| http://purl.uniprot.org/unirules/MF_03185#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:869017 up:source unirule:MF_03185 .
_:869018 up:source unirule:MF_03185 .
_:869019 up:source unirule:MF_03185 .
_:869020 up:source unirule:MF_03185 .
_:869021 up:source unirule:MF_03185 .
_:869022 up:source unirule:MF_03185 .
_:869023 up:source unirule:MF_03185 .
_:869024 up:source unirule:MF_03185 .
_:869025 up:source unirule:MF_03185 .
_:869026 up:source unirule:MF_03185 .
_:869027 up:source unirule:MF_03185 .
_:869028 up:source unirule:MF_03185 .
_:869029 up:source unirule:MF_03185 .
_:869030 up:source unirule:MF_03185 .
_:869031 up:source unirule:MF_03185 .
_:869032 up:source unirule:MF_03185 .
_:869033 up:source unirule:MF_03185 .
_:869034 up:source unirule:MF_03185 .
_:869035 up:source unirule:MF_03185 .
_:869036 up:source unirule:MF_03185 .
_:869037 up:source unirule:MF_03185 .
_:869038 up:source unirule:MF_03185 .
_:869039 up:source unirule:MF_03185 .
_:869040 up:source unirule:MF_03185 .
_:869041 up:source unirule:MF_03185 .
_:869042 up:source unirule:MF_03185 .
_:869043 up:source unirule:MF_03185 .
_:869044 up:source unirule:MF_03185 .
_:869045 up:source unirule:MF_03185 .
_:869046 up:source unirule:MF_03185 .
_:869047 up:source unirule:MF_03185 .
_:869048 up:source unirule:MF_03185 .
_:869049 up:source unirule:MF_03185 .
_:869050 up:source unirule:MF_03185 .
_:869051 up:source unirule:MF_03185 .
_:869052 up:source unirule:MF_03185 .
_:869053 up:source unirule:MF_03185 .
_:869054 up:source unirule:MF_03185 .
_:869055 up:source unirule:MF_03185 .
_:869056 up:source unirule:MF_03185 .
_:869057 up:source unirule:MF_03185 .
_:869058 up:source unirule:MF_03185 .
_:869059 up:source unirule:MF_03185 .
_:869060 up:source unirule:MF_03185 .
_:869061 up:source unirule:MF_03185 .
_:869062 up:source unirule:MF_03185 .
_:869063 up:source unirule:MF_03185 .
?this up:annotation ?annotation0 ,
?annotation1 ,
?annotation3 ;
up:classifiedWith GO:0003872 ,
GO:0005737 ,
GO:0006096 ,
keyword:324 ,
keyword:418 ,
keyword:460 ,
keyword:479 ,
keyword:808 ,
keyword:963 .
?annotation0 a up:Pathway_Annotation ;
rdfs:comment 'Carbohydrate degradation; glycolysis; D-glyceraldehyde 3-phosphate and glycerone phosphate from D-glucose: step 3/4.' .
?annotation1 a up:Subcellular_Location_Annotation .
?annotation1li2 up:cellularComponent .
?annotation3 a up:Similarity_Annotation ;
rdfs:comment "Belongs to the phosphofructokinase type A (PFKA) family. PPi-dependent PFK group II subfamily. Clade 'Long' sub-subfamily." .
?case4 up:classifiedWith keyword:547 ,
keyword:67 .
?case5 up:classifiedWith keyword:21 .
?case7 up:alternativeName ?name9 ;
up:recommendedName ?name8 .
?name8 up:ecName '2.7.1.11' ;
up:fullName 'Probable ATP-dependent 6-phosphofructokinase' ;
up:shortName 'ATP-PFK' ,
'Phosphofructokinase' ;
rdf:type up:Structured_Name .
?name9 up:fullName 'Phosphohexokinase' ;
rdf:type up:Structured_Name .
?case10 up:alternativeName ?name12 ,
?name13 ,
?name14 ;
up:recommendedName ?name11 .
?name11 up:ecName '2.7.1.90' ;
up:fullName 'Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta' ;
up:shortName 'PFP' ;
rdf:type up:Structured_Name .
?name12 up:fullName '6-phosphofructokinase, pyrophosphate dependent' ;
rdf:type up:Structured_Name .
?name13 up:fullName 'PPi-PFK' ;
rdf:type up:Structured_Name .
?name14 up:fullName 'Pyrophosphate-dependent 6-phosphofructose-1-kinase' ;
rdf:type up:Structured_Name .
?case15 up:alternativeName ?name17 ,
?name18 ,
?name19 ;
up:recommendedName ?name16 .
?name16 up:ecName '2.7.1.90' ;
up:fullName 'Pyrophosphate--fructose 6-phosphate 1-phosphotransferase' ;
rdf:type up:Structured_Name .
?name17 up:fullName '6-phosphofructokinase, pyrophosphate dependent' ;
rdf:type up:Structured_Name .
?name18 up:fullName 'PPi-dependent phosphofructokinase' ;
up:shortName 'PPi-PFK' ;
rdf:type up:Structured_Name .
?name19 up:fullName 'Pyrophosphate-dependent 6-phosphofructose-1-kinase' ;
rdf:type up:Structured_Name .
?case23 up:recommendedName ?name24 .
?name24 up:ecName '2.7.1.-' ;
up:fullName '6-phosphofructokinase' ;
rdf:type up:Structured_Name .
?pfs25 up:annotation ?annotation26 .
?annotation26 faldo:begin ?pfsb27 ;
faldo:end ?pfse28 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Important for catalytic activity and substrate specificity; stabilizes the transition state when the phosphoryl donor is PPi; prevents ATP from binding by mimicking the alpha-phosphate group of ATP' .
?pfsb27 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?pfse28 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?pfs31 up:annotation ?annotation32 .
?annotation32 faldo:begin ?pfsb33 ;
faldo:end ?pfse34 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Important for substrate specificity; cannot use PPi as phosphoryl donor' .
?pfsb33 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?pfse34 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?pfs37 up:annotation ?annotation38 .
?annotation38 faldo:begin ?pfsb39 ;
faldo:end ?pfse40 ;
up:ligand ?ligand41 ;
rdf:type up:Binding_Site_Annotation .
?pfsb39 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?pfse40 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?ligand41 rdfs:subClassOf chebi:33019 .
?pfs44 up:annotation ?annotation45 .
?annotation45 faldo:begin ?pfsb46 ;
faldo:end ?pfse47 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Important for catalytic activity; stabilizes the transition state when the phosphoryl donor is PPi' .
?pfsb46 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?pfse47 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?pfs50 up:annotation ?annotation51 .
?annotation51 faldo:begin ?pfsb52 ;
faldo:end ?pfse53 ;
up:ligand ?ligand54 ;
rdf:type up:Binding_Site_Annotation .
?pfsb52 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?pfse53 faldo:position ?thisPositionOn57 ;
rdf:type faldo:ExactPosition .
?ligand54 rdfs:subClassOf ?molecule55 .
?molecule55 rdfs:label 'substrate' .
?pfs58 up:annotation ?annotation59 .
?annotation59 faldo:begin ?pfsb60 ;
faldo:end ?pfse61 ;
up:ligand ?ligand62 ;
rdf:type up:Binding_Site_Annotation .
?pfsb60 faldo:position ?thisPositionOn64 ;
rdf:type faldo:ExactPosition .
?pfse61 faldo:position ?thisPositionOn65 ;
rdf:type faldo:ExactPosition .
?ligand62 rdfs:subClassOf ?molecule63 .
?molecule63 rdfs:label 'substrate' .
?pfs66 up:annotation ?annotation67 .
?annotation67 faldo:begin ?pfsb68 ;
faldo:end ?pfse69 ;
up:ligand ?ligand70 ;
rdf:type up:Binding_Site_Annotation .
?pfsb68 faldo:position ?thisPositionOn72 ;
rdf:type faldo:ExactPosition .
?pfse69 faldo:position ?thisPositionOn73 ;
rdf:type faldo:ExactPosition .
?ligand70 rdfs:subClassOf ?molecule71 .
?molecule71 rdfs:label 'substrate' .
?pfs74 up:annotation ?annotation75 .
?annotation75 faldo:begin ?pfsb76 ;
faldo:end ?pfse77 ;
up:ligand ?ligand78 ;
rdf:type up:Binding_Site_Annotation .
?pfsb76 faldo:position ?thisPositionOn80 ;
rdf:type faldo:ExactPosition .
?pfse77 faldo:position ?thisPositionOn81 ;
rdf:type faldo:ExactPosition .
?ligand78 rdfs:subClassOf ?molecule79 .
?molecule79 rdfs:label 'substrate' .
?pfs82 up:annotation ?annotation83 .
?annotation83 faldo:begin ?pfsb84 ;
faldo:end ?pfse85 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb84 faldo:position ?thisPositionOn86 ;
rdf:type faldo:ExactPosition .
?pfse85 faldo:position ?thisPositionOn87 ;
rdf:type faldo:ExactPosition .
?pfs88 up:annotation ?annotation89 .
?annotation89 faldo:begin ?pfsb90 ;
faldo:end ?pfse91 ;
up:ligand ?ligand92 ;
rdf:type up:Binding_Site_Annotation .
?pfsb90 faldo:position ?thisPositionOn93 ;
rdf:type faldo:ExactPosition .
?pfse91 faldo:position ?thisPositionOn94 ;
rdf:type faldo:ExactPosition .
?ligand92 rdfs:subClassOf chebi:18420 .
?pfs95 up:annotation ?annotation96 .
?annotation96 faldo:begin ?pfsb97 ;
faldo:end ?pfse98 ;
up:ligand ?ligand99 ;
rdf:type up:Binding_Site_Annotation .
?pfsb97 faldo:position ?thisPositionOn101 ;
rdf:type faldo:ExactPosition .
?pfse98 faldo:position ?thisPositionOn102 ;
rdf:type faldo:ExactPosition .
?ligand99 rdfs:subClassOf ?molecule100 .
?molecule100 rdfs:label 'substrate' .
?pfs103 up:annotation ?annotation104 .
?annotation104 faldo:begin ?pfsb105 ;
faldo:end ?pfse106 ;
up:ligand ?ligand107 ;
rdf:type up:Binding_Site_Annotation .
?pfsb105 faldo:position ?thisPositionOn109 ;
rdf:type faldo:ExactPosition .
?pfse106 faldo:position ?thisPositionOn110 ;
rdf:type faldo:ExactPosition .
?ligand107 rdfs:subClassOf ?molecule108 .
?molecule108 rdfs:label 'substrate' .
?pfs111 up:annotation ?annotation112 .
?annotation112 faldo:begin ?pfsb113 ;
faldo:end ?pfse114 ;
up:ligand ?ligand115 ;
rdf:type up:Binding_Site_Annotation .
?pfsb113 faldo:position ?thisPositionOn117 ;
rdf:type faldo:ExactPosition .
?pfse114 faldo:position ?thisPositionOn118 ;
rdf:type faldo:ExactPosition .
?ligand115 rdfs:subClassOf ?molecule116 .
?molecule116 rdfs:label 'substrate' .
?pfs119 up:annotation ?annotation120 .
?annotation120 faldo:begin ?pfsb121 ;
faldo:end ?pfse122 ;
up:ligand ?ligand123 ;
rdf:type up:Binding_Site_Annotation .
?pfsb121 faldo:position ?thisPositionOn125 ;
rdf:type faldo:ExactPosition .
?pfse122 faldo:position ?thisPositionOn126 ;
rdf:type faldo:ExactPosition .
?ligand123 rdfs:subClassOf ?molecule124 .
?molecule124 rdfs:label 'substrate' .
?pfs127 up:annotation ?annotation128 .
?annotation128 faldo:begin ?pfsb129 ;
faldo:end ?pfse130 ;
up:ligand ?ligand131 ;
rdf:type up:Binding_Site_Annotation .
?pfsb129 faldo:position ?thisPositionOn133 ;
rdf:type faldo:ExactPosition .
?pfse130 faldo:position ?thisPositionOn134 ;
rdf:type faldo:ExactPosition .
?ligand131 rdfs:subClassOf ?molecule132 .
?molecule132 rdfs:label 'substrate' .
?pfs135 up:annotation ?annotation136 .
?annotation136 faldo:begin ?pfsb137 ;
faldo:end ?pfse138 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb137 faldo:position ?thisPositionOn139 ;
rdf:type faldo:ExactPosition .
?pfse138 faldo:position ?thisPositionOn140 ;
rdf:type faldo:ExactPosition .
?pfs141 up:annotation ?annotation142 .
?annotation142 faldo:begin ?pfsb143 ;
faldo:end ?pfse144 ;
up:ligand ?ligand145 ;
rdf:type up:Binding_Site_Annotation .
?pfsb143 faldo:position ?thisPositionOn146 ;
rdf:type faldo:ExactPosition .
?pfse144 faldo:position ?thisPositionOn147 ;
rdf:type faldo:ExactPosition .
?ligand145 rdfs:subClassOf chebi:18420 .
?pfs148 up:annotation ?annotation149 .
?annotation149 faldo:begin ?pfsb150 ;
faldo:end ?pfse151 ;
up:ligand ?ligand152 ;
rdf:type up:Binding_Site_Annotation .
?pfsb150 faldo:position ?thisPositionOn154 ;
rdf:type faldo:ExactPosition .
?pfse151 faldo:position ?thisPositionOn155 ;
rdf:type faldo:ExactPosition .
?ligand152 rdfs:subClassOf ?molecule153 .
?molecule153 rdfs:label 'substrate' .
?pfs156 up:annotation ?annotation157 .
?annotation157 faldo:begin ?pfsb158 ;
faldo:end ?pfse159 ;
up:ligand ?ligand160 ;
rdf:type up:Binding_Site_Annotation .
?pfsb158 faldo:position ?thisPositionOn161 ;
rdf:type faldo:ExactPosition .
?pfse159 faldo:position ?thisPositionOn162 ;
rdf:type faldo:ExactPosition .
?ligand160 rdfs:subClassOf chebi:30616 .
?pfs163 up:annotation ?annotation164 .
?annotation164 faldo:begin ?pfsb165 ;
faldo:end ?pfse166 ;
up:ligand ?ligand167 ;
rdf:type up:Binding_Site_Annotation .
?pfsb165 faldo:position ?thisPositionOn168 ;
rdf:type faldo:ExactPosition .
?pfse166 faldo:position ?thisPositionOn169 ;
rdf:type faldo:ExactPosition .
?ligand167 rdfs:subClassOf chebi:30616 .
?pfs170 up:annotation ?annotation171 .
?annotation171 faldo:begin ?pfsb172 ;
faldo:end ?pfse173 ;
up:ligand ?ligand174 ;
rdf:type up:Binding_Site_Annotation .
?pfsb172 faldo:position ?thisPositionOn175 ;
rdf:type faldo:ExactPosition .
?pfse173 faldo:position ?thisPositionOn176 ;
rdf:type faldo:ExactPosition .
?ligand174 rdfs:subClassOf chebi:30616 .
_:869064 a rdf:Statement ;
up:attribution _:869017 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation0 .
_:869065 a rdf:Statement ;
up:attribution _:869018 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation1 .
_:869066 a rdf:Statement ;
up:attribution _:869019 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:869067 a rdf:Statement ;
up:attribution _:869020 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:869068 a rdf:Statement ;
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rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:418 .
_:869069 a rdf:Statement ;
up:attribution _:869022 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:869070 a rdf:Statement ;
up:attribution _:869023 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:324 .
_:869071 a rdf:Statement ;
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rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:869072 a rdf:Statement ;
up:attribution _:869025 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:869073 a rdf:Statement ;
up:attribution _:869026 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003872 .
_:869074 a rdf:Statement ;
up:attribution _:869027 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006096 .
_:869075 a rdf:Statement ;
up:attribution _:869028 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:869076 a rdf:Statement ;
up:attribution _:869029 ;
rdf:subject ?case4 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
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up:attribution _:869030 ;
rdf:subject ?case4 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
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up:attribution _:869031 ;
rdf:subject ?case5 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:21 .
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rdf:subject ?case7 ;
rdf:predicate up:recommendedName ;
rdf:object ?name8 .
_:869080 a rdf:Statement ;
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rdf:subject ?case7 ;
rdf:predicate up:alternativeName ;
rdf:object ?name9 .
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rdf:subject ?case10 ;
rdf:predicate up:recommendedName ;
rdf:object ?name11 .
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rdf:subject ?case10 ;
rdf:predicate up:alternativeName ;
rdf:object ?name12 .
_:869083 a rdf:Statement ;
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rdf:subject ?case10 ;
rdf:predicate up:alternativeName ;
rdf:object ?name13 .
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rdf:subject ?case10 ;
rdf:predicate up:alternativeName ;
rdf:object ?name14 .
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rdf:subject ?case15 ;
rdf:predicate up:recommendedName ;
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_:869086 a rdf:Statement ;
up:attribution _:869039 ;
rdf:subject ?case15 ;
rdf:predicate up:alternativeName ;
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rdf:subject ?case15 ;
rdf:predicate up:alternativeName ;
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rdf:subject ?case15 ;
rdf:predicate up:alternativeName ;
rdf:object ?name19 .
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rdf:subject ?case23 ;
rdf:predicate up:recommendedName ;
rdf:object ?name24 .
_:869090 a rdf:Statement ;
up:source unirule:MF_03185 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:869091 a rdf:Statement ;
up:attribution _:869043 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:869092 a rdf:Statement ;
up:source unirule:MF_03185 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:869093 a rdf:Statement ;
up:attribution _:869044 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:869094 a rdf:Statement ;
up:source unirule:MF_03185 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:869095 a rdf:Statement ;
up:attribution _:869045 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
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up:source unirule:MF_03185 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
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rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
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rdf:predicate up:annotation ;
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rdf:predicate up:annotation ;
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rdf:subject ?pfs58 ;
rdf:predicate up:annotation ;
rdf:object ?annotation59 .
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up:source unirule:MF_03185 ;
rdf:subject ?pfs66 ;
rdf:predicate up:annotation ;
rdf:object ?annotation67 .
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up:attribution _:869049 ;
rdf:subject ?pfs66 ;
rdf:predicate up:annotation ;
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up:source unirule:MF_03185 ;
rdf:subject ?pfs74 ;
rdf:predicate up:annotation ;
rdf:object ?annotation75 .
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rdf:subject ?pfs74 ;
rdf:predicate up:annotation ;
rdf:object ?annotation75 .
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up:source unirule:MF_03185 ;
rdf:subject ?pfs82 ;
rdf:predicate up:annotation ;
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rdf:subject ?pfs88 ;
rdf:predicate up:annotation ;
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rdf:subject ?pfs88 ;
rdf:predicate up:annotation ;
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up:source unirule:MF_03185 ;
rdf:subject ?pfs95 ;
rdf:predicate up:annotation ;
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rdf:subject ?pfs95 ;
rdf:predicate up:annotation ;
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up:source unirule:MF_03185 ;
rdf:subject ?pfs103 ;
rdf:predicate up:annotation ;
rdf:object ?annotation104 .
_:869113 a rdf:Statement ;
up:attribution _:869054 ;
rdf:subject ?pfs103 ;
rdf:predicate up:annotation ;
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_:869114 a rdf:Statement ;
up:source unirule:MF_03185 ;
rdf:subject ?pfs111 ;
rdf:predicate up:annotation ;
rdf:object ?annotation112 .
_:869115 a rdf:Statement ;
up:attribution _:869055 ;
rdf:subject ?pfs111 ;
rdf:predicate up:annotation ;
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_:869116 a rdf:Statement ;
up:source unirule:MF_03185 ;
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rdf:predicate up:annotation ;
rdf:object ?annotation120 .
_:869117 a rdf:Statement ;
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rdf:subject ?pfs135 ;
rdf:predicate up:annotation ;
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_:869122 a rdf:Statement ;
up:source unirule:MF_03185 ;
rdf:subject ?pfs141 ;
rdf:predicate up:annotation ;
rdf:object ?annotation142 .
_:869123 a rdf:Statement ;
up:attribution _:869059 ;
rdf:subject ?pfs141 ;
rdf:predicate up:annotation ;
rdf:object ?annotation142 .
_:869124 a rdf:Statement ;
up:source unirule:MF_03185 ;
rdf:subject ?pfs148 ;
rdf:predicate up:annotation ;
rdf:object ?annotation149 .
_:869125 a rdf:Statement ;
up:attribution _:869060 ;
rdf:subject ?pfs148 ;
rdf:predicate up:annotation ;
rdf:object ?annotation149 .
_:869126 a rdf:Statement ;
up:source unirule:MF_03185 ;
rdf:subject ?pfs156 ;
rdf:predicate up:annotation ;
rdf:object ?annotation157 .
_:869127 a rdf:Statement ;
up:attribution _:869061 ;
rdf:subject ?pfs156 ;
rdf:predicate up:annotation ;
rdf:object ?annotation157 .
_:869128 a rdf:Statement ;
up:source unirule:MF_03185 ;
rdf:subject ?pfs163 ;
rdf:predicate up:annotation ;
rdf:object ?annotation164 .
_:869129 a rdf:Statement ;
up:attribution _:869062 ;
rdf:subject ?pfs163 ;
rdf:predicate up:annotation ;
rdf:object ?annotation164 .
_:869130 a rdf:Statement ;
up:source unirule:MF_03185 ;
rdf:subject ?pfs170 ;
rdf:predicate up:annotation ;
rdf:object ?annotation171 .
_:869131 a rdf:Statement ;
up:attribution _:869063 ;
rdf:subject ?pfs170 ;
rdf:predicate up:annotation ;
rdf:object ?annotation171 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_03185
#Rule MF_03185 Created by:? on:2014-05-16 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01980 .
?thisOrganism rdfs:subClassOf+ taxon:2759 .
BIND(URI(CONCAT(STR(?this), '#MF_03185a0')) AS ?annotation0) .
BIND(URI(CONCAT(STR(?this), '#MF_03185a1')) AS ?annotation1) .
BIND(URI(CONCAT(STR(?this), '#MF_03185a3')) AS ?annotation3) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch181 faldo:location ?templateMotifSequenceMatchRegionC4LZC2182 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationC4LZC2184 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarC4LZC2MF_01980177 .
?templateMotifSequenceMatchRegionC4LZC2182 faldo:begin ?templateMotifSequenceMatchBeginC4LZC2183 .
?templateMotifSequenceMatchBeginC4LZC2183 faldo:position ?templateMotifSequenceMatchBeginPositionC4LZC2178 ;
faldo:reference isoform:C4LZC2-1 .
?templateMotifSequenceProfileAlignmentOperationC4LZC2184 edam:has_input signature:MF_01980 ;
rdf:type edam:operation_0300 .
?targetMotifMatch185 faldo:location ?targetMotifMatchRegionMatch186 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01980188 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarC4LZC2MF_01980179 .
?targetMotifMatchRegionMatch186 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01980187 .
?targetMotifMatchRegionMatchBeginMF_01980187 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01980180 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01980188 edam:has_input signature:MF_01980 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFT_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarC4LZC2MF_01980177, 1, (STRLEN(?templateMotifCigarC4LZC2MF_01980177) - STRLEN(REPLACE(?templateMotifCigarC4LZC2MF_01980177, CONCAT('^(?:-*[^-]){', STR(((175 - ?templateMotifSequenceMatchBeginPositionC4LZC2178) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1189) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarC4LZC2MF_01980179, 1, (STRLEN(?targetMotifMatchCigarC4LZC2MF_01980179) - STRLEN(REPLACE(?targetMotifMatchCigarC4LZC2MF_01980179, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1189), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarC4LZC2MF_01980179, 1, (STRLEN(?targetMotifMatchCigarC4LZC2MF_01980179) - STRLEN(REPLACE(?targetMotifMatchCigarC4LZC2MF_01980179, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1189), '}'), '')))), '[^-]', ''))) AS ?step2190) .
BIND(((?step2190 + ?targetMotifMatchRegionMatchBeginPositionMF_01980180) - 1) AS ?thisPositionOn29) .
BIND(?thisPositionOn29 AS ?thisPositionOn30) .
BIND(?this AS ?pfs1t191) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb27) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse28) .
FILTER (REGEX('[DN]', SUBSTR(?thisSequenceValue, ?thisPositionOn29, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_03185a26')) AS ?annotation26) .
BIND(?this AS ?pfs25) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch196 faldo:location ?templateMotifSequenceMatchRegionC4LZC2197 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationC4LZC2199 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarC4LZC2MF_01980192 .
?templateMotifSequenceMatchRegionC4LZC2197 faldo:begin ?templateMotifSequenceMatchBeginC4LZC2198 .
?templateMotifSequenceMatchBeginC4LZC2198 faldo:position ?templateMotifSequenceMatchBeginPositionC4LZC2193 ;
faldo:reference isoform:C4LZC2-1 .
?templateMotifSequenceProfileAlignmentOperationC4LZC2199 edam:has_input signature:MF_01980 ;
rdf:type edam:operation_0300 .
?targetMotifMatch200 faldo:location ?targetMotifMatchRegionMatch201 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01980203 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarC4LZC2MF_01980194 .
?targetMotifMatchRegionMatch201 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01980202 .
?targetMotifMatchRegionMatchBeginMF_01980202 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01980195 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01980203 edam:has_input signature:MF_01980 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFT_2) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarC4LZC2MF_01980192, 1, (STRLEN(?templateMotifCigarC4LZC2MF_01980192) - STRLEN(REPLACE(?templateMotifCigarC4LZC2MF_01980192, CONCAT('^(?:-*[^-]){', STR(((175 - ?templateMotifSequenceMatchBeginPositionC4LZC2193) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1204) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarC4LZC2MF_01980194, 1, (STRLEN(?targetMotifMatchCigarC4LZC2MF_01980194) - STRLEN(REPLACE(?targetMotifMatchCigarC4LZC2MF_01980194, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1204), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarC4LZC2MF_01980194, 1, (STRLEN(?targetMotifMatchCigarC4LZC2MF_01980194) - STRLEN(REPLACE(?targetMotifMatchCigarC4LZC2MF_01980194, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1204), '}'), '')))), '[^-]', ''))) AS ?step2205) .
BIND(((?step2205 + ?targetMotifMatchRegionMatchBeginPositionMF_01980195) - 1) AS ?thisPositionOn35) .
BIND(?thisPositionOn35 AS ?thisPositionOn36) .
BIND(?this AS ?pfs2t206) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfsb33) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfse34) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn35, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_03185a32')) AS ?annotation32) .
BIND(?this AS ?pfs31) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch211 faldo:location ?templateMotifSequenceMatchRegionC4LZC2212 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationC4LZC2214 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarC4LZC2MF_01980207 .
?templateMotifSequenceMatchRegionC4LZC2212 faldo:begin ?templateMotifSequenceMatchBeginC4LZC2213 .
?templateMotifSequenceMatchBeginC4LZC2213 faldo:position ?templateMotifSequenceMatchBeginPositionC4LZC2208 ;
faldo:reference isoform:C4LZC2-1 .
?templateMotifSequenceProfileAlignmentOperationC4LZC2214 edam:has_input signature:MF_01980 ;
rdf:type edam:operation_0300 .
?targetMotifMatch215 faldo:location ?targetMotifMatchRegionMatch216 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01980218 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarC4LZC2MF_01980209 .
?targetMotifMatchRegionMatch216 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01980217 .
?targetMotifMatchRegionMatchBeginMF_01980217 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01980210 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01980218 edam:has_input signature:MF_01980 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarC4LZC2MF_01980207, 1, (STRLEN(?templateMotifCigarC4LZC2MF_01980207) - STRLEN(REPLACE(?templateMotifCigarC4LZC2MF_01980207, CONCAT('^(?:-*[^-]){', STR(((80 - ?templateMotifSequenceMatchBeginPositionC4LZC2208) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1219) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarC4LZC2MF_01980209, 1, (STRLEN(?targetMotifMatchCigarC4LZC2MF_01980209) - STRLEN(REPLACE(?targetMotifMatchCigarC4LZC2MF_01980209, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1219), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarC4LZC2MF_01980209, 1, (STRLEN(?targetMotifMatchCigarC4LZC2MF_01980209) - STRLEN(REPLACE(?targetMotifMatchCigarC4LZC2MF_01980209, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1219), '}'), '')))), '[^-]', ''))) AS ?step2220) .
BIND(((?step2220 + ?targetMotifMatchRegionMatchBeginPositionMF_01980210) - 1) AS ?thisPositionOn42) .
BIND(?thisPositionOn42 AS ?thisPositionOn43) .
BIND(?this AS ?pfs3t221) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb39) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse40) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn42, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_03185a38')) AS ?annotation38) .
BIND(?this AS ?pfs37) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch226 faldo:location ?templateMotifSequenceMatchRegionC4LZC2227 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationC4LZC2229 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarC4LZC2MF_01980222 .
?templateMotifSequenceMatchRegionC4LZC2227 faldo:begin ?templateMotifSequenceMatchBeginC4LZC2228 .
?templateMotifSequenceMatchBeginC4LZC2228 faldo:position ?templateMotifSequenceMatchBeginPositionC4LZC2223 ;
faldo:reference isoform:C4LZC2-1 .
?templateMotifSequenceProfileAlignmentOperationC4LZC2229 edam:has_input signature:MF_01980 ;
rdf:type edam:operation_0300 .
?targetMotifMatch230 faldo:location ?targetMotifMatchRegionMatch231 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01980233 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarC4LZC2MF_01980224 .
?targetMotifMatchRegionMatch231 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01980232 .
?targetMotifMatchRegionMatchBeginMF_01980232 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01980225 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01980233 edam:has_input signature:MF_01980 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarC4LZC2MF_01980222, 1, (STRLEN(?templateMotifCigarC4LZC2MF_01980222) - STRLEN(REPLACE(?templateMotifCigarC4LZC2MF_01980222, CONCAT('^(?:-*[^-]){', STR(((201 - ?templateMotifSequenceMatchBeginPositionC4LZC2223) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1234) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarC4LZC2MF_01980224, 1, (STRLEN(?targetMotifMatchCigarC4LZC2MF_01980224) - STRLEN(REPLACE(?targetMotifMatchCigarC4LZC2MF_01980224, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1234), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarC4LZC2MF_01980224, 1, (STRLEN(?targetMotifMatchCigarC4LZC2MF_01980224) - STRLEN(REPLACE(?targetMotifMatchCigarC4LZC2MF_01980224, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1234), '}'), '')))), '[^-]', ''))) AS ?step2235) .
BIND(((?step2235 + ?targetMotifMatchRegionMatchBeginPositionMF_01980225) - 1) AS ?thisPositionOn48) .
BIND(?thisPositionOn48 AS ?thisPositionOn49) .
BIND(?this AS ?pfs3t236) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfsb46) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfse47) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn48, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_03185a45')) AS ?annotation45) .
BIND(?this AS ?pfs44) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch241 faldo:location ?templateMotifSequenceMatchRegionC4LZC2242 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationC4LZC2244 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarC4LZC2MF_01980237 .
?templateMotifSequenceMatchRegionC4LZC2242 faldo:begin ?templateMotifSequenceMatchBeginC4LZC2243 .
?templateMotifSequenceMatchBeginC4LZC2243 faldo:position ?templateMotifSequenceMatchBeginPositionC4LZC2238 ;
faldo:reference isoform:C4LZC2-1 .
?templateMotifSequenceProfileAlignmentOperationC4LZC2244 edam:has_input signature:MF_01980 ;
rdf:type edam:operation_0300 .
?targetMotifMatch245 faldo:location ?targetMotifMatchRegionMatch246 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01980248 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarC4LZC2MF_01980239 .
?targetMotifMatchRegionMatch246 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01980247 .
?targetMotifMatchRegionMatchBeginMF_01980247 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01980240 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01980248 edam:has_input signature:MF_01980 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarC4LZC2MF_01980237, 1, (STRLEN(?templateMotifCigarC4LZC2MF_01980237) - STRLEN(REPLACE(?templateMotifCigarC4LZC2MF_01980237, CONCAT('^(?:-*[^-]){', STR(((202 - ?templateMotifSequenceMatchBeginPositionC4LZC2238) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1249) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarC4LZC2MF_01980239, 1, (STRLEN(?targetMotifMatchCigarC4LZC2MF_01980239) - STRLEN(REPLACE(?targetMotifMatchCigarC4LZC2MF_01980239, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1249), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarC4LZC2MF_01980239, 1, (STRLEN(?targetMotifMatchCigarC4LZC2MF_01980239) - STRLEN(REPLACE(?targetMotifMatchCigarC4LZC2MF_01980239, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1249), '}'), '')))), '[^-]', ''))) AS ?step2250) .
BIND(((?step2250 + ?targetMotifMatchRegionMatchBeginPositionMF_01980240) - 1) AS ?thisPositionOn56) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarC4LZC2MF_01980237, 1, (STRLEN(?templateMotifCigarC4LZC2MF_01980237) - STRLEN(REPLACE(?templateMotifCigarC4LZC2MF_01980237, CONCAT('^(?:-*[^-]){', STR(((204 - ?templateMotifSequenceMatchBeginPositionC4LZC2238) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1251) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarC4LZC2MF_01980239, 1, (STRLEN(?targetMotifMatchCigarC4LZC2MF_01980239) - STRLEN(REPLACE(?targetMotifMatchCigarC4LZC2MF_01980239, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1251), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarC4LZC2MF_01980239, 1, (STRLEN(?targetMotifMatchCigarC4LZC2MF_01980239) - STRLEN(REPLACE(?targetMotifMatchCigarC4LZC2MF_01980239, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1251), '}'), '')))), '[^-]', ''))) AS ?step2252) .
BIND(((?step2252 + ?targetMotifMatchRegionMatchBeginPositionMF_01980240) - 1) AS ?thisPositionOn57) .
BIND(?this AS ?pfs3t253) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfsb52) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfse53) .
FILTER (REGEX('T[ARNDCQEGHILKMFPSTWYVBZJUOX]D', SUBSTR(?thisSequenceValue, ?thisPositionOn56, (?thisPositionOn57 - ?thisPositionOn56)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03185a51')) AS ?annotation51) .
BIND(?this AS ?pfs50) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch258 faldo:location ?templateMotifSequenceMatchRegionC4LZC2259 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationC4LZC2261 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarC4LZC2MF_01980254 .
?templateMotifSequenceMatchRegionC4LZC2259 faldo:begin ?templateMotifSequenceMatchBeginC4LZC2260 .
?templateMotifSequenceMatchBeginC4LZC2260 faldo:position ?templateMotifSequenceMatchBeginPositionC4LZC2255 ;
faldo:reference isoform:C4LZC2-1 .
?templateMotifSequenceProfileAlignmentOperationC4LZC2261 edam:has_input signature:MF_01980 ;
rdf:type edam:operation_0300 .
?targetMotifMatch262 faldo:location ?targetMotifMatchRegionMatch263 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01980265 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarC4LZC2MF_01980256 .
?targetMotifMatchRegionMatch263 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01980264 .
?targetMotifMatchRegionMatchBeginMF_01980264 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01980257 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01980265 edam:has_input signature:MF_01980 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarC4LZC2MF_01980254, 1, (STRLEN(?templateMotifCigarC4LZC2MF_01980254) - STRLEN(REPLACE(?templateMotifCigarC4LZC2MF_01980254, CONCAT('^(?:-*[^-]){', STR(((241 - ?templateMotifSequenceMatchBeginPositionC4LZC2255) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1266) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarC4LZC2MF_01980256, 1, (STRLEN(?targetMotifMatchCigarC4LZC2MF_01980256) - STRLEN(REPLACE(?targetMotifMatchCigarC4LZC2MF_01980256, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1266), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarC4LZC2MF_01980256, 1, (STRLEN(?targetMotifMatchCigarC4LZC2MF_01980256) - STRLEN(REPLACE(?targetMotifMatchCigarC4LZC2MF_01980256, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1266), '}'), '')))), '[^-]', ''))) AS ?step2267) .
BIND(((?step2267 + ?targetMotifMatchRegionMatchBeginPositionMF_01980257) - 1) AS ?thisPositionOn64) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarC4LZC2MF_01980254, 1, (STRLEN(?templateMotifCigarC4LZC2MF_01980254) - STRLEN(REPLACE(?templateMotifCigarC4LZC2MF_01980254, CONCAT('^(?:-*[^-]){', STR(((242 - ?templateMotifSequenceMatchBeginPositionC4LZC2255) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1268) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarC4LZC2MF_01980256, 1, (STRLEN(?targetMotifMatchCigarC4LZC2MF_01980256) - STRLEN(REPLACE(?targetMotifMatchCigarC4LZC2MF_01980256, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1268), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarC4LZC2MF_01980256, 1, (STRLEN(?targetMotifMatchCigarC4LZC2MF_01980256) - STRLEN(REPLACE(?targetMotifMatchCigarC4LZC2MF_01980256, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1268), '}'), '')))), '[^-]', ''))) AS ?step2269) .
BIND(((?step2269 + ?targetMotifMatchRegionMatchBeginPositionMF_01980257) - 1) AS ?thisPositionOn65) .
BIND(?this AS ?pfs3t270) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfsb60) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn65))) AS ?pfse61) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn64, (?thisPositionOn65 - ?thisPositionOn64)) = 'KY')) .
BIND(URI(CONCAT(STR(?this), '#MF_03185a59')) AS ?annotation59) .
BIND(?this AS ?pfs58) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch275 faldo:location ?templateMotifSequenceMatchRegionC4LZC2276 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationC4LZC2278 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarC4LZC2MF_01980271 .
?templateMotifSequenceMatchRegionC4LZC2276 faldo:begin ?templateMotifSequenceMatchBeginC4LZC2277 .
?templateMotifSequenceMatchBeginC4LZC2277 faldo:position ?templateMotifSequenceMatchBeginPositionC4LZC2272 ;
faldo:reference isoform:C4LZC2-1 .
?templateMotifSequenceProfileAlignmentOperationC4LZC2278 edam:has_input signature:MF_01980 ;
rdf:type edam:operation_0300 .
?targetMotifMatch279 faldo:location ?targetMotifMatchRegionMatch280 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01980282 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarC4LZC2MF_01980273 .
?targetMotifMatchRegionMatch280 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01980281 .
?targetMotifMatchRegionMatchBeginMF_01980281 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01980274 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01980282 edam:has_input signature:MF_01980 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarC4LZC2MF_01980271, 1, (STRLEN(?templateMotifCigarC4LZC2MF_01980271) - STRLEN(REPLACE(?templateMotifCigarC4LZC2MF_01980271, CONCAT('^(?:-*[^-]){', STR(((249 - ?templateMotifSequenceMatchBeginPositionC4LZC2272) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1283) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarC4LZC2MF_01980273, 1, (STRLEN(?targetMotifMatchCigarC4LZC2MF_01980273) - STRLEN(REPLACE(?targetMotifMatchCigarC4LZC2MF_01980273, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1283), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarC4LZC2MF_01980273, 1, (STRLEN(?targetMotifMatchCigarC4LZC2MF_01980273) - STRLEN(REPLACE(?targetMotifMatchCigarC4LZC2MF_01980273, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1283), '}'), '')))), '[^-]', ''))) AS ?step2284) .
BIND(((?step2284 + ?targetMotifMatchRegionMatchBeginPositionMF_01980274) - 1) AS ?thisPositionOn72) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarC4LZC2MF_01980271, 1, (STRLEN(?templateMotifCigarC4LZC2MF_01980271) - STRLEN(REPLACE(?templateMotifCigarC4LZC2MF_01980271, CONCAT('^(?:-*[^-]){', STR(((251 - ?templateMotifSequenceMatchBeginPositionC4LZC2272) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1285) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarC4LZC2MF_01980273, 1, (STRLEN(?targetMotifMatchCigarC4LZC2MF_01980273) - STRLEN(REPLACE(?targetMotifMatchCigarC4LZC2MF_01980273, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1285), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarC4LZC2MF_01980273, 1, (STRLEN(?targetMotifMatchCigarC4LZC2MF_01980273) - STRLEN(REPLACE(?targetMotifMatchCigarC4LZC2MF_01980273, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1285), '}'), '')))), '[^-]', ''))) AS ?step2286) .
BIND(((?step2286 + ?targetMotifMatchRegionMatchBeginPositionMF_01980274) - 1) AS ?thisPositionOn73) .
BIND(?this AS ?pfs3t287) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn72))) AS ?pfsb68) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfse69) .
FILTER (REGEX('MG[RH]', SUBSTR(?thisSequenceValue, ?thisPositionOn72, (?thisPositionOn73 - ?thisPositionOn72)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03185a67')) AS ?annotation67) .
BIND(?this AS ?pfs66) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch292 faldo:location ?templateMotifSequenceMatchRegionC4LZC2293 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationC4LZC2295 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarC4LZC2MF_01980288 .
?templateMotifSequenceMatchRegionC4LZC2293 faldo:begin ?templateMotifSequenceMatchBeginC4LZC2294 .
?templateMotifSequenceMatchBeginC4LZC2294 faldo:position ?templateMotifSequenceMatchBeginPositionC4LZC2289 ;
faldo:reference isoform:C4LZC2-1 .
?templateMotifSequenceProfileAlignmentOperationC4LZC2295 edam:has_input signature:MF_01980 ;
rdf:type edam:operation_0300 .
?targetMotifMatch296 faldo:location ?targetMotifMatchRegionMatch297 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01980299 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarC4LZC2MF_01980290 .
?targetMotifMatchRegionMatch297 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01980298 .
?targetMotifMatchRegionMatchBeginMF_01980298 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01980291 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01980299 edam:has_input signature:MF_01980 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarC4LZC2MF_01980288, 1, (STRLEN(?templateMotifCigarC4LZC2MF_01980288) - STRLEN(REPLACE(?templateMotifCigarC4LZC2MF_01980288, CONCAT('^(?:-*[^-]){', STR(((420 - ?templateMotifSequenceMatchBeginPositionC4LZC2289) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1300) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarC4LZC2MF_01980290, 1, (STRLEN(?targetMotifMatchCigarC4LZC2MF_01980290) - STRLEN(REPLACE(?targetMotifMatchCigarC4LZC2MF_01980290, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1300), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarC4LZC2MF_01980290, 1, (STRLEN(?targetMotifMatchCigarC4LZC2MF_01980290) - STRLEN(REPLACE(?targetMotifMatchCigarC4LZC2MF_01980290, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1300), '}'), '')))), '[^-]', ''))) AS ?step2301) .
BIND(((?step2301 + ?targetMotifMatchRegionMatchBeginPositionMF_01980291) - 1) AS ?thisPositionOn80) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarC4LZC2MF_01980288, 1, (STRLEN(?templateMotifCigarC4LZC2MF_01980288) - STRLEN(REPLACE(?templateMotifCigarC4LZC2MF_01980288, CONCAT('^(?:-*[^-]){', STR(((423 - ?templateMotifSequenceMatchBeginPositionC4LZC2289) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1302) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarC4LZC2MF_01980290, 1, (STRLEN(?targetMotifMatchCigarC4LZC2MF_01980290) - STRLEN(REPLACE(?targetMotifMatchCigarC4LZC2MF_01980290, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1302), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarC4LZC2MF_01980290, 1, (STRLEN(?targetMotifMatchCigarC4LZC2MF_01980290) - STRLEN(REPLACE(?targetMotifMatchCigarC4LZC2MF_01980290, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1302), '}'), '')))), '[^-]', ''))) AS ?step2303) .
BIND(((?step2303 + ?targetMotifMatchRegionMatchBeginPositionMF_01980291) - 1) AS ?thisPositionOn81) .
BIND(?this AS ?pfs3t304) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn80))) AS ?pfsb76) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn81))) AS ?pfse77) .
FILTER (REGEX('[HY][ARNDCQEGHILKMFPSTWYVBZJUOX]{2)R', SUBSTR(?thisSequenceValue, ?thisPositionOn80, (?thisPositionOn81 - ?thisPositionOn80)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03185a75')) AS ?annotation75) .
BIND(?this AS ?pfs74) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch309 faldo:location ?templateMotifSequenceMatchRegionC4LZC2310 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationC4LZC2312 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarC4LZC2MF_01980305 .
?templateMotifSequenceMatchRegionC4LZC2310 faldo:begin ?templateMotifSequenceMatchBeginC4LZC2311 .
?templateMotifSequenceMatchBeginC4LZC2311 faldo:position ?templateMotifSequenceMatchBeginPositionC4LZC2306 ;
faldo:reference isoform:C4LZC2-1 .
?templateMotifSequenceProfileAlignmentOperationC4LZC2312 edam:has_input signature:MF_01980 ;
rdf:type edam:operation_0300 .
?targetMotifMatch313 faldo:location ?targetMotifMatchRegionMatch314 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01980316 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarC4LZC2MF_01980307 .
?targetMotifMatchRegionMatch314 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01980315 .
?targetMotifMatchRegionMatchBeginMF_01980315 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01980308 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01980316 edam:has_input signature:MF_01980 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarC4LZC2MF_01980305, 1, (STRLEN(?templateMotifCigarC4LZC2MF_01980305) - STRLEN(REPLACE(?templateMotifCigarC4LZC2MF_01980305, CONCAT('^(?:-*[^-]){', STR(((204 - ?templateMotifSequenceMatchBeginPositionC4LZC2306) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1317) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarC4LZC2MF_01980307, 1, (STRLEN(?targetMotifMatchCigarC4LZC2MF_01980307) - STRLEN(REPLACE(?targetMotifMatchCigarC4LZC2MF_01980307, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1317), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarC4LZC2MF_01980307, 1, (STRLEN(?targetMotifMatchCigarC4LZC2MF_01980307) - STRLEN(REPLACE(?targetMotifMatchCigarC4LZC2MF_01980307, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1317), '}'), '')))), '[^-]', ''))) AS ?step2318) .
BIND(((?step2318 + ?targetMotifMatchRegionMatchBeginPositionMF_01980308) - 1) AS ?thisPositionOn86) .
BIND(?thisPositionOn86 AS ?thisPositionOn87) .
BIND(?this AS ?pfs3t319) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn86))) AS ?pfsb84) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn87))) AS ?pfse85) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn86, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_03185a83')) AS ?annotation83) .
BIND(?this AS ?pfs82) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch324 faldo:location ?templateMotifSequenceMatchRegionC4LZC2325 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationC4LZC2327 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarC4LZC2MF_01980320 .
?templateMotifSequenceMatchRegionC4LZC2325 faldo:begin ?templateMotifSequenceMatchBeginC4LZC2326 .
?templateMotifSequenceMatchBeginC4LZC2326 faldo:position ?templateMotifSequenceMatchBeginPositionC4LZC2321 ;
faldo:reference isoform:C4LZC2-1 .
?templateMotifSequenceProfileAlignmentOperationC4LZC2327 edam:has_input signature:MF_01980 ;
rdf:type edam:operation_0300 .
?targetMotifMatch328 faldo:location ?targetMotifMatchRegionMatch329 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01980331 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarC4LZC2MF_01980322 .
?targetMotifMatchRegionMatch329 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01980330 .
?targetMotifMatchRegionMatchBeginMF_01980330 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01980323 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01980331 edam:has_input signature:MF_01980 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarC4LZC2MF_01980320, 1, (STRLEN(?templateMotifCigarC4LZC2MF_01980320) - STRLEN(REPLACE(?templateMotifCigarC4LZC2MF_01980320, CONCAT('^(?:-*[^-]){', STR(((174 - ?templateMotifSequenceMatchBeginPositionC4LZC2321) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1332) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarC4LZC2MF_01980322, 1, (STRLEN(?targetMotifMatchCigarC4LZC2MF_01980322) - STRLEN(REPLACE(?targetMotifMatchCigarC4LZC2MF_01980322, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1332), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarC4LZC2MF_01980322, 1, (STRLEN(?targetMotifMatchCigarC4LZC2MF_01980322) - STRLEN(REPLACE(?targetMotifMatchCigarC4LZC2MF_01980322, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1332), '}'), '')))), '[^-]', ''))) AS ?step2333) .
BIND(((?step2333 + ?targetMotifMatchRegionMatchBeginPositionMF_01980323) - 1) AS ?thisPositionOn93) .
BIND(?thisPositionOn93 AS ?thisPositionOn94) .
BIND(?this AS ?pfs3t334) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn93))) AS ?pfsb90) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn94))) AS ?pfse91) .
FILTER (REGEX('[DE]', SUBSTR(?thisSequenceValue, ?thisPositionOn93, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_03185a89')) AS ?annotation89) .
BIND(?this AS ?pfs88) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch339 faldo:location ?templateMotifSequenceMatchRegionC4LZC2340 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationC4LZC2342 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarC4LZC2MF_01980335 .
?templateMotifSequenceMatchRegionC4LZC2340 faldo:begin ?templateMotifSequenceMatchBeginC4LZC2341 .
?templateMotifSequenceMatchBeginC4LZC2341 faldo:position ?templateMotifSequenceMatchBeginPositionC4LZC2336 ;
faldo:reference isoform:C4LZC2-1 .
?templateMotifSequenceProfileAlignmentOperationC4LZC2342 edam:has_input signature:MF_01980 ;
rdf:type edam:operation_0300 .
?targetMotifMatch343 faldo:location ?targetMotifMatchRegionMatch344 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01980346 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarC4LZC2MF_01980337 .
?targetMotifMatchRegionMatch344 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01980345 .
?targetMotifMatchRegionMatchBeginMF_01980345 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01980338 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01980346 edam:has_input signature:MF_01980 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarC4LZC2MF_01980335, 1, (STRLEN(?templateMotifCigarC4LZC2MF_01980335) - STRLEN(REPLACE(?templateMotifCigarC4LZC2MF_01980335, CONCAT('^(?:-*[^-]){', STR(((310 - ?templateMotifSequenceMatchBeginPositionC4LZC2336) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1347) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarC4LZC2MF_01980337, 1, (STRLEN(?targetMotifMatchCigarC4LZC2MF_01980337) - STRLEN(REPLACE(?targetMotifMatchCigarC4LZC2MF_01980337, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1347), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarC4LZC2MF_01980337, 1, (STRLEN(?targetMotifMatchCigarC4LZC2MF_01980337) - STRLEN(REPLACE(?targetMotifMatchCigarC4LZC2MF_01980337, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1347), '}'), '')))), '[^-]', ''))) AS ?step2348) .
BIND(((?step2348 + ?targetMotifMatchRegionMatchBeginPositionMF_01980338) - 1) AS ?thisPositionOn101) .
BIND(?thisPositionOn101 AS ?thisPositionOn102) .
BIND(?this AS ?pfs3t349) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn101))) AS ?pfsb97) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn102))) AS ?pfse98) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn101, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_03185a96')) AS ?annotation96) .
BIND(?this AS ?pfs95) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch354 faldo:location ?templateMotifSequenceMatchRegionC4LZC2355 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationC4LZC2357 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarC4LZC2MF_01980350 .
?templateMotifSequenceMatchRegionC4LZC2355 faldo:begin ?templateMotifSequenceMatchBeginC4LZC2356 .
?templateMotifSequenceMatchBeginC4LZC2356 faldo:position ?templateMotifSequenceMatchBeginPositionC4LZC2351 ;
faldo:reference isoform:C4LZC2-1 .
?templateMotifSequenceProfileAlignmentOperationC4LZC2357 edam:has_input signature:MF_01980 ;
rdf:type edam:operation_0300 .
?targetMotifMatch358 faldo:location ?targetMotifMatchRegionMatch359 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01980361 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarC4LZC2MF_01980352 .
?targetMotifMatchRegionMatch359 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01980360 .
?targetMotifMatchRegionMatchBeginMF_01980360 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01980353 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01980361 edam:has_input signature:MF_01980 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarC4LZC2MF_01980350, 1, (STRLEN(?templateMotifCigarC4LZC2MF_01980350) - STRLEN(REPLACE(?templateMotifCigarC4LZC2MF_01980350, CONCAT('^(?:-*[^-]){', STR(((202 - ?templateMotifSequenceMatchBeginPositionC4LZC2351) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1362) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarC4LZC2MF_01980352, 1, (STRLEN(?targetMotifMatchCigarC4LZC2MF_01980352) - STRLEN(REPLACE(?targetMotifMatchCigarC4LZC2MF_01980352, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1362), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarC4LZC2MF_01980352, 1, (STRLEN(?targetMotifMatchCigarC4LZC2MF_01980352) - STRLEN(REPLACE(?targetMotifMatchCigarC4LZC2MF_01980352, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1362), '}'), '')))), '[^-]', ''))) AS ?step2363) .
BIND(((?step2363 + ?targetMotifMatchRegionMatchBeginPositionMF_01980353) - 1) AS ?thisPositionOn109) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarC4LZC2MF_01980350, 1, (STRLEN(?templateMotifCigarC4LZC2MF_01980350) - STRLEN(REPLACE(?templateMotifCigarC4LZC2MF_01980350, CONCAT('^(?:-*[^-]){', STR(((204 - ?templateMotifSequenceMatchBeginPositionC4LZC2351) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1364) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarC4LZC2MF_01980352, 1, (STRLEN(?targetMotifMatchCigarC4LZC2MF_01980352) - STRLEN(REPLACE(?targetMotifMatchCigarC4LZC2MF_01980352, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1364), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarC4LZC2MF_01980352, 1, (STRLEN(?targetMotifMatchCigarC4LZC2MF_01980352) - STRLEN(REPLACE(?targetMotifMatchCigarC4LZC2MF_01980352, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1364), '}'), '')))), '[^-]', ''))) AS ?step2365) .
BIND(((?step2365 + ?targetMotifMatchRegionMatchBeginPositionMF_01980353) - 1) AS ?thisPositionOn110) .
BIND(?this AS ?pfs4t366) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn109))) AS ?pfsb105) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn110))) AS ?pfse106) .
FILTER (REGEX('T[ARNDCQEGHILKMFPSTWYVBZJUOX]D', SUBSTR(?thisSequenceValue, ?thisPositionOn109, (?thisPositionOn110 - ?thisPositionOn109)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03185a104')) AS ?annotation104) .
BIND(?this AS ?pfs103) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch371 faldo:location ?templateMotifSequenceMatchRegionC4LZC2372 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationC4LZC2374 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarC4LZC2MF_01980367 .
?templateMotifSequenceMatchRegionC4LZC2372 faldo:begin ?templateMotifSequenceMatchBeginC4LZC2373 .
?templateMotifSequenceMatchBeginC4LZC2373 faldo:position ?templateMotifSequenceMatchBeginPositionC4LZC2368 ;
faldo:reference isoform:C4LZC2-1 .
?templateMotifSequenceProfileAlignmentOperationC4LZC2374 edam:has_input signature:MF_01980 ;
rdf:type edam:operation_0300 .
?targetMotifMatch375 faldo:location ?targetMotifMatchRegionMatch376 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01980378 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarC4LZC2MF_01980369 .
?targetMotifMatchRegionMatch376 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01980377 .
?targetMotifMatchRegionMatchBeginMF_01980377 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01980370 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01980378 edam:has_input signature:MF_01980 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarC4LZC2MF_01980367, 1, (STRLEN(?templateMotifCigarC4LZC2MF_01980367) - STRLEN(REPLACE(?templateMotifCigarC4LZC2MF_01980367, CONCAT('^(?:-*[^-]){', STR(((241 - ?templateMotifSequenceMatchBeginPositionC4LZC2368) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1379) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarC4LZC2MF_01980369, 1, (STRLEN(?targetMotifMatchCigarC4LZC2MF_01980369) - STRLEN(REPLACE(?targetMotifMatchCigarC4LZC2MF_01980369, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1379), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarC4LZC2MF_01980369, 1, (STRLEN(?targetMotifMatchCigarC4LZC2MF_01980369) - STRLEN(REPLACE(?targetMotifMatchCigarC4LZC2MF_01980369, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1379), '}'), '')))), '[^-]', ''))) AS ?step2380) .
BIND(((?step2380 + ?targetMotifMatchRegionMatchBeginPositionMF_01980370) - 1) AS ?thisPositionOn117) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarC4LZC2MF_01980367, 1, (STRLEN(?templateMotifCigarC4LZC2MF_01980367) - STRLEN(REPLACE(?templateMotifCigarC4LZC2MF_01980367, CONCAT('^(?:-*[^-]){', STR(((242 - ?templateMotifSequenceMatchBeginPositionC4LZC2368) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1381) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarC4LZC2MF_01980369, 1, (STRLEN(?targetMotifMatchCigarC4LZC2MF_01980369) - STRLEN(REPLACE(?targetMotifMatchCigarC4LZC2MF_01980369, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1381), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarC4LZC2MF_01980369, 1, (STRLEN(?targetMotifMatchCigarC4LZC2MF_01980369) - STRLEN(REPLACE(?targetMotifMatchCigarC4LZC2MF_01980369, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1381), '}'), '')))), '[^-]', ''))) AS ?step2382) .
BIND(((?step2382 + ?targetMotifMatchRegionMatchBeginPositionMF_01980370) - 1) AS ?thisPositionOn118) .
BIND(?this AS ?pfs4t383) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn117))) AS ?pfsb113) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn118))) AS ?pfse114) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn117, (?thisPositionOn118 - ?thisPositionOn117)) = 'KY')) .
BIND(URI(CONCAT(STR(?this), '#MF_03185a112')) AS ?annotation112) .
BIND(?this AS ?pfs111) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch388 faldo:location ?templateMotifSequenceMatchRegionC4LZC2389 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationC4LZC2391 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarC4LZC2MF_01980384 .
?templateMotifSequenceMatchRegionC4LZC2389 faldo:begin ?templateMotifSequenceMatchBeginC4LZC2390 .
?templateMotifSequenceMatchBeginC4LZC2390 faldo:position ?templateMotifSequenceMatchBeginPositionC4LZC2385 ;
faldo:reference isoform:C4LZC2-1 .
?templateMotifSequenceProfileAlignmentOperationC4LZC2391 edam:has_input signature:MF_01980 ;
rdf:type edam:operation_0300 .
?targetMotifMatch392 faldo:location ?targetMotifMatchRegionMatch393 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01980395 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarC4LZC2MF_01980386 .
?targetMotifMatchRegionMatch393 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01980394 .
?targetMotifMatchRegionMatchBeginMF_01980394 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01980387 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01980395 edam:has_input signature:MF_01980 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarC4LZC2MF_01980384, 1, (STRLEN(?templateMotifCigarC4LZC2MF_01980384) - STRLEN(REPLACE(?templateMotifCigarC4LZC2MF_01980384, CONCAT('^(?:-*[^-]){', STR(((249 - ?templateMotifSequenceMatchBeginPositionC4LZC2385) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1396) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarC4LZC2MF_01980386, 1, (STRLEN(?targetMotifMatchCigarC4LZC2MF_01980386) - STRLEN(REPLACE(?targetMotifMatchCigarC4LZC2MF_01980386, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1396), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarC4LZC2MF_01980386, 1, (STRLEN(?targetMotifMatchCigarC4LZC2MF_01980386) - STRLEN(REPLACE(?targetMotifMatchCigarC4LZC2MF_01980386, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1396), '}'), '')))), '[^-]', ''))) AS ?step2397) .
BIND(((?step2397 + ?targetMotifMatchRegionMatchBeginPositionMF_01980387) - 1) AS ?thisPositionOn125) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarC4LZC2MF_01980384, 1, (STRLEN(?templateMotifCigarC4LZC2MF_01980384) - STRLEN(REPLACE(?templateMotifCigarC4LZC2MF_01980384, CONCAT('^(?:-*[^-]){', STR(((251 - ?templateMotifSequenceMatchBeginPositionC4LZC2385) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1398) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarC4LZC2MF_01980386, 1, (STRLEN(?targetMotifMatchCigarC4LZC2MF_01980386) - STRLEN(REPLACE(?targetMotifMatchCigarC4LZC2MF_01980386, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1398), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarC4LZC2MF_01980386, 1, (STRLEN(?targetMotifMatchCigarC4LZC2MF_01980386) - STRLEN(REPLACE(?targetMotifMatchCigarC4LZC2MF_01980386, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1398), '}'), '')))), '[^-]', ''))) AS ?step2399) .
BIND(((?step2399 + ?targetMotifMatchRegionMatchBeginPositionMF_01980387) - 1) AS ?thisPositionOn126) .
BIND(?this AS ?pfs4t400) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn125))) AS ?pfsb121) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn126))) AS ?pfse122) .
FILTER (REGEX('MG[RH]', SUBSTR(?thisSequenceValue, ?thisPositionOn125, (?thisPositionOn126 - ?thisPositionOn125)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03185a120')) AS ?annotation120) .
BIND(?this AS ?pfs119) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch405 faldo:location ?templateMotifSequenceMatchRegionC4LZC2406 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationC4LZC2408 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarC4LZC2MF_01980401 .
?templateMotifSequenceMatchRegionC4LZC2406 faldo:begin ?templateMotifSequenceMatchBeginC4LZC2407 .
?templateMotifSequenceMatchBeginC4LZC2407 faldo:position ?templateMotifSequenceMatchBeginPositionC4LZC2402 ;
faldo:reference isoform:C4LZC2-1 .
?templateMotifSequenceProfileAlignmentOperationC4LZC2408 edam:has_input signature:MF_01980 ;
rdf:type edam:operation_0300 .
?targetMotifMatch409 faldo:location ?targetMotifMatchRegionMatch410 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01980412 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarC4LZC2MF_01980403 .
?targetMotifMatchRegionMatch410 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01980411 .
?targetMotifMatchRegionMatchBeginMF_01980411 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01980404 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01980412 edam:has_input signature:MF_01980 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarC4LZC2MF_01980401, 1, (STRLEN(?templateMotifCigarC4LZC2MF_01980401) - STRLEN(REPLACE(?templateMotifCigarC4LZC2MF_01980401, CONCAT('^(?:-*[^-]){', STR(((420 - ?templateMotifSequenceMatchBeginPositionC4LZC2402) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1413) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarC4LZC2MF_01980403, 1, (STRLEN(?targetMotifMatchCigarC4LZC2MF_01980403) - STRLEN(REPLACE(?targetMotifMatchCigarC4LZC2MF_01980403, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1413), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarC4LZC2MF_01980403, 1, (STRLEN(?targetMotifMatchCigarC4LZC2MF_01980403) - STRLEN(REPLACE(?targetMotifMatchCigarC4LZC2MF_01980403, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1413), '}'), '')))), '[^-]', ''))) AS ?step2414) .
BIND(((?step2414 + ?targetMotifMatchRegionMatchBeginPositionMF_01980404) - 1) AS ?thisPositionOn133) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarC4LZC2MF_01980401, 1, (STRLEN(?templateMotifCigarC4LZC2MF_01980401) - STRLEN(REPLACE(?templateMotifCigarC4LZC2MF_01980401, CONCAT('^(?:-*[^-]){', STR(((423 - ?templateMotifSequenceMatchBeginPositionC4LZC2402) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1415) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarC4LZC2MF_01980403, 1, (STRLEN(?targetMotifMatchCigarC4LZC2MF_01980403) - STRLEN(REPLACE(?targetMotifMatchCigarC4LZC2MF_01980403, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1415), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarC4LZC2MF_01980403, 1, (STRLEN(?targetMotifMatchCigarC4LZC2MF_01980403) - STRLEN(REPLACE(?targetMotifMatchCigarC4LZC2MF_01980403, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1415), '}'), '')))), '[^-]', ''))) AS ?step2416) .
BIND(((?step2416 + ?targetMotifMatchRegionMatchBeginPositionMF_01980404) - 1) AS ?thisPositionOn134) .
BIND(?this AS ?pfs4t417) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn133))) AS ?pfsb129) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn134))) AS ?pfse130) .
FILTER (REGEX('[HY][ARNDCQEGHILKMFPSTWYVBZJUOX]{2)R', SUBSTR(?thisSequenceValue, ?thisPositionOn133, (?thisPositionOn134 - ?thisPositionOn133)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03185a128')) AS ?annotation128) .
BIND(?this AS ?pfs127) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch422 faldo:location ?templateMotifSequenceMatchRegionC4LZC2423 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationC4LZC2425 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarC4LZC2MF_01980418 .
?templateMotifSequenceMatchRegionC4LZC2423 faldo:begin ?templateMotifSequenceMatchBeginC4LZC2424 .
?templateMotifSequenceMatchBeginC4LZC2424 faldo:position ?templateMotifSequenceMatchBeginPositionC4LZC2419 ;
faldo:reference isoform:C4LZC2-1 .
?templateMotifSequenceProfileAlignmentOperationC4LZC2425 edam:has_input signature:MF_01980 ;
rdf:type edam:operation_0300 .
?targetMotifMatch426 faldo:location ?targetMotifMatchRegionMatch427 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01980429 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarC4LZC2MF_01980420 .
?targetMotifMatchRegionMatch427 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01980428 .
?targetMotifMatchRegionMatchBeginMF_01980428 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01980421 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01980429 edam:has_input signature:MF_01980 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarC4LZC2MF_01980418, 1, (STRLEN(?templateMotifCigarC4LZC2MF_01980418) - STRLEN(REPLACE(?templateMotifCigarC4LZC2MF_01980418, CONCAT('^(?:-*[^-]){', STR(((204 - ?templateMotifSequenceMatchBeginPositionC4LZC2419) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1430) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarC4LZC2MF_01980420, 1, (STRLEN(?targetMotifMatchCigarC4LZC2MF_01980420) - STRLEN(REPLACE(?targetMotifMatchCigarC4LZC2MF_01980420, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1430), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarC4LZC2MF_01980420, 1, (STRLEN(?targetMotifMatchCigarC4LZC2MF_01980420) - STRLEN(REPLACE(?targetMotifMatchCigarC4LZC2MF_01980420, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1430), '}'), '')))), '[^-]', ''))) AS ?step2431) .
BIND(((?step2431 + ?targetMotifMatchRegionMatchBeginPositionMF_01980421) - 1) AS ?thisPositionOn139) .
BIND(?thisPositionOn139 AS ?thisPositionOn140) .
BIND(?this AS ?pfs4t432) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn139))) AS ?pfsb137) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn140))) AS ?pfse138) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn139, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_03185a136')) AS ?annotation136) .
BIND(?this AS ?pfs135) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch437 faldo:location ?templateMotifSequenceMatchRegionC4LZC2438 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationC4LZC2440 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarC4LZC2MF_01980433 .
?templateMotifSequenceMatchRegionC4LZC2438 faldo:begin ?templateMotifSequenceMatchBeginC4LZC2439 .
?templateMotifSequenceMatchBeginC4LZC2439 faldo:position ?templateMotifSequenceMatchBeginPositionC4LZC2434 ;
faldo:reference isoform:C4LZC2-1 .
?templateMotifSequenceProfileAlignmentOperationC4LZC2440 edam:has_input signature:MF_01980 ;
rdf:type edam:operation_0300 .
?targetMotifMatch441 faldo:location ?targetMotifMatchRegionMatch442 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01980444 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarC4LZC2MF_01980435 .
?targetMotifMatchRegionMatch442 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01980443 .
?targetMotifMatchRegionMatchBeginMF_01980443 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01980436 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01980444 edam:has_input signature:MF_01980 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarC4LZC2MF_01980433, 1, (STRLEN(?templateMotifCigarC4LZC2MF_01980433) - STRLEN(REPLACE(?templateMotifCigarC4LZC2MF_01980433, CONCAT('^(?:-*[^-]){', STR(((174 - ?templateMotifSequenceMatchBeginPositionC4LZC2434) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1445) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarC4LZC2MF_01980435, 1, (STRLEN(?targetMotifMatchCigarC4LZC2MF_01980435) - STRLEN(REPLACE(?targetMotifMatchCigarC4LZC2MF_01980435, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1445), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarC4LZC2MF_01980435, 1, (STRLEN(?targetMotifMatchCigarC4LZC2MF_01980435) - STRLEN(REPLACE(?targetMotifMatchCigarC4LZC2MF_01980435, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1445), '}'), '')))), '[^-]', ''))) AS ?step2446) .
BIND(((?step2446 + ?targetMotifMatchRegionMatchBeginPositionMF_01980436) - 1) AS ?thisPositionOn146) .
BIND(?thisPositionOn146 AS ?thisPositionOn147) .
BIND(?this AS ?pfs4t447) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn146))) AS ?pfsb143) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn147))) AS ?pfse144) .
FILTER (REGEX('[DE]', SUBSTR(?thisSequenceValue, ?thisPositionOn146, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_03185a142')) AS ?annotation142) .
BIND(?this AS ?pfs141) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch452 faldo:location ?templateMotifSequenceMatchRegionC4LZC2453 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationC4LZC2455 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarC4LZC2MF_01980448 .
?templateMotifSequenceMatchRegionC4LZC2453 faldo:begin ?templateMotifSequenceMatchBeginC4LZC2454 .
?templateMotifSequenceMatchBeginC4LZC2454 faldo:position ?templateMotifSequenceMatchBeginPositionC4LZC2449 ;
faldo:reference isoform:C4LZC2-1 .
?templateMotifSequenceProfileAlignmentOperationC4LZC2455 edam:has_input signature:MF_01980 ;
rdf:type edam:operation_0300 .
?targetMotifMatch456 faldo:location ?targetMotifMatchRegionMatch457 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01980459 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarC4LZC2MF_01980450 .
?targetMotifMatchRegionMatch457 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01980458 .
?targetMotifMatchRegionMatchBeginMF_01980458 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01980451 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01980459 edam:has_input signature:MF_01980 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarC4LZC2MF_01980448, 1, (STRLEN(?templateMotifCigarC4LZC2MF_01980448) - STRLEN(REPLACE(?templateMotifCigarC4LZC2MF_01980448, CONCAT('^(?:-*[^-]){', STR(((310 - ?templateMotifSequenceMatchBeginPositionC4LZC2449) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1460) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarC4LZC2MF_01980450, 1, (STRLEN(?targetMotifMatchCigarC4LZC2MF_01980450) - STRLEN(REPLACE(?targetMotifMatchCigarC4LZC2MF_01980450, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1460), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarC4LZC2MF_01980450, 1, (STRLEN(?targetMotifMatchCigarC4LZC2MF_01980450) - STRLEN(REPLACE(?targetMotifMatchCigarC4LZC2MF_01980450, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1460), '}'), '')))), '[^-]', ''))) AS ?step2461) .
BIND(((?step2461 + ?targetMotifMatchRegionMatchBeginPositionMF_01980451) - 1) AS ?thisPositionOn154) .
BIND(?thisPositionOn154 AS ?thisPositionOn155) .
BIND(?this AS ?pfs4t462) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn154))) AS ?pfsb150) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn155))) AS ?pfse151) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn154, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_03185a149')) AS ?annotation149) .
BIND(?this AS ?pfs148) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch467 faldo:location ?templateMotifSequenceMatchRegionC4LZC2468 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationC4LZC2470 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarC4LZC2MF_01980463 .
?templateMotifSequenceMatchRegionC4LZC2468 faldo:begin ?templateMotifSequenceMatchBeginC4LZC2469 .
?templateMotifSequenceMatchBeginC4LZC2469 faldo:position ?templateMotifSequenceMatchBeginPositionC4LZC2464 ;
faldo:reference isoform:C4LZC2-1 .
?templateMotifSequenceProfileAlignmentOperationC4LZC2470 edam:has_input signature:MF_01980 ;
rdf:type edam:operation_0300 .
?targetMotifMatch471 faldo:location ?targetMotifMatchRegionMatch472 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01980474 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarC4LZC2MF_01980465 .
?targetMotifMatchRegionMatch472 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01980473 .
?targetMotifMatchRegionMatchBeginMF_01980473 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01980466 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01980474 edam:has_input signature:MF_01980 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarC4LZC2MF_01980463, 1, (STRLEN(?templateMotifCigarC4LZC2MF_01980463) - STRLEN(REPLACE(?templateMotifCigarC4LZC2MF_01980463, CONCAT('^(?:-*[^-]){', STR(((144 - ?templateMotifSequenceMatchBeginPositionC4LZC2464) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1475) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarC4LZC2MF_01980465, 1, (STRLEN(?targetMotifMatchCigarC4LZC2MF_01980465) - STRLEN(REPLACE(?targetMotifMatchCigarC4LZC2MF_01980465, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1475), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarC4LZC2MF_01980465, 1, (STRLEN(?targetMotifMatchCigarC4LZC2MF_01980465) - STRLEN(REPLACE(?targetMotifMatchCigarC4LZC2MF_01980465, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1475), '}'), '')))), '[^-]', ''))) AS ?step2476) .
BIND(((?step2476 + ?targetMotifMatchRegionMatchBeginPositionMF_01980466) - 1) AS ?thisPositionOn161) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarC4LZC2MF_01980463, 1, (STRLEN(?templateMotifCigarC4LZC2MF_01980463) - STRLEN(REPLACE(?templateMotifCigarC4LZC2MF_01980463, CONCAT('^(?:-*[^-]){', STR(((145 - ?templateMotifSequenceMatchBeginPositionC4LZC2464) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1477) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarC4LZC2MF_01980465, 1, (STRLEN(?targetMotifMatchCigarC4LZC2MF_01980465) - STRLEN(REPLACE(?targetMotifMatchCigarC4LZC2MF_01980465, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1477), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarC4LZC2MF_01980465, 1, (STRLEN(?targetMotifMatchCigarC4LZC2MF_01980465) - STRLEN(REPLACE(?targetMotifMatchCigarC4LZC2MF_01980465, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1477), '}'), '')))), '[^-]', ''))) AS ?step2478) .
BIND(((?step2478 + ?targetMotifMatchRegionMatchBeginPositionMF_01980466) - 1) AS ?thisPositionOn162) .
BIND(?this AS ?pfs5t479) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn161))) AS ?pfsb158) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn162))) AS ?pfse159) .
FILTER (REGEX('[RK][ARNDCQEGHILKMFPSTWYVBZJUOX]', SUBSTR(?thisSequenceValue, ?thisPositionOn161, (?thisPositionOn162 - ?thisPositionOn161)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03185a157')) AS ?annotation157) .
BIND(?this AS ?pfs156) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch484 faldo:location ?templateMotifSequenceMatchRegionC4LZC2485 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationC4LZC2487 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarC4LZC2MF_01980480 .
?templateMotifSequenceMatchRegionC4LZC2485 faldo:begin ?templateMotifSequenceMatchBeginC4LZC2486 .
?templateMotifSequenceMatchBeginC4LZC2486 faldo:position ?templateMotifSequenceMatchBeginPositionC4LZC2481 ;
faldo:reference isoform:C4LZC2-1 .
?templateMotifSequenceProfileAlignmentOperationC4LZC2487 edam:has_input signature:MF_01980 ;
rdf:type edam:operation_0300 .
?targetMotifMatch488 faldo:location ?targetMotifMatchRegionMatch489 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01980491 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarC4LZC2MF_01980482 .
?targetMotifMatchRegionMatch489 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01980490 .
?targetMotifMatchRegionMatchBeginMF_01980490 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01980483 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01980491 edam:has_input signature:MF_01980 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarC4LZC2MF_01980480, 1, (STRLEN(?templateMotifCigarC4LZC2MF_01980480) - STRLEN(REPLACE(?templateMotifCigarC4LZC2MF_01980480, CONCAT('^(?:-*[^-]){', STR(((173 - ?templateMotifSequenceMatchBeginPositionC4LZC2481) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1492) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarC4LZC2MF_01980482, 1, (STRLEN(?targetMotifMatchCigarC4LZC2MF_01980482) - STRLEN(REPLACE(?targetMotifMatchCigarC4LZC2MF_01980482, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1492), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarC4LZC2MF_01980482, 1, (STRLEN(?targetMotifMatchCigarC4LZC2MF_01980482) - STRLEN(REPLACE(?targetMotifMatchCigarC4LZC2MF_01980482, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1492), '}'), '')))), '[^-]', ''))) AS ?step2493) .
BIND(((?step2493 + ?targetMotifMatchRegionMatchBeginPositionMF_01980483) - 1) AS ?thisPositionOn168) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarC4LZC2MF_01980480, 1, (STRLEN(?templateMotifCigarC4LZC2MF_01980480) - STRLEN(REPLACE(?templateMotifCigarC4LZC2MF_01980480, CONCAT('^(?:-*[^-]){', STR(((176 - ?templateMotifSequenceMatchBeginPositionC4LZC2481) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1494) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarC4LZC2MF_01980482, 1, (STRLEN(?targetMotifMatchCigarC4LZC2MF_01980482) - STRLEN(REPLACE(?targetMotifMatchCigarC4LZC2MF_01980482, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1494), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarC4LZC2MF_01980482, 1, (STRLEN(?targetMotifMatchCigarC4LZC2MF_01980482) - STRLEN(REPLACE(?targetMotifMatchCigarC4LZC2MF_01980482, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1494), '}'), '')))), '[^-]', ''))) AS ?step2495) .
BIND(((?step2495 + ?targetMotifMatchRegionMatchBeginPositionMF_01980483) - 1) AS ?thisPositionOn169) .
BIND(?this AS ?pfs5t496) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn168))) AS ?pfsb165) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn169))) AS ?pfse166) .
FILTER (REGEX('G[DE]G[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn168, (?thisPositionOn169 - ?thisPositionOn168)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03185a164')) AS ?annotation164) .
BIND(?this AS ?pfs163) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch501 faldo:location ?templateMotifSequenceMatchRegionC4LZC2502 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationC4LZC2504 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarC4LZC2MF_01980497 .
?templateMotifSequenceMatchRegionC4LZC2502 faldo:begin ?templateMotifSequenceMatchBeginC4LZC2503 .
?templateMotifSequenceMatchBeginC4LZC2503 faldo:position ?templateMotifSequenceMatchBeginPositionC4LZC2498 ;
faldo:reference isoform:C4LZC2-1 .
?templateMotifSequenceProfileAlignmentOperationC4LZC2504 edam:has_input signature:MF_01980 ;
rdf:type edam:operation_0300 .
?targetMotifMatch505 faldo:location ?targetMotifMatchRegionMatch506 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01980508 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarC4LZC2MF_01980499 .
?targetMotifMatchRegionMatch506 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01980507 .
?targetMotifMatchRegionMatchBeginMF_01980507 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01980500 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01980508 edam:has_input signature:MF_01980 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarC4LZC2MF_01980497, 1, (STRLEN(?templateMotifCigarC4LZC2MF_01980497) - STRLEN(REPLACE(?templateMotifCigarC4LZC2MF_01980497, CONCAT('^(?:-*[^-]){', STR(((80 - ?templateMotifSequenceMatchBeginPositionC4LZC2498) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1509) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarC4LZC2MF_01980499, 1, (STRLEN(?targetMotifMatchCigarC4LZC2MF_01980499) - STRLEN(REPLACE(?targetMotifMatchCigarC4LZC2MF_01980499, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1509), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarC4LZC2MF_01980499, 1, (STRLEN(?targetMotifMatchCigarC4LZC2MF_01980499) - STRLEN(REPLACE(?targetMotifMatchCigarC4LZC2MF_01980499, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1509), '}'), '')))), '[^-]', ''))) AS ?step2510) .
BIND(((?step2510 + ?targetMotifMatchRegionMatchBeginPositionMF_01980500) - 1) AS ?thisPositionOn175) .
BIND(?thisPositionOn175 AS ?thisPositionOn176) .
BIND(?this AS ?pfs5t511) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn175))) AS ?pfsb172) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn176))) AS ?pfse173) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn175, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_03185a171')) AS ?annotation171) .
BIND(?this AS ?pfs170) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag512) .
}
BIND(IF(BOUND(?tagFT_2), ?caseWithTag512, ?UNBOUND_VARIABLE) AS ?case4) .
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:33090 .
BIND(?this AS ?case5) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag513) .
}
BIND(IF((BOUND(?tagFT_1) || BOUND(?tagFT_2)), ?caseWithTag513, ?UNBOUND_VARIABLE) AS ?case6) .
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag514) .
BIND(URI(CONCAT(STR(?this), '#MF_03185a8')) AS ?name8) .
BIND(URI(CONCAT(STR(?this), '#MF_03185a9')) AS ?name9) .
}
BIND(IF((BOUND(?tagFT_2) || BOUND(?tagFT_1)), ?caseWithTag514, ?UNBOUND_VARIABLE) AS ?case7) .
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:33090 .
BIND(?this AS ?caseWithTag515) .
BIND(URI(CONCAT(STR(?this), '#MF_03185a11')) AS ?name11) .
BIND(URI(CONCAT(STR(?this), '#MF_03185a12')) AS ?name12) .
BIND(URI(CONCAT(STR(?this), '#MF_03185a13')) AS ?name13) .
BIND(URI(CONCAT(STR(?this), '#MF_03185a14')) AS ?name14) .
}
BIND(IF(BOUND(?tagFT_1), ?caseWithTag515, ?UNBOUND_VARIABLE) AS ?case10) .
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:33090 .
})) .
BIND(?this AS ?caseWithTag516) .
BIND(URI(CONCAT(STR(?this), '#MF_03185a16')) AS ?name16) .
BIND(URI(CONCAT(STR(?this), '#MF_03185a17')) AS ?name17) .
BIND(URI(CONCAT(STR(?this), '#MF_03185a18')) AS ?name18) .
BIND(URI(CONCAT(STR(?this), '#MF_03185a19')) AS ?name19) .
}
BIND(IF(BOUND(?tagFT_1), ?caseWithTag516, ?UNBOUND_VARIABLE) AS ?case15) .
OPTIONAL {
?this a up:Protein .
VALUES ?supertaxon517 {taxon:33090 taxon:5794}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon517 .
BIND(?this AS ?case20) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
VALUES ?supertaxon518 {taxon:33090 taxon:5794}
?thisOrganism rdfs:subClassOf+ ?supertaxon518 .
})) .
BIND(?this AS ?case21) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:33090 .
BIND(?this AS ?caseWithTag519) .
}
BIND(IF((BOUND(?tagFT_1) || BOUND(?tagFT_2)), ?caseWithTag519, ?UNBOUND_VARIABLE) AS ?case22) .
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:33090 .
})) .
BIND(?this AS ?caseWithTag520) .
BIND(URI(CONCAT(STR(?this), '#MF_03185a24')) AS ?name24) .
}
BIND(IF((BOUND(?tagFT_2) || BOUND(?tagFT_1)), ?caseWithTag520, ?UNBOUND_VARIABLE) AS ?case23) .
}
"xsd:string |
