| http://purl.uniprot.org/unirules/MF_04166#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:981534 up:source unirule:MF_04166 .
_:981535 up:source unirule:MF_04166 .
_:981536 up:source unirule:MF_04166 .
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_:981575 up:source unirule:MF_04166 .
?this up:alternativeName ?name1 ,
?name2 ;
up:annotation ?annotation4 ,
?annotation5 ,
?annotation7 ,
?annotation8 ;
up:classifiedWith GO:0000287 ,
GO:0005524 ,
GO:0006164 ,
keyword:436 ,
keyword:460 ,
keyword:479 ,
keyword:547 ,
keyword:658 ,
keyword:67 ;
up:recommendedName ?name0 .
?name0 up:ecName '6.3.4.25' ;
up:fullName "N6-succino-2-amino-2'-deoxyadenylate synthase" ;
rdf:type up:Structured_Name .
?name1 up:fullName "2-amino-2'-deoxyadenylo-succinate synthase" ;
rdf:type up:Structured_Name .
?name2 up:fullName 'PurZ' ;
rdf:type up:Structured_Name .
?gene3 skos:prefLabel 'purZ' .
?annotation4 a up:Function_Annotation ;
rdfs:comment "Involved in the synthesis of the atypical nucleotide dZTP (2-amino-2'-deoxyadenosine-5'-triphosphate). Catalyzes the condensation of aspartate with deoxyguanylate into dSMP (N6-succino-2-amino-2'-deoxyadenylate), which undergoes defumarylation and phosphorylation respectively by host PurB and guanylate/nucleoside diphosphate kinases to give dZTP. dZTP is integrated into the viral genome instead of adenine by the viral DNA polymerase. This Z-base probably completely replaces adenosine and forms a triple bond to the opposite T-base. The resulting non-standard viral DNA is called Z-genome. The chemically modified DNA is probably harder for the host bacteria to digest with nucleases or restriction enzymes." .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity ;
up:enzymeClass .
?annotation7 a up:Pathway_Annotation ;
rdfs:comment 'Purine metabolism.' .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the Caudovirales PurZ family.' .
?pfs10 up:annotation ?annotation11 ,
?annotation17 ,
?annotation23 .
?annotation11 faldo:begin ?pfsb12 ;
faldo:end ?pfse13 ;
up:ligand ?ligand14 ;
rdf:type up:Binding_Site_Annotation .
?pfsb12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfse13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?ligand14 rdfs:subClassOf chebi:18420 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
up:ligand ?ligand20 ;
rdf:type up:Binding_Site_Annotation .
?pfsb18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?ligand20 rdfs:subClassOf chebi:18420 .
?annotation23 faldo:begin ?pfsb24 ;
faldo:end ?pfse25 ;
up:ligand ?ligand26 ;
rdf:type up:Binding_Site_Annotation .
?pfsb24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfse25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?ligand26 rdfs:subClassOf chebi:18420 .
?pfs29 up:annotation ?annotation30 .
?annotation30 faldo:begin ?pfsb31 ;
faldo:end ?pfse32 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb31 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfse32 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfs35 up:annotation ?annotation36 .
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faldo:end ?pfse38 ;
up:ligand ?ligand39 ;
rdf:type up:Binding_Site_Annotation .
?pfsb37 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?pfse38 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?ligand39 rdfs:subClassOf chebi:30616 .
?pfs42 up:annotation ?annotation43 .
?annotation43 faldo:begin ?pfsb44 ;
faldo:end ?pfse45 ;
up:ligand ?ligand46 ;
rdf:type up:Binding_Site_Annotation .
?pfsb44 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?pfse45 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?ligand46 rdfs:subClassOf chebi:57673 .
?pfs49 up:annotation ?annotation50 .
?annotation50 faldo:begin ?pfsb51 ;
faldo:end ?pfse52 ;
up:ligand ?ligand53 ;
rdf:type up:Binding_Site_Annotation .
?pfsb51 faldo:position ?thisPositionOn54 ;
rdf:type faldo:ExactPosition .
?pfse52 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
?ligand53 rdfs:subClassOf chebi:30616 .
?pfs56 up:annotation ?annotation57 .
?annotation57 faldo:begin ?pfsb58 ;
faldo:end ?pfse59 ;
up:ligand ?ligand60 ;
rdf:type up:Binding_Site_Annotation .
?pfsb58 faldo:position ?thisPositionOn61 ;
rdf:type faldo:ExactPosition .
?pfse59 faldo:position ?thisPositionOn62 ;
rdf:type faldo:ExactPosition .
?ligand60 rdfs:subClassOf chebi:30616 .
?pfs63 up:annotation ?annotation64 .
?annotation64 faldo:begin ?pfsb65 ;
faldo:end ?pfse66 ;
up:ligand ?ligand67 ;
rdf:type up:Binding_Site_Annotation .
?pfsb65 faldo:position ?thisPositionOn68 ;
rdf:type faldo:ExactPosition .
?pfse66 faldo:position ?thisPositionOn69 ;
rdf:type faldo:ExactPosition .
?ligand67 rdfs:subClassOf chebi:30616 .
?pfs70 up:annotation ?annotation71 .
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faldo:end ?pfse73 ;
up:ligand ?ligand74 ;
rdf:type up:Binding_Site_Annotation .
?pfsb72 faldo:position ?thisPositionOn75 ;
rdf:type faldo:ExactPosition .
?pfse73 faldo:position ?thisPositionOn76 ;
rdf:type faldo:ExactPosition .
?ligand74 rdfs:subClassOf chebi:30616 .
?pfs77 up:annotation ?annotation78 .
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faldo:end ?pfse80 ;
up:ligand ?ligand81 ;
rdf:type up:Binding_Site_Annotation .
?pfsb79 faldo:position ?thisPositionOn82 ;
rdf:type faldo:ExactPosition .
?pfse80 faldo:position ?thisPositionOn83 ;
rdf:type faldo:ExactPosition .
?ligand81 rdfs:subClassOf chebi:57673 .
?pfs84 up:annotation ?annotation85 .
?annotation85 faldo:begin ?pfsb86 ;
faldo:end ?pfse87 ;
up:ligand ?ligand88 ;
rdf:type up:Binding_Site_Annotation .
?pfsb86 faldo:position ?thisPositionOn89 ;
rdf:type faldo:ExactPosition .
?pfse87 faldo:position ?thisPositionOn90 ;
rdf:type faldo:ExactPosition .
?ligand88 rdfs:subClassOf chebi:30616 .
?pfs91 up:annotation ?annotation92 .
?annotation92 faldo:begin ?pfsb93 ;
faldo:end ?pfse94 ;
up:ligand ?ligand95 ;
rdf:type up:Binding_Site_Annotation .
?pfsb93 faldo:position ?thisPositionOn96 ;
rdf:type faldo:ExactPosition .
?pfse94 faldo:position ?thisPositionOn97 ;
rdf:type faldo:ExactPosition .
?ligand95 rdfs:subClassOf chebi:30616 .
?pfs98 up:annotation ?annotation99 .
?annotation99 faldo:begin ?pfsb100 ;
faldo:end ?pfse101 ;
up:ligand ?ligand102 ;
rdf:type up:Binding_Site_Annotation .
?pfsb100 faldo:position ?thisPositionOn103 ;
rdf:type faldo:ExactPosition .
?pfse101 faldo:position ?thisPositionOn104 ;
rdf:type faldo:ExactPosition .
?ligand102 rdfs:subClassOf chebi:30616 .
?pfs105 up:annotation ?annotation106 .
?annotation106 faldo:begin ?pfsb107 ;
faldo:end ?pfse108 ;
up:ligand ?ligand109 ;
rdf:type up:Binding_Site_Annotation .
?pfsb107 faldo:position ?thisPositionOn110 ;
rdf:type faldo:ExactPosition .
?pfse108 faldo:position ?thisPositionOn111 ;
rdf:type faldo:ExactPosition .
?ligand109 rdfs:subClassOf chebi:57673 .
?pfs112 up:annotation ?annotation113 .
?annotation113 faldo:begin ?pfsb114 ;
faldo:end ?pfse115 ;
up:ligand ?ligand116 ;
rdf:type up:Binding_Site_Annotation .
?pfsb114 faldo:position ?thisPositionOn117 ;
rdf:type faldo:ExactPosition .
?pfse115 faldo:position ?thisPositionOn118 ;
rdf:type faldo:ExactPosition .
?ligand116 rdfs:subClassOf chebi:57673 .
?pfs119 up:annotation ?annotation120 .
?annotation120 faldo:begin ?pfsb121 ;
faldo:end ?pfse122 ;
up:ligand ?ligand123 ;
rdf:type up:Binding_Site_Annotation .
?pfsb121 faldo:position ?thisPositionOn124 ;
rdf:type faldo:ExactPosition .
?pfse122 faldo:position ?thisPositionOn125 ;
rdf:type faldo:ExactPosition .
?ligand123 rdfs:subClassOf chebi:57673 .
?pfs126 up:annotation ?annotation127 .
?annotation127 faldo:begin ?pfsb128 ;
faldo:end ?pfse129 ;
up:ligand ?ligand130 ;
rdf:type up:Binding_Site_Annotation .
?pfsb128 faldo:position ?thisPositionOn131 ;
rdf:type faldo:ExactPosition .
?pfse129 faldo:position ?thisPositionOn132 ;
rdf:type faldo:ExactPosition .
?ligand130 rdfs:subClassOf chebi:30616 .
?pfs133 up:annotation ?annotation134 .
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faldo:end ?pfse136 ;
up:ligand ?ligand137 ;
rdf:type up:Binding_Site_Annotation .
?pfsb135 faldo:position ?thisPositionOn138 ;
rdf:type faldo:ExactPosition .
?pfse136 faldo:position ?thisPositionOn139 ;
rdf:type faldo:ExactPosition .
?ligand137 rdfs:subClassOf chebi:57673 .
?pfs140 up:annotation ?annotation141 .
?annotation141 faldo:begin ?pfsb142 ;
faldo:end ?pfse143 ;
up:ligand ?ligand144 ;
rdf:type up:Binding_Site_Annotation .
?pfsb142 faldo:position ?thisPositionOn145 ;
rdf:type faldo:ExactPosition .
?pfse143 faldo:position ?thisPositionOn146 ;
rdf:type faldo:ExactPosition .
?ligand144 rdfs:subClassOf chebi:29991 .
?pfs147 up:annotation ?annotation148 .
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faldo:end ?pfse150 ;
up:ligand ?ligand151 ;
rdf:type up:Binding_Site_Annotation .
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rdf:type faldo:ExactPosition .
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rdf:type faldo:ExactPosition .
?ligand151 rdfs:subClassOf chebi:29991 .
?pfs154 up:annotation ?annotation155 .
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faldo:end ?pfse157 ;
up:ligand ?ligand158 ;
rdf:type up:Binding_Site_Annotation .
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rdf:type faldo:ExactPosition .
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rdf:type faldo:ExactPosition .
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rdf:type up:Binding_Site_Annotation .
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rdf:type faldo:ExactPosition .
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rdf:type faldo:ExactPosition .
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rdf:type up:Binding_Site_Annotation .
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rdf:type faldo:ExactPosition .
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rdf:type faldo:ExactPosition .
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rdf:type up:Binding_Site_Annotation .
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rdf:type faldo:ExactPosition .
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rdf:type faldo:ExactPosition .
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rdf:object ?annotation148 .
_:981635 a rdf:Statement ;
up:source unirule:MF_04166 ;
rdf:subject ?pfs154 ;
rdf:predicate up:annotation ;
rdf:object ?annotation155 .
_:981636 a rdf:Statement ;
up:attribution _:981572 ;
rdf:subject ?pfs154 ;
rdf:predicate up:annotation ;
rdf:object ?annotation155 .
_:981637 a rdf:Statement ;
up:source unirule:MF_04166 ;
rdf:subject ?pfs161 ;
rdf:predicate up:annotation ;
rdf:object ?annotation162 .
_:981638 a rdf:Statement ;
up:attribution _:981573 ;
rdf:subject ?pfs161 ;
rdf:predicate up:annotation ;
rdf:object ?annotation162 .
_:981639 a rdf:Statement ;
up:source unirule:MF_04166 ;
rdf:subject ?pfs168 ;
rdf:predicate up:annotation ;
rdf:object ?annotation169 .
_:981640 a rdf:Statement ;
up:attribution _:981574 ;
rdf:subject ?pfs168 ;
rdf:predicate up:annotation ;
rdf:object ?annotation169 .
_:981641 a rdf:Statement ;
up:source unirule:MF_04166 ;
rdf:subject ?pfs175 ;
rdf:predicate up:annotation ;
rdf:object ?annotation176 .
_:981642 a rdf:Statement ;
up:attribution _:981575 ;
rdf:subject ?pfs175 ;
rdf:predicate up:annotation ;
rdf:object ?annotation176 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_04166
#Rule MF_04166 Created by:? on:2021-06-03 Modified by:Edouard de Castro on:2024-09-02
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_04166 .
?thisOrganism rdfs:subClassOf+ taxon:2731619 .
BIND(URI(CONCAT(STR(?this), '#MF_04166a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_04166a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_04166a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_04166a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_04166a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_04166a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_04166a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch186 faldo:location ?templateMotifSequenceMatchRegionG3FFN6187 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationG3FFN6189 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarG3FFN6MF_04166182 .
?templateMotifSequenceMatchRegionG3FFN6187 faldo:begin ?templateMotifSequenceMatchBeginG3FFN6188 .
?templateMotifSequenceMatchBeginG3FFN6188 faldo:position ?templateMotifSequenceMatchBeginPositionG3FFN6183 ;
faldo:reference isoform:G3FFN6-1 .
?templateMotifSequenceProfileAlignmentOperationG3FFN6189 edam:has_input signature:MF_04166 ;
rdf:type edam:operation_0300 .
?targetMotifMatch190 faldo:location ?targetMotifMatchRegionMatch191 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04166193 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarG3FFN6MF_04166184 .
?targetMotifMatchRegionMatch191 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04166192 .
?targetMotifMatchRegionMatchBeginMF_04166192 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04166185 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04166193 edam:has_input signature:MF_04166 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarG3FFN6MF_04166182, 1, (STRLEN(?templateMotifCigarG3FFN6MF_04166182) - STRLEN(REPLACE(?templateMotifCigarG3FFN6MF_04166182, CONCAT('^(?:-*[^-]){', STR(((14 - ?templateMotifSequenceMatchBeginPositionG3FFN6183) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1194) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarG3FFN6MF_04166184, 1, (STRLEN(?targetMotifMatchCigarG3FFN6MF_04166184) - STRLEN(REPLACE(?targetMotifMatchCigarG3FFN6MF_04166184, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1194), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarG3FFN6MF_04166184, 1, (STRLEN(?targetMotifMatchCigarG3FFN6MF_04166184) - STRLEN(REPLACE(?targetMotifMatchCigarG3FFN6MF_04166184, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1194), '}'), '')))), '[^-]', ''))) AS ?step2195) .
BIND(((?step2195 + ?targetMotifMatchRegionMatchBeginPositionMF_04166185) - 1) AS ?thisPositionOn15) .
BIND(?thisPositionOn15 AS ?thisPositionOn16) .
BIND(?this AS ?pfs1t196) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb12) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse13) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn15, 1) = 'S')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarG3FFN6MF_04166182, 1, (STRLEN(?templateMotifCigarG3FFN6MF_04166182) - STRLEN(REPLACE(?templateMotifCigarG3FFN6MF_04166182, CONCAT('^(?:-*[^-]){', STR(((42 - ?templateMotifSequenceMatchBeginPositionG3FFN6183) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1197) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarG3FFN6MF_04166184, 1, (STRLEN(?targetMotifMatchCigarG3FFN6MF_04166184) - STRLEN(REPLACE(?targetMotifMatchCigarG3FFN6MF_04166184, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1197), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarG3FFN6MF_04166184, 1, (STRLEN(?targetMotifMatchCigarG3FFN6MF_04166184) - STRLEN(REPLACE(?targetMotifMatchCigarG3FFN6MF_04166184, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1197), '}'), '')))), '[^-]', ''))) AS ?step2198) .
BIND(((?step2198 + ?targetMotifMatchRegionMatchBeginPositionMF_04166185) - 1) AS ?thisPositionOn21) .
BIND(?thisPositionOn21 AS ?thisPositionOn22) .
BIND(?this AS ?pfs1t199) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse19) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn21, 1) = 'G')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarG3FFN6MF_04166182, 1, (STRLEN(?templateMotifCigarG3FFN6MF_04166182) - STRLEN(REPLACE(?templateMotifCigarG3FFN6MF_04166182, CONCAT('^(?:-*[^-]){', STR(((263 - ?templateMotifSequenceMatchBeginPositionG3FFN6183) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1200) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarG3FFN6MF_04166184, 1, (STRLEN(?targetMotifMatchCigarG3FFN6MF_04166184) - STRLEN(REPLACE(?targetMotifMatchCigarG3FFN6MF_04166184, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1200), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarG3FFN6MF_04166184, 1, (STRLEN(?targetMotifMatchCigarG3FFN6MF_04166184) - STRLEN(REPLACE(?targetMotifMatchCigarG3FFN6MF_04166184, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1200), '}'), '')))), '[^-]', ''))) AS ?step2201) .
BIND(((?step2201 + ?targetMotifMatchRegionMatchBeginPositionMF_04166185) - 1) AS ?thisPositionOn27) .
BIND(?thisPositionOn27 AS ?thisPositionOn28) .
BIND(?this AS ?pfs1t202) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb24) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse25) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn27, 1) = 'T')) .
BIND(?this AS ?pfs10) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch207 faldo:location ?templateMotifSequenceMatchRegionG3FFN6208 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationG3FFN6210 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarG3FFN6MF_04166203 .
?templateMotifSequenceMatchRegionG3FFN6208 faldo:begin ?templateMotifSequenceMatchBeginG3FFN6209 .
?templateMotifSequenceMatchBeginG3FFN6209 faldo:position ?templateMotifSequenceMatchBeginPositionG3FFN6204 ;
faldo:reference isoform:G3FFN6-1 .
?templateMotifSequenceProfileAlignmentOperationG3FFN6210 edam:has_input signature:MF_04166 ;
rdf:type edam:operation_0300 .
?targetMotifMatch211 faldo:location ?targetMotifMatchRegionMatch212 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04166214 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarG3FFN6MF_04166205 .
?targetMotifMatchRegionMatch212 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04166213 .
?targetMotifMatchRegionMatchBeginMF_04166213 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04166206 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04166214 edam:has_input signature:MF_04166 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarG3FFN6MF_04166203, 1, (STRLEN(?templateMotifCigarG3FFN6MF_04166203) - STRLEN(REPLACE(?templateMotifCigarG3FFN6MF_04166203, CONCAT('^(?:-*[^-]){', STR(((14 - ?templateMotifSequenceMatchBeginPositionG3FFN6204) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1215) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarG3FFN6MF_04166205, 1, (STRLEN(?targetMotifMatchCigarG3FFN6MF_04166205) - STRLEN(REPLACE(?targetMotifMatchCigarG3FFN6MF_04166205, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1215), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarG3FFN6MF_04166205, 1, (STRLEN(?targetMotifMatchCigarG3FFN6MF_04166205) - STRLEN(REPLACE(?targetMotifMatchCigarG3FFN6MF_04166205, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1215), '}'), '')))), '[^-]', ''))) AS ?step2216) .
BIND(((?step2216 + ?targetMotifMatchRegionMatchBeginPositionMF_04166206) - 1) AS ?thisPositionOn33) .
BIND(?thisPositionOn33 AS ?thisPositionOn34) .
BIND(?this AS ?pfs2t217) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb31) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse32) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn33, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_04166a30')) AS ?annotation30) .
BIND(?this AS ?pfs29) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch222 faldo:location ?templateMotifSequenceMatchRegionG3FFN6223 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationG3FFN6225 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarG3FFN6MF_04166218 .
?templateMotifSequenceMatchRegionG3FFN6223 faldo:begin ?templateMotifSequenceMatchBeginG3FFN6224 .
?templateMotifSequenceMatchBeginG3FFN6224 faldo:position ?templateMotifSequenceMatchBeginPositionG3FFN6219 ;
faldo:reference isoform:G3FFN6-1 .
?templateMotifSequenceProfileAlignmentOperationG3FFN6225 edam:has_input signature:MF_04166 ;
rdf:type edam:operation_0300 .
?targetMotifMatch226 faldo:location ?targetMotifMatchRegionMatch227 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04166229 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarG3FFN6MF_04166220 .
?targetMotifMatchRegionMatch227 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04166228 .
?targetMotifMatchRegionMatchBeginMF_04166228 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04166221 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04166229 edam:has_input signature:MF_04166 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarG3FFN6MF_04166218, 1, (STRLEN(?templateMotifCigarG3FFN6MF_04166218) - STRLEN(REPLACE(?templateMotifCigarG3FFN6MF_04166218, CONCAT('^(?:-*[^-]){', STR(((14 - ?templateMotifSequenceMatchBeginPositionG3FFN6219) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1230) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarG3FFN6MF_04166220, 1, (STRLEN(?targetMotifMatchCigarG3FFN6MF_04166220) - STRLEN(REPLACE(?targetMotifMatchCigarG3FFN6MF_04166220, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1230), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarG3FFN6MF_04166220, 1, (STRLEN(?targetMotifMatchCigarG3FFN6MF_04166220) - STRLEN(REPLACE(?targetMotifMatchCigarG3FFN6MF_04166220, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1230), '}'), '')))), '[^-]', ''))) AS ?step2231) .
BIND(((?step2231 + ?targetMotifMatchRegionMatchBeginPositionMF_04166221) - 1) AS ?thisPositionOn40) .
BIND(?thisPositionOn40 AS ?thisPositionOn41) .
BIND(?this AS ?pfs2t232) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfsb37) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfse38) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn40, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_04166a36')) AS ?annotation36) .
BIND(?this AS ?pfs35) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch237 faldo:location ?templateMotifSequenceMatchRegionG3FFN6238 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationG3FFN6240 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarG3FFN6MF_04166233 .
?templateMotifSequenceMatchRegionG3FFN6238 faldo:begin ?templateMotifSequenceMatchBeginG3FFN6239 .
?templateMotifSequenceMatchBeginG3FFN6239 faldo:position ?templateMotifSequenceMatchBeginPositionG3FFN6234 ;
faldo:reference isoform:G3FFN6-1 .
?templateMotifSequenceProfileAlignmentOperationG3FFN6240 edam:has_input signature:MF_04166 ;
rdf:type edam:operation_0300 .
?targetMotifMatch241 faldo:location ?targetMotifMatchRegionMatch242 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04166244 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarG3FFN6MF_04166235 .
?targetMotifMatchRegionMatch242 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04166243 .
?targetMotifMatchRegionMatchBeginMF_04166243 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04166236 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04166244 edam:has_input signature:MF_04166 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarG3FFN6MF_04166233, 1, (STRLEN(?templateMotifCigarG3FFN6MF_04166233) - STRLEN(REPLACE(?templateMotifCigarG3FFN6MF_04166233, CONCAT('^(?:-*[^-]){', STR(((14 - ?templateMotifSequenceMatchBeginPositionG3FFN6234) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1245) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarG3FFN6MF_04166235, 1, (STRLEN(?targetMotifMatchCigarG3FFN6MF_04166235) - STRLEN(REPLACE(?targetMotifMatchCigarG3FFN6MF_04166235, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1245), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarG3FFN6MF_04166235, 1, (STRLEN(?targetMotifMatchCigarG3FFN6MF_04166235) - STRLEN(REPLACE(?targetMotifMatchCigarG3FFN6MF_04166235, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1245), '}'), '')))), '[^-]', ''))) AS ?step2246) .
BIND(((?step2246 + ?targetMotifMatchRegionMatchBeginPositionMF_04166236) - 1) AS ?thisPositionOn47) .
BIND(?thisPositionOn47 AS ?thisPositionOn48) .
BIND(?this AS ?pfs2t247) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfsb44) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfse45) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn47, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_04166a43')) AS ?annotation43) .
BIND(?this AS ?pfs42) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch252 faldo:location ?templateMotifSequenceMatchRegionG3FFN6253 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationG3FFN6255 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarG3FFN6MF_04166248 .
?templateMotifSequenceMatchRegionG3FFN6253 faldo:begin ?templateMotifSequenceMatchBeginG3FFN6254 .
?templateMotifSequenceMatchBeginG3FFN6254 faldo:position ?templateMotifSequenceMatchBeginPositionG3FFN6249 ;
faldo:reference isoform:G3FFN6-1 .
?templateMotifSequenceProfileAlignmentOperationG3FFN6255 edam:has_input signature:MF_04166 ;
rdf:type edam:operation_0300 .
?targetMotifMatch256 faldo:location ?targetMotifMatchRegionMatch257 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04166259 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarG3FFN6MF_04166250 .
?targetMotifMatchRegionMatch257 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04166258 .
?targetMotifMatchRegionMatchBeginMF_04166258 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04166251 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04166259 edam:has_input signature:MF_04166 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarG3FFN6MF_04166248, 1, (STRLEN(?templateMotifCigarG3FFN6MF_04166248) - STRLEN(REPLACE(?templateMotifCigarG3FFN6MF_04166248, CONCAT('^(?:-*[^-]){', STR(((15 - ?templateMotifSequenceMatchBeginPositionG3FFN6249) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1260) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarG3FFN6MF_04166250, 1, (STRLEN(?targetMotifMatchCigarG3FFN6MF_04166250) - STRLEN(REPLACE(?targetMotifMatchCigarG3FFN6MF_04166250, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1260), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarG3FFN6MF_04166250, 1, (STRLEN(?targetMotifMatchCigarG3FFN6MF_04166250) - STRLEN(REPLACE(?targetMotifMatchCigarG3FFN6MF_04166250, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1260), '}'), '')))), '[^-]', ''))) AS ?step2261) .
BIND(((?step2261 + ?targetMotifMatchRegionMatchBeginPositionMF_04166251) - 1) AS ?thisPositionOn54) .
BIND(?thisPositionOn54 AS ?thisPositionOn55) .
BIND(?this AS ?pfs2t262) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfsb51) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfse52) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn54, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_04166a50')) AS ?annotation50) .
BIND(?this AS ?pfs49) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch267 faldo:location ?templateMotifSequenceMatchRegionG3FFN6268 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationG3FFN6270 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarG3FFN6MF_04166263 .
?templateMotifSequenceMatchRegionG3FFN6268 faldo:begin ?templateMotifSequenceMatchBeginG3FFN6269 .
?templateMotifSequenceMatchBeginG3FFN6269 faldo:position ?templateMotifSequenceMatchBeginPositionG3FFN6264 ;
faldo:reference isoform:G3FFN6-1 .
?templateMotifSequenceProfileAlignmentOperationG3FFN6270 edam:has_input signature:MF_04166 ;
rdf:type edam:operation_0300 .
?targetMotifMatch271 faldo:location ?targetMotifMatchRegionMatch272 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04166274 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarG3FFN6MF_04166265 .
?targetMotifMatchRegionMatch272 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04166273 .
?targetMotifMatchRegionMatchBeginMF_04166273 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04166266 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04166274 edam:has_input signature:MF_04166 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarG3FFN6MF_04166263, 1, (STRLEN(?templateMotifCigarG3FFN6MF_04166263) - STRLEN(REPLACE(?templateMotifCigarG3FFN6MF_04166263, CONCAT('^(?:-*[^-]){', STR(((16 - ?templateMotifSequenceMatchBeginPositionG3FFN6264) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1275) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarG3FFN6MF_04166265, 1, (STRLEN(?targetMotifMatchCigarG3FFN6MF_04166265) - STRLEN(REPLACE(?targetMotifMatchCigarG3FFN6MF_04166265, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1275), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarG3FFN6MF_04166265, 1, (STRLEN(?targetMotifMatchCigarG3FFN6MF_04166265) - STRLEN(REPLACE(?targetMotifMatchCigarG3FFN6MF_04166265, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1275), '}'), '')))), '[^-]', ''))) AS ?step2276) .
BIND(((?step2276 + ?targetMotifMatchRegionMatchBeginPositionMF_04166266) - 1) AS ?thisPositionOn61) .
BIND(?thisPositionOn61 AS ?thisPositionOn62) .
BIND(?this AS ?pfs2t277) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfsb58) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfse59) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn61, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_04166a57')) AS ?annotation57) .
BIND(?this AS ?pfs56) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch282 faldo:location ?templateMotifSequenceMatchRegionG3FFN6283 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationG3FFN6285 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarG3FFN6MF_04166278 .
?templateMotifSequenceMatchRegionG3FFN6283 faldo:begin ?templateMotifSequenceMatchBeginG3FFN6284 .
?templateMotifSequenceMatchBeginG3FFN6284 faldo:position ?templateMotifSequenceMatchBeginPositionG3FFN6279 ;
faldo:reference isoform:G3FFN6-1 .
?templateMotifSequenceProfileAlignmentOperationG3FFN6285 edam:has_input signature:MF_04166 ;
rdf:type edam:operation_0300 .
?targetMotifMatch286 faldo:location ?targetMotifMatchRegionMatch287 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04166289 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarG3FFN6MF_04166280 .
?targetMotifMatchRegionMatch287 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04166288 .
?targetMotifMatchRegionMatchBeginMF_04166288 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04166281 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04166289 edam:has_input signature:MF_04166 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarG3FFN6MF_04166278, 1, (STRLEN(?templateMotifCigarG3FFN6MF_04166278) - STRLEN(REPLACE(?templateMotifCigarG3FFN6MF_04166278, CONCAT('^(?:-*[^-]){', STR(((17 - ?templateMotifSequenceMatchBeginPositionG3FFN6279) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1290) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarG3FFN6MF_04166280, 1, (STRLEN(?targetMotifMatchCigarG3FFN6MF_04166280) - STRLEN(REPLACE(?targetMotifMatchCigarG3FFN6MF_04166280, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1290), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarG3FFN6MF_04166280, 1, (STRLEN(?targetMotifMatchCigarG3FFN6MF_04166280) - STRLEN(REPLACE(?targetMotifMatchCigarG3FFN6MF_04166280, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1290), '}'), '')))), '[^-]', ''))) AS ?step2291) .
BIND(((?step2291 + ?targetMotifMatchRegionMatchBeginPositionMF_04166281) - 1) AS ?thisPositionOn68) .
BIND(?thisPositionOn68 AS ?thisPositionOn69) .
BIND(?this AS ?pfs2t292) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn68))) AS ?pfsb65) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn69))) AS ?pfse66) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn68, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_04166a64')) AS ?annotation64) .
BIND(?this AS ?pfs63) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch297 faldo:location ?templateMotifSequenceMatchRegionG3FFN6298 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationG3FFN6300 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarG3FFN6MF_04166293 .
?templateMotifSequenceMatchRegionG3FFN6298 faldo:begin ?templateMotifSequenceMatchBeginG3FFN6299 .
?templateMotifSequenceMatchBeginG3FFN6299 faldo:position ?templateMotifSequenceMatchBeginPositionG3FFN6294 ;
faldo:reference isoform:G3FFN6-1 .
?templateMotifSequenceProfileAlignmentOperationG3FFN6300 edam:has_input signature:MF_04166 ;
rdf:type edam:operation_0300 .
?targetMotifMatch301 faldo:location ?targetMotifMatchRegionMatch302 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04166304 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarG3FFN6MF_04166295 .
?targetMotifMatchRegionMatch302 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04166303 .
?targetMotifMatchRegionMatchBeginMF_04166303 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04166296 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04166304 edam:has_input signature:MF_04166 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarG3FFN6MF_04166293, 1, (STRLEN(?templateMotifCigarG3FFN6MF_04166293) - STRLEN(REPLACE(?templateMotifCigarG3FFN6MF_04166293, CONCAT('^(?:-*[^-]){', STR(((18 - ?templateMotifSequenceMatchBeginPositionG3FFN6294) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1305) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarG3FFN6MF_04166295, 1, (STRLEN(?targetMotifMatchCigarG3FFN6MF_04166295) - STRLEN(REPLACE(?targetMotifMatchCigarG3FFN6MF_04166295, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1305), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarG3FFN6MF_04166295, 1, (STRLEN(?targetMotifMatchCigarG3FFN6MF_04166295) - STRLEN(REPLACE(?targetMotifMatchCigarG3FFN6MF_04166295, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1305), '}'), '')))), '[^-]', ''))) AS ?step2306) .
BIND(((?step2306 + ?targetMotifMatchRegionMatchBeginPositionMF_04166296) - 1) AS ?thisPositionOn75) .
BIND(?thisPositionOn75 AS ?thisPositionOn76) .
BIND(?this AS ?pfs2t307) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn75))) AS ?pfsb72) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn76))) AS ?pfse73) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn75, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_04166a71')) AS ?annotation71) .
BIND(?this AS ?pfs70) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch312 faldo:location ?templateMotifSequenceMatchRegionG3FFN6313 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationG3FFN6315 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarG3FFN6MF_04166308 .
?templateMotifSequenceMatchRegionG3FFN6313 faldo:begin ?templateMotifSequenceMatchBeginG3FFN6314 .
?templateMotifSequenceMatchBeginG3FFN6314 faldo:position ?templateMotifSequenceMatchBeginPositionG3FFN6309 ;
faldo:reference isoform:G3FFN6-1 .
?templateMotifSequenceProfileAlignmentOperationG3FFN6315 edam:has_input signature:MF_04166 ;
rdf:type edam:operation_0300 .
?targetMotifMatch316 faldo:location ?targetMotifMatchRegionMatch317 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04166319 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarG3FFN6MF_04166310 .
?targetMotifMatchRegionMatch317 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04166318 .
?targetMotifMatchRegionMatchBeginMF_04166318 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04166311 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04166319 edam:has_input signature:MF_04166 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarG3FFN6MF_04166308, 1, (STRLEN(?templateMotifCigarG3FFN6MF_04166308) - STRLEN(REPLACE(?templateMotifCigarG3FFN6MF_04166308, CONCAT('^(?:-*[^-]){', STR(((40 - ?templateMotifSequenceMatchBeginPositionG3FFN6309) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1320) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarG3FFN6MF_04166310, 1, (STRLEN(?targetMotifMatchCigarG3FFN6MF_04166310) - STRLEN(REPLACE(?targetMotifMatchCigarG3FFN6MF_04166310, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1320), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarG3FFN6MF_04166310, 1, (STRLEN(?targetMotifMatchCigarG3FFN6MF_04166310) - STRLEN(REPLACE(?targetMotifMatchCigarG3FFN6MF_04166310, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1320), '}'), '')))), '[^-]', ''))) AS ?step2321) .
BIND(((?step2321 + ?targetMotifMatchRegionMatchBeginPositionMF_04166311) - 1) AS ?thisPositionOn82) .
BIND(?thisPositionOn82 AS ?thisPositionOn83) .
BIND(?this AS ?pfs2t322) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn82))) AS ?pfsb79) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn83))) AS ?pfse80) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn82, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_04166a78')) AS ?annotation78) .
BIND(?this AS ?pfs77) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch327 faldo:location ?templateMotifSequenceMatchRegionG3FFN6328 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationG3FFN6330 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarG3FFN6MF_04166323 .
?templateMotifSequenceMatchRegionG3FFN6328 faldo:begin ?templateMotifSequenceMatchBeginG3FFN6329 .
?templateMotifSequenceMatchBeginG3FFN6329 faldo:position ?templateMotifSequenceMatchBeginPositionG3FFN6324 ;
faldo:reference isoform:G3FFN6-1 .
?templateMotifSequenceProfileAlignmentOperationG3FFN6330 edam:has_input signature:MF_04166 ;
rdf:type edam:operation_0300 .
?targetMotifMatch331 faldo:location ?targetMotifMatchRegionMatch332 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04166334 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarG3FFN6MF_04166325 .
?targetMotifMatchRegionMatch332 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04166333 .
?targetMotifMatchRegionMatchBeginMF_04166333 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04166326 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04166334 edam:has_input signature:MF_04166 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarG3FFN6MF_04166323, 1, (STRLEN(?templateMotifCigarG3FFN6MF_04166323) - STRLEN(REPLACE(?templateMotifCigarG3FFN6MF_04166323, CONCAT('^(?:-*[^-]){', STR(((42 - ?templateMotifSequenceMatchBeginPositionG3FFN6324) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1335) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarG3FFN6MF_04166325, 1, (STRLEN(?targetMotifMatchCigarG3FFN6MF_04166325) - STRLEN(REPLACE(?targetMotifMatchCigarG3FFN6MF_04166325, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1335), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarG3FFN6MF_04166325, 1, (STRLEN(?targetMotifMatchCigarG3FFN6MF_04166325) - STRLEN(REPLACE(?targetMotifMatchCigarG3FFN6MF_04166325, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1335), '}'), '')))), '[^-]', ''))) AS ?step2336) .
BIND(((?step2336 + ?targetMotifMatchRegionMatchBeginPositionMF_04166326) - 1) AS ?thisPositionOn89) .
BIND(?thisPositionOn89 AS ?thisPositionOn90) .
BIND(?this AS ?pfs2t337) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn89))) AS ?pfsb86) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn90))) AS ?pfse87) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn89, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_04166a85')) AS ?annotation85) .
BIND(?this AS ?pfs84) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch342 faldo:location ?templateMotifSequenceMatchRegionG3FFN6343 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationG3FFN6345 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarG3FFN6MF_04166338 .
?templateMotifSequenceMatchRegionG3FFN6343 faldo:begin ?templateMotifSequenceMatchBeginG3FFN6344 .
?templateMotifSequenceMatchBeginG3FFN6344 faldo:position ?templateMotifSequenceMatchBeginPositionG3FFN6339 ;
faldo:reference isoform:G3FFN6-1 .
?templateMotifSequenceProfileAlignmentOperationG3FFN6345 edam:has_input signature:MF_04166 ;
rdf:type edam:operation_0300 .
?targetMotifMatch346 faldo:location ?targetMotifMatchRegionMatch347 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04166349 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarG3FFN6MF_04166340 .
?targetMotifMatchRegionMatch347 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04166348 .
?targetMotifMatchRegionMatchBeginMF_04166348 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04166341 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04166349 edam:has_input signature:MF_04166 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarG3FFN6MF_04166338, 1, (STRLEN(?templateMotifCigarG3FFN6MF_04166338) - STRLEN(REPLACE(?templateMotifCigarG3FFN6MF_04166338, CONCAT('^(?:-*[^-]){', STR(((43 - ?templateMotifSequenceMatchBeginPositionG3FFN6339) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1350) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarG3FFN6MF_04166340, 1, (STRLEN(?targetMotifMatchCigarG3FFN6MF_04166340) - STRLEN(REPLACE(?targetMotifMatchCigarG3FFN6MF_04166340, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1350), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarG3FFN6MF_04166340, 1, (STRLEN(?targetMotifMatchCigarG3FFN6MF_04166340) - STRLEN(REPLACE(?targetMotifMatchCigarG3FFN6MF_04166340, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1350), '}'), '')))), '[^-]', ''))) AS ?step2351) .
BIND(((?step2351 + ?targetMotifMatchRegionMatchBeginPositionMF_04166341) - 1) AS ?thisPositionOn96) .
BIND(?thisPositionOn96 AS ?thisPositionOn97) .
BIND(?this AS ?pfs2t352) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn96))) AS ?pfsb93) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn97))) AS ?pfse94) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn96, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_04166a92')) AS ?annotation92) .
BIND(?this AS ?pfs91) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch357 faldo:location ?templateMotifSequenceMatchRegionG3FFN6358 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationG3FFN6360 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarG3FFN6MF_04166353 .
?templateMotifSequenceMatchRegionG3FFN6358 faldo:begin ?templateMotifSequenceMatchBeginG3FFN6359 .
?templateMotifSequenceMatchBeginG3FFN6359 faldo:position ?templateMotifSequenceMatchBeginPositionG3FFN6354 ;
faldo:reference isoform:G3FFN6-1 .
?templateMotifSequenceProfileAlignmentOperationG3FFN6360 edam:has_input signature:MF_04166 ;
rdf:type edam:operation_0300 .
?targetMotifMatch361 faldo:location ?targetMotifMatchRegionMatch362 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04166364 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarG3FFN6MF_04166355 .
?targetMotifMatchRegionMatch362 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04166363 .
?targetMotifMatchRegionMatchBeginMF_04166363 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04166356 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04166364 edam:has_input signature:MF_04166 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarG3FFN6MF_04166353, 1, (STRLEN(?templateMotifCigarG3FFN6MF_04166353) - STRLEN(REPLACE(?templateMotifCigarG3FFN6MF_04166353, CONCAT('^(?:-*[^-]){', STR(((44 - ?templateMotifSequenceMatchBeginPositionG3FFN6354) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1365) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarG3FFN6MF_04166355, 1, (STRLEN(?targetMotifMatchCigarG3FFN6MF_04166355) - STRLEN(REPLACE(?targetMotifMatchCigarG3FFN6MF_04166355, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1365), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarG3FFN6MF_04166355, 1, (STRLEN(?targetMotifMatchCigarG3FFN6MF_04166355) - STRLEN(REPLACE(?targetMotifMatchCigarG3FFN6MF_04166355, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1365), '}'), '')))), '[^-]', ''))) AS ?step2366) .
BIND(((?step2366 + ?targetMotifMatchRegionMatchBeginPositionMF_04166356) - 1) AS ?thisPositionOn103) .
BIND(?thisPositionOn103 AS ?thisPositionOn104) .
BIND(?this AS ?pfs2t367) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn103))) AS ?pfsb100) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn104))) AS ?pfse101) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn103, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_04166a99')) AS ?annotation99) .
BIND(?this AS ?pfs98) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch372 faldo:location ?templateMotifSequenceMatchRegionG3FFN6373 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationG3FFN6375 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarG3FFN6MF_04166368 .
?templateMotifSequenceMatchRegionG3FFN6373 faldo:begin ?templateMotifSequenceMatchBeginG3FFN6374 .
?templateMotifSequenceMatchBeginG3FFN6374 faldo:position ?templateMotifSequenceMatchBeginPositionG3FFN6369 ;
faldo:reference isoform:G3FFN6-1 .
?templateMotifSequenceProfileAlignmentOperationG3FFN6375 edam:has_input signature:MF_04166 ;
rdf:type edam:operation_0300 .
?targetMotifMatch376 faldo:location ?targetMotifMatchRegionMatch377 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04166379 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarG3FFN6MF_04166370 .
?targetMotifMatchRegionMatch377 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04166378 .
?targetMotifMatchRegionMatchBeginMF_04166378 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04166371 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04166379 edam:has_input signature:MF_04166 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarG3FFN6MF_04166368, 1, (STRLEN(?templateMotifCigarG3FFN6MF_04166368) - STRLEN(REPLACE(?templateMotifCigarG3FFN6MF_04166368, CONCAT('^(?:-*[^-]){', STR(((127 - ?templateMotifSequenceMatchBeginPositionG3FFN6369) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1380) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarG3FFN6MF_04166370, 1, (STRLEN(?targetMotifMatchCigarG3FFN6MF_04166370) - STRLEN(REPLACE(?targetMotifMatchCigarG3FFN6MF_04166370, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1380), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarG3FFN6MF_04166370, 1, (STRLEN(?targetMotifMatchCigarG3FFN6MF_04166370) - STRLEN(REPLACE(?targetMotifMatchCigarG3FFN6MF_04166370, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1380), '}'), '')))), '[^-]', ''))) AS ?step2381) .
BIND(((?step2381 + ?targetMotifMatchRegionMatchBeginPositionMF_04166371) - 1) AS ?thisPositionOn110) .
BIND(?thisPositionOn110 AS ?thisPositionOn111) .
BIND(?this AS ?pfs2t382) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn110))) AS ?pfsb107) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn111))) AS ?pfse108) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn110, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_04166a106')) AS ?annotation106) .
BIND(?this AS ?pfs105) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch387 faldo:location ?templateMotifSequenceMatchRegionG3FFN6388 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationG3FFN6390 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarG3FFN6MF_04166383 .
?templateMotifSequenceMatchRegionG3FFN6388 faldo:begin ?templateMotifSequenceMatchBeginG3FFN6389 .
?templateMotifSequenceMatchBeginG3FFN6389 faldo:position ?templateMotifSequenceMatchBeginPositionG3FFN6384 ;
faldo:reference isoform:G3FFN6-1 .
?templateMotifSequenceProfileAlignmentOperationG3FFN6390 edam:has_input signature:MF_04166 ;
rdf:type edam:operation_0300 .
?targetMotifMatch391 faldo:location ?targetMotifMatchRegionMatch392 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04166394 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarG3FFN6MF_04166385 .
?targetMotifMatchRegionMatch392 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04166393 .
?targetMotifMatchRegionMatchBeginMF_04166393 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04166386 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04166394 edam:has_input signature:MF_04166 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarG3FFN6MF_04166383, 1, (STRLEN(?templateMotifCigarG3FFN6MF_04166383) - STRLEN(REPLACE(?templateMotifCigarG3FFN6MF_04166383, CONCAT('^(?:-*[^-]){', STR(((128 - ?templateMotifSequenceMatchBeginPositionG3FFN6384) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1395) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarG3FFN6MF_04166385, 1, (STRLEN(?targetMotifMatchCigarG3FFN6MF_04166385) - STRLEN(REPLACE(?targetMotifMatchCigarG3FFN6MF_04166385, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1395), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarG3FFN6MF_04166385, 1, (STRLEN(?targetMotifMatchCigarG3FFN6MF_04166385) - STRLEN(REPLACE(?targetMotifMatchCigarG3FFN6MF_04166385, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1395), '}'), '')))), '[^-]', ''))) AS ?step2396) .
BIND(((?step2396 + ?targetMotifMatchRegionMatchBeginPositionMF_04166386) - 1) AS ?thisPositionOn117) .
BIND(?thisPositionOn117 AS ?thisPositionOn118) .
BIND(?this AS ?pfs2t397) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn117))) AS ?pfsb114) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn118))) AS ?pfse115) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn117, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_04166a113')) AS ?annotation113) .
BIND(?this AS ?pfs112) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch402 faldo:location ?templateMotifSequenceMatchRegionG3FFN6403 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationG3FFN6405 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarG3FFN6MF_04166398 .
?templateMotifSequenceMatchRegionG3FFN6403 faldo:begin ?templateMotifSequenceMatchBeginG3FFN6404 .
?templateMotifSequenceMatchBeginG3FFN6404 faldo:position ?templateMotifSequenceMatchBeginPositionG3FFN6399 ;
faldo:reference isoform:G3FFN6-1 .
?templateMotifSequenceProfileAlignmentOperationG3FFN6405 edam:has_input signature:MF_04166 ;
rdf:type edam:operation_0300 .
?targetMotifMatch406 faldo:location ?targetMotifMatchRegionMatch407 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04166409 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarG3FFN6MF_04166400 .
?targetMotifMatchRegionMatch407 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04166408 .
?targetMotifMatchRegionMatchBeginMF_04166408 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04166401 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04166409 edam:has_input signature:MF_04166 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarG3FFN6MF_04166398, 1, (STRLEN(?templateMotifCigarG3FFN6MF_04166398) - STRLEN(REPLACE(?templateMotifCigarG3FFN6MF_04166398, CONCAT('^(?:-*[^-]){', STR(((142 - ?templateMotifSequenceMatchBeginPositionG3FFN6399) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1410) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarG3FFN6MF_04166400, 1, (STRLEN(?targetMotifMatchCigarG3FFN6MF_04166400) - STRLEN(REPLACE(?targetMotifMatchCigarG3FFN6MF_04166400, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1410), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarG3FFN6MF_04166400, 1, (STRLEN(?targetMotifMatchCigarG3FFN6MF_04166400) - STRLEN(REPLACE(?targetMotifMatchCigarG3FFN6MF_04166400, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1410), '}'), '')))), '[^-]', ''))) AS ?step2411) .
BIND(((?step2411 + ?targetMotifMatchRegionMatchBeginPositionMF_04166401) - 1) AS ?thisPositionOn124) .
BIND(?thisPositionOn124 AS ?thisPositionOn125) .
BIND(?this AS ?pfs2t412) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn124))) AS ?pfsb121) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn125))) AS ?pfse122) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn124, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_04166a120')) AS ?annotation120) .
BIND(?this AS ?pfs119) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch417 faldo:location ?templateMotifSequenceMatchRegionG3FFN6418 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationG3FFN6420 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarG3FFN6MF_04166413 .
?templateMotifSequenceMatchRegionG3FFN6418 faldo:begin ?templateMotifSequenceMatchBeginG3FFN6419 .
?templateMotifSequenceMatchBeginG3FFN6419 faldo:position ?templateMotifSequenceMatchBeginPositionG3FFN6414 ;
faldo:reference isoform:G3FFN6-1 .
?templateMotifSequenceProfileAlignmentOperationG3FFN6420 edam:has_input signature:MF_04166 ;
rdf:type edam:operation_0300 .
?targetMotifMatch421 faldo:location ?targetMotifMatchRegionMatch422 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04166424 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarG3FFN6MF_04166415 .
?targetMotifMatchRegionMatch422 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04166423 .
?targetMotifMatchRegionMatchBeginMF_04166423 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04166416 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04166424 edam:has_input signature:MF_04166 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarG3FFN6MF_04166413, 1, (STRLEN(?templateMotifCigarG3FFN6MF_04166413) - STRLEN(REPLACE(?templateMotifCigarG3FFN6MF_04166413, CONCAT('^(?:-*[^-]){', STR(((187 - ?templateMotifSequenceMatchBeginPositionG3FFN6414) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1425) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarG3FFN6MF_04166415, 1, (STRLEN(?targetMotifMatchCigarG3FFN6MF_04166415) - STRLEN(REPLACE(?targetMotifMatchCigarG3FFN6MF_04166415, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1425), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarG3FFN6MF_04166415, 1, (STRLEN(?targetMotifMatchCigarG3FFN6MF_04166415) - STRLEN(REPLACE(?targetMotifMatchCigarG3FFN6MF_04166415, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1425), '}'), '')))), '[^-]', ''))) AS ?step2426) .
BIND(((?step2426 + ?targetMotifMatchRegionMatchBeginPositionMF_04166416) - 1) AS ?thisPositionOn131) .
BIND(?thisPositionOn131 AS ?thisPositionOn132) .
BIND(?this AS ?pfs2t427) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn131))) AS ?pfsb128) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn132))) AS ?pfse129) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn131, 1) = 'Q')) .
BIND(URI(CONCAT(STR(?this), '#MF_04166a127')) AS ?annotation127) .
BIND(?this AS ?pfs126) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch432 faldo:location ?templateMotifSequenceMatchRegionG3FFN6433 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationG3FFN6435 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarG3FFN6MF_04166428 .
?templateMotifSequenceMatchRegionG3FFN6433 faldo:begin ?templateMotifSequenceMatchBeginG3FFN6434 .
?templateMotifSequenceMatchBeginG3FFN6434 faldo:position ?templateMotifSequenceMatchBeginPositionG3FFN6429 ;
faldo:reference isoform:G3FFN6-1 .
?templateMotifSequenceProfileAlignmentOperationG3FFN6435 edam:has_input signature:MF_04166 ;
rdf:type edam:operation_0300 .
?targetMotifMatch436 faldo:location ?targetMotifMatchRegionMatch437 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04166439 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarG3FFN6MF_04166430 .
?targetMotifMatchRegionMatch437 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04166438 .
?targetMotifMatchRegionMatchBeginMF_04166438 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04166431 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04166439 edam:has_input signature:MF_04166 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarG3FFN6MF_04166428, 1, (STRLEN(?templateMotifCigarG3FFN6MF_04166428) - STRLEN(REPLACE(?templateMotifCigarG3FFN6MF_04166428, CONCAT('^(?:-*[^-]){', STR(((202 - ?templateMotifSequenceMatchBeginPositionG3FFN6429) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1440) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarG3FFN6MF_04166430, 1, (STRLEN(?targetMotifMatchCigarG3FFN6MF_04166430) - STRLEN(REPLACE(?targetMotifMatchCigarG3FFN6MF_04166430, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1440), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarG3FFN6MF_04166430, 1, (STRLEN(?targetMotifMatchCigarG3FFN6MF_04166430) - STRLEN(REPLACE(?targetMotifMatchCigarG3FFN6MF_04166430, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1440), '}'), '')))), '[^-]', ''))) AS ?step2441) .
BIND(((?step2441 + ?targetMotifMatchRegionMatchBeginPositionMF_04166431) - 1) AS ?thisPositionOn138) .
BIND(?thisPositionOn138 AS ?thisPositionOn139) .
BIND(?this AS ?pfs2t442) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn138))) AS ?pfsb135) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn139))) AS ?pfse136) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn138, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_04166a134')) AS ?annotation134) .
BIND(?this AS ?pfs133) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch447 faldo:location ?templateMotifSequenceMatchRegionG3FFN6448 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationG3FFN6450 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarG3FFN6MF_04166443 .
?templateMotifSequenceMatchRegionG3FFN6448 faldo:begin ?templateMotifSequenceMatchBeginG3FFN6449 .
?templateMotifSequenceMatchBeginG3FFN6449 faldo:position ?templateMotifSequenceMatchBeginPositionG3FFN6444 ;
faldo:reference isoform:G3FFN6-1 .
?templateMotifSequenceProfileAlignmentOperationG3FFN6450 edam:has_input signature:MF_04166 ;
rdf:type edam:operation_0300 .
?targetMotifMatch451 faldo:location ?targetMotifMatchRegionMatch452 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04166454 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarG3FFN6MF_04166445 .
?targetMotifMatchRegionMatch452 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04166453 .
?targetMotifMatchRegionMatchBeginMF_04166453 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04166446 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04166454 edam:has_input signature:MF_04166 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarG3FFN6MF_04166443, 1, (STRLEN(?templateMotifCigarG3FFN6MF_04166443) - STRLEN(REPLACE(?templateMotifCigarG3FFN6MF_04166443, CONCAT('^(?:-*[^-]){', STR(((263 - ?templateMotifSequenceMatchBeginPositionG3FFN6444) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1455) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarG3FFN6MF_04166445, 1, (STRLEN(?targetMotifMatchCigarG3FFN6MF_04166445) - STRLEN(REPLACE(?targetMotifMatchCigarG3FFN6MF_04166445, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1455), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarG3FFN6MF_04166445, 1, (STRLEN(?targetMotifMatchCigarG3FFN6MF_04166445) - STRLEN(REPLACE(?targetMotifMatchCigarG3FFN6MF_04166445, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1455), '}'), '')))), '[^-]', ''))) AS ?step2456) .
BIND(((?step2456 + ?targetMotifMatchRegionMatchBeginPositionMF_04166446) - 1) AS ?thisPositionOn145) .
BIND(?thisPositionOn145 AS ?thisPositionOn146) .
BIND(?this AS ?pfs2t457) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn145))) AS ?pfsb142) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn146))) AS ?pfse143) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn145, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_04166a141')) AS ?annotation141) .
BIND(?this AS ?pfs140) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch462 faldo:location ?templateMotifSequenceMatchRegionG3FFN6463 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationG3FFN6465 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarG3FFN6MF_04166458 .
?templateMotifSequenceMatchRegionG3FFN6463 faldo:begin ?templateMotifSequenceMatchBeginG3FFN6464 .
?templateMotifSequenceMatchBeginG3FFN6464 faldo:position ?templateMotifSequenceMatchBeginPositionG3FFN6459 ;
faldo:reference isoform:G3FFN6-1 .
?templateMotifSequenceProfileAlignmentOperationG3FFN6465 edam:has_input signature:MF_04166 ;
rdf:type edam:operation_0300 .
?targetMotifMatch466 faldo:location ?targetMotifMatchRegionMatch467 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04166469 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarG3FFN6MF_04166460 .
?targetMotifMatchRegionMatch467 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04166468 .
?targetMotifMatchRegionMatchBeginMF_04166468 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04166461 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04166469 edam:has_input signature:MF_04166 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarG3FFN6MF_04166458, 1, (STRLEN(?templateMotifCigarG3FFN6MF_04166458) - STRLEN(REPLACE(?templateMotifCigarG3FFN6MF_04166458, CONCAT('^(?:-*[^-]){', STR(((264 - ?templateMotifSequenceMatchBeginPositionG3FFN6459) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1470) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarG3FFN6MF_04166460, 1, (STRLEN(?targetMotifMatchCigarG3FFN6MF_04166460) - STRLEN(REPLACE(?targetMotifMatchCigarG3FFN6MF_04166460, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1470), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarG3FFN6MF_04166460, 1, (STRLEN(?targetMotifMatchCigarG3FFN6MF_04166460) - STRLEN(REPLACE(?targetMotifMatchCigarG3FFN6MF_04166460, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1470), '}'), '')))), '[^-]', ''))) AS ?step2471) .
BIND(((?step2471 + ?targetMotifMatchRegionMatchBeginPositionMF_04166461) - 1) AS ?thisPositionOn152) .
BIND(?thisPositionOn152 AS ?thisPositionOn153) .
BIND(?this AS ?pfs2t472) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn152))) AS ?pfsb149) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn153))) AS ?pfse150) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn152, 1) = 'V')) .
BIND(URI(CONCAT(STR(?this), '#MF_04166a148')) AS ?annotation148) .
BIND(?this AS ?pfs147) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch477 faldo:location ?templateMotifSequenceMatchRegionG3FFN6478 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationG3FFN6480 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarG3FFN6MF_04166473 .
?templateMotifSequenceMatchRegionG3FFN6478 faldo:begin ?templateMotifSequenceMatchBeginG3FFN6479 .
?templateMotifSequenceMatchBeginG3FFN6479 faldo:position ?templateMotifSequenceMatchBeginPositionG3FFN6474 ;
faldo:reference isoform:G3FFN6-1 .
?templateMotifSequenceProfileAlignmentOperationG3FFN6480 edam:has_input signature:MF_04166 ;
rdf:type edam:operation_0300 .
?targetMotifMatch481 faldo:location ?targetMotifMatchRegionMatch482 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04166484 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarG3FFN6MF_04166475 .
?targetMotifMatchRegionMatch482 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04166483 .
?targetMotifMatchRegionMatchBeginMF_04166483 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04166476 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04166484 edam:has_input signature:MF_04166 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarG3FFN6MF_04166473, 1, (STRLEN(?templateMotifCigarG3FFN6MF_04166473) - STRLEN(REPLACE(?templateMotifCigarG3FFN6MF_04166473, CONCAT('^(?:-*[^-]){', STR(((269 - ?templateMotifSequenceMatchBeginPositionG3FFN6474) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1485) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarG3FFN6MF_04166475, 1, (STRLEN(?targetMotifMatchCigarG3FFN6MF_04166475) - STRLEN(REPLACE(?targetMotifMatchCigarG3FFN6MF_04166475, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1485), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarG3FFN6MF_04166475, 1, (STRLEN(?targetMotifMatchCigarG3FFN6MF_04166475) - STRLEN(REPLACE(?targetMotifMatchCigarG3FFN6MF_04166475, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1485), '}'), '')))), '[^-]', ''))) AS ?step2486) .
BIND(((?step2486 + ?targetMotifMatchRegionMatchBeginPositionMF_04166476) - 1) AS ?thisPositionOn159) .
BIND(?thisPositionOn159 AS ?thisPositionOn160) .
BIND(?this AS ?pfs2t487) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn159))) AS ?pfsb156) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn160))) AS ?pfse157) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn159, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_04166a155')) AS ?annotation155) .
BIND(?this AS ?pfs154) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch492 faldo:location ?templateMotifSequenceMatchRegionG3FFN6493 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationG3FFN6495 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarG3FFN6MF_04166488 .
?templateMotifSequenceMatchRegionG3FFN6493 faldo:begin ?templateMotifSequenceMatchBeginG3FFN6494 .
?templateMotifSequenceMatchBeginG3FFN6494 faldo:position ?templateMotifSequenceMatchBeginPositionG3FFN6489 ;
faldo:reference isoform:G3FFN6-1 .
?templateMotifSequenceProfileAlignmentOperationG3FFN6495 edam:has_input signature:MF_04166 ;
rdf:type edam:operation_0300 .
?targetMotifMatch496 faldo:location ?targetMotifMatchRegionMatch497 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04166499 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarG3FFN6MF_04166490 .
?targetMotifMatchRegionMatch497 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04166498 .
?targetMotifMatchRegionMatchBeginMF_04166498 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04166491 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04166499 edam:has_input signature:MF_04166 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarG3FFN6MF_04166488, 1, (STRLEN(?templateMotifCigarG3FFN6MF_04166488) - STRLEN(REPLACE(?templateMotifCigarG3FFN6MF_04166488, CONCAT('^(?:-*[^-]){', STR(((294 - ?templateMotifSequenceMatchBeginPositionG3FFN6489) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1500) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarG3FFN6MF_04166490, 1, (STRLEN(?targetMotifMatchCigarG3FFN6MF_04166490) - STRLEN(REPLACE(?targetMotifMatchCigarG3FFN6MF_04166490, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1500), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarG3FFN6MF_04166490, 1, (STRLEN(?targetMotifMatchCigarG3FFN6MF_04166490) - STRLEN(REPLACE(?targetMotifMatchCigarG3FFN6MF_04166490, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1500), '}'), '')))), '[^-]', ''))) AS ?step2501) .
BIND(((?step2501 + ?targetMotifMatchRegionMatchBeginPositionMF_04166491) - 1) AS ?thisPositionOn166) .
BIND(?thisPositionOn166 AS ?thisPositionOn167) .
BIND(?this AS ?pfs2t502) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn166))) AS ?pfsb163) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn167))) AS ?pfse164) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn166, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_04166a162')) AS ?annotation162) .
BIND(?this AS ?pfs161) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch507 faldo:location ?templateMotifSequenceMatchRegionG3FFN6508 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationG3FFN6510 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarG3FFN6MF_04166503 .
?templateMotifSequenceMatchRegionG3FFN6508 faldo:begin ?templateMotifSequenceMatchBeginG3FFN6509 .
?templateMotifSequenceMatchBeginG3FFN6509 faldo:position ?templateMotifSequenceMatchBeginPositionG3FFN6504 ;
faldo:reference isoform:G3FFN6-1 .
?templateMotifSequenceProfileAlignmentOperationG3FFN6510 edam:has_input signature:MF_04166 ;
rdf:type edam:operation_0300 .
?targetMotifMatch511 faldo:location ?targetMotifMatchRegionMatch512 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04166514 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarG3FFN6MF_04166505 .
?targetMotifMatchRegionMatch512 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04166513 .
?targetMotifMatchRegionMatchBeginMF_04166513 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04166506 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04166514 edam:has_input signature:MF_04166 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarG3FFN6MF_04166503, 1, (STRLEN(?templateMotifCigarG3FFN6MF_04166503) - STRLEN(REPLACE(?templateMotifCigarG3FFN6MF_04166503, CONCAT('^(?:-*[^-]){', STR(((297 - ?templateMotifSequenceMatchBeginPositionG3FFN6504) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1515) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarG3FFN6MF_04166505, 1, (STRLEN(?targetMotifMatchCigarG3FFN6MF_04166505) - STRLEN(REPLACE(?targetMotifMatchCigarG3FFN6MF_04166505, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1515), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarG3FFN6MF_04166505, 1, (STRLEN(?targetMotifMatchCigarG3FFN6MF_04166505) - STRLEN(REPLACE(?targetMotifMatchCigarG3FFN6MF_04166505, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1515), '}'), '')))), '[^-]', ''))) AS ?step2516) .
BIND(((?step2516 + ?targetMotifMatchRegionMatchBeginPositionMF_04166506) - 1) AS ?thisPositionOn173) .
BIND(?thisPositionOn173 AS ?thisPositionOn174) .
BIND(?this AS ?pfs2t517) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn173))) AS ?pfsb170) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn174))) AS ?pfse171) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn173, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_04166a169')) AS ?annotation169) .
BIND(?this AS ?pfs168) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch522 faldo:location ?templateMotifSequenceMatchRegionG3FFN6523 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationG3FFN6525 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarG3FFN6MF_04166518 .
?templateMotifSequenceMatchRegionG3FFN6523 faldo:begin ?templateMotifSequenceMatchBeginG3FFN6524 .
?templateMotifSequenceMatchBeginG3FFN6524 faldo:position ?templateMotifSequenceMatchBeginPositionG3FFN6519 ;
faldo:reference isoform:G3FFN6-1 .
?templateMotifSequenceProfileAlignmentOperationG3FFN6525 edam:has_input signature:MF_04166 ;
rdf:type edam:operation_0300 .
?targetMotifMatch526 faldo:location ?targetMotifMatchRegionMatch527 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04166529 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarG3FFN6MF_04166520 .
?targetMotifMatchRegionMatch527 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04166528 .
?targetMotifMatchRegionMatchBeginMF_04166528 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04166521 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04166529 edam:has_input signature:MF_04166 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarG3FFN6MF_04166518, 1, (STRLEN(?templateMotifCigarG3FFN6MF_04166518) - STRLEN(REPLACE(?templateMotifCigarG3FFN6MF_04166518, CONCAT('^(?:-*[^-]){', STR(((330 - ?templateMotifSequenceMatchBeginPositionG3FFN6519) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1530) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarG3FFN6MF_04166520, 1, (STRLEN(?targetMotifMatchCigarG3FFN6MF_04166520) - STRLEN(REPLACE(?targetMotifMatchCigarG3FFN6MF_04166520, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1530), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarG3FFN6MF_04166520, 1, (STRLEN(?targetMotifMatchCigarG3FFN6MF_04166520) - STRLEN(REPLACE(?targetMotifMatchCigarG3FFN6MF_04166520, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1530), '}'), '')))), '[^-]', ''))) AS ?step2531) .
BIND(((?step2531 + ?targetMotifMatchRegionMatchBeginPositionMF_04166521) - 1) AS ?thisPositionOn180) .
BIND(?thisPositionOn180 AS ?thisPositionOn181) .
BIND(?this AS ?pfs2t532) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn180))) AS ?pfsb177) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn181))) AS ?pfse178) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn180, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_04166a176')) AS ?annotation176) .
BIND(?this AS ?pfs175) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag533) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag533, ?UNBOUND_VARIABLE) AS ?case9) .
}
"xsd:string |
