| http://purl.uniprot.org/unirules/MF_04132#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:966079 up:source unirule:MF_04132 .
_:966080 up:source unirule:MF_04132 .
_:966081 up:source unirule:MF_04132 .
_:966082 up:source unirule:MF_04132 .
_:966083 up:source unirule:MF_04132 .
_:966084 up:source unirule:MF_04132 .
_:966085 up:source unirule:MF_04132 .
_:966086 up:source unirule:MF_04132 .
_:966087 up:source unirule:MF_04132 .
_:966088 up:source unirule:MF_04132 .
_:966089 up:source unirule:MF_04132 .
_:966090 up:source unirule:MF_04132 .
_:966091 up:source unirule:MF_04132 .
_:966092 up:source unirule:MF_04132 .
_:966093 up:source unirule:MF_04132 .
_:966094 up:source unirule:MF_04132 .
_:966095 up:source unirule:MF_04132 .
_:966096 up:source unirule:MF_04132 .
_:966097 up:source unirule:MF_04132 .
_:966098 up:source unirule:MF_04132 .
_:966099 up:source unirule:MF_04132 .
_:966100 up:source unirule:MF_04132 .
_:966101 up:source unirule:MF_04132 .
_:966102 up:source unirule:MF_04132 .
_:966103 up:source unirule:MF_04132 .
_:966104 up:source unirule:MF_04132 .
_:966105 up:fullName 'Outer capsid protein VP8*' ;
rdf:type up:Structured_Name .
_:966106 up:source unirule:MF_04132 .
_:966107 up:fullName 'Outer capsid protein VP8*' ;
rdf:type up:Structured_Name .
_:966108 up:source unirule:MF_04132 .
_:966109 up:fullName 'Outer capsid protein VP5*' ;
rdf:type up:Structured_Name .
_:966110 up:source unirule:MF_04132 .
_:966111 up:fullName 'Outer capsid protein VP5*' ;
rdf:type up:Structured_Name .
_:966112 up:source unirule:MF_04132 .
_:966113 up:source unirule:MF_04132 .
_:966114 up:source unirule:MF_04132 .
_:966115 up:source unirule:MF_04132 .
_:966116 up:source unirule:MF_04132 .
_:966117 up:source unirule:MF_04132 .
_:966118 up:source unirule:MF_04132 .
_:966119 up:source unirule:MF_04132 .
_:966120 up:source unirule:MF_04132 .
_:966121 up:source unirule:MF_04132 .
_:966122 up:source unirule:MF_04132 .
_:966123 up:source unirule:MF_04132 .
_:966124 up:source unirule:MF_04132 .
_:966125 up:source unirule:MF_04132 .
_:966126 up:source unirule:MF_04132 .
_:966127 up:source unirule:MF_04132 .
_:966128 up:source unirule:MF_04132 .
_:966129 up:source unirule:MF_04132 .
_:966130 up:source unirule:MF_04132 .
_:966131 up:source unirule:MF_04132 .
_:966132 up:source unirule:MF_04132 .
_:966133 up:source unirule:MF_04132 .
_:966134 up:source unirule:MF_04132 .
?this up:annotation ?annotation0 ,
?annotation1 ,
?annotation7 ,
?annotation8 ,
?annotation9 ,
?annotation10 ,
?annotation11 ;
up:classifiedWith GO:0019062 ,
GO:0039624 ,
GO:0039665 ,
GO:0044168 ,
keyword:1032 ,
keyword:1035 ,
keyword:1037 ,
keyword:1038 ,
keyword:1043 ,
keyword:1152 ,
keyword:1160 ,
keyword:1161 ,
keyword:1162 ,
keyword:1173 ,
keyword:167 ,
keyword:348 ,
keyword:472 ,
keyword:945 ,
keyword:946 ;
up:component ?namedpart12 ,
?namedpart13 ,
?namedpart14 ,
?namedpart15 .
?annotation0 a up:Function_Annotation ;
rdfs:comment 'Outer capsid protein VP4: Spike-forming protein that mediates virion attachment to the host epithelial cell receptors and plays a major role in cell penetration, determination of host range restriction and virulence. Rotavirus attachment and entry into the host cell probably involves multiple sequential contacts between the outer capsid proteins VP4 and VP7, and the cell receptors. It is subsequently lost, together with VP7, following virus entry into the host cell. Following entry into the host cell, low intracellular or intravesicular Ca(2+) concentration probably causes the calcium-stabilized VP7 trimers to dissociate from the virion. This step is probably necessary for the membrane-disrupting entry step and the release of VP4, which is locked onto the virion by VP7. During the virus exit from the host cell, VP4 seems to be required to target the newly formed virions to the host cell lipid rafts.' .
?annotation1 a up:Subcellular_Location_Annotation ;
rdfs:comment 'The outer layer contains 180 copies of VP4, grouped as 60 dimers. Immature double-layered particles assembled in the cytoplasm bud across the membrane of the endoplasmic reticulum, acquiring during this process a transient lipid membrane that is modified with the ER resident viral glycoproteins NSP4 and VP7; these enveloped particles also contain VP4. As the particles move towards the interior of the ER cisternae, the transient lipid membrane and the non-structural protein NSP4 are lost, while the virus surface proteins VP4 and VP7 rearrange to form the outermost virus protein layer, yielding mature infectious triple-layered particles. VP4 also seems to associate with lipid rafts of the host cell membrane probably for the exit of the virus from the infected cell by an alternate pathway' .
?annotation1li2 up:cellularComponent .
?annotation1li3 up:cellularComponent .
?annotation1li4 up:cellularComponent .
?annotation1li5 up:cellularComponent .
?annotation1li6 up:cellularComponent .
?annotation7 a up:Domain_Annotation ;
rdfs:comment 'Outer capsid protein VP4: The VP4 spike is divided into a foot, a stalk and body, and a head.' .
?annotation8 a up:PTM_Annotation ;
rdfs:comment 'Outer capsid protein VP4: Proteolytic cleavage by trypsin results in activation of VP4 functions and greatly increases infectivity. The penetration into the host cell is dependent on trypsin treatment of VP4. It produces two peptides, VP5* and VP8* that remain associated with the virion. Cleavage of VP4 by trypsin probably occurs in vivo in the lumen of the intestine prior to infection of enterocytes. Trypsin seems to be incorporated into the three-layered viral particles but remains inactive as long as the viral outer capsid is intact and would only be activated upon the solubilization of the latter.' .
?annotation9 a up:Annotation ;
rdfs:comment 'In group A rotaviruses, VP4 defines the P serotype.' .
?annotation10 a up:Annotation ;
rdfs:comment 'Some rotavirus strains are neuraminidase-sensitive and require sialic acid to attach to the cell surface. Some rotavirus strains are integrin-dependent. Some rotavirus strains depend on ganglioside for their entry into the host cell. Hsp70 also seems to be involved in the entry of some strains.' .
?annotation11 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the rotavirus VP4 family.' .
?namedpart12 up:recommendedName _:966105 .
?namedpart13 up:recommendedName _:966107 .
?namedpart14 up:recommendedName _:966109 .
?namedpart15 up:recommendedName _:966111 .
?case16 up:classifiedWith keyword:1015 .
?pfs22 up:annotation ?annotation23 .
?annotation23 faldo:begin ?pfsb24 ;
faldo:end ?pfse25 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Probable cleavage' .
?pfsb24 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?pfse25 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfs28 up:annotation ?annotation29 .
?annotation29 faldo:begin ?pfsb30 ;
faldo:end ?pfse31 ;
rdf:type up:Disulfide_Bond_Annotation .
?pfsb30 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?pfse31 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfs34 up:annotation ?annotation35 .
?annotation35 faldo:begin ?pfsb36 ;
faldo:end ?pfse37 ;
rdf:type up:Disulfide_Bond_Annotation .
?pfsb36 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?pfse37 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?pfs40 up:annotation ?annotation41 ,
?annotation46 .
?annotation41 faldo:begin ?pfsb42 ;
faldo:end ?pfse43 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Binding to sialic acid' .
?pfsb42 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?pfse43 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?annotation46 faldo:begin ?pfsb47 ;
faldo:end ?pfse48 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Binding to sialic acid' .
?pfsb47 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?pfse48 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?pfs51 up:annotation ?annotation52 .
?annotation52 faldo:begin ?pfsb53 ;
faldo:end ?pfse54 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Cleavage' .
?pfsb53 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
?pfse54 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?pfs57 up:annotation ?annotation58 .
?annotation58 faldo:begin ?pfsb59 ;
faldo:end ?pfse60 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Cleavage; associated with enhancement of infectivity' .
?pfsb59 faldo:position ?thisPositionOn61 ;
rdf:type faldo:ExactPosition .
?pfse60 faldo:position ?thisPositionOn62 ;
rdf:type faldo:ExactPosition .
?pfs63 up:annotation ?annotation64 .
?annotation64 faldo:begin ?pfsb65 ;
faldo:end ?pfse66 ;
rdf:type up:Chain_Annotation ;
rdfs:comment 'Outer capsid protein VP4' .
?pfsb65 faldo:position ?thisPositionOn67 ;
rdf:type faldo:ExactPosition .
?pfse66 faldo:position ?thisPositionOn68 ;
rdf:type faldo:ExactPosition .
?pfs69 up:annotation ?annotation70 .
?annotation70 faldo:begin ?pfsb71 ;
faldo:end ?pfse72 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Hydrophobic; possible role in virus entry into host cell' .
?pfsb71 faldo:position ?thisPositionOn73 ;
rdf:type faldo:ExactPosition .
?pfse72 faldo:position ?thisPositionOn74 ;
rdf:type faldo:ExactPosition .
?pfs75 up:annotation ?annotation76 .
?annotation76 faldo:begin ?pfsb77 ;
faldo:end ?pfse78 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Spike head' .
?pfsb77 faldo:position ?thisPositionOn79 ;
rdf:type faldo:ExactPosition .
?pfse78 faldo:position ?thisPositionOn80 ;
rdf:type faldo:ExactPosition .
?pfs81 up:annotation ?annotation82 .
?annotation82 faldo:begin ?pfsb83 ;
faldo:end ?pfse84 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Spike body and stalk (antigen domain)' .
?pfsb83 faldo:position ?thisPositionOn85 ;
rdf:type faldo:ExactPosition .
?pfse84 faldo:position ?thisPositionOn86 ;
rdf:type faldo:ExactPosition .
?pfs87 up:annotation ?annotation88 .
?annotation88 faldo:begin ?pfsb89 ;
faldo:end ?pfse90 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Hydrophobic; possible role in virus entry into host cell' .
?pfsb89 faldo:position ?thisPositionOn91 ;
rdf:type faldo:ExactPosition .
?pfse90 faldo:position ?thisPositionOn92 ;
rdf:type faldo:ExactPosition .
?pfs93 up:annotation ?annotation94 .
?annotation94 faldo:begin ?pfsb95 ;
faldo:end ?pfse96 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Spike foot' .
?pfsb95 faldo:position ?thisPositionOn97 ;
rdf:type faldo:ExactPosition .
?pfse96 faldo:position ?thisPositionOn98 ;
rdf:type faldo:ExactPosition .
?pfs99 up:annotation ?annotation100 .
?annotation100 faldo:begin ?pfsb101 ;
faldo:end ?pfse102 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Cleavage' .
?pfsb101 faldo:position ?thisPositionOn103 ;
rdf:type faldo:ExactPosition .
?pfse102 faldo:position ?thisPositionOn104 ;
rdf:type faldo:ExactPosition .
?pfs105 up:annotation ?annotation106 .
?annotation106 faldo:begin ?pfsb107 ;
faldo:end ?pfse108 ;
rdf:type up:Motif_Annotation ;
rdfs:comment 'DGE motif; interaction with ITGA2/ITGB1 heterodimer' .
?pfsb107 faldo:position ?thisPositionOn109 ;
rdf:type faldo:ExactPosition .
?pfse108 faldo:position ?thisPositionOn110 ;
rdf:type faldo:ExactPosition .
?pfs111 up:annotation ?annotation112 .
?annotation112 faldo:begin ?pfsb113 ;
faldo:end ?pfse114 ;
rdf:type up:Motif_Annotation ;
rdfs:comment 'YGL motif; interaction with ITGA4' .
?pfsb113 faldo:position ?thisPositionOn115 ;
rdf:type faldo:ExactPosition .
?pfse114 faldo:position ?thisPositionOn116 ;
rdf:type faldo:ExactPosition .
?pfs117 up:annotation ?annotation118 .
?annotation118 faldo:begin ?pfsb119 ;
faldo:end ?pfse120 ;
rdf:type up:Motif_Annotation ;
rdfs:comment 'KID motif; interaction with HSPA8' .
?pfsb119 faldo:position ?thisPositionOn121 ;
rdf:type faldo:ExactPosition .
?pfse120 faldo:position ?thisPositionOn122 ;
rdf:type faldo:ExactPosition .
?pfs123 up:annotation ?annotation124 .
?annotation124 faldo:begin ?pfsb125 ;
faldo:end ?pfse126 ;
rdf:type up:Chain_Annotation ;
rdfs:comment 'Outer capsid protein VP5*' .
?pfsb125 faldo:position ?thisPositionOn127 ;
rdf:type faldo:ExactPosition .
?pfse126 faldo:position ?thisPositionOn128 ;
rdf:type faldo:ExactPosition .
?pfs129 up:annotation ?annotation130 .
?annotation130 faldo:begin ?pfsb131 ;
faldo:end ?pfse132 ;
rdf:type up:Chain_Annotation ;
rdfs:comment 'Outer capsid protein VP5*' .
?pfsb131 faldo:position ?thisPositionOn133 ;
rdf:type faldo:ExactPosition .
?pfse132 faldo:position ?thisPositionOn134 ;
rdf:type faldo:ExactPosition .
?pfs135 up:annotation ?annotation136 .
?annotation136 faldo:begin ?pfsb137 ;
faldo:end ?pfse138 ;
rdf:type up:Chain_Annotation ;
rdfs:comment 'Outer capsid protein VP8*' .
?pfsb137 faldo:position ?thisPositionOn139 ;
rdf:type faldo:ExactPosition .
?pfse138 faldo:position ?thisPositionOn140 ;
rdf:type faldo:ExactPosition .
?sam141 up:classifiedWith keyword:175 .
?coiledCoil142 faldo:begin ?coiledCoilb143 ;
faldo:end ?coiledCoile144 .
?coiledCoilb143 faldo:position ?coiledCoilbp145 .
?coiledCoile144 faldo:position ?coiledCoilep146 .
?keyword147 up:range ?coiledCoil142 .
_:966135 a rdf:Statement ;
up:attribution _:966079 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation0 .
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up:attribution _:966080 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation1 .
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rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
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rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
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rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:966140 a rdf:Statement ;
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rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
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rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:966142 a rdf:Statement ;
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rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:167 .
_:966143 a rdf:Statement ;
up:attribution _:966087 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:348 .
_:966144 a rdf:Statement ;
up:attribution _:966088 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1032 .
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rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1035 .
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rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1037 .
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up:attribution _:966091 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1038 .
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rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1043 .
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rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:945 .
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rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
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rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1152 .
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rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1161 .
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up:attribution _:966097 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1162 .
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up:attribution _:966098 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1173 .
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up:attribution _:966099 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:946 .
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up:attribution _:966100 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1160 .
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up:attribution _:966101 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0044168 .
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up:attribution _:966102 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0039624 .
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rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0039665 .
_:966160 a rdf:Statement ;
up:attribution _:966104 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019062 .
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up:attribution _:966106 ;
rdf:subject ?this ;
rdf:predicate up:component ;
rdf:object ?namedpart12 .
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rdf:subject ?this ;
rdf:predicate up:component ;
rdf:object ?namedpart13 .
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rdf:subject ?this ;
rdf:predicate up:component ;
rdf:object ?namedpart14 .
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rdf:subject ?this ;
rdf:predicate up:component ;
rdf:object ?namedpart15 .
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up:attribution _:966113 ;
rdf:subject ?case16 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1015 .
_:966166 a rdf:Statement ;
up:source unirule:MF_04132 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
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up:attribution _:966114 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
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up:source unirule:MF_04132 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
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rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
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up:source unirule:MF_04132 ;
rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
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rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
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up:source unirule:MF_04132 ;
rdf:subject ?pfs40 ;
rdf:predicate up:annotation ;
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rdf:subject ?pfs40 ;
rdf:predicate up:annotation ;
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up:source unirule:MF_04132 ;
rdf:subject ?pfs40 ;
rdf:predicate up:annotation ;
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rdf:subject ?pfs40 ;
rdf:predicate up:annotation ;
rdf:object ?annotation46 .
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up:source unirule:MF_04132 ;
rdf:subject ?pfs51 ;
rdf:predicate up:annotation ;
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rdf:subject ?pfs51 ;
rdf:predicate up:annotation ;
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up:source unirule:MF_04132 ;
rdf:subject ?pfs57 ;
rdf:predicate up:annotation ;
rdf:object ?annotation58 .
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rdf:subject ?pfs57 ;
rdf:predicate up:annotation ;
rdf:object ?annotation58 .
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up:source unirule:MF_04132 ;
rdf:subject ?pfs63 ;
rdf:predicate up:annotation ;
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rdf:subject ?pfs63 ;
rdf:predicate up:annotation ;
rdf:object ?annotation64 .
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up:source unirule:MF_04132 ;
rdf:subject ?pfs69 ;
rdf:predicate up:annotation ;
rdf:object ?annotation70 .
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rdf:subject ?pfs69 ;
rdf:predicate up:annotation ;
rdf:object ?annotation70 .
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up:source unirule:MF_04132 ;
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rdf:predicate up:annotation ;
rdf:object ?annotation76 .
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rdf:subject ?pfs75 ;
rdf:predicate up:annotation ;
rdf:object ?annotation76 .
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up:source unirule:MF_04132 ;
rdf:subject ?pfs81 ;
rdf:predicate up:annotation ;
rdf:object ?annotation82 .
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rdf:subject ?pfs81 ;
rdf:predicate up:annotation ;
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up:source unirule:MF_04132 ;
rdf:subject ?pfs87 ;
rdf:predicate up:annotation ;
rdf:object ?annotation88 .
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rdf:subject ?pfs87 ;
rdf:predicate up:annotation ;
rdf:object ?annotation88 .
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rdf:subject ?pfs93 ;
rdf:predicate up:annotation ;
rdf:object ?annotation94 .
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rdf:subject ?pfs93 ;
rdf:predicate up:annotation ;
rdf:object ?annotation94 .
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up:source unirule:MF_04132 ;
rdf:subject ?pfs99 ;
rdf:predicate up:annotation ;
rdf:object ?annotation100 .
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rdf:subject ?pfs99 ;
rdf:predicate up:annotation ;
rdf:object ?annotation100 .
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up:source unirule:MF_04132 ;
rdf:subject ?pfs105 ;
rdf:predicate up:annotation ;
rdf:object ?annotation106 .
_:966195 a rdf:Statement ;
up:attribution _:966128 ;
rdf:subject ?pfs105 ;
rdf:predicate up:annotation ;
rdf:object ?annotation106 .
_:966196 a rdf:Statement ;
up:source unirule:MF_04132 ;
rdf:subject ?pfs111 ;
rdf:predicate up:annotation ;
rdf:object ?annotation112 .
_:966197 a rdf:Statement ;
up:attribution _:966129 ;
rdf:subject ?pfs111 ;
rdf:predicate up:annotation ;
rdf:object ?annotation112 .
_:966198 a rdf:Statement ;
up:source unirule:MF_04132 ;
rdf:subject ?pfs117 ;
rdf:predicate up:annotation ;
rdf:object ?annotation118 .
_:966199 a rdf:Statement ;
up:attribution _:966130 ;
rdf:subject ?pfs117 ;
rdf:predicate up:annotation ;
rdf:object ?annotation118 .
_:966200 a rdf:Statement ;
up:source unirule:MF_04132 ;
rdf:subject ?pfs123 ;
rdf:predicate up:annotation ;
rdf:object ?annotation124 .
_:966201 a rdf:Statement ;
up:attribution _:966131 ;
rdf:subject ?pfs123 ;
rdf:predicate up:annotation ;
rdf:object ?annotation124 .
_:966202 a rdf:Statement ;
up:source unirule:MF_04132 ;
rdf:subject ?pfs129 ;
rdf:predicate up:annotation ;
rdf:object ?annotation130 .
_:966203 a rdf:Statement ;
up:attribution _:966132 ;
rdf:subject ?pfs129 ;
rdf:predicate up:annotation ;
rdf:object ?annotation130 .
_:966204 a rdf:Statement ;
up:source unirule:MF_04132 ;
rdf:subject ?pfs135 ;
rdf:predicate up:annotation ;
rdf:object ?annotation136 .
_:966205 a rdf:Statement ;
up:attribution _:966133 ;
rdf:subject ?pfs135 ;
rdf:predicate up:annotation ;
rdf:object ?annotation136 .
_:966206 a rdf:Statement ;
up:attribution _:966134 ;
rdf:subject ?sam141 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:175 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_04132
#Rule MF_04132 Created by:? on:2018-03-28 Modified by:Chantal Hulo on:2021-08-26
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_04132 .
?thisOrganism rdfs:subClassOf+ taxon:10912 .
BIND(URI(CONCAT(STR(?this), '#MF_04132a0')) AS ?annotation0) .
BIND(URI(CONCAT(STR(?this), '#MF_04132a1')) AS ?annotation1) .
BIND(URI(CONCAT(STR(?this), '#MF_04132a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_04132a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_04132a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_04132a10')) AS ?annotation10) .
BIND(URI(CONCAT(STR(?this), '#MF_04132a11')) AS ?annotation11) .
BIND(URI(CONCAT(STR(?this), '#MF_04132a12')) AS ?namedpart12) .
BIND(URI(CONCAT(STR(?this), '#MF_04132a13')) AS ?namedpart13) .
BIND(URI(CONCAT(STR(?this), '#MF_04132a14')) AS ?namedpart14) .
BIND(URI(CONCAT(STR(?this), '#MF_04132a15')) AS ?namedpart15) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch152 faldo:location ?templateMotifSequenceMatchRegionP12474153 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP12474155 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP12474MF_04132148 .
?templateMotifSequenceMatchRegionP12474153 faldo:begin ?templateMotifSequenceMatchBeginP12474154 .
?templateMotifSequenceMatchBeginP12474154 faldo:position ?templateMotifSequenceMatchBeginPositionP12474149 ;
faldo:reference isoform:P12474-1 .
?templateMotifSequenceProfileAlignmentOperationP12474155 edam:has_input signature:MF_04132 ;
rdf:type edam:operation_0300 .
?targetMotifMatch156 faldo:location ?targetMotifMatchRegionMatch157 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04132159 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP12474MF_04132150 .
?targetMotifMatchRegionMatch157 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04132158 .
?targetMotifMatchRegionMatchBeginMF_04132158 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04132151 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04132159 edam:has_input signature:MF_04132 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagcleavage3) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12474MF_04132148, 1, (STRLEN(?templateMotifCigarP12474MF_04132148) - STRLEN(REPLACE(?templateMotifCigarP12474MF_04132148, CONCAT('^(?:-*[^-]){', STR(((246 - ?templateMotifSequenceMatchBeginPositionP12474149) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1160) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12474MF_04132150, 1, (STRLEN(?targetMotifMatchCigarP12474MF_04132150) - STRLEN(REPLACE(?targetMotifMatchCigarP12474MF_04132150, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1160), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12474MF_04132150, 1, (STRLEN(?targetMotifMatchCigarP12474MF_04132150) - STRLEN(REPLACE(?targetMotifMatchCigarP12474MF_04132150, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1160), '}'), '')))), '[^-]', ''))) AS ?step2161) .
BIND(((?step2161 + ?targetMotifMatchRegionMatchBeginPositionMF_04132151) - 1) AS ?thisPositionOn26) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12474MF_04132148, 1, (STRLEN(?templateMotifCigarP12474MF_04132148) - STRLEN(REPLACE(?templateMotifCigarP12474MF_04132148, CONCAT('^(?:-*[^-]){', STR(((247 - ?templateMotifSequenceMatchBeginPositionP12474149) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1162) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12474MF_04132150, 1, (STRLEN(?targetMotifMatchCigarP12474MF_04132150) - STRLEN(REPLACE(?targetMotifMatchCigarP12474MF_04132150, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1162), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12474MF_04132150, 1, (STRLEN(?targetMotifMatchCigarP12474MF_04132150) - STRLEN(REPLACE(?targetMotifMatchCigarP12474MF_04132150, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1162), '}'), '')))), '[^-]', ''))) AS ?step2163) .
BIND(((?step2163 + ?targetMotifMatchRegionMatchBeginPositionMF_04132151) - 1) AS ?thisPositionOn27) .
BIND(?this AS ?pfs1t164) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb24) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse25) .
FILTER (REGEX('[R][EIV]', SUBSTR(?thisSequenceValue, ?thisPositionOn26, (?thisPositionOn27 - ?thisPositionOn26)))) .
BIND(URI(CONCAT(STR(?this), '#MF_04132a23')) AS ?annotation23) .
BIND(?this AS ?pfs22) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch169 faldo:location ?templateMotifSequenceMatchRegionP12473170 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP12473172 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP12473MF_04132165 .
?templateMotifSequenceMatchRegionP12473170 faldo:begin ?templateMotifSequenceMatchBeginP12473171 .
?templateMotifSequenceMatchBeginP12473171 faldo:position ?templateMotifSequenceMatchBeginPositionP12473166 ;
faldo:reference isoform:P12473-1 .
?templateMotifSequenceProfileAlignmentOperationP12473172 edam:has_input signature:MF_04132 ;
rdf:type edam:operation_0300 .
?targetMotifMatch173 faldo:location ?targetMotifMatchRegionMatch174 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04132176 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP12473MF_04132167 .
?targetMotifMatchRegionMatch174 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04132175 .
?targetMotifMatchRegionMatchBeginMF_04132175 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04132168 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04132176 edam:has_input signature:MF_04132 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagdisulf) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12473MF_04132165, 1, (STRLEN(?templateMotifCigarP12473MF_04132165) - STRLEN(REPLACE(?templateMotifCigarP12473MF_04132165, CONCAT('^(?:-*[^-]){', STR(((203 - ?templateMotifSequenceMatchBeginPositionP12473166) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1177) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12473MF_04132167, 1, (STRLEN(?targetMotifMatchCigarP12473MF_04132167) - STRLEN(REPLACE(?targetMotifMatchCigarP12473MF_04132167, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1177), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12473MF_04132167, 1, (STRLEN(?targetMotifMatchCigarP12473MF_04132167) - STRLEN(REPLACE(?targetMotifMatchCigarP12473MF_04132167, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1177), '}'), '')))), '[^-]', ''))) AS ?step2178) .
BIND(((?step2178 + ?targetMotifMatchRegionMatchBeginPositionMF_04132168) - 1) AS ?thisPositionOn32) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12473MF_04132165, 1, (STRLEN(?templateMotifCigarP12473MF_04132165) - STRLEN(REPLACE(?templateMotifCigarP12473MF_04132165, CONCAT('^(?:-*[^-]){', STR(((216 - ?templateMotifSequenceMatchBeginPositionP12473166) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1179) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12473MF_04132167, 1, (STRLEN(?targetMotifMatchCigarP12473MF_04132167) - STRLEN(REPLACE(?targetMotifMatchCigarP12473MF_04132167, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1179), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12473MF_04132167, 1, (STRLEN(?targetMotifMatchCigarP12473MF_04132167) - STRLEN(REPLACE(?targetMotifMatchCigarP12473MF_04132167, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1179), '}'), '')))), '[^-]', ''))) AS ?step2180) .
BIND(((?step2180 + ?targetMotifMatchRegionMatchBeginPositionMF_04132168) - 1) AS ?thisPositionOn33) .
BIND(?this AS ?pfs2t181) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfsb30) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfse31) .
FILTER (REGEX('C[ARNDCQEGHILKMFPSTWYVBZJUOX]*C', SUBSTR(?thisSequenceValue, ?thisPositionOn32, (?thisPositionOn33 - ?thisPositionOn32)))) .
BIND(URI(CONCAT(STR(?this), '#MF_04132a29')) AS ?annotation29) .
BIND(?this AS ?pfs28) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch186 faldo:location ?templateMotifSequenceMatchRegionP12473187 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP12473189 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP12473MF_04132182 .
?templateMotifSequenceMatchRegionP12473187 faldo:begin ?templateMotifSequenceMatchBeginP12473188 .
?templateMotifSequenceMatchBeginP12473188 faldo:position ?templateMotifSequenceMatchBeginPositionP12473183 ;
faldo:reference isoform:P12473-1 .
?templateMotifSequenceProfileAlignmentOperationP12473189 edam:has_input signature:MF_04132 ;
rdf:type edam:operation_0300 .
?targetMotifMatch190 faldo:location ?targetMotifMatchRegionMatch191 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04132193 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP12473MF_04132184 .
?targetMotifMatchRegionMatch191 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04132192 .
?targetMotifMatchRegionMatchBeginMF_04132192 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04132185 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04132193 edam:has_input signature:MF_04132 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagdisulf) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12473MF_04132182, 1, (STRLEN(?templateMotifCigarP12473MF_04132182) - STRLEN(REPLACE(?templateMotifCigarP12473MF_04132182, CONCAT('^(?:-*[^-]){', STR(((318 - ?templateMotifSequenceMatchBeginPositionP12473183) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1194) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12473MF_04132184, 1, (STRLEN(?targetMotifMatchCigarP12473MF_04132184) - STRLEN(REPLACE(?targetMotifMatchCigarP12473MF_04132184, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1194), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12473MF_04132184, 1, (STRLEN(?targetMotifMatchCigarP12473MF_04132184) - STRLEN(REPLACE(?targetMotifMatchCigarP12473MF_04132184, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1194), '}'), '')))), '[^-]', ''))) AS ?step2195) .
BIND(((?step2195 + ?targetMotifMatchRegionMatchBeginPositionMF_04132185) - 1) AS ?thisPositionOn38) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12473MF_04132182, 1, (STRLEN(?templateMotifCigarP12473MF_04132182) - STRLEN(REPLACE(?templateMotifCigarP12473MF_04132182, CONCAT('^(?:-*[^-]){', STR(((380 - ?templateMotifSequenceMatchBeginPositionP12473183) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1196) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12473MF_04132184, 1, (STRLEN(?targetMotifMatchCigarP12473MF_04132184) - STRLEN(REPLACE(?targetMotifMatchCigarP12473MF_04132184, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1196), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12473MF_04132184, 1, (STRLEN(?targetMotifMatchCigarP12473MF_04132184) - STRLEN(REPLACE(?targetMotifMatchCigarP12473MF_04132184, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1196), '}'), '')))), '[^-]', ''))) AS ?step2197) .
BIND(((?step2197 + ?targetMotifMatchRegionMatchBeginPositionMF_04132185) - 1) AS ?thisPositionOn39) .
BIND(?this AS ?pfs2t198) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfsb36) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfse37) .
FILTER (REGEX('C[ARNDCQEGHILKMFPSTWYVBZJUOX]*C', SUBSTR(?thisSequenceValue, ?thisPositionOn38, (?thisPositionOn39 - ?thisPositionOn38)))) .
BIND(URI(CONCAT(STR(?this), '#MF_04132a35')) AS ?annotation35) .
BIND(?this AS ?pfs34) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch203 faldo:location ?templateMotifSequenceMatchRegionP12473204 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP12473206 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP12473MF_04132199 .
?templateMotifSequenceMatchRegionP12473204 faldo:begin ?templateMotifSequenceMatchBeginP12473205 .
?templateMotifSequenceMatchBeginP12473205 faldo:position ?templateMotifSequenceMatchBeginPositionP12473200 ;
faldo:reference isoform:P12473-1 .
?templateMotifSequenceProfileAlignmentOperationP12473206 edam:has_input signature:MF_04132 ;
rdf:type edam:operation_0300 .
?targetMotifMatch207 faldo:location ?targetMotifMatchRegionMatch208 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04132210 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP12473MF_04132201 .
?targetMotifMatchRegionMatch208 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04132209 .
?targetMotifMatchRegionMatchBeginMF_04132209 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04132202 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04132210 edam:has_input signature:MF_04132 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12473MF_04132199, 1, (STRLEN(?templateMotifCigarP12473MF_04132199) - STRLEN(REPLACE(?templateMotifCigarP12473MF_04132199, CONCAT('^(?:-*[^-]){', STR(((101 - ?templateMotifSequenceMatchBeginPositionP12473200) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1211) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12473MF_04132201, 1, (STRLEN(?targetMotifMatchCigarP12473MF_04132201) - STRLEN(REPLACE(?targetMotifMatchCigarP12473MF_04132201, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1211), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12473MF_04132201, 1, (STRLEN(?targetMotifMatchCigarP12473MF_04132201) - STRLEN(REPLACE(?targetMotifMatchCigarP12473MF_04132201, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1211), '}'), '')))), '[^-]', ''))) AS ?step2212) .
BIND(((?step2212 + ?targetMotifMatchRegionMatchBeginPositionMF_04132202) - 1) AS ?thisPositionOn44) .
BIND(?thisPositionOn44 AS ?thisPositionOn45) .
BIND(?this AS ?pfs3t213) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfsb42) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfse43) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn44, 1) = 'R')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12473MF_04132199, 1, (STRLEN(?templateMotifCigarP12473MF_04132199) - STRLEN(REPLACE(?templateMotifCigarP12473MF_04132199, CONCAT('^(?:-*[^-]){', STR(((190 - ?templateMotifSequenceMatchBeginPositionP12473200) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1214) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12473MF_04132201, 1, (STRLEN(?targetMotifMatchCigarP12473MF_04132201) - STRLEN(REPLACE(?targetMotifMatchCigarP12473MF_04132201, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1214), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12473MF_04132201, 1, (STRLEN(?targetMotifMatchCigarP12473MF_04132201) - STRLEN(REPLACE(?targetMotifMatchCigarP12473MF_04132201, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1214), '}'), '')))), '[^-]', ''))) AS ?step2215) .
BIND(((?step2215 + ?targetMotifMatchRegionMatchBeginPositionMF_04132202) - 1) AS ?thisPositionOn49) .
BIND(?thisPositionOn49 AS ?thisPositionOn50) .
BIND(?this AS ?pfs3t216) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfsb47) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfse48) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn49, 1) = 'S')) .
BIND(?this AS ?pfs40) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch221 faldo:location ?templateMotifSequenceMatchRegionP12473222 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP12473224 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP12473MF_04132217 .
?templateMotifSequenceMatchRegionP12473222 faldo:begin ?templateMotifSequenceMatchBeginP12473223 .
?templateMotifSequenceMatchBeginP12473223 faldo:position ?templateMotifSequenceMatchBeginPositionP12473218 ;
faldo:reference isoform:P12473-1 .
?templateMotifSequenceProfileAlignmentOperationP12473224 edam:has_input signature:MF_04132 ;
rdf:type edam:operation_0300 .
?targetMotifMatch225 faldo:location ?targetMotifMatchRegionMatch226 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04132228 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP12473MF_04132219 .
?targetMotifMatchRegionMatch226 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04132227 .
?targetMotifMatchRegionMatchBeginMF_04132227 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04132220 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04132228 edam:has_input signature:MF_04132 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagcleavage1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12473MF_04132217, 1, (STRLEN(?templateMotifCigarP12473MF_04132217) - STRLEN(REPLACE(?templateMotifCigarP12473MF_04132217, CONCAT('^(?:-*[^-]){', STR(((231 - ?templateMotifSequenceMatchBeginPositionP12473218) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1229) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12473MF_04132219, 1, (STRLEN(?targetMotifMatchCigarP12473MF_04132219) - STRLEN(REPLACE(?targetMotifMatchCigarP12473MF_04132219, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1229), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12473MF_04132219, 1, (STRLEN(?targetMotifMatchCigarP12473MF_04132219) - STRLEN(REPLACE(?targetMotifMatchCigarP12473MF_04132219, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1229), '}'), '')))), '[^-]', ''))) AS ?step2230) .
BIND(((?step2230 + ?targetMotifMatchRegionMatchBeginPositionMF_04132220) - 1) AS ?thisPositionOn55) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12473MF_04132217, 1, (STRLEN(?templateMotifCigarP12473MF_04132217) - STRLEN(REPLACE(?templateMotifCigarP12473MF_04132217, CONCAT('^(?:-*[^-]){', STR(((232 - ?templateMotifSequenceMatchBeginPositionP12473218) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1231) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12473MF_04132219, 1, (STRLEN(?targetMotifMatchCigarP12473MF_04132219) - STRLEN(REPLACE(?targetMotifMatchCigarP12473MF_04132219, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1231), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12473MF_04132219, 1, (STRLEN(?targetMotifMatchCigarP12473MF_04132219) - STRLEN(REPLACE(?targetMotifMatchCigarP12473MF_04132219, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1231), '}'), '')))), '[^-]', ''))) AS ?step2232) .
BIND(((?step2232 + ?targetMotifMatchRegionMatchBeginPositionMF_04132220) - 1) AS ?thisPositionOn56) .
BIND(?this AS ?pfs4t233) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfsb53) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfse54) .
FILTER (REGEX('[RT][NY]', SUBSTR(?thisSequenceValue, ?thisPositionOn55, (?thisPositionOn56 - ?thisPositionOn55)))) .
BIND(URI(CONCAT(STR(?this), '#MF_04132a52')) AS ?annotation52) .
BIND(?this AS ?pfs51) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch238 faldo:location ?templateMotifSequenceMatchRegionP12473239 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP12473241 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP12473MF_04132234 .
?templateMotifSequenceMatchRegionP12473239 faldo:begin ?templateMotifSequenceMatchBeginP12473240 .
?templateMotifSequenceMatchBeginP12473240 faldo:position ?templateMotifSequenceMatchBeginPositionP12473235 ;
faldo:reference isoform:P12473-1 .
?templateMotifSequenceProfileAlignmentOperationP12473241 edam:has_input signature:MF_04132 ;
rdf:type edam:operation_0300 .
?targetMotifMatch242 faldo:location ?targetMotifMatchRegionMatch243 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04132245 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP12473MF_04132236 .
?targetMotifMatchRegionMatch243 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04132244 .
?targetMotifMatchRegionMatchBeginMF_04132244 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04132237 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04132245 edam:has_input signature:MF_04132 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagcleavage2) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12473MF_04132234, 1, (STRLEN(?templateMotifCigarP12473MF_04132234) - STRLEN(REPLACE(?templateMotifCigarP12473MF_04132234, CONCAT('^(?:-*[^-]){', STR(((247 - ?templateMotifSequenceMatchBeginPositionP12473235) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1246) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12473MF_04132236, 1, (STRLEN(?targetMotifMatchCigarP12473MF_04132236) - STRLEN(REPLACE(?targetMotifMatchCigarP12473MF_04132236, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1246), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12473MF_04132236, 1, (STRLEN(?targetMotifMatchCigarP12473MF_04132236) - STRLEN(REPLACE(?targetMotifMatchCigarP12473MF_04132236, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1246), '}'), '')))), '[^-]', ''))) AS ?step2247) .
BIND(((?step2247 + ?targetMotifMatchRegionMatchBeginPositionMF_04132237) - 1) AS ?thisPositionOn61) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12473MF_04132234, 1, (STRLEN(?templateMotifCigarP12473MF_04132234) - STRLEN(REPLACE(?templateMotifCigarP12473MF_04132234, CONCAT('^(?:-*[^-]){', STR(((248 - ?templateMotifSequenceMatchBeginPositionP12473235) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1248) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12473MF_04132236, 1, (STRLEN(?targetMotifMatchCigarP12473MF_04132236) - STRLEN(REPLACE(?targetMotifMatchCigarP12473MF_04132236, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1248), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12473MF_04132236, 1, (STRLEN(?targetMotifMatchCigarP12473MF_04132236) - STRLEN(REPLACE(?targetMotifMatchCigarP12473MF_04132236, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1248), '}'), '')))), '[^-]', ''))) AS ?step2249) .
BIND(((?step2249 + ?targetMotifMatchRegionMatchBeginPositionMF_04132237) - 1) AS ?thisPositionOn62) .
BIND(?this AS ?pfs5t250) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfsb59) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfse60) .
FILTER (REGEX('[KR][AV]', SUBSTR(?thisSequenceValue, ?thisPositionOn61, (?thisPositionOn62 - ?thisPositionOn61)))) .
BIND(URI(CONCAT(STR(?this), '#MF_04132a58')) AS ?annotation58) .
BIND(?this AS ?pfs57) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch255 faldo:location ?templateMotifSequenceMatchRegionP12473256 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP12473258 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP12473MF_04132251 .
?templateMotifSequenceMatchRegionP12473256 faldo:begin ?templateMotifSequenceMatchBeginP12473257 .
?templateMotifSequenceMatchBeginP12473257 faldo:position ?templateMotifSequenceMatchBeginPositionP12473252 ;
faldo:reference isoform:P12473-1 .
?templateMotifSequenceProfileAlignmentOperationP12473258 edam:has_input signature:MF_04132 ;
rdf:type edam:operation_0300 .
?targetMotifMatch259 faldo:location ?targetMotifMatchRegionMatch260 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04132262 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP12473MF_04132253 .
?targetMotifMatchRegionMatch260 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04132261 .
?targetMotifMatchRegionMatchBeginMF_04132261 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04132254 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04132262 edam:has_input signature:MF_04132 ;
rdf:type edam:operation_0300 .
BIND(1 AS ?thisPositionOn67) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn68) .
BIND(?this AS ?pfs6t263) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfsb65) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn68))) AS ?pfse66) .
FILTER ((BOUND(?thisPositionOn67) && BOUND(?thisPositionOn68))) .
BIND(URI(CONCAT(STR(?this), '#MF_04132a64')) AS ?annotation64) .
BIND(?this AS ?pfs63) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch268 faldo:location ?templateMotifSequenceMatchRegionP12473269 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP12473271 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP12473MF_04132264 .
?templateMotifSequenceMatchRegionP12473269 faldo:begin ?templateMotifSequenceMatchBeginP12473270 .
?templateMotifSequenceMatchBeginP12473270 faldo:position ?templateMotifSequenceMatchBeginPositionP12473265 ;
faldo:reference isoform:P12473-1 .
?templateMotifSequenceProfileAlignmentOperationP12473271 edam:has_input signature:MF_04132 ;
rdf:type edam:operation_0300 .
?targetMotifMatch272 faldo:location ?targetMotifMatchRegionMatch273 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04132275 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP12473MF_04132266 .
?targetMotifMatchRegionMatch273 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04132274 .
?targetMotifMatchRegionMatchBeginMF_04132274 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04132267 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04132275 edam:has_input signature:MF_04132 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12473MF_04132264, 1, (STRLEN(?templateMotifCigarP12473MF_04132264) - STRLEN(REPLACE(?templateMotifCigarP12473MF_04132264, CONCAT('^(?:-*[^-]){', STR(((389 - ?templateMotifSequenceMatchBeginPositionP12473265) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1276) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12473MF_04132266, 1, (STRLEN(?targetMotifMatchCigarP12473MF_04132266) - STRLEN(REPLACE(?targetMotifMatchCigarP12473MF_04132266, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1276), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12473MF_04132266, 1, (STRLEN(?targetMotifMatchCigarP12473MF_04132266) - STRLEN(REPLACE(?targetMotifMatchCigarP12473MF_04132266, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1276), '}'), '')))), '[^-]', ''))) AS ?step2277) .
BIND(((?step2277 + ?targetMotifMatchRegionMatchBeginPositionMF_04132267) - 1) AS ?thisPositionOn73) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12473MF_04132264, 1, (STRLEN(?templateMotifCigarP12473MF_04132264) - STRLEN(REPLACE(?templateMotifCigarP12473MF_04132264, CONCAT('^(?:-*[^-]){', STR(((409 - ?templateMotifSequenceMatchBeginPositionP12473265) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1278) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12473MF_04132266, 1, (STRLEN(?targetMotifMatchCigarP12473MF_04132266) - STRLEN(REPLACE(?targetMotifMatchCigarP12473MF_04132266, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1278), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12473MF_04132266, 1, (STRLEN(?targetMotifMatchCigarP12473MF_04132266) - STRLEN(REPLACE(?targetMotifMatchCigarP12473MF_04132266, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1278), '}'), '')))), '[^-]', ''))) AS ?step2279) .
BIND(((?step2279 + ?targetMotifMatchRegionMatchBeginPositionMF_04132267) - 1) AS ?thisPositionOn74) .
BIND(?this AS ?pfs6t280) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfsb71) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn74))) AS ?pfse72) .
FILTER ((BOUND(?thisPositionOn73) && BOUND(?thisPositionOn74))) .
BIND(URI(CONCAT(STR(?this), '#MF_04132a70')) AS ?annotation70) .
BIND(?this AS ?pfs69) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch285 faldo:location ?templateMotifSequenceMatchRegionP12473286 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP12473288 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP12473MF_04132281 .
?templateMotifSequenceMatchRegionP12473286 faldo:begin ?templateMotifSequenceMatchBeginP12473287 .
?templateMotifSequenceMatchBeginP12473287 faldo:position ?templateMotifSequenceMatchBeginPositionP12473282 ;
faldo:reference isoform:P12473-1 .
?templateMotifSequenceProfileAlignmentOperationP12473288 edam:has_input signature:MF_04132 ;
rdf:type edam:operation_0300 .
?targetMotifMatch289 faldo:location ?targetMotifMatchRegionMatch290 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04132292 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP12473MF_04132283 .
?targetMotifMatchRegionMatch290 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04132291 .
?targetMotifMatchRegionMatchBeginMF_04132291 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04132284 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04132292 edam:has_input signature:MF_04132 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12473MF_04132281, 1, (STRLEN(?templateMotifCigarP12473MF_04132281) - STRLEN(REPLACE(?templateMotifCigarP12473MF_04132281, CONCAT('^(?:-*[^-]){', STR(((65 - ?templateMotifSequenceMatchBeginPositionP12473282) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1293) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12473MF_04132283, 1, (STRLEN(?targetMotifMatchCigarP12473MF_04132283) - STRLEN(REPLACE(?targetMotifMatchCigarP12473MF_04132283, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1293), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12473MF_04132283, 1, (STRLEN(?targetMotifMatchCigarP12473MF_04132283) - STRLEN(REPLACE(?targetMotifMatchCigarP12473MF_04132283, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1293), '}'), '')))), '[^-]', ''))) AS ?step2294) .
BIND(((?step2294 + ?targetMotifMatchRegionMatchBeginPositionMF_04132284) - 1) AS ?thisPositionOn79) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12473MF_04132281, 1, (STRLEN(?templateMotifCigarP12473MF_04132281) - STRLEN(REPLACE(?templateMotifCigarP12473MF_04132281, CONCAT('^(?:-*[^-]){', STR(((224 - ?templateMotifSequenceMatchBeginPositionP12473282) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1295) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12473MF_04132283, 1, (STRLEN(?targetMotifMatchCigarP12473MF_04132283) - STRLEN(REPLACE(?targetMotifMatchCigarP12473MF_04132283, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1295), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12473MF_04132283, 1, (STRLEN(?targetMotifMatchCigarP12473MF_04132283) - STRLEN(REPLACE(?targetMotifMatchCigarP12473MF_04132283, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1295), '}'), '')))), '[^-]', ''))) AS ?step2296) .
BIND(((?step2296 + ?targetMotifMatchRegionMatchBeginPositionMF_04132284) - 1) AS ?thisPositionOn80) .
BIND(?this AS ?pfs6t297) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn79))) AS ?pfsb77) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn80))) AS ?pfse78) .
FILTER ((BOUND(?thisPositionOn79) && BOUND(?thisPositionOn80))) .
BIND(URI(CONCAT(STR(?this), '#MF_04132a76')) AS ?annotation76) .
BIND(?this AS ?pfs75) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch302 faldo:location ?templateMotifSequenceMatchRegionP12473303 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP12473305 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP12473MF_04132298 .
?templateMotifSequenceMatchRegionP12473303 faldo:begin ?templateMotifSequenceMatchBeginP12473304 .
?templateMotifSequenceMatchBeginP12473304 faldo:position ?templateMotifSequenceMatchBeginPositionP12473299 ;
faldo:reference isoform:P12473-1 .
?templateMotifSequenceProfileAlignmentOperationP12473305 edam:has_input signature:MF_04132 ;
rdf:type edam:operation_0300 .
?targetMotifMatch306 faldo:location ?targetMotifMatchRegionMatch307 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04132309 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP12473MF_04132300 .
?targetMotifMatchRegionMatch307 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04132308 .
?targetMotifMatchRegionMatchBeginMF_04132308 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04132301 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04132309 edam:has_input signature:MF_04132 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12473MF_04132298, 1, (STRLEN(?templateMotifCigarP12473MF_04132298) - STRLEN(REPLACE(?templateMotifCigarP12473MF_04132298, CONCAT('^(?:-*[^-]){', STR(((248 - ?templateMotifSequenceMatchBeginPositionP12473299) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1310) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12473MF_04132300, 1, (STRLEN(?targetMotifMatchCigarP12473MF_04132300) - STRLEN(REPLACE(?targetMotifMatchCigarP12473MF_04132300, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1310), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12473MF_04132300, 1, (STRLEN(?targetMotifMatchCigarP12473MF_04132300) - STRLEN(REPLACE(?targetMotifMatchCigarP12473MF_04132300, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1310), '}'), '')))), '[^-]', ''))) AS ?step2311) .
BIND(((?step2311 + ?targetMotifMatchRegionMatchBeginPositionMF_04132301) - 1) AS ?thisPositionOn85) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12473MF_04132298, 1, (STRLEN(?templateMotifCigarP12473MF_04132298) - STRLEN(REPLACE(?templateMotifCigarP12473MF_04132298, CONCAT('^(?:-*[^-]){', STR(((479 - ?templateMotifSequenceMatchBeginPositionP12473299) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1312) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12473MF_04132300, 1, (STRLEN(?targetMotifMatchCigarP12473MF_04132300) - STRLEN(REPLACE(?targetMotifMatchCigarP12473MF_04132300, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1312), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12473MF_04132300, 1, (STRLEN(?targetMotifMatchCigarP12473MF_04132300) - STRLEN(REPLACE(?targetMotifMatchCigarP12473MF_04132300, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1312), '}'), '')))), '[^-]', ''))) AS ?step2313) .
BIND(((?step2313 + ?targetMotifMatchRegionMatchBeginPositionMF_04132301) - 1) AS ?thisPositionOn86) .
BIND(?this AS ?pfs6t314) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn85))) AS ?pfsb83) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn86))) AS ?pfse84) .
FILTER ((BOUND(?thisPositionOn85) && BOUND(?thisPositionOn86))) .
BIND(URI(CONCAT(STR(?this), '#MF_04132a82')) AS ?annotation82) .
BIND(?this AS ?pfs81) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch319 faldo:location ?templateMotifSequenceMatchRegionP12473320 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP12473322 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP12473MF_04132315 .
?templateMotifSequenceMatchRegionP12473320 faldo:begin ?templateMotifSequenceMatchBeginP12473321 .
?templateMotifSequenceMatchBeginP12473321 faldo:position ?templateMotifSequenceMatchBeginPositionP12473316 ;
faldo:reference isoform:P12473-1 .
?templateMotifSequenceProfileAlignmentOperationP12473322 edam:has_input signature:MF_04132 ;
rdf:type edam:operation_0300 .
?targetMotifMatch323 faldo:location ?targetMotifMatchRegionMatch324 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04132326 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP12473MF_04132317 .
?targetMotifMatchRegionMatch324 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04132325 .
?targetMotifMatchRegionMatchBeginMF_04132325 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04132318 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04132326 edam:has_input signature:MF_04132 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12473MF_04132315, 1, (STRLEN(?templateMotifCigarP12473MF_04132315) - STRLEN(REPLACE(?templateMotifCigarP12473MF_04132315, CONCAT('^(?:-*[^-]){', STR(((389 - ?templateMotifSequenceMatchBeginPositionP12473316) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1327) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12473MF_04132317, 1, (STRLEN(?targetMotifMatchCigarP12473MF_04132317) - STRLEN(REPLACE(?targetMotifMatchCigarP12473MF_04132317, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1327), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12473MF_04132317, 1, (STRLEN(?targetMotifMatchCigarP12473MF_04132317) - STRLEN(REPLACE(?targetMotifMatchCigarP12473MF_04132317, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1327), '}'), '')))), '[^-]', ''))) AS ?step2328) .
BIND(((?step2328 + ?targetMotifMatchRegionMatchBeginPositionMF_04132318) - 1) AS ?thisPositionOn91) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12473MF_04132315, 1, (STRLEN(?templateMotifCigarP12473MF_04132315) - STRLEN(REPLACE(?templateMotifCigarP12473MF_04132315, CONCAT('^(?:-*[^-]){', STR(((409 - ?templateMotifSequenceMatchBeginPositionP12473316) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1329) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12473MF_04132317, 1, (STRLEN(?targetMotifMatchCigarP12473MF_04132317) - STRLEN(REPLACE(?targetMotifMatchCigarP12473MF_04132317, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1329), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12473MF_04132317, 1, (STRLEN(?targetMotifMatchCigarP12473MF_04132317) - STRLEN(REPLACE(?targetMotifMatchCigarP12473MF_04132317, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1329), '}'), '')))), '[^-]', ''))) AS ?step2330) .
BIND(((?step2330 + ?targetMotifMatchRegionMatchBeginPositionMF_04132318) - 1) AS ?thisPositionOn92) .
BIND(?this AS ?pfs6t331) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn91))) AS ?pfsb89) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn92))) AS ?pfse90) .
FILTER ((BOUND(?thisPositionOn91) && BOUND(?thisPositionOn92))) .
BIND(URI(CONCAT(STR(?this), '#MF_04132a88')) AS ?annotation88) .
BIND(?this AS ?pfs87) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch336 faldo:location ?templateMotifSequenceMatchRegionP12473337 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP12473339 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP12473MF_04132332 .
?templateMotifSequenceMatchRegionP12473337 faldo:begin ?templateMotifSequenceMatchBeginP12473338 .
?templateMotifSequenceMatchBeginP12473338 faldo:position ?templateMotifSequenceMatchBeginPositionP12473333 ;
faldo:reference isoform:P12473-1 .
?templateMotifSequenceProfileAlignmentOperationP12473339 edam:has_input signature:MF_04132 ;
rdf:type edam:operation_0300 .
?targetMotifMatch340 faldo:location ?targetMotifMatchRegionMatch341 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04132343 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP12473MF_04132334 .
?targetMotifMatchRegionMatch341 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04132342 .
?targetMotifMatchRegionMatchBeginMF_04132342 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04132335 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04132343 edam:has_input signature:MF_04132 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12473MF_04132332, 1, (STRLEN(?templateMotifCigarP12473MF_04132332) - STRLEN(REPLACE(?templateMotifCigarP12473MF_04132332, CONCAT('^(?:-*[^-]){', STR(((510 - ?templateMotifSequenceMatchBeginPositionP12473333) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1344) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12473MF_04132334, 1, (STRLEN(?targetMotifMatchCigarP12473MF_04132334) - STRLEN(REPLACE(?targetMotifMatchCigarP12473MF_04132334, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1344), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12473MF_04132334, 1, (STRLEN(?targetMotifMatchCigarP12473MF_04132334) - STRLEN(REPLACE(?targetMotifMatchCigarP12473MF_04132334, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1344), '}'), '')))), '[^-]', ''))) AS ?step2345) .
BIND(((?step2345 + ?targetMotifMatchRegionMatchBeginPositionMF_04132335) - 1) AS ?thisPositionOn97) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12473MF_04132332, 1, (STRLEN(?templateMotifCigarP12473MF_04132332) - STRLEN(REPLACE(?templateMotifCigarP12473MF_04132332, CONCAT('^(?:-*[^-]){', STR(((776 - ?templateMotifSequenceMatchBeginPositionP12473333) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1346) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12473MF_04132334, 1, (STRLEN(?targetMotifMatchCigarP12473MF_04132334) - STRLEN(REPLACE(?targetMotifMatchCigarP12473MF_04132334, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1346), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12473MF_04132334, 1, (STRLEN(?targetMotifMatchCigarP12473MF_04132334) - STRLEN(REPLACE(?targetMotifMatchCigarP12473MF_04132334, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1346), '}'), '')))), '[^-]', ''))) AS ?step2347) .
BIND(((?step2347 + ?targetMotifMatchRegionMatchBeginPositionMF_04132335) - 1) AS ?thisPositionOn98) .
BIND(?this AS ?pfs6t348) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn97))) AS ?pfsb95) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn98))) AS ?pfse96) .
FILTER ((BOUND(?thisPositionOn97) && BOUND(?thisPositionOn98))) .
BIND(URI(CONCAT(STR(?this), '#MF_04132a94')) AS ?annotation94) .
BIND(?this AS ?pfs93) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch353 faldo:location ?templateMotifSequenceMatchRegionP12473354 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP12473356 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP12473MF_04132349 .
?templateMotifSequenceMatchRegionP12473354 faldo:begin ?templateMotifSequenceMatchBeginP12473355 .
?templateMotifSequenceMatchBeginP12473355 faldo:position ?templateMotifSequenceMatchBeginPositionP12473350 ;
faldo:reference isoform:P12473-1 .
?templateMotifSequenceProfileAlignmentOperationP12473356 edam:has_input signature:MF_04132 ;
rdf:type edam:operation_0300 .
?targetMotifMatch357 faldo:location ?targetMotifMatchRegionMatch358 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04132360 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP12473MF_04132351 .
?targetMotifMatchRegionMatch358 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04132359 .
?targetMotifMatchRegionMatchBeginMF_04132359 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04132352 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04132360 edam:has_input signature:MF_04132 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12473MF_04132349, 1, (STRLEN(?templateMotifCigarP12473MF_04132349) - STRLEN(REPLACE(?templateMotifCigarP12473MF_04132349, CONCAT('^(?:-*[^-]){', STR(((241 - ?templateMotifSequenceMatchBeginPositionP12473350) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1361) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12473MF_04132351, 1, (STRLEN(?targetMotifMatchCigarP12473MF_04132351) - STRLEN(REPLACE(?targetMotifMatchCigarP12473MF_04132351, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1361), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12473MF_04132351, 1, (STRLEN(?targetMotifMatchCigarP12473MF_04132351) - STRLEN(REPLACE(?targetMotifMatchCigarP12473MF_04132351, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1361), '}'), '')))), '[^-]', ''))) AS ?step2362) .
BIND(((?step2362 + ?targetMotifMatchRegionMatchBeginPositionMF_04132352) - 1) AS ?thisPositionOn103) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12473MF_04132349, 1, (STRLEN(?templateMotifCigarP12473MF_04132349) - STRLEN(REPLACE(?templateMotifCigarP12473MF_04132349, CONCAT('^(?:-*[^-]){', STR(((242 - ?templateMotifSequenceMatchBeginPositionP12473350) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1363) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12473MF_04132351, 1, (STRLEN(?targetMotifMatchCigarP12473MF_04132351) - STRLEN(REPLACE(?targetMotifMatchCigarP12473MF_04132351, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1363), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12473MF_04132351, 1, (STRLEN(?targetMotifMatchCigarP12473MF_04132351) - STRLEN(REPLACE(?targetMotifMatchCigarP12473MF_04132351, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1363), '}'), '')))), '[^-]', ''))) AS ?step2364) .
BIND(((?step2364 + ?targetMotifMatchRegionMatchBeginPositionMF_04132352) - 1) AS ?thisPositionOn104) .
BIND(?this AS ?pfs6t365) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn103))) AS ?pfsb101) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn104))) AS ?pfse102) .
FILTER (REGEX('R[NASTDEQ]', SUBSTR(?thisSequenceValue, ?thisPositionOn103, (?thisPositionOn104 - ?thisPositionOn103)))) .
BIND(URI(CONCAT(STR(?this), '#MF_04132a100')) AS ?annotation100) .
BIND(?this AS ?pfs99) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch370 faldo:location ?templateMotifSequenceMatchRegionP12473371 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP12473373 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP12473MF_04132366 .
?templateMotifSequenceMatchRegionP12473371 faldo:begin ?templateMotifSequenceMatchBeginP12473372 .
?templateMotifSequenceMatchBeginP12473372 faldo:position ?templateMotifSequenceMatchBeginPositionP12473367 ;
faldo:reference isoform:P12473-1 .
?templateMotifSequenceProfileAlignmentOperationP12473373 edam:has_input signature:MF_04132 ;
rdf:type edam:operation_0300 .
?targetMotifMatch374 faldo:location ?targetMotifMatchRegionMatch375 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04132377 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP12473MF_04132368 .
?targetMotifMatchRegionMatch375 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04132376 .
?targetMotifMatchRegionMatchBeginMF_04132376 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04132369 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04132377 edam:has_input signature:MF_04132 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12473MF_04132366, 1, (STRLEN(?templateMotifCigarP12473MF_04132366) - STRLEN(REPLACE(?templateMotifCigarP12473MF_04132366, CONCAT('^(?:-*[^-]){', STR(((308 - ?templateMotifSequenceMatchBeginPositionP12473367) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1378) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12473MF_04132368, 1, (STRLEN(?targetMotifMatchCigarP12473MF_04132368) - STRLEN(REPLACE(?targetMotifMatchCigarP12473MF_04132368, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1378), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12473MF_04132368, 1, (STRLEN(?targetMotifMatchCigarP12473MF_04132368) - STRLEN(REPLACE(?targetMotifMatchCigarP12473MF_04132368, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1378), '}'), '')))), '[^-]', ''))) AS ?step2379) .
BIND(((?step2379 + ?targetMotifMatchRegionMatchBeginPositionMF_04132369) - 1) AS ?thisPositionOn109) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12473MF_04132366, 1, (STRLEN(?templateMotifCigarP12473MF_04132366) - STRLEN(REPLACE(?templateMotifCigarP12473MF_04132366, CONCAT('^(?:-*[^-]){', STR(((310 - ?templateMotifSequenceMatchBeginPositionP12473367) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1380) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12473MF_04132368, 1, (STRLEN(?targetMotifMatchCigarP12473MF_04132368) - STRLEN(REPLACE(?targetMotifMatchCigarP12473MF_04132368, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1380), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12473MF_04132368, 1, (STRLEN(?targetMotifMatchCigarP12473MF_04132368) - STRLEN(REPLACE(?targetMotifMatchCigarP12473MF_04132368, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1380), '}'), '')))), '[^-]', ''))) AS ?step2381) .
BIND(((?step2381 + ?targetMotifMatchRegionMatchBeginPositionMF_04132369) - 1) AS ?thisPositionOn110) .
BIND(?this AS ?pfs6t382) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn109))) AS ?pfsb107) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn110))) AS ?pfse108) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn109, (?thisPositionOn110 - ?thisPositionOn109)) = 'DGE')) .
BIND(URI(CONCAT(STR(?this), '#MF_04132a106')) AS ?annotation106) .
BIND(?this AS ?pfs105) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch387 faldo:location ?templateMotifSequenceMatchRegionP12473388 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP12473390 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP12473MF_04132383 .
?templateMotifSequenceMatchRegionP12473388 faldo:begin ?templateMotifSequenceMatchBeginP12473389 .
?templateMotifSequenceMatchBeginP12473389 faldo:position ?templateMotifSequenceMatchBeginPositionP12473384 ;
faldo:reference isoform:P12473-1 .
?templateMotifSequenceProfileAlignmentOperationP12473390 edam:has_input signature:MF_04132 ;
rdf:type edam:operation_0300 .
?targetMotifMatch391 faldo:location ?targetMotifMatchRegionMatch392 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04132394 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP12473MF_04132385 .
?targetMotifMatchRegionMatch392 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04132393 .
?targetMotifMatchRegionMatchBeginMF_04132393 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04132386 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04132394 edam:has_input signature:MF_04132 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12473MF_04132383, 1, (STRLEN(?templateMotifCigarP12473MF_04132383) - STRLEN(REPLACE(?templateMotifCigarP12473MF_04132383, CONCAT('^(?:-*[^-]){', STR(((448 - ?templateMotifSequenceMatchBeginPositionP12473384) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1395) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12473MF_04132385, 1, (STRLEN(?targetMotifMatchCigarP12473MF_04132385) - STRLEN(REPLACE(?targetMotifMatchCigarP12473MF_04132385, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1395), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12473MF_04132385, 1, (STRLEN(?targetMotifMatchCigarP12473MF_04132385) - STRLEN(REPLACE(?targetMotifMatchCigarP12473MF_04132385, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1395), '}'), '')))), '[^-]', ''))) AS ?step2396) .
BIND(((?step2396 + ?targetMotifMatchRegionMatchBeginPositionMF_04132386) - 1) AS ?thisPositionOn115) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12473MF_04132383, 1, (STRLEN(?templateMotifCigarP12473MF_04132383) - STRLEN(REPLACE(?templateMotifCigarP12473MF_04132383, CONCAT('^(?:-*[^-]){', STR(((450 - ?templateMotifSequenceMatchBeginPositionP12473384) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1397) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12473MF_04132385, 1, (STRLEN(?targetMotifMatchCigarP12473MF_04132385) - STRLEN(REPLACE(?targetMotifMatchCigarP12473MF_04132385, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1397), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12473MF_04132385, 1, (STRLEN(?targetMotifMatchCigarP12473MF_04132385) - STRLEN(REPLACE(?targetMotifMatchCigarP12473MF_04132385, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1397), '}'), '')))), '[^-]', ''))) AS ?step2398) .
BIND(((?step2398 + ?targetMotifMatchRegionMatchBeginPositionMF_04132386) - 1) AS ?thisPositionOn116) .
BIND(?this AS ?pfs6t399) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn115))) AS ?pfsb113) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn116))) AS ?pfse114) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn115, (?thisPositionOn116 - ?thisPositionOn115)) = 'YGL')) .
BIND(URI(CONCAT(STR(?this), '#MF_04132a112')) AS ?annotation112) .
BIND(?this AS ?pfs111) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch404 faldo:location ?templateMotifSequenceMatchRegionP12473405 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP12473407 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP12473MF_04132400 .
?templateMotifSequenceMatchRegionP12473405 faldo:begin ?templateMotifSequenceMatchBeginP12473406 .
?templateMotifSequenceMatchBeginP12473406 faldo:position ?templateMotifSequenceMatchBeginPositionP12473401 ;
faldo:reference isoform:P12473-1 .
?templateMotifSequenceProfileAlignmentOperationP12473407 edam:has_input signature:MF_04132 ;
rdf:type edam:operation_0300 .
?targetMotifMatch408 faldo:location ?targetMotifMatchRegionMatch409 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04132411 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP12473MF_04132402 .
?targetMotifMatchRegionMatch409 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04132410 .
?targetMotifMatchRegionMatchBeginMF_04132410 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04132403 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04132411 edam:has_input signature:MF_04132 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12473MF_04132400, 1, (STRLEN(?templateMotifCigarP12473MF_04132400) - STRLEN(REPLACE(?templateMotifCigarP12473MF_04132400, CONCAT('^(?:-*[^-]){', STR(((644 - ?templateMotifSequenceMatchBeginPositionP12473401) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1412) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12473MF_04132402, 1, (STRLEN(?targetMotifMatchCigarP12473MF_04132402) - STRLEN(REPLACE(?targetMotifMatchCigarP12473MF_04132402, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1412), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12473MF_04132402, 1, (STRLEN(?targetMotifMatchCigarP12473MF_04132402) - STRLEN(REPLACE(?targetMotifMatchCigarP12473MF_04132402, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1412), '}'), '')))), '[^-]', ''))) AS ?step2413) .
BIND(((?step2413 + ?targetMotifMatchRegionMatchBeginPositionMF_04132403) - 1) AS ?thisPositionOn121) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12473MF_04132400, 1, (STRLEN(?templateMotifCigarP12473MF_04132400) - STRLEN(REPLACE(?templateMotifCigarP12473MF_04132400, CONCAT('^(?:-*[^-]){', STR(((646 - ?templateMotifSequenceMatchBeginPositionP12473401) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1414) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12473MF_04132402, 1, (STRLEN(?targetMotifMatchCigarP12473MF_04132402) - STRLEN(REPLACE(?targetMotifMatchCigarP12473MF_04132402, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1414), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12473MF_04132402, 1, (STRLEN(?targetMotifMatchCigarP12473MF_04132402) - STRLEN(REPLACE(?targetMotifMatchCigarP12473MF_04132402, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1414), '}'), '')))), '[^-]', ''))) AS ?step2415) .
BIND(((?step2415 + ?targetMotifMatchRegionMatchBeginPositionMF_04132403) - 1) AS ?thisPositionOn122) .
BIND(?this AS ?pfs6t416) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn121))) AS ?pfsb119) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn122))) AS ?pfse120) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn121, (?thisPositionOn122 - ?thisPositionOn121)) = 'KID')) .
BIND(URI(CONCAT(STR(?this), '#MF_04132a118')) AS ?annotation118) .
BIND(?this AS ?pfs117) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch421 faldo:location ?templateMotifSequenceMatchRegionP12474422 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP12474424 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP12474MF_04132417 .
?templateMotifSequenceMatchRegionP12474422 faldo:begin ?templateMotifSequenceMatchBeginP12474423 .
?templateMotifSequenceMatchBeginP12474423 faldo:position ?templateMotifSequenceMatchBeginPositionP12474418 ;
faldo:reference isoform:P12474-1 .
?templateMotifSequenceProfileAlignmentOperationP12474424 edam:has_input signature:MF_04132 ;
rdf:type edam:operation_0300 .
?targetMotifMatch425 faldo:location ?targetMotifMatchRegionMatch426 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04132428 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP12474MF_04132419 .
?targetMotifMatchRegionMatch426 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04132427 .
?targetMotifMatchRegionMatchBeginMF_04132427 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04132420 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04132428 edam:has_input signature:MF_04132 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12474MF_04132417, 1, (STRLEN(?templateMotifCigarP12474MF_04132417) - STRLEN(REPLACE(?templateMotifCigarP12474MF_04132417, CONCAT('^(?:-*[^-]){', STR(((247 - ?templateMotifSequenceMatchBeginPositionP12474418) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1429) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12474MF_04132419, 1, (STRLEN(?targetMotifMatchCigarP12474MF_04132419) - STRLEN(REPLACE(?targetMotifMatchCigarP12474MF_04132419, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1429), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12474MF_04132419, 1, (STRLEN(?targetMotifMatchCigarP12474MF_04132419) - STRLEN(REPLACE(?targetMotifMatchCigarP12474MF_04132419, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1429), '}'), '')))), '[^-]', ''))) AS ?step2430) .
BIND(((?step2430 + ?targetMotifMatchRegionMatchBeginPositionMF_04132420) - 1) AS ?thisPositionOn127) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn128) .
BIND(?this AS ?pfs7t431) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn127))) AS ?pfsb125) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn128))) AS ?pfse126) .
FILTER ((BOUND(?thisPositionOn127) && BOUND(?thisPositionOn128))) .
BIND(URI(CONCAT(STR(?this), '#MF_04132a124')) AS ?annotation124) .
BIND(?this AS ?pfs123) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch436 faldo:location ?templateMotifSequenceMatchRegionP12473437 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP12473439 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP12473MF_04132432 .
?templateMotifSequenceMatchRegionP12473437 faldo:begin ?templateMotifSequenceMatchBeginP12473438 .
?templateMotifSequenceMatchBeginP12473438 faldo:position ?templateMotifSequenceMatchBeginPositionP12473433 ;
faldo:reference isoform:P12473-1 .
?templateMotifSequenceProfileAlignmentOperationP12473439 edam:has_input signature:MF_04132 ;
rdf:type edam:operation_0300 .
?targetMotifMatch440 faldo:location ?targetMotifMatchRegionMatch441 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04132443 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP12473MF_04132434 .
?targetMotifMatchRegionMatch441 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04132442 .
?targetMotifMatchRegionMatchBeginMF_04132442 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04132435 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04132443 edam:has_input signature:MF_04132 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12473MF_04132432, 1, (STRLEN(?templateMotifCigarP12473MF_04132432) - STRLEN(REPLACE(?templateMotifCigarP12473MF_04132432, CONCAT('^(?:-*[^-]){', STR(((248 - ?templateMotifSequenceMatchBeginPositionP12473433) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1444) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12473MF_04132434, 1, (STRLEN(?targetMotifMatchCigarP12473MF_04132434) - STRLEN(REPLACE(?targetMotifMatchCigarP12473MF_04132434, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1444), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12473MF_04132434, 1, (STRLEN(?targetMotifMatchCigarP12473MF_04132434) - STRLEN(REPLACE(?targetMotifMatchCigarP12473MF_04132434, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1444), '}'), '')))), '[^-]', ''))) AS ?step2445) .
BIND(((?step2445 + ?targetMotifMatchRegionMatchBeginPositionMF_04132435) - 1) AS ?thisPositionOn133) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn134) .
BIND(?this AS ?pfs8t446) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn133))) AS ?pfsb131) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn134))) AS ?pfse132) .
FILTER ((BOUND(?thisPositionOn133) && BOUND(?thisPositionOn134))) .
BIND(URI(CONCAT(STR(?this), '#MF_04132a130')) AS ?annotation130) .
BIND(?this AS ?pfs129) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch451 faldo:location ?templateMotifSequenceMatchRegionP12473452 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP12473454 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP12473MF_04132447 .
?templateMotifSequenceMatchRegionP12473452 faldo:begin ?templateMotifSequenceMatchBeginP12473453 .
?templateMotifSequenceMatchBeginP12473453 faldo:position ?templateMotifSequenceMatchBeginPositionP12473448 ;
faldo:reference isoform:P12473-1 .
?templateMotifSequenceProfileAlignmentOperationP12473454 edam:has_input signature:MF_04132 ;
rdf:type edam:operation_0300 .
?targetMotifMatch455 faldo:location ?targetMotifMatchRegionMatch456 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04132458 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP12473MF_04132449 .
?targetMotifMatchRegionMatch456 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04132457 .
?targetMotifMatchRegionMatchBeginMF_04132457 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04132450 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04132458 edam:has_input signature:MF_04132 ;
rdf:type edam:operation_0300 .
BIND(1 AS ?thisPositionOn139) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12473MF_04132447, 1, (STRLEN(?templateMotifCigarP12473MF_04132447) - STRLEN(REPLACE(?templateMotifCigarP12473MF_04132447, CONCAT('^(?:-*[^-]){', STR(((231 - ?templateMotifSequenceMatchBeginPositionP12473448) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1459) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12473MF_04132449, 1, (STRLEN(?targetMotifMatchCigarP12473MF_04132449) - STRLEN(REPLACE(?targetMotifMatchCigarP12473MF_04132449, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1459), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12473MF_04132449, 1, (STRLEN(?targetMotifMatchCigarP12473MF_04132449) - STRLEN(REPLACE(?targetMotifMatchCigarP12473MF_04132449, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1459), '}'), '')))), '[^-]', ''))) AS ?step2460) .
BIND(((?step2460 + ?targetMotifMatchRegionMatchBeginPositionMF_04132450) - 1) AS ?thisPositionOn140) .
BIND(?this AS ?pfs9t461) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn139))) AS ?pfsb137) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn140))) AS ?pfse138) .
FILTER ((BOUND(?thisPositionOn139) && BOUND(?thisPositionOn140))) .
BIND(URI(CONCAT(STR(?this), '#MF_04132a136')) AS ?annotation136) .
BIND(?this AS ?pfs135) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag462) .
}
BIND(IF(BOUND(?tagdisulf), ?caseWithTag462, ?UNBOUND_VARIABLE) AS ?case16) .
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag463) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag463, ?UNBOUND_VARIABLE) AS ?case17) .
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag464) .
}
BIND(IF((BOUND(?tagcleavage1) || BOUND(?tagcleavage2) || BOUND(?tagcleavage3)), ?caseWithTag464, ?UNBOUND_VARIABLE) AS ?case18) .
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag465) .
}
BIND(IF((BOUND(?tagcleavage2) || BOUND(?tagcleavage3) || BOUND(?tagcleavage1)), ?caseWithTag465, ?UNBOUND_VARIABLE) AS ?case19) .
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag466) .
}
BIND(IF((BOUND(?tagcleavage1) || BOUND(?tagcleavage2) || BOUND(?tagcleavage3)), ?caseWithTag466, ?UNBOUND_VARIABLE) AS ?case20) .
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag467) .
}
BIND(IF((BOUND(?tagcleavage2) || BOUND(?tagcleavage1) || BOUND(?tagcleavage3)), ?caseWithTag467, ?UNBOUND_VARIABLE) AS ?case21) .
OPTIONAL {
?this up:annotation ?samcc468 ;
up:sequence ?thisSequence .
?samcc468 up:range ?samccr469 ;
rdf:type up:Coiled_Coil_Annotation .
?samccr469 faldo:begin ?samccb470 ;
faldo:end ?samcce471 .
?samccb470 faldo:position ?samccbp472 ;
faldo:reference ?thisSequence .
?samcce471 faldo:position ?samccep473 ;
faldo:reference ?thisSequence .
BIND(?this AS ?sam141) .
}
BIND(URI(CONCAT(STR(?this), '#MF_04132a147')) AS ?keyword147) .
}
"xsd:string |
