?targetMotifMatchRegionMatch226 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03184227 .
?targetMotifMatchRegionMatchBeginMF_03184227 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03184220 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03184228 edam:has_input signature:MF_03184 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP16861MF_03184217, 1, (STRLEN(?templateMotifCigarP16861MF_03184217) - STRLEN(REPLACE(?templateMotifCigarP16861MF_03184217, CONCAT('^(?:-*[^-]){', STR(((278 - ?templateMotifSequenceMatchBeginPositionP16861218) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1229) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP16861MF_03184219, 1, (STRLEN(?targetMotifMatchCigarP16861MF_03184219) - STRLEN(REPLACE(?targetMotifMatchCigarP16861MF_03184219, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1229), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP16861MF_03184219, 1, (STRLEN(?targetMotifMatchCigarP16861MF_03184219) - STRLEN(REPLACE(?targetMotifMatchCigarP16861MF_03184219, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1229), '}'), '')))), '[^-]', ''))) AS ?step2230) .
BIND(((?step2230 + ?targetMotifMatchRegionMatchBeginPositionMF_03184220) - 1) AS ?thisPositionOn37) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP16861MF_03184217, 1, (STRLEN(?templateMotifCigarP16861MF_03184217) - STRLEN(REPLACE(?templateMotifCigarP16861MF_03184217, CONCAT('^(?:-*[^-]){', STR(((279 - ?templateMotifSequenceMatchBeginPositionP16861218) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1231) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP16861MF_03184219, 1, (STRLEN(?targetMotifMatchCigarP16861MF_03184219) - STRLEN(REPLACE(?targetMotifMatchCigarP16861MF_03184219, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1231), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP16861MF_03184219, 1, (STRLEN(?targetMotifMatchCigarP16861MF_03184219) - STRLEN(REPLACE(?targetMotifMatchCigarP16861MF_03184219, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1231), '}'), '')))), '[^-]', ''))) AS ?step2232) .
BIND(((?step2232 + ?targetMotifMatchRegionMatchBeginPositionMF_03184220) - 1) AS ?thisPositionOn38) .
BIND(?this AS ?pfs1t233) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfsb34) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfse35) .
FILTER (REGEX('R[ARNDCQEGHILKMFPSTWYVBZJUOX]', SUBSTR(?thisSequenceValue, ?thisPositionOn37, (?thisPositionOn38 - ?thisPositionOn37)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03184a33')) AS ?annotation33) .
BIND(?this AS ?pfs32) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch238 faldo:location ?templateMotifSequenceMatchRegionP16861239 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP16861241 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP16861MF_03184234 .
?templateMotifSequenceMatchRegionP16861239 faldo:begin ?templateMotifSequenceMatchBeginP16861240 .
?templateMotifSequenceMatchBeginP16861240 faldo:position ?templateMotifSequenceMatchBeginPositionP16861235 ;
faldo:reference isoform:P16861-1 .
?templateMotifSequenceProfileAlignmentOperationP16861241 edam:has_input signature:MF_03184 ;
rdf:type edam:operation_0300 .
?targetMotifMatch242 faldo:location ?targetMotifMatchRegionMatch243 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03184245 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP16861MF_03184236 .
?targetMotifMatchRegionMatch243 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03184244 .
?targetMotifMatchRegionMatchBeginMF_03184244 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03184237 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03184245 edam:has_input signature:MF_03184 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP16861MF_03184234, 1, (STRLEN(?templateMotifCigarP16861MF_03184234) - STRLEN(REPLACE(?templateMotifCigarP16861MF_03184234, CONCAT('^(?:-*[^-]){', STR(((308 - ?templateMotifSequenceMatchBeginPositionP16861235) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1246) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP16861MF_03184236, 1, (STRLEN(?targetMotifMatchCigarP16861MF_03184236) - STRLEN(REPLACE(?targetMotifMatchCigarP16861MF_03184236, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1246), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP16861MF_03184236, 1, (STRLEN(?targetMotifMatchCigarP16861MF_03184236) - STRLEN(REPLACE(?targetMotifMatchCigarP16861MF_03184236, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1246), '}'), '')))), '[^-]', ''))) AS ?step2247) .
BIND(((?step2247 + ?targetMotifMatchRegionMatchBeginPositionMF_03184237) - 1) AS ?thisPositionOn44) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP16861MF_03184234, 1, (STRLEN(?templateMotifCigarP16861MF_03184234) - STRLEN(REPLACE(?templateMotifCigarP16861MF_03184234, CONCAT('^(?:-*[^-]){', STR(((311 - ?templateMotifSequenceMatchBeginPositionP16861235) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1248) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP16861MF_03184236, 1, (STRLEN(?targetMotifMatchCigarP16861MF_03184236) - STRLEN(REPLACE(?targetMotifMatchCigarP16861MF_03184236, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1248), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP16861MF_03184236, 1, (STRLEN(?targetMotifMatchCigarP16861MF_03184236) - STRLEN(REPLACE(?targetMotifMatchCigarP16861MF_03184236, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1248), '}'), '')))), '[^-]', ''))) AS ?step2249) .
BIND(((?step2249 + ?targetMotifMatchRegionMatchBeginPositionMF_03184237) - 1) AS ?thisPositionOn45) .
BIND(?this AS ?pfs1t250) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfsb41) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfse42) .
FILTER (REGEX('G[DE]G[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn44, (?thisPositionOn45 - ?thisPositionOn44)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03184a40')) AS ?annotation40) .
BIND(?this AS ?pfs39) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch255 faldo:location ?templateMotifSequenceMatchRegionP16861256 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP16861258 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP16861MF_03184251 .
?templateMotifSequenceMatchRegionP16861256 faldo:begin ?templateMotifSequenceMatchBeginP16861257 .
?templateMotifSequenceMatchBeginP16861257 faldo:position ?templateMotifSequenceMatchBeginPositionP16861252 ;
faldo:reference isoform:P16861-1 .
?templateMotifSequenceProfileAlignmentOperationP16861258 edam:has_input signature:MF_03184 ;
rdf:type edam:operation_0300 .
?targetMotifMatch259 faldo:location ?targetMotifMatchRegionMatch260 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03184262 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP16861MF_03184253 .
?targetMotifMatchRegionMatch260 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03184261 .
?targetMotifMatchRegionMatchBeginMF_03184261 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03184254 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03184262 edam:has_input signature:MF_03184 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP16861MF_03184251, 1, (STRLEN(?templateMotifCigarP16861MF_03184251) - STRLEN(REPLACE(?templateMotifCigarP16861MF_03184251, CONCAT('^(?:-*[^-]){', STR(((354 - ?templateMotifSequenceMatchBeginPositionP16861252) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1263) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP16861MF_03184253, 1, (STRLEN(?targetMotifMatchCigarP16861MF_03184253) - STRLEN(REPLACE(?targetMotifMatchCigarP16861MF_03184253, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1263), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP16861MF_03184253, 1, (STRLEN(?targetMotifMatchCigarP16861MF_03184253) - STRLEN(REPLACE(?targetMotifMatchCigarP16861MF_03184253, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1263), '}'), '')))), '[^-]', ''))) AS ?step2264) .
BIND(((?step2264 + ?targetMotifMatchRegionMatchBeginPositionMF_03184254) - 1) AS ?thisPositionOn52) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP16861MF_03184251, 1, (STRLEN(?templateMotifCigarP16861MF_03184251) - STRLEN(REPLACE(?templateMotifCigarP16861MF_03184251, CONCAT('^(?:-*[^-]){', STR(((356 - ?templateMotifSequenceMatchBeginPositionP16861252) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1265) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP16861MF_03184253, 1, (STRLEN(?targetMotifMatchCigarP16861MF_03184253) - STRLEN(REPLACE(?targetMotifMatchCigarP16861MF_03184253, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1265), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP16861MF_03184253, 1, (STRLEN(?targetMotifMatchCigarP16861MF_03184253) - STRLEN(REPLACE(?targetMotifMatchCigarP16861MF_03184253, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1265), '}'), '')))), '[^-]', ''))) AS ?step2266) .
BIND(((?step2266 + ?targetMotifMatchRegionMatchBeginPositionMF_03184254) - 1) AS ?thisPositionOn53) .
BIND(?this AS ?pfs1t267) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfsb48) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfse49) .
FILTER (REGEX('S[ARNDCQEGHILKMFPSTWYVBZJUOX]D', SUBSTR(?thisSequenceValue, ?thisPositionOn52, (?thisPositionOn53 - ?thisPositionOn52)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03184a47')) AS ?annotation47) .
BIND(?this AS ?pfs46) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch272 faldo:location ?templateMotifSequenceMatchRegionP16861273 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP16861275 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP16861MF_03184268 .
?templateMotifSequenceMatchRegionP16861273 faldo:begin ?templateMotifSequenceMatchBeginP16861274 .
?templateMotifSequenceMatchBeginP16861274 faldo:position ?templateMotifSequenceMatchBeginPositionP16861269 ;
faldo:reference isoform:P16861-1 .
?templateMotifSequenceProfileAlignmentOperationP16861275 edam:has_input signature:MF_03184 ;
rdf:type edam:operation_0300 .
?targetMotifMatch276 faldo:location ?targetMotifMatchRegionMatch277 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03184279 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP16861MF_03184270 .
?targetMotifMatchRegionMatch277 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03184278 .
?targetMotifMatchRegionMatchBeginMF_03184278 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03184271 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03184279 edam:has_input signature:MF_03184 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP16861MF_03184268, 1, (STRLEN(?templateMotifCigarP16861MF_03184268) - STRLEN(REPLACE(?templateMotifCigarP16861MF_03184268, CONCAT('^(?:-*[^-]){', STR(((398 - ?templateMotifSequenceMatchBeginPositionP16861269) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1280) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP16861MF_03184270, 1, (STRLEN(?targetMotifMatchCigarP16861MF_03184270) - STRLEN(REPLACE(?targetMotifMatchCigarP16861MF_03184270, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1280), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP16861MF_03184270, 1, (STRLEN(?targetMotifMatchCigarP16861MF_03184270) - STRLEN(REPLACE(?targetMotifMatchCigarP16861MF_03184270, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1280), '}'), '')))), '[^-]', ''))) AS ?step2281) .
BIND(((?step2281 + ?targetMotifMatchRegionMatchBeginPositionMF_03184271) - 1) AS ?thisPositionOn60) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP16861MF_03184268, 1, (STRLEN(?templateMotifCigarP16861MF_03184268) - STRLEN(REPLACE(?templateMotifCigarP16861MF_03184268, CONCAT('^(?:-*[^-]){', STR(((400 - ?templateMotifSequenceMatchBeginPositionP16861269) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1282) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP16861MF_03184270, 1, (STRLEN(?targetMotifMatchCigarP16861MF_03184270) - STRLEN(REPLACE(?targetMotifMatchCigarP16861MF_03184270, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1282), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP16861MF_03184270, 1, (STRLEN(?targetMotifMatchCigarP16861MF_03184270) - STRLEN(REPLACE(?targetMotifMatchCigarP16861MF_03184270, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1282), '}'), '')))), '[^-]', ''))) AS ?step2283) .
BIND(((?step2283 + ?targetMotifMatchRegionMatchBeginPositionMF_03184271) - 1) AS ?thisPositionOn61) .
BIND(?this AS ?pfs1t284) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfsb56) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfse57) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn60, (?thisPositionOn61 - ?thisPositionOn60)) = 'MGR')) .
BIND(URI(CONCAT(STR(?this), '#MF_03184a55')) AS ?annotation55) .
BIND(?this AS ?pfs54) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch289 faldo:location ?templateMotifSequenceMatchRegionP16861290 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP16861292 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP16861MF_03184285 .
?templateMotifSequenceMatchRegionP16861290 faldo:begin ?templateMotifSequenceMatchBeginP16861291 .
?templateMotifSequenceMatchBeginP16861291 faldo:position ?templateMotifSequenceMatchBeginPositionP16861286 ;
faldo:reference isoform:P16861-1 .
?templateMotifSequenceProfileAlignmentOperationP16861292 edam:has_input signature:MF_03184 ;
rdf:type edam:operation_0300 .
?targetMotifMatch293 faldo:location ?targetMotifMatchRegionMatch294 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03184296 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP16861MF_03184287 .
?targetMotifMatchRegionMatch294 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03184295 .
?targetMotifMatchRegionMatchBeginMF_03184295 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03184288 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03184296 edam:has_input signature:MF_03184 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP16861MF_03184285, 1, (STRLEN(?templateMotifCigarP16861MF_03184285) - STRLEN(REPLACE(?templateMotifCigarP16861MF_03184285, CONCAT('^(?:-*[^-]){', STR(((488 - ?templateMotifSequenceMatchBeginPositionP16861286) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1297) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP16861MF_03184287, 1, (STRLEN(?targetMotifMatchCigarP16861MF_03184287) - STRLEN(REPLACE(?targetMotifMatchCigarP16861MF_03184287, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1297), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP16861MF_03184287, 1, (STRLEN(?targetMotifMatchCigarP16861MF_03184287) - STRLEN(REPLACE(?targetMotifMatchCigarP16861MF_03184287, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1297), '}'), '')))), '[^-]', ''))) AS ?step2298) .
BIND(((?step2298 + ?targetMotifMatchRegionMatchBeginPositionMF_03184288) - 1) AS ?thisPositionOn68) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP16861MF_03184285, 1, (STRLEN(?templateMotifCigarP16861MF_03184285) - STRLEN(REPLACE(?templateMotifCigarP16861MF_03184285, CONCAT('^(?:-*[^-]){', STR(((491 - ?templateMotifSequenceMatchBeginPositionP16861286) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1299) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP16861MF_03184287, 1, (STRLEN(?targetMotifMatchCigarP16861MF_03184287) - STRLEN(REPLACE(?targetMotifMatchCigarP16861MF_03184287, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1299), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP16861MF_03184287, 1, (STRLEN(?targetMotifMatchCigarP16861MF_03184287) - STRLEN(REPLACE(?targetMotifMatchCigarP16861MF_03184287, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1299), '}'), '')))), '[^-]', ''))) AS ?step2300) .
BIND(((?step2300 + ?targetMotifMatchRegionMatchBeginPositionMF_03184288) - 1) AS ?thisPositionOn69) .
BIND(?this AS ?pfs1t301) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn68))) AS ?pfsb64) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn69))) AS ?pfse65) .
FILTER (REGEX('H[ARNDCQEGHILKMFPSTWYVBZJUOX]{2)R', SUBSTR(?thisSequenceValue, ?thisPositionOn68, (?thisPositionOn69 - ?thisPositionOn68)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03184a63')) AS ?annotation63) .
BIND(?this AS ?pfs62) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch306 faldo:location ?templateMotifSequenceMatchRegionP16861307 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP16861309 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP16861MF_03184302 .
?templateMotifSequenceMatchRegionP16861307 faldo:begin ?templateMotifSequenceMatchBeginP16861308 .
?templateMotifSequenceMatchBeginP16861308 faldo:position ?templateMotifSequenceMatchBeginPositionP16861303 ;
faldo:reference isoform:P16861-1 .
?templateMotifSequenceProfileAlignmentOperationP16861309 edam:has_input signature:MF_03184 ;
rdf:type edam:operation_0300 .
?targetMotifMatch310 faldo:location ?targetMotifMatchRegionMatch311 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03184313 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP16861MF_03184304 .
?targetMotifMatchRegionMatch311 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03184312 .
?targetMotifMatchRegionMatchBeginMF_03184312 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03184305 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03184313 edam:has_input signature:MF_03184 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP16861MF_03184302, 1, (STRLEN(?templateMotifCigarP16861MF_03184302) - STRLEN(REPLACE(?templateMotifCigarP16861MF_03184302, CONCAT('^(?:-*[^-]){', STR(((722 - ?templateMotifSequenceMatchBeginPositionP16861303) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1314) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP16861MF_03184304, 1, (STRLEN(?targetMotifMatchCigarP16861MF_03184304) - STRLEN(REPLACE(?targetMotifMatchCigarP16861MF_03184304, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1314), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP16861MF_03184304, 1, (STRLEN(?targetMotifMatchCigarP16861MF_03184304) - STRLEN(REPLACE(?targetMotifMatchCigarP16861MF_03184304, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1314), '}'), '')))), '[^-]', ''))) AS ?step2315) .
BIND(((?step2315 + ?targetMotifMatchRegionMatchBeginPositionMF_03184305) - 1) AS ?thisPositionOn75) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP16861MF_03184302, 1, (STRLEN(?templateMotifCigarP16861MF_03184302) - STRLEN(REPLACE(?templateMotifCigarP16861MF_03184302, CONCAT('^(?:-*[^-]){', STR(((726 - ?templateMotifSequenceMatchBeginPositionP16861303) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1316) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP16861MF_03184304, 1, (STRLEN(?targetMotifMatchCigarP16861MF_03184304) - STRLEN(REPLACE(?targetMotifMatchCigarP16861MF_03184304, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1316), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP16861MF_03184304, 1, (STRLEN(?targetMotifMatchCigarP16861MF_03184304) - STRLEN(REPLACE(?targetMotifMatchCigarP16861MF_03184304, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1316), '}'), '')))), '[^-]', ''))) AS ?step2317) .
BIND(((?step2317 + ?targetMotifMatchRegionMatchBeginPositionMF_03184305) - 1) AS ?thisPositionOn76) .
BIND(?this AS ?pfs1t318) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn75))) AS ?pfsb72) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn76))) AS ?pfse73) .
FILTER (REGEX('[TS][ILMV]SNN', SUBSTR(?thisSequenceValue, ?thisPositionOn75, (?thisPositionOn76 - ?thisPositionOn75)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03184a71')) AS ?annotation71) .
BIND(?this AS ?pfs70) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch323 faldo:location ?templateMotifSequenceMatchRegionP16861324 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP16861326 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP16861MF_03184319 .
?templateMotifSequenceMatchRegionP16861324 faldo:begin ?templateMotifSequenceMatchBeginP16861325 .
?templateMotifSequenceMatchBeginP16861325 faldo:position ?templateMotifSequenceMatchBeginPositionP16861320 ;
faldo:reference isoform:P16861-1 .
?templateMotifSequenceProfileAlignmentOperationP16861326 edam:has_input signature:MF_03184 ;
rdf:type edam:operation_0300 .
?targetMotifMatch327 faldo:location ?targetMotifMatchRegionMatch328 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03184330 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP16861MF_03184321 .
?targetMotifMatchRegionMatch328 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03184329 .
?targetMotifMatchRegionMatchBeginMF_03184329 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03184322 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03184330 edam:has_input signature:MF_03184 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP16861MF_03184319, 1, (STRLEN(?templateMotifCigarP16861MF_03184319) - STRLEN(REPLACE(?templateMotifCigarP16861MF_03184319, CONCAT('^(?:-*[^-]){', STR(((767 - ?templateMotifSequenceMatchBeginPositionP16861320) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1331) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP16861MF_03184321, 1, (STRLEN(?targetMotifMatchCigarP16861MF_03184321) - STRLEN(REPLACE(?targetMotifMatchCigarP16861MF_03184321, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1331), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP16861MF_03184321, 1, (STRLEN(?targetMotifMatchCigarP16861MF_03184321) - STRLEN(REPLACE(?targetMotifMatchCigarP16861MF_03184321, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1331), '}'), '')))), '[^-]', ''))) AS ?step2332) .
BIND(((?step2332 + ?targetMotifMatchRegionMatchBeginPositionMF_03184322) - 1) AS ?thisPositionOn82) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP16861MF_03184319, 1, (STRLEN(?templateMotifCigarP16861MF_03184319) - STRLEN(REPLACE(?templateMotifCigarP16861MF_03184319, CONCAT('^(?:-*[^-]){', STR(((769 - ?templateMotifSequenceMatchBeginPositionP16861320) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1333) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP16861MF_03184321, 1, (STRLEN(?targetMotifMatchCigarP16861MF_03184321) - STRLEN(REPLACE(?targetMotifMatchCigarP16861MF_03184321, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1333), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP16861MF_03184321, 1, (STRLEN(?targetMotifMatchCigarP16861MF_03184321) - STRLEN(REPLACE(?targetMotifMatchCigarP16861MF_03184321, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1333), '}'), '')))), '[^-]', ''))) AS ?step2334) .
BIND(((?step2334 + ?targetMotifMatchRegionMatchBeginPositionMF_03184322) - 1) AS ?thisPositionOn83) .
BIND(?this AS ?pfs1t335) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn82))) AS ?pfsb79) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn83))) AS ?pfse80) .
FILTER (REGEX('[MQ]G[GA]', SUBSTR(?thisSequenceValue, ?thisPositionOn82, (?thisPositionOn83 - ?thisPositionOn82)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03184a78')) AS ?annotation78) .
BIND(?this AS ?pfs77) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch340 faldo:location ?templateMotifSequenceMatchRegionP16861341 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP16861343 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP16861MF_03184336 .
?templateMotifSequenceMatchRegionP16861341 faldo:begin ?templateMotifSequenceMatchBeginP16861342 .
?templateMotifSequenceMatchBeginP16861342 faldo:position ?templateMotifSequenceMatchBeginPositionP16861337 ;
faldo:reference isoform:P16861-1 .
?templateMotifSequenceProfileAlignmentOperationP16861343 edam:has_input signature:MF_03184 ;
rdf:type edam:operation_0300 .
?targetMotifMatch344 faldo:location ?targetMotifMatchRegionMatch345 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03184347 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP16861MF_03184338 .
?targetMotifMatchRegionMatch345 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03184346 .
?targetMotifMatchRegionMatchBeginMF_03184346 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03184339 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03184347 edam:has_input signature:MF_03184 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP16861MF_03184336, 1, (STRLEN(?templateMotifCigarP16861MF_03184336) - STRLEN(REPLACE(?templateMotifCigarP16861MF_03184336, CONCAT('^(?:-*[^-]){', STR(((859 - ?templateMotifSequenceMatchBeginPositionP16861337) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1348) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP16861MF_03184338, 1, (STRLEN(?targetMotifMatchCigarP16861MF_03184338) - STRLEN(REPLACE(?targetMotifMatchCigarP16861MF_03184338, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1348), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP16861MF_03184338, 1, (STRLEN(?targetMotifMatchCigarP16861MF_03184338) - STRLEN(REPLACE(?targetMotifMatchCigarP16861MF_03184338, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1348), '}'), '')))), '[^-]', ''))) AS ?step2349) .
BIND(((?step2349 + ?targetMotifMatchRegionMatchBeginPositionMF_03184339) - 1) AS ?thisPositionOn89) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP16861MF_03184336, 1, (STRLEN(?templateMotifCigarP16861MF_03184336) - STRLEN(REPLACE(?templateMotifCigarP16861MF_03184336, CONCAT('^(?:-*[^-]){', STR(((862 - ?templateMotifSequenceMatchBeginPositionP16861337) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1350) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP16861MF_03184338, 1, (STRLEN(?targetMotifMatchCigarP16861MF_03184338) - STRLEN(REPLACE(?targetMotifMatchCigarP16861MF_03184338, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1350), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP16861MF_03184338, 1, (STRLEN(?targetMotifMatchCigarP16861MF_03184338) - STRLEN(REPLACE(?targetMotifMatchCigarP16861MF_03184338, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1350), '}'), '')))), '[^-]', ''))) AS ?step2351) .
BIND(((?step2351 + ?targetMotifMatchRegionMatchBeginPositionMF_03184339) - 1) AS ?thisPositionOn90) .
BIND(?this AS ?pfs1t352) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn89))) AS ?pfsb86) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn90))) AS ?pfse87) .
FILTER (REGEX('H[ARNDCQEGHILKMFPSTWYVBZJUOX]QQ', SUBSTR(?thisSequenceValue, ?thisPositionOn89, (?thisPositionOn90 - ?thisPositionOn89)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03184a85')) AS ?annotation85) .
BIND(?this AS ?pfs84) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch357 faldo:location ?templateMotifSequenceMatchRegionP16861358 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP16861360 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP16861MF_03184353 .
?templateMotifSequenceMatchRegionP16861358 faldo:begin ?templateMotifSequenceMatchBeginP16861359 .
?templateMotifSequenceMatchBeginP16861359 faldo:position ?templateMotifSequenceMatchBeginPositionP16861354 ;
faldo:reference isoform:P16861-1 .
?templateMotifSequenceProfileAlignmentOperationP16861360 edam:has_input signature:MF_03184 ;
rdf:type edam:operation_0300 .
?targetMotifMatch361 faldo:location ?targetMotifMatchRegionMatch362 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03184364 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP16861MF_03184355 .
?targetMotifMatchRegionMatch362 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03184363 .
?targetMotifMatchRegionMatchBeginMF_03184363 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03184356 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03184364 edam:has_input signature:MF_03184 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP16861MF_03184353, 1, (STRLEN(?templateMotifCigarP16861MF_03184353) - STRLEN(REPLACE(?templateMotifCigarP16861MF_03184353, CONCAT('^(?:-*[^-]){', STR(((356 - ?templateMotifSequenceMatchBeginPositionP16861354) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1365) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP16861MF_03184355, 1, (STRLEN(?targetMotifMatchCigarP16861MF_03184355) - STRLEN(REPLACE(?targetMotifMatchCigarP16861MF_03184355, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1365), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP16861MF_03184355, 1, (STRLEN(?targetMotifMatchCigarP16861MF_03184355) - STRLEN(REPLACE(?targetMotifMatchCigarP16861MF_03184355, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1365), '}'), '')))), '[^-]', ''))) AS ?step2366) .
BIND(((?step2366 + ?targetMotifMatchRegionMatchBeginPositionMF_03184356) - 1) AS ?thisPositionOn95) .
BIND(?thisPositionOn95 AS ?thisPositionOn96) .
BIND(?this AS ?pfs1t367) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn95))) AS ?pfsb93) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn96))) AS ?pfse94) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn95, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_03184a92')) AS ?annotation92) .
BIND(?this AS ?pfs91) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch372 faldo:location ?templateMotifSequenceMatchRegionP16861373 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP16861375 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP16861MF_03184368 .
?templateMotifSequenceMatchRegionP16861373 faldo:begin ?templateMotifSequenceMatchBeginP16861374 .
?templateMotifSequenceMatchBeginP16861374 faldo:position ?templateMotifSequenceMatchBeginPositionP16861369 ;
faldo:reference isoform:P16861-1 .
?templateMotifSequenceProfileAlignmentOperationP16861375 edam:has_input signature:MF_03184 ;
rdf:type edam:operation_0300 .
?targetMotifMatch376 faldo:location ?targetMotifMatchRegionMatch377 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03184379 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP16861MF_03184370 .
?targetMotifMatchRegionMatch377 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03184378 .
?targetMotifMatchRegionMatchBeginMF_03184378 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03184371 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03184379 edam:has_input signature:MF_03184 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP16861MF_03184368, 1, (STRLEN(?templateMotifCigarP16861MF_03184368) - STRLEN(REPLACE(?templateMotifCigarP16861MF_03184368, CONCAT('^(?:-*[^-]){', STR(((309 - ?templateMotifSequenceMatchBeginPositionP16861369) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1380) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP16861MF_03184370, 1, (STRLEN(?targetMotifMatchCigarP16861MF_03184370) - STRLEN(REPLACE(?targetMotifMatchCigarP16861MF_03184370, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1380), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP16861MF_03184370, 1, (STRLEN(?targetMotifMatchCigarP16861MF_03184370) - STRLEN(REPLACE(?targetMotifMatchCigarP16861MF_03184370, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1380), '}'), '')))), '[^-]', ''))) AS ?step2381) .
BIND(((?step2381 + ?targetMotifMatchRegionMatchBeginPositionMF_03184371) - 1) AS ?thisPositionOn102) .
BIND(?thisPositionOn102 AS ?thisPositionOn103) .
BIND(?this AS ?pfs1t382) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn102))) AS ?pfsb99) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn103))) AS ?pfse100) .
FILTER (REGEX('[DE]', SUBSTR(?thisSequenceValue, ?thisPositionOn102, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_03184a98')) AS ?annotation98) .
BIND(?this AS ?pfs97) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch387 faldo:location ?templateMotifSequenceMatchRegionP16861388 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP16861390 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP16861MF_03184383 .
?templateMotifSequenceMatchRegionP16861388 faldo:begin ?templateMotifSequenceMatchBeginP16861389 .
?templateMotifSequenceMatchBeginP16861389 faldo:position ?templateMotifSequenceMatchBeginPositionP16861384 ;
faldo:reference isoform:P16861-1 .
?templateMotifSequenceProfileAlignmentOperationP16861390 edam:has_input signature:MF_03184 ;
rdf:type edam:operation_0300 .
?targetMotifMatch391 faldo:location ?targetMotifMatchRegionMatch392 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03184394 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP16861MF_03184385 .
?targetMotifMatchRegionMatch392 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03184393 .
?targetMotifMatchRegionMatchBeginMF_03184393 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03184386 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03184394 edam:has_input signature:MF_03184 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP16861MF_03184383, 1, (STRLEN(?templateMotifCigarP16861MF_03184383) - STRLEN(REPLACE(?templateMotifCigarP16861MF_03184383, CONCAT('^(?:-*[^-]){', STR(((215 - ?templateMotifSequenceMatchBeginPositionP16861384) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1395) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP16861MF_03184385, 1, (STRLEN(?targetMotifMatchCigarP16861MF_03184385) - STRLEN(REPLACE(?targetMotifMatchCigarP16861MF_03184385, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1395), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP16861MF_03184385, 1, (STRLEN(?targetMotifMatchCigarP16861MF_03184385) - STRLEN(REPLACE(?targetMotifMatchCigarP16861MF_03184385, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1395), '}'), '')))), '[^-]', ''))) AS ?step2396) .
BIND(((?step2396 + ?targetMotifMatchRegionMatchBeginPositionMF_03184386) - 1) AS ?thisPositionOn109) .
BIND(?thisPositionOn109 AS ?thisPositionOn110) .
BIND(?this AS ?pfs1t397) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn109))) AS ?pfsb106) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn110))) AS ?pfse107) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn109, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_03184a105')) AS ?annotation105) .
BIND(?this AS ?pfs104) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch402 faldo:location ?templateMotifSequenceMatchRegionP16861403 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP16861405 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP16861MF_03184398 .
?templateMotifSequenceMatchRegionP16861403 faldo:begin ?templateMotifSequenceMatchBeginP16861404 .
?templateMotifSequenceMatchBeginP16861404 faldo:position ?templateMotifSequenceMatchBeginPositionP16861399 ;
faldo:reference isoform:P16861-1 .
?templateMotifSequenceProfileAlignmentOperationP16861405 edam:has_input signature:MF_03184 ;
rdf:type edam:operation_0300 .
?targetMotifMatch406 faldo:location ?targetMotifMatchRegionMatch407 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03184409 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP16861MF_03184400 .
?targetMotifMatchRegionMatch407 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03184408 .
?targetMotifMatchRegionMatchBeginMF_03184408 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03184401 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03184409 edam:has_input signature:MF_03184 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP16861MF_03184398, 1, (STRLEN(?templateMotifCigarP16861MF_03184398) - STRLEN(REPLACE(?templateMotifCigarP16861MF_03184398, CONCAT('^(?:-*[^-]){', STR(((391 - ?templateMotifSequenceMatchBeginPositionP16861399) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1410) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP16861MF_03184400, 1, (STRLEN(?targetMotifMatchCigarP16861MF_03184400) - STRLEN(REPLACE(?targetMotifMatchCigarP16861MF_03184400, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1410), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP16861MF_03184400, 1, (STRLEN(?targetMotifMatchCigarP16861MF_03184400) - STRLEN(REPLACE(?targetMotifMatchCigarP16861MF_03184400, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1410), '}'), '')))), '[^-]', ''))) AS ?step2411) .
BIND(((?step2411 + ?targetMotifMatchRegionMatchBeginPositionMF_03184401) - 1) AS ?thisPositionOn117) .
BIND(?thisPositionOn117 AS ?thisPositionOn118) .
BIND(?this AS ?pfs1t412) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn117))) AS ?pfsb113) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn118))) AS ?pfse114) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn117, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_03184a112')) AS ?annotation112) .
BIND(?this AS ?pfs111) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch417 faldo:location ?templateMotifSequenceMatchRegionP16861418 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP16861420 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP16861MF_03184413 .
?templateMotifSequenceMatchRegionP16861418 faldo:begin ?templateMotifSequenceMatchBeginP16861419 .
?templateMotifSequenceMatchBeginP16861419 faldo:position ?templateMotifSequenceMatchBeginPositionP16861414 ;
faldo:reference isoform:P16861-1 .
?templateMotifSequenceProfileAlignmentOperationP16861420 edam:has_input signature:MF_03184 ;
rdf:type edam:operation_0300 .
?targetMotifMatch421 faldo:location ?targetMotifMatchRegionMatch422 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03184424 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP16861MF_03184415 .
?targetMotifMatchRegionMatch422 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03184423 .
?targetMotifMatchRegionMatchBeginMF_03184423 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03184416 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03184424 edam:has_input signature:MF_03184 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP16861MF_03184413, 1, (STRLEN(?templateMotifCigarP16861MF_03184413) - STRLEN(REPLACE(?templateMotifCigarP16861MF_03184413, CONCAT('^(?:-*[^-]){', STR(((455 - ?templateMotifSequenceMatchBeginPositionP16861414) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1425) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP16861MF_03184415, 1, (STRLEN(?targetMotifMatchCigarP16861MF_03184415) - STRLEN(REPLACE(?targetMotifMatchCigarP16861MF_03184415, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1425), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP16861MF_03184415, 1, (STRLEN(?targetMotifMatchCigarP16861MF_03184415) - STRLEN(REPLACE(?targetMotifMatchCigarP16861MF_03184415, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1425), '}'), '')))), '[^-]', ''))) AS ?step2426) .
BIND(((?step2426 + ?targetMotifMatchRegionMatchBeginPositionMF_03184416) - 1) AS ?thisPositionOn125) .
BIND(?thisPositionOn125 AS ?thisPositionOn126) .
BIND(?this AS ?pfs1t427) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn125))) AS ?pfsb121) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn126))) AS ?pfse122) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn125, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_03184a120')) AS ?annotation120) .
BIND(?this AS ?pfs119) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch432 faldo:location ?templateMotifSequenceMatchRegionP16861433 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP16861435 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP16861MF_03184428 .
?templateMotifSequenceMatchRegionP16861433 faldo:begin ?templateMotifSequenceMatchBeginP16861434 .
?templateMotifSequenceMatchBeginP16861434 faldo:position ?templateMotifSequenceMatchBeginPositionP16861429 ;
faldo:reference isoform:P16861-1 .
?templateMotifSequenceProfileAlignmentOperationP16861435 edam:has_input signature:MF_03184 ;
rdf:type edam:operation_0300 .
?targetMotifMatch436 faldo:location ?targetMotifMatchRegionMatch437 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03184439 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP16861MF_03184430 .
?targetMotifMatchRegionMatch437 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03184438 .
?targetMotifMatchRegionMatchBeginMF_03184438 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03184431 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03184439 edam:has_input signature:MF_03184 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP16861MF_03184428, 1, (STRLEN(?templateMotifCigarP16861MF_03184428) - STRLEN(REPLACE(?templateMotifCigarP16861MF_03184428, CONCAT('^(?:-*[^-]){', STR(((482 - ?templateMotifSequenceMatchBeginPositionP16861429) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1440) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP16861MF_03184430, 1, (STRLEN(?targetMotifMatchCigarP16861MF_03184430) - STRLEN(REPLACE(?targetMotifMatchCigarP16861MF_03184430, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1440), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP16861MF_03184430, 1, (STRLEN(?targetMotifMatchCigarP16861MF_03184430) - STRLEN(REPLACE(?targetMotifMatchCigarP16861MF_03184430, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1440), '}'), '')))), '[^-]', ''))) AS ?step2441) .
BIND(((?step2441 + ?targetMotifMatchRegionMatchBeginPositionMF_03184431) - 1) AS ?thisPositionOn133) .
BIND(?thisPositionOn133 AS ?thisPositionOn134) .
BIND(?this AS ?pfs1t442) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn133))) AS ?pfsb129) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn134))) AS ?pfse130) .
FILTER (REGEX('[RK]', SUBSTR(?thisSequenceValue, ?thisPositionOn133, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_03184a128')) AS ?annotation128) .
BIND(?this AS ?pfs127) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch447 faldo:location ?templateMotifSequenceMatchRegionP16861448 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP16861450 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP16861MF_03184443 .
?templateMotifSequenceMatchRegionP16861448 faldo:begin ?templateMotifSequenceMatchBeginP16861449 .
?templateMotifSequenceMatchBeginP16861449 faldo:position ?templateMotifSequenceMatchBeginPositionP16861444 ;
faldo:reference isoform:P16861-1 .
?templateMotifSequenceProfileAlignmentOperationP16861450 edam:has_input signature:MF_03184 ;
rdf:type edam:operation_0300 .
?targetMotifMatch451 faldo:location ?targetMotifMatchRegionMatch452 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03184454 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP16861MF_03184445 .
?targetMotifMatchRegionMatch452 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03184453 .
?targetMotifMatchRegionMatchBeginMF_03184453 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03184446 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03184454 edam:has_input signature:MF_03184 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP16861MF_03184443, 1, (STRLEN(?templateMotifCigarP16861MF_03184443) - STRLEN(REPLACE(?templateMotifCigarP16861MF_03184443, CONCAT('^(?:-*[^-]){', STR(((665 - ?templateMotifSequenceMatchBeginPositionP16861444) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1455) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP16861MF_03184445, 1, (STRLEN(?targetMotifMatchCigarP16861MF_03184445) - STRLEN(REPLACE(?targetMotifMatchCigarP16861MF_03184445, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1455), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP16861MF_03184445, 1, (STRLEN(?targetMotifMatchCigarP16861MF_03184445) - STRLEN(REPLACE(?targetMotifMatchCigarP16861MF_03184445, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1455), '}'), '')))), '[^-]', ''))) AS ?step2456) .
BIND(((?step2456 + ?targetMotifMatchRegionMatchBeginPositionMF_03184446) - 1) AS ?thisPositionOn140) .
BIND(?thisPositionOn140 AS ?thisPositionOn141) .
BIND(?this AS ?pfs1t457) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn140))) AS ?pfsb137) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn141))) AS ?pfse138) .
FILTER (REGEX('[RK]', SUBSTR(?thisSequenceValue, ?thisPositionOn140, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_03184a136')) AS ?annotation136) .
BIND(?this AS ?pfs135) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch462 faldo:location ?templateMotifSequenceMatchRegionP16861463 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP16861465 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP16861MF_03184458 .
?templateMotifSequenceMatchRegionP16861463 faldo:begin ?templateMotifSequenceMatchBeginP16861464 .
?templateMotifSequenceMatchBeginP16861464 faldo:position ?templateMotifSequenceMatchBeginPositionP16861459 ;
faldo:reference isoform:P16861-1 .
?templateMotifSequenceProfileAlignmentOperationP16861465 edam:has_input signature:MF_03184 ;
rdf:type edam:operation_0300 .
?targetMotifMatch466 faldo:location ?targetMotifMatchRegionMatch467 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03184469 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP16861MF_03184460 .
?targetMotifMatchRegionMatch467 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03184468 .
?targetMotifMatchRegionMatchBeginMF_03184468 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03184461 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03184469 edam:has_input signature:MF_03184 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP16861MF_03184458, 1, (STRLEN(?templateMotifCigarP16861MF_03184458) - STRLEN(REPLACE(?templateMotifCigarP16861MF_03184458, CONCAT('^(?:-*[^-]){', STR(((760 - ?templateMotifSequenceMatchBeginPositionP16861459) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1470) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP16861MF_03184460, 1, (STRLEN(?targetMotifMatchCigarP16861MF_03184460) - STRLEN(REPLACE(?targetMotifMatchCigarP16861MF_03184460, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1470), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP16861MF_03184460, 1, (STRLEN(?targetMotifMatchCigarP16861MF_03184460) - STRLEN(REPLACE(?targetMotifMatchCigarP16861MF_03184460, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1470), '}'), '')))), '[^-]', ''))) AS ?step2471) .
BIND(((?step2471 + ?targetMotifMatchRegionMatchBeginPositionMF_03184461) - 1) AS ?thisPositionOn147) .
BIND(?thisPositionOn147 AS ?thisPositionOn148) .
BIND(?this AS ?pfs1t472) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn147))) AS ?pfsb144) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn148))) AS ?pfse145) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn147, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_03184a143')) AS ?annotation143) .
BIND(?this AS ?pfs142) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch477 faldo:location ?templateMotifSequenceMatchRegionP16861478 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP16861480 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP16861MF_03184473 .
?templateMotifSequenceMatchRegionP16861478 faldo:begin ?templateMotifSequenceMatchBeginP16861479 .
?templateMotifSequenceMatchBeginP16861479 faldo:position ?templateMotifSequenceMatchBeginPositionP16861474 ;
faldo:reference isoform:P16861-1 .
?templateMotifSequenceProfileAlignmentOperationP16861480 edam:has_input signature:MF_03184 ;
rdf:type edam:operation_0300 .
?targetMotifMatch481 faldo:location ?targetMotifMatchRegionMatch482 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03184484 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP16861MF_03184475 .
?targetMotifMatchRegionMatch482 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03184483 .
?targetMotifMatchRegionMatchBeginMF_03184483 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03184476 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03184484 edam:has_input signature:MF_03184 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP16861MF_03184473, 1, (STRLEN(?templateMotifCigarP16861MF_03184473) - STRLEN(REPLACE(?templateMotifCigarP16861MF_03184473, CONCAT('^(?:-*[^-]){', STR(((827 - ?templateMotifSequenceMatchBeginPositionP16861474) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1485) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP16861MF_03184475, 1, (STRLEN(?targetMotifMatchCigarP16861MF_03184475) - STRLEN(REPLACE(?targetMotifMatchCigarP16861MF_03184475, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1485), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP16861MF_03184475, 1, (STRLEN(?targetMotifMatchCigarP16861MF_03184475) - STRLEN(REPLACE(?targetMotifMatchCigarP16861MF_03184475, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1485), '}'), '')))), '[^-]', ''))) AS ?step2486) .
BIND(((?step2486 + ?targetMotifMatchRegionMatchBeginPositionMF_03184476) - 1) AS ?thisPositionOn154) .
BIND(?thisPositionOn154 AS ?thisPositionOn155) .
BIND(?this AS ?pfs1t487) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn154))) AS ?pfsb151) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn155))) AS ?pfse152) .
FILTER (REGEX('[ED]', SUBSTR(?thisSequenceValue, ?thisPositionOn154, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_03184a150')) AS ?annotation150) .
BIND(?this AS ?pfs149) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch492 faldo:location ?templateMotifSequenceMatchRegionP16861493 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP16861495 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP16861MF_03184488 .
?templateMotifSequenceMatchRegionP16861493 faldo:begin ?templateMotifSequenceMatchBeginP16861494 .
?templateMotifSequenceMatchBeginP16861494 faldo:position ?templateMotifSequenceMatchBeginPositionP16861489 ;
faldo:reference isoform:P16861-1 .
?templateMotifSequenceProfileAlignmentOperationP16861495 edam:has_input signature:MF_03184 ;
rdf:type edam:operation_0300 .
?targetMotifMatch496 faldo:location ?targetMotifMatchRegionMatch497 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03184499 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP16861MF_03184490 .
?targetMotifMatchRegionMatch497 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03184498 .
?targetMotifMatchRegionMatchBeginMF_03184498 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03184491 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03184499 edam:has_input signature:MF_03184 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP16861MF_03184488, 1, (STRLEN(?templateMotifCigarP16861MF_03184488) - STRLEN(REPLACE(?templateMotifCigarP16861MF_03184488, CONCAT('^(?:-*[^-]){', STR(((853 - ?templateMotifSequenceMatchBeginPositionP16861489) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1500) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP16861MF_03184490, 1, (STRLEN(?targetMotifMatchCigarP16861MF_03184490) - STRLEN(REPLACE(?targetMotifMatchCigarP16861MF_03184490, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1500), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP16861MF_03184490, 1, (STRLEN(?targetMotifMatchCigarP16861MF_03184490) - STRLEN(REPLACE(?targetMotifMatchCigarP16861MF_03184490, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1500), '}'), '')))), '[^-]', ''))) AS ?step2501) .
BIND(((?step2501 + ?targetMotifMatchRegionMatchBeginPositionMF_03184491) - 1) AS ?thisPositionOn161) .
BIND(?thisPositionOn161 AS ?thisPositionOn162) .
BIND(?this AS ?pfs1t502) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn161))) AS ?pfsb158) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn162))) AS ?pfse159) .
FILTER (REGEX('[RK]', SUBSTR(?thisSequenceValue, ?thisPositionOn161, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_03184a157')) AS ?annotation157) .
BIND(?this AS ?pfs156) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch507 faldo:location ?templateMotifSequenceMatchRegionP16861508 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP16861510 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP16861MF_03184503 .
?templateMotifSequenceMatchRegionP16861508 faldo:begin ?templateMotifSequenceMatchBeginP16861509 .
?templateMotifSequenceMatchBeginP16861509 faldo:position ?templateMotifSequenceMatchBeginPositionP16861504 ;
faldo:reference isoform:P16861-1 .
?templateMotifSequenceProfileAlignmentOperationP16861510 edam:has_input signature:MF_03184 ;
rdf:type edam:operation_0300 .
?targetMotifMatch511 faldo:location ?targetMotifMatchRegionMatch512 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03184514 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP16861MF_03184505 .
?targetMotifMatchRegionMatch512 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03184513 .
?targetMotifMatchRegionMatchBeginMF_03184513 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03184506 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03184514 edam:has_input signature:MF_03184 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP16861MF_03184503, 1, (STRLEN(?templateMotifCigarP16861MF_03184503) - STRLEN(REPLACE(?templateMotifCigarP16861MF_03184503, CONCAT('^(?:-*[^-]){', STR(((952 - ?templateMotifSequenceMatchBeginPositionP16861504) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1515) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP16861MF_03184505, 1, (STRLEN(?targetMotifMatchCigarP16861MF_03184505) - STRLEN(REPLACE(?targetMotifMatchCigarP16861MF_03184505, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1515), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP16861MF_03184505, 1, (STRLEN(?targetMotifMatchCigarP16861MF_03184505) - STRLEN(REPLACE(?targetMotifMatchCigarP16861MF_03184505, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1515), '}'), '')))), '[^-]', ''))) AS ?step2516) .
BIND(((?step2516 + ?targetMotifMatchRegionMatchBeginPositionMF_03184506) - 1) AS ?thisPositionOn168) .
BIND(?thisPositionOn168 AS ?thisPositionOn169) .
BIND(?this AS ?pfs1t517) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn168))) AS ?pfsb165) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn169))) AS ?pfse166) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn168, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_03184a164')) AS ?annotation164) .
BIND(?this AS ?pfs163) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:7742 .
BIND(?this AS ?case11) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:4892 .
BIND(?this AS ?case12) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
VALUES ?supertaxon518 {taxon:7742 taxon:4892}
?thisOrganism rdfs:subClassOf+ ?supertaxon518 .
})) .
BIND(?this AS ?case13) .
}
}
"xsd:string |
