| http://purl.uniprot.org/unirules/MF_00191#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:78818 up:source unirule:MF_00191 .
_:78819 up:source unirule:MF_00191 .
_:78820 up:source unirule:MF_00191 .
_:78821 up:source unirule:MF_00191 .
_:78822 up:source unirule:MF_00191 .
_:78823 up:source unirule:MF_00191 .
_:78824 up:source unirule:MF_00191 .
_:78825 up:source unirule:MF_00191 .
_:78826 up:source unirule:MF_00191 .
_:78827 up:source unirule:MF_00191 .
_:78828 up:source unirule:MF_00191 .
_:78829 up:source unirule:MF_00191 .
_:78830 up:source unirule:MF_00191 .
_:78831 up:source unirule:MF_00191 .
_:78832 up:source unirule:MF_00191 .
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_:78834 up:source unirule:MF_00191 .
_:78835 up:source unirule:MF_00191 .
_:78836 up:source unirule:MF_00191 .
_:78837 up:source unirule:MF_00191 .
_:78838 up:source unirule:MF_00191 .
_:78839 up:source unirule:MF_00191 .
_:78840 up:source unirule:MF_00191 .
_:78841 up:source unirule:MF_00191 .
_:78842 up:source unirule:MF_00191 .
_:78843 up:source unirule:MF_00191 .
_:78844 up:source unirule:MF_00191 .
_:78845 up:source unirule:MF_00191 .
_:78846 up:source unirule:MF_00191 .
_:78847 up:source unirule:MF_00191 .
_:78848 up:source unirule:MF_00191 .
_:78849 up:source unirule:MF_00191 .
_:78850 up:source unirule:MF_00191 .
_:78851 up:source unirule:MF_00191 .
_:78852 up:source unirule:MF_00191 .
_:78853 up:source unirule:MF_00191 .
_:78854 up:source unirule:MF_00191 .
_:78855 up:source unirule:MF_00191 .
_:78856 up:source unirule:MF_00191 .
_:78857 up:source unirule:MF_00191 .
_:78858 up:source unirule:MF_00191 .
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_:78860 up:source unirule:MF_00191 .
_:78861 up:source unirule:MF_00191 .
_:78862 up:source unirule:MF_00191 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation7 ,
?annotation8 ,
?annotation9 ;
up:classifiedWith GO:0016114 ,
GO:0019288 ,
GO:0050992 ,
GO:0051745 ,
keyword:414 ,
keyword:560 ;
up:recommendedName ?name0 .
?name0 up:ecName '1.17.7.4' ;
up:fullName '4-hydroxy-3-methylbut-2-enyl diphosphate reductase' ;
up:shortName 'HMBPP reductase' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'ispH' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis.' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity ;
up:enzymeClass .
?annotation7 a up:Pathway_Annotation ;
rdfs:comment 'Isoprenoid biosynthesis; dimethylallyl diphosphate biosynthesis; dimethylallyl diphosphate from (2E)-4-hydroxy-3-methylbutenyl diphosphate: step 1/1.' .
?annotation8 a up:Pathway_Annotation ;
rdfs:comment 'Isoprenoid biosynthesis; isopentenyl diphosphate biosynthesis via DXP pathway; isopentenyl diphosphate from 1-deoxy-D-xylulose 5-phosphate: step 6/6.' .
?annotation9 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the IspH family.' .
?case10 up:classifiedWith GO:0051539 ,
keyword:408 ,
keyword:411 ,
keyword:479 ,
keyword:4 .
?pfs12 up:annotation ?annotation13 ,
?annotation19 ,
?annotation25 .
?annotation13 faldo:begin ?pfsb14 ;
faldo:end ?pfse15 ;
up:ligand ?ligand16 ;
rdf:type up:Binding_Site_Annotation .
?pfsb14 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse15 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?ligand16 rdfs:subClassOf chebi:49883 .
?annotation19 faldo:begin ?pfsb20 ;
faldo:end ?pfse21 ;
up:ligand ?ligand22 ;
rdf:type up:Binding_Site_Annotation .
?pfsb20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfse21 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?ligand22 rdfs:subClassOf chebi:49883 .
?annotation25 faldo:begin ?pfsb26 ;
faldo:end ?pfse27 ;
up:ligand ?ligand28 ;
rdf:type up:Binding_Site_Annotation .
?pfsb26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?pfse27 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?ligand28 rdfs:subClassOf chebi:49883 .
?pfs31 up:annotation ?annotation32 .
?annotation32 faldo:begin ?pfsb33 ;
faldo:end ?pfse34 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton donor' .
?pfsb33 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?pfse34 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?pfs37 up:annotation ?annotation38 .
?annotation38 faldo:begin ?pfsb39 ;
faldo:end ?pfse40 ;
up:ligand ?ligand41 ;
rdf:type up:Binding_Site_Annotation .
?pfsb39 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?pfse40 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?ligand41 rdfs:subClassOf chebi:128753 .
?pfs44 up:annotation ?annotation45 .
?annotation45 faldo:begin ?pfsb46 ;
faldo:end ?pfse47 ;
up:ligand ?ligand48 ;
rdf:type up:Binding_Site_Annotation .
?pfsb46 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?pfse47 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?ligand48 rdfs:subClassOf chebi:57623 .
?pfs51 up:annotation ?annotation52 .
?annotation52 faldo:begin ?pfsb53 ;
faldo:end ?pfse54 ;
up:ligand ?ligand55 ;
rdf:type up:Binding_Site_Annotation .
?pfsb53 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?pfse54 faldo:position ?thisPositionOn57 ;
rdf:type faldo:ExactPosition .
?ligand55 rdfs:subClassOf chebi:128769 .
?pfs58 up:annotation ?annotation59 .
?annotation59 faldo:begin ?pfsb60 ;
faldo:end ?pfse61 ;
up:ligand ?ligand62 ;
rdf:type up:Binding_Site_Annotation .
?pfsb60 faldo:position ?thisPositionOn63 ;
rdf:type faldo:ExactPosition .
?pfse61 faldo:position ?thisPositionOn64 ;
rdf:type faldo:ExactPosition .
?ligand62 rdfs:subClassOf chebi:128753 .
?pfs65 up:annotation ?annotation66 .
?annotation66 faldo:begin ?pfsb67 ;
faldo:end ?pfse68 ;
up:ligand ?ligand69 ;
rdf:type up:Binding_Site_Annotation .
?pfsb67 faldo:position ?thisPositionOn70 ;
rdf:type faldo:ExactPosition .
?pfse68 faldo:position ?thisPositionOn71 ;
rdf:type faldo:ExactPosition .
?ligand69 rdfs:subClassOf chebi:57623 .
?pfs72 up:annotation ?annotation73 .
?annotation73 faldo:begin ?pfsb74 ;
faldo:end ?pfse75 ;
up:ligand ?ligand76 ;
rdf:type up:Binding_Site_Annotation .
?pfsb74 faldo:position ?thisPositionOn77 ;
rdf:type faldo:ExactPosition .
?pfse75 faldo:position ?thisPositionOn78 ;
rdf:type faldo:ExactPosition .
?ligand76 rdfs:subClassOf chebi:128769 .
?pfs79 up:annotation ?annotation80 .
?annotation80 faldo:begin ?pfsb81 ;
faldo:end ?pfse82 ;
up:ligand ?ligand83 ;
rdf:type up:Binding_Site_Annotation .
?pfsb81 faldo:position ?thisPositionOn84 ;
rdf:type faldo:ExactPosition .
?pfse82 faldo:position ?thisPositionOn85 ;
rdf:type faldo:ExactPosition .
?ligand83 rdfs:subClassOf chebi:128753 .
?pfs86 up:annotation ?annotation87 .
?annotation87 faldo:begin ?pfsb88 ;
faldo:end ?pfse89 ;
up:ligand ?ligand90 ;
rdf:type up:Binding_Site_Annotation .
?pfsb88 faldo:position ?thisPositionOn91 ;
rdf:type faldo:ExactPosition .
?pfse89 faldo:position ?thisPositionOn92 ;
rdf:type faldo:ExactPosition .
?ligand90 rdfs:subClassOf chebi:57623 .
?pfs93 up:annotation ?annotation94 .
?annotation94 faldo:begin ?pfsb95 ;
faldo:end ?pfse96 ;
up:ligand ?ligand97 ;
rdf:type up:Binding_Site_Annotation .
?pfsb95 faldo:position ?thisPositionOn98 ;
rdf:type faldo:ExactPosition .
?pfse96 faldo:position ?thisPositionOn99 ;
rdf:type faldo:ExactPosition .
?ligand97 rdfs:subClassOf chebi:128769 .
?pfs100 up:annotation ?annotation101 .
?annotation101 faldo:begin ?pfsb102 ;
faldo:end ?pfse103 ;
up:ligand ?ligand104 ;
rdf:type up:Binding_Site_Annotation .
?pfsb102 faldo:position ?thisPositionOn105 ;
rdf:type faldo:ExactPosition .
?pfse103 faldo:position ?thisPositionOn106 ;
rdf:type faldo:ExactPosition .
?ligand104 rdfs:subClassOf chebi:128753 .
?pfs107 up:annotation ?annotation108 .
?annotation108 faldo:begin ?pfsb109 ;
faldo:end ?pfse110 ;
up:ligand ?ligand111 ;
rdf:type up:Binding_Site_Annotation .
?pfsb109 faldo:position ?thisPositionOn112 ;
rdf:type faldo:ExactPosition .
?pfse110 faldo:position ?thisPositionOn113 ;
rdf:type faldo:ExactPosition .
?ligand111 rdfs:subClassOf chebi:128753 .
?pfs114 up:annotation ?annotation115 .
?annotation115 faldo:begin ?pfsb116 ;
faldo:end ?pfse117 ;
up:ligand ?ligand118 ;
rdf:type up:Binding_Site_Annotation .
?pfsb116 faldo:position ?thisPositionOn119 ;
rdf:type faldo:ExactPosition .
?pfse117 faldo:position ?thisPositionOn120 ;
rdf:type faldo:ExactPosition .
?ligand118 rdfs:subClassOf chebi:57623 .
?pfs121 up:annotation ?annotation122 .
?annotation122 faldo:begin ?pfsb123 ;
faldo:end ?pfse124 ;
up:ligand ?ligand125 ;
rdf:type up:Binding_Site_Annotation .
?pfsb123 faldo:position ?thisPositionOn126 ;
rdf:type faldo:ExactPosition .
?pfse124 faldo:position ?thisPositionOn127 ;
rdf:type faldo:ExactPosition .
?ligand125 rdfs:subClassOf chebi:128769 .
?pfs128 up:annotation ?annotation129 .
?annotation129 faldo:begin ?pfsb130 ;
faldo:end ?pfse131 ;
up:ligand ?ligand132 ;
rdf:type up:Binding_Site_Annotation .
?pfsb130 faldo:position ?thisPositionOn133 ;
rdf:type faldo:ExactPosition .
?pfse131 faldo:position ?thisPositionOn134 ;
rdf:type faldo:ExactPosition .
?ligand132 rdfs:subClassOf chebi:128753 .
?pfs135 up:annotation ?annotation136 .
?annotation136 faldo:begin ?pfsb137 ;
faldo:end ?pfse138 ;
up:ligand ?ligand139 ;
rdf:type up:Binding_Site_Annotation .
?pfsb137 faldo:position ?thisPositionOn140 ;
rdf:type faldo:ExactPosition .
?pfse138 faldo:position ?thisPositionOn141 ;
rdf:type faldo:ExactPosition .
?ligand139 rdfs:subClassOf chebi:57623 .
?pfs142 up:annotation ?annotation143 .
?annotation143 faldo:begin ?pfsb144 ;
faldo:end ?pfse145 ;
up:ligand ?ligand146 ;
rdf:type up:Binding_Site_Annotation .
?pfsb144 faldo:position ?thisPositionOn147 ;
rdf:type faldo:ExactPosition .
?pfse145 faldo:position ?thisPositionOn148 ;
rdf:type faldo:ExactPosition .
?ligand146 rdfs:subClassOf chebi:128769 .
?pfs149 up:annotation ?annotation150 .
?annotation150 faldo:begin ?pfsb151 ;
faldo:end ?pfse152 ;
up:ligand ?ligand153 ;
rdf:type up:Binding_Site_Annotation .
?pfsb151 faldo:position ?thisPositionOn154 ;
rdf:type faldo:ExactPosition .
?pfse152 faldo:position ?thisPositionOn155 ;
rdf:type faldo:ExactPosition .
?ligand153 rdfs:subClassOf chebi:128753 .
?pfs156 up:annotation ?annotation157 .
?annotation157 faldo:begin ?pfsb158 ;
faldo:end ?pfse159 ;
up:ligand ?ligand160 ;
rdf:type up:Binding_Site_Annotation .
?pfsb158 faldo:position ?thisPositionOn161 ;
rdf:type faldo:ExactPosition .
?pfse159 faldo:position ?thisPositionOn162 ;
rdf:type faldo:ExactPosition .
?ligand160 rdfs:subClassOf chebi:57623 .
?pfs163 up:annotation ?annotation164 .
?annotation164 faldo:begin ?pfsb165 ;
faldo:end ?pfse166 ;
up:ligand ?ligand167 ;
rdf:type up:Binding_Site_Annotation .
?pfsb165 faldo:position ?thisPositionOn168 ;
rdf:type faldo:ExactPosition .
?pfse166 faldo:position ?thisPositionOn169 ;
rdf:type faldo:ExactPosition .
?ligand167 rdfs:subClassOf chebi:128769 .
?pfs170 up:annotation ?annotation171 .
?annotation171 faldo:begin ?pfsb172 ;
faldo:end ?pfse173 ;
up:ligand ?ligand174 ;
rdf:type up:Binding_Site_Annotation .
?pfsb172 faldo:position ?thisPositionOn175 ;
rdf:type faldo:ExactPosition .
?pfse173 faldo:position ?thisPositionOn176 ;
rdf:type faldo:ExactPosition .
?ligand174 rdfs:subClassOf chebi:128753 .
?pfs177 up:annotation ?annotation178 .
?annotation178 faldo:begin ?pfsb179 ;
faldo:end ?pfse180 ;
up:ligand ?ligand181 ;
rdf:type up:Binding_Site_Annotation .
?pfsb179 faldo:position ?thisPositionOn182 ;
rdf:type faldo:ExactPosition .
?pfse180 faldo:position ?thisPositionOn183 ;
rdf:type faldo:ExactPosition .
?ligand181 rdfs:subClassOf chebi:57623 .
?pfs184 up:annotation ?annotation185 .
?annotation185 faldo:begin ?pfsb186 ;
faldo:end ?pfse187 ;
up:ligand ?ligand188 ;
rdf:type up:Binding_Site_Annotation .
?pfsb186 faldo:position ?thisPositionOn189 ;
rdf:type faldo:ExactPosition .
?pfse187 faldo:position ?thisPositionOn190 ;
rdf:type faldo:ExactPosition .
?ligand188 rdfs:subClassOf chebi:128769 .
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up:attribution _:78818 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
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up:attribution _:78819 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:78865 a rdf:Statement ;
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rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
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rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
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rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
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rdf:subject ?this ;
rdf:predicate up:annotation ;
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rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
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rdf:subject ?this ;
rdf:predicate up:annotation ;
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rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:414 .
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rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:560 .
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rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0051745 .
_:78874 a rdf:Statement ;
up:attribution _:78829 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019288 .
_:78875 a rdf:Statement ;
up:attribution _:78830 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016114 .
_:78876 a rdf:Statement ;
up:attribution _:78831 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0050992 .
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up:attribution _:78832 ;
rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:4 .
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rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:408 .
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rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:411 .
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rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
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rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0051539 .
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rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
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rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
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rdf:subject ?pfs12 ;
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rdf:subject ?pfs31 ;
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rdf:predicate up:annotation ;
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rdf:predicate up:annotation ;
rdf:object ?annotation129 .
_:78918 a rdf:Statement ;
up:source unirule:MF_00191 ;
rdf:subject ?pfs135 ;
rdf:predicate up:annotation ;
rdf:object ?annotation136 .
_:78919 a rdf:Statement ;
up:attribution _:78855 ;
rdf:subject ?pfs135 ;
rdf:predicate up:annotation ;
rdf:object ?annotation136 .
_:78920 a rdf:Statement ;
up:source unirule:MF_00191 ;
rdf:subject ?pfs142 ;
rdf:predicate up:annotation ;
rdf:object ?annotation143 .
_:78921 a rdf:Statement ;
up:attribution _:78856 ;
rdf:subject ?pfs142 ;
rdf:predicate up:annotation ;
rdf:object ?annotation143 .
_:78922 a rdf:Statement ;
up:source unirule:MF_00191 ;
rdf:subject ?pfs149 ;
rdf:predicate up:annotation ;
rdf:object ?annotation150 .
_:78923 a rdf:Statement ;
up:attribution _:78857 ;
rdf:subject ?pfs149 ;
rdf:predicate up:annotation ;
rdf:object ?annotation150 .
_:78924 a rdf:Statement ;
up:source unirule:MF_00191 ;
rdf:subject ?pfs156 ;
rdf:predicate up:annotation ;
rdf:object ?annotation157 .
_:78925 a rdf:Statement ;
up:attribution _:78858 ;
rdf:subject ?pfs156 ;
rdf:predicate up:annotation ;
rdf:object ?annotation157 .
_:78926 a rdf:Statement ;
up:source unirule:MF_00191 ;
rdf:subject ?pfs163 ;
rdf:predicate up:annotation ;
rdf:object ?annotation164 .
_:78927 a rdf:Statement ;
up:attribution _:78859 ;
rdf:subject ?pfs163 ;
rdf:predicate up:annotation ;
rdf:object ?annotation164 .
_:78928 a rdf:Statement ;
up:source unirule:MF_00191 ;
rdf:subject ?pfs170 ;
rdf:predicate up:annotation ;
rdf:object ?annotation171 .
_:78929 a rdf:Statement ;
up:attribution _:78860 ;
rdf:subject ?pfs170 ;
rdf:predicate up:annotation ;
rdf:object ?annotation171 .
_:78930 a rdf:Statement ;
up:source unirule:MF_00191 ;
rdf:subject ?pfs177 ;
rdf:predicate up:annotation ;
rdf:object ?annotation178 .
_:78931 a rdf:Statement ;
up:attribution _:78861 ;
rdf:subject ?pfs177 ;
rdf:predicate up:annotation ;
rdf:object ?annotation178 .
_:78932 a rdf:Statement ;
up:source unirule:MF_00191 ;
rdf:subject ?pfs184 ;
rdf:predicate up:annotation ;
rdf:object ?annotation185 .
_:78933 a rdf:Statement ;
up:attribution _:78862 ;
rdf:subject ?pfs184 ;
rdf:predicate up:annotation ;
rdf:object ?annotation185 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00191
#Rule MF_00191 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-02
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00191 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_00191a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00191a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_00191a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00191a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00191a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_00191a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_00191a9')) AS ?annotation9) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch195 faldo:location ?templateMotifSequenceMatchRegionP62623196 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP62623198 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP62623MF_00191191 .
?templateMotifSequenceMatchRegionP62623196 faldo:begin ?templateMotifSequenceMatchBeginP62623197 .
?templateMotifSequenceMatchBeginP62623197 faldo:position ?templateMotifSequenceMatchBeginPositionP62623192 ;
faldo:reference isoform:P62623-1 .
?templateMotifSequenceProfileAlignmentOperationP62623198 edam:has_input signature:MF_00191 ;
rdf:type edam:operation_0300 .
?targetMotifMatch199 faldo:location ?targetMotifMatchRegionMatch200 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00191202 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP62623MF_00191193 .
?targetMotifMatchRegionMatch200 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00191201 .
?targetMotifMatchRegionMatchBeginMF_00191201 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00191194 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00191202 edam:has_input signature:MF_00191 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP62623MF_00191191, 1, (STRLEN(?templateMotifCigarP62623MF_00191191) - STRLEN(REPLACE(?templateMotifCigarP62623MF_00191191, CONCAT('^(?:-*[^-]){', STR(((12 - ?templateMotifSequenceMatchBeginPositionP62623192) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1203) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP62623MF_00191193, 1, (STRLEN(?targetMotifMatchCigarP62623MF_00191193) - STRLEN(REPLACE(?targetMotifMatchCigarP62623MF_00191193, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1203), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP62623MF_00191193, 1, (STRLEN(?targetMotifMatchCigarP62623MF_00191193) - STRLEN(REPLACE(?targetMotifMatchCigarP62623MF_00191193, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1203), '}'), '')))), '[^-]', ''))) AS ?step2204) .
BIND(((?step2204 + ?targetMotifMatchRegionMatchBeginPositionMF_00191194) - 1) AS ?thisPositionOn17) .
BIND(?thisPositionOn17 AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t205) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb14) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse15) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn17, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP62623MF_00191191, 1, (STRLEN(?templateMotifCigarP62623MF_00191191) - STRLEN(REPLACE(?templateMotifCigarP62623MF_00191191, CONCAT('^(?:-*[^-]){', STR(((96 - ?templateMotifSequenceMatchBeginPositionP62623192) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1206) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP62623MF_00191193, 1, (STRLEN(?targetMotifMatchCigarP62623MF_00191193) - STRLEN(REPLACE(?targetMotifMatchCigarP62623MF_00191193, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1206), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP62623MF_00191193, 1, (STRLEN(?targetMotifMatchCigarP62623MF_00191193) - STRLEN(REPLACE(?targetMotifMatchCigarP62623MF_00191193, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1206), '}'), '')))), '[^-]', ''))) AS ?step2207) .
BIND(((?step2207 + ?targetMotifMatchRegionMatchBeginPositionMF_00191194) - 1) AS ?thisPositionOn23) .
BIND(?thisPositionOn23 AS ?thisPositionOn24) .
BIND(?this AS ?pfs1t208) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb20) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse21) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn23, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP62623MF_00191191, 1, (STRLEN(?templateMotifCigarP62623MF_00191191) - STRLEN(REPLACE(?templateMotifCigarP62623MF_00191191, CONCAT('^(?:-*[^-]){', STR(((197 - ?templateMotifSequenceMatchBeginPositionP62623192) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1209) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP62623MF_00191193, 1, (STRLEN(?targetMotifMatchCigarP62623MF_00191193) - STRLEN(REPLACE(?targetMotifMatchCigarP62623MF_00191193, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1209), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP62623MF_00191193, 1, (STRLEN(?targetMotifMatchCigarP62623MF_00191193) - STRLEN(REPLACE(?targetMotifMatchCigarP62623MF_00191193, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1209), '}'), '')))), '[^-]', ''))) AS ?step2210) .
BIND(((?step2210 + ?targetMotifMatchRegionMatchBeginPositionMF_00191194) - 1) AS ?thisPositionOn29) .
BIND(?thisPositionOn29 AS ?thisPositionOn30) .
BIND(?this AS ?pfs1t211) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb26) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse27) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn29, 1) = 'C')) .
BIND(?this AS ?pfs12) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch216 faldo:location ?templateMotifSequenceMatchRegionP62623217 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP62623219 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP62623MF_00191212 .
?templateMotifSequenceMatchRegionP62623217 faldo:begin ?templateMotifSequenceMatchBeginP62623218 .
?templateMotifSequenceMatchBeginP62623218 faldo:position ?templateMotifSequenceMatchBeginPositionP62623213 ;
faldo:reference isoform:P62623-1 .
?templateMotifSequenceProfileAlignmentOperationP62623219 edam:has_input signature:MF_00191 ;
rdf:type edam:operation_0300 .
?targetMotifMatch220 faldo:location ?targetMotifMatchRegionMatch221 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00191223 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP62623MF_00191214 .
?targetMotifMatchRegionMatch221 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00191222 .
?targetMotifMatchRegionMatchBeginMF_00191222 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00191215 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00191223 edam:has_input signature:MF_00191 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP62623MF_00191212, 1, (STRLEN(?templateMotifCigarP62623MF_00191212) - STRLEN(REPLACE(?templateMotifCigarP62623MF_00191212, CONCAT('^(?:-*[^-]){', STR(((126 - ?templateMotifSequenceMatchBeginPositionP62623213) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1224) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP62623MF_00191214, 1, (STRLEN(?targetMotifMatchCigarP62623MF_00191214) - STRLEN(REPLACE(?targetMotifMatchCigarP62623MF_00191214, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1224), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP62623MF_00191214, 1, (STRLEN(?targetMotifMatchCigarP62623MF_00191214) - STRLEN(REPLACE(?targetMotifMatchCigarP62623MF_00191214, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1224), '}'), '')))), '[^-]', ''))) AS ?step2225) .
BIND(((?step2225 + ?targetMotifMatchRegionMatchBeginPositionMF_00191215) - 1) AS ?thisPositionOn35) .
BIND(?thisPositionOn35 AS ?thisPositionOn36) .
BIND(?this AS ?pfs2t226) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfsb33) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfse34) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn35, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_00191a32')) AS ?annotation32) .
BIND(?this AS ?pfs31) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch231 faldo:location ?templateMotifSequenceMatchRegionP62623232 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP62623234 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP62623MF_00191227 .
?templateMotifSequenceMatchRegionP62623232 faldo:begin ?templateMotifSequenceMatchBeginP62623233 .
?templateMotifSequenceMatchBeginP62623233 faldo:position ?templateMotifSequenceMatchBeginPositionP62623228 ;
faldo:reference isoform:P62623-1 .
?templateMotifSequenceProfileAlignmentOperationP62623234 edam:has_input signature:MF_00191 ;
rdf:type edam:operation_0300 .
?targetMotifMatch235 faldo:location ?targetMotifMatchRegionMatch236 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00191238 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP62623MF_00191229 .
?targetMotifMatchRegionMatch236 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00191237 .
?targetMotifMatchRegionMatchBeginMF_00191237 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00191230 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00191238 edam:has_input signature:MF_00191 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP62623MF_00191227, 1, (STRLEN(?templateMotifCigarP62623MF_00191227) - STRLEN(REPLACE(?templateMotifCigarP62623MF_00191227, CONCAT('^(?:-*[^-]){', STR(((41 - ?templateMotifSequenceMatchBeginPositionP62623228) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1239) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP62623MF_00191229, 1, (STRLEN(?targetMotifMatchCigarP62623MF_00191229) - STRLEN(REPLACE(?targetMotifMatchCigarP62623MF_00191229, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1239), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP62623MF_00191229, 1, (STRLEN(?targetMotifMatchCigarP62623MF_00191229) - STRLEN(REPLACE(?targetMotifMatchCigarP62623MF_00191229, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1239), '}'), '')))), '[^-]', ''))) AS ?step2240) .
BIND(((?step2240 + ?targetMotifMatchRegionMatchBeginPositionMF_00191230) - 1) AS ?thisPositionOn42) .
BIND(?thisPositionOn42 AS ?thisPositionOn43) .
BIND(?this AS ?pfs2t241) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb39) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse40) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn42, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00191a38')) AS ?annotation38) .
BIND(?this AS ?pfs37) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch246 faldo:location ?templateMotifSequenceMatchRegionP62623247 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP62623249 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP62623MF_00191242 .
?templateMotifSequenceMatchRegionP62623247 faldo:begin ?templateMotifSequenceMatchBeginP62623248 .
?templateMotifSequenceMatchBeginP62623248 faldo:position ?templateMotifSequenceMatchBeginPositionP62623243 ;
faldo:reference isoform:P62623-1 .
?templateMotifSequenceProfileAlignmentOperationP62623249 edam:has_input signature:MF_00191 ;
rdf:type edam:operation_0300 .
?targetMotifMatch250 faldo:location ?targetMotifMatchRegionMatch251 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00191253 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP62623MF_00191244 .
?targetMotifMatchRegionMatch251 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00191252 .
?targetMotifMatchRegionMatchBeginMF_00191252 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00191245 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00191253 edam:has_input signature:MF_00191 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP62623MF_00191242, 1, (STRLEN(?templateMotifCigarP62623MF_00191242) - STRLEN(REPLACE(?templateMotifCigarP62623MF_00191242, CONCAT('^(?:-*[^-]){', STR(((41 - ?templateMotifSequenceMatchBeginPositionP62623243) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1254) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP62623MF_00191244, 1, (STRLEN(?targetMotifMatchCigarP62623MF_00191244) - STRLEN(REPLACE(?targetMotifMatchCigarP62623MF_00191244, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1254), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP62623MF_00191244, 1, (STRLEN(?targetMotifMatchCigarP62623MF_00191244) - STRLEN(REPLACE(?targetMotifMatchCigarP62623MF_00191244, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1254), '}'), '')))), '[^-]', ''))) AS ?step2255) .
BIND(((?step2255 + ?targetMotifMatchRegionMatchBeginPositionMF_00191245) - 1) AS ?thisPositionOn49) .
BIND(?thisPositionOn49 AS ?thisPositionOn50) .
BIND(?this AS ?pfs2t256) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfsb46) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfse47) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn49, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00191a45')) AS ?annotation45) .
BIND(?this AS ?pfs44) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch261 faldo:location ?templateMotifSequenceMatchRegionP62623262 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP62623264 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP62623MF_00191257 .
?templateMotifSequenceMatchRegionP62623262 faldo:begin ?templateMotifSequenceMatchBeginP62623263 .
?templateMotifSequenceMatchBeginP62623263 faldo:position ?templateMotifSequenceMatchBeginPositionP62623258 ;
faldo:reference isoform:P62623-1 .
?templateMotifSequenceProfileAlignmentOperationP62623264 edam:has_input signature:MF_00191 ;
rdf:type edam:operation_0300 .
?targetMotifMatch265 faldo:location ?targetMotifMatchRegionMatch266 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00191268 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP62623MF_00191259 .
?targetMotifMatchRegionMatch266 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00191267 .
?targetMotifMatchRegionMatchBeginMF_00191267 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00191260 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00191268 edam:has_input signature:MF_00191 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP62623MF_00191257, 1, (STRLEN(?templateMotifCigarP62623MF_00191257) - STRLEN(REPLACE(?templateMotifCigarP62623MF_00191257, CONCAT('^(?:-*[^-]){', STR(((41 - ?templateMotifSequenceMatchBeginPositionP62623258) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1269) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP62623MF_00191259, 1, (STRLEN(?targetMotifMatchCigarP62623MF_00191259) - STRLEN(REPLACE(?targetMotifMatchCigarP62623MF_00191259, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1269), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP62623MF_00191259, 1, (STRLEN(?targetMotifMatchCigarP62623MF_00191259) - STRLEN(REPLACE(?targetMotifMatchCigarP62623MF_00191259, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1269), '}'), '')))), '[^-]', ''))) AS ?step2270) .
BIND(((?step2270 + ?targetMotifMatchRegionMatchBeginPositionMF_00191260) - 1) AS ?thisPositionOn56) .
BIND(?thisPositionOn56 AS ?thisPositionOn57) .
BIND(?this AS ?pfs2t271) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfsb53) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfse54) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn56, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00191a52')) AS ?annotation52) .
BIND(?this AS ?pfs51) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch276 faldo:location ?templateMotifSequenceMatchRegionP62623277 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP62623279 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP62623MF_00191272 .
?templateMotifSequenceMatchRegionP62623277 faldo:begin ?templateMotifSequenceMatchBeginP62623278 .
?templateMotifSequenceMatchBeginP62623278 faldo:position ?templateMotifSequenceMatchBeginPositionP62623273 ;
faldo:reference isoform:P62623-1 .
?templateMotifSequenceProfileAlignmentOperationP62623279 edam:has_input signature:MF_00191 ;
rdf:type edam:operation_0300 .
?targetMotifMatch280 faldo:location ?targetMotifMatchRegionMatch281 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00191283 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP62623MF_00191274 .
?targetMotifMatchRegionMatch281 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00191282 .
?targetMotifMatchRegionMatchBeginMF_00191282 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00191275 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00191283 edam:has_input signature:MF_00191 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP62623MF_00191272, 1, (STRLEN(?templateMotifCigarP62623MF_00191272) - STRLEN(REPLACE(?templateMotifCigarP62623MF_00191272, CONCAT('^(?:-*[^-]){', STR(((74 - ?templateMotifSequenceMatchBeginPositionP62623273) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1284) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP62623MF_00191274, 1, (STRLEN(?targetMotifMatchCigarP62623MF_00191274) - STRLEN(REPLACE(?targetMotifMatchCigarP62623MF_00191274, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1284), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP62623MF_00191274, 1, (STRLEN(?targetMotifMatchCigarP62623MF_00191274) - STRLEN(REPLACE(?targetMotifMatchCigarP62623MF_00191274, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1284), '}'), '')))), '[^-]', ''))) AS ?step2285) .
BIND(((?step2285 + ?targetMotifMatchRegionMatchBeginPositionMF_00191275) - 1) AS ?thisPositionOn63) .
BIND(?thisPositionOn63 AS ?thisPositionOn64) .
BIND(?this AS ?pfs2t286) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfsb60) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfse61) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn63, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00191a59')) AS ?annotation59) .
BIND(?this AS ?pfs58) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch291 faldo:location ?templateMotifSequenceMatchRegionP62623292 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP62623294 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP62623MF_00191287 .
?templateMotifSequenceMatchRegionP62623292 faldo:begin ?templateMotifSequenceMatchBeginP62623293 .
?templateMotifSequenceMatchBeginP62623293 faldo:position ?templateMotifSequenceMatchBeginPositionP62623288 ;
faldo:reference isoform:P62623-1 .
?templateMotifSequenceProfileAlignmentOperationP62623294 edam:has_input signature:MF_00191 ;
rdf:type edam:operation_0300 .
?targetMotifMatch295 faldo:location ?targetMotifMatchRegionMatch296 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00191298 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP62623MF_00191289 .
?targetMotifMatchRegionMatch296 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00191297 .
?targetMotifMatchRegionMatchBeginMF_00191297 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00191290 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00191298 edam:has_input signature:MF_00191 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP62623MF_00191287, 1, (STRLEN(?templateMotifCigarP62623MF_00191287) - STRLEN(REPLACE(?templateMotifCigarP62623MF_00191287, CONCAT('^(?:-*[^-]){', STR(((74 - ?templateMotifSequenceMatchBeginPositionP62623288) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1299) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP62623MF_00191289, 1, (STRLEN(?targetMotifMatchCigarP62623MF_00191289) - STRLEN(REPLACE(?targetMotifMatchCigarP62623MF_00191289, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1299), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP62623MF_00191289, 1, (STRLEN(?targetMotifMatchCigarP62623MF_00191289) - STRLEN(REPLACE(?targetMotifMatchCigarP62623MF_00191289, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1299), '}'), '')))), '[^-]', ''))) AS ?step2300) .
BIND(((?step2300 + ?targetMotifMatchRegionMatchBeginPositionMF_00191290) - 1) AS ?thisPositionOn70) .
BIND(?thisPositionOn70 AS ?thisPositionOn71) .
BIND(?this AS ?pfs2t301) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn70))) AS ?pfsb67) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn71))) AS ?pfse68) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn70, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00191a66')) AS ?annotation66) .
BIND(?this AS ?pfs65) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch306 faldo:location ?templateMotifSequenceMatchRegionP62623307 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP62623309 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP62623MF_00191302 .
?templateMotifSequenceMatchRegionP62623307 faldo:begin ?templateMotifSequenceMatchBeginP62623308 .
?templateMotifSequenceMatchBeginP62623308 faldo:position ?templateMotifSequenceMatchBeginPositionP62623303 ;
faldo:reference isoform:P62623-1 .
?templateMotifSequenceProfileAlignmentOperationP62623309 edam:has_input signature:MF_00191 ;
rdf:type edam:operation_0300 .
?targetMotifMatch310 faldo:location ?targetMotifMatchRegionMatch311 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00191313 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP62623MF_00191304 .
?targetMotifMatchRegionMatch311 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00191312 .
?targetMotifMatchRegionMatchBeginMF_00191312 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00191305 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00191313 edam:has_input signature:MF_00191 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP62623MF_00191302, 1, (STRLEN(?templateMotifCigarP62623MF_00191302) - STRLEN(REPLACE(?templateMotifCigarP62623MF_00191302, CONCAT('^(?:-*[^-]){', STR(((74 - ?templateMotifSequenceMatchBeginPositionP62623303) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1314) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP62623MF_00191304, 1, (STRLEN(?targetMotifMatchCigarP62623MF_00191304) - STRLEN(REPLACE(?targetMotifMatchCigarP62623MF_00191304, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1314), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP62623MF_00191304, 1, (STRLEN(?targetMotifMatchCigarP62623MF_00191304) - STRLEN(REPLACE(?targetMotifMatchCigarP62623MF_00191304, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1314), '}'), '')))), '[^-]', ''))) AS ?step2315) .
BIND(((?step2315 + ?targetMotifMatchRegionMatchBeginPositionMF_00191305) - 1) AS ?thisPositionOn77) .
BIND(?thisPositionOn77 AS ?thisPositionOn78) .
BIND(?this AS ?pfs2t316) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn77))) AS ?pfsb74) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn78))) AS ?pfse75) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn77, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00191a73')) AS ?annotation73) .
BIND(?this AS ?pfs72) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch321 faldo:location ?templateMotifSequenceMatchRegionP62623322 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP62623324 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP62623MF_00191317 .
?templateMotifSequenceMatchRegionP62623322 faldo:begin ?templateMotifSequenceMatchBeginP62623323 .
?templateMotifSequenceMatchBeginP62623323 faldo:position ?templateMotifSequenceMatchBeginPositionP62623318 ;
faldo:reference isoform:P62623-1 .
?templateMotifSequenceProfileAlignmentOperationP62623324 edam:has_input signature:MF_00191 ;
rdf:type edam:operation_0300 .
?targetMotifMatch325 faldo:location ?targetMotifMatchRegionMatch326 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00191328 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP62623MF_00191319 .
?targetMotifMatchRegionMatch326 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00191327 .
?targetMotifMatchRegionMatchBeginMF_00191327 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00191320 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00191328 edam:has_input signature:MF_00191 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP62623MF_00191317, 1, (STRLEN(?templateMotifCigarP62623MF_00191317) - STRLEN(REPLACE(?templateMotifCigarP62623MF_00191317, CONCAT('^(?:-*[^-]){', STR(((124 - ?templateMotifSequenceMatchBeginPositionP62623318) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1329) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP62623MF_00191319, 1, (STRLEN(?targetMotifMatchCigarP62623MF_00191319) - STRLEN(REPLACE(?targetMotifMatchCigarP62623MF_00191319, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1329), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP62623MF_00191319, 1, (STRLEN(?targetMotifMatchCigarP62623MF_00191319) - STRLEN(REPLACE(?targetMotifMatchCigarP62623MF_00191319, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1329), '}'), '')))), '[^-]', ''))) AS ?step2330) .
BIND(((?step2330 + ?targetMotifMatchRegionMatchBeginPositionMF_00191320) - 1) AS ?thisPositionOn84) .
BIND(?thisPositionOn84 AS ?thisPositionOn85) .
BIND(?this AS ?pfs2t331) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn84))) AS ?pfsb81) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn85))) AS ?pfse82) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn84, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00191a80')) AS ?annotation80) .
BIND(?this AS ?pfs79) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch336 faldo:location ?templateMotifSequenceMatchRegionP62623337 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP62623339 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP62623MF_00191332 .
?templateMotifSequenceMatchRegionP62623337 faldo:begin ?templateMotifSequenceMatchBeginP62623338 .
?templateMotifSequenceMatchBeginP62623338 faldo:position ?templateMotifSequenceMatchBeginPositionP62623333 ;
faldo:reference isoform:P62623-1 .
?templateMotifSequenceProfileAlignmentOperationP62623339 edam:has_input signature:MF_00191 ;
rdf:type edam:operation_0300 .
?targetMotifMatch340 faldo:location ?targetMotifMatchRegionMatch341 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00191343 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP62623MF_00191334 .
?targetMotifMatchRegionMatch341 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00191342 .
?targetMotifMatchRegionMatchBeginMF_00191342 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00191335 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00191343 edam:has_input signature:MF_00191 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP62623MF_00191332, 1, (STRLEN(?templateMotifCigarP62623MF_00191332) - STRLEN(REPLACE(?templateMotifCigarP62623MF_00191332, CONCAT('^(?:-*[^-]){', STR(((124 - ?templateMotifSequenceMatchBeginPositionP62623333) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1344) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP62623MF_00191334, 1, (STRLEN(?targetMotifMatchCigarP62623MF_00191334) - STRLEN(REPLACE(?targetMotifMatchCigarP62623MF_00191334, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1344), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP62623MF_00191334, 1, (STRLEN(?targetMotifMatchCigarP62623MF_00191334) - STRLEN(REPLACE(?targetMotifMatchCigarP62623MF_00191334, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1344), '}'), '')))), '[^-]', ''))) AS ?step2345) .
BIND(((?step2345 + ?targetMotifMatchRegionMatchBeginPositionMF_00191335) - 1) AS ?thisPositionOn91) .
BIND(?thisPositionOn91 AS ?thisPositionOn92) .
BIND(?this AS ?pfs2t346) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn91))) AS ?pfsb88) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn92))) AS ?pfse89) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn91, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00191a87')) AS ?annotation87) .
BIND(?this AS ?pfs86) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch351 faldo:location ?templateMotifSequenceMatchRegionP62623352 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP62623354 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP62623MF_00191347 .
?templateMotifSequenceMatchRegionP62623352 faldo:begin ?templateMotifSequenceMatchBeginP62623353 .
?templateMotifSequenceMatchBeginP62623353 faldo:position ?templateMotifSequenceMatchBeginPositionP62623348 ;
faldo:reference isoform:P62623-1 .
?templateMotifSequenceProfileAlignmentOperationP62623354 edam:has_input signature:MF_00191 ;
rdf:type edam:operation_0300 .
?targetMotifMatch355 faldo:location ?targetMotifMatchRegionMatch356 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00191358 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP62623MF_00191349 .
?targetMotifMatchRegionMatch356 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00191357 .
?targetMotifMatchRegionMatchBeginMF_00191357 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00191350 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00191358 edam:has_input signature:MF_00191 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP62623MF_00191347, 1, (STRLEN(?templateMotifCigarP62623MF_00191347) - STRLEN(REPLACE(?templateMotifCigarP62623MF_00191347, CONCAT('^(?:-*[^-]){', STR(((124 - ?templateMotifSequenceMatchBeginPositionP62623348) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1359) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP62623MF_00191349, 1, (STRLEN(?targetMotifMatchCigarP62623MF_00191349) - STRLEN(REPLACE(?targetMotifMatchCigarP62623MF_00191349, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1359), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP62623MF_00191349, 1, (STRLEN(?targetMotifMatchCigarP62623MF_00191349) - STRLEN(REPLACE(?targetMotifMatchCigarP62623MF_00191349, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1359), '}'), '')))), '[^-]', ''))) AS ?step2360) .
BIND(((?step2360 + ?targetMotifMatchRegionMatchBeginPositionMF_00191350) - 1) AS ?thisPositionOn98) .
BIND(?thisPositionOn98 AS ?thisPositionOn99) .
BIND(?this AS ?pfs2t361) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn98))) AS ?pfsb95) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn99))) AS ?pfse96) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn98, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00191a94')) AS ?annotation94) .
BIND(?this AS ?pfs93) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch366 faldo:location ?templateMotifSequenceMatchRegionP62623367 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP62623369 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP62623MF_00191362 .
?templateMotifSequenceMatchRegionP62623367 faldo:begin ?templateMotifSequenceMatchBeginP62623368 .
?templateMotifSequenceMatchBeginP62623368 faldo:position ?templateMotifSequenceMatchBeginPositionP62623363 ;
faldo:reference isoform:P62623-1 .
?templateMotifSequenceProfileAlignmentOperationP62623369 edam:has_input signature:MF_00191 ;
rdf:type edam:operation_0300 .
?targetMotifMatch370 faldo:location ?targetMotifMatchRegionMatch371 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00191373 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP62623MF_00191364 .
?targetMotifMatchRegionMatch371 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00191372 .
?targetMotifMatchRegionMatchBeginMF_00191372 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00191365 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00191373 edam:has_input signature:MF_00191 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP62623MF_00191362, 1, (STRLEN(?templateMotifCigarP62623MF_00191362) - STRLEN(REPLACE(?templateMotifCigarP62623MF_00191362, CONCAT('^(?:-*[^-]){', STR(((167 - ?templateMotifSequenceMatchBeginPositionP62623363) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1374) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP62623MF_00191364, 1, (STRLEN(?targetMotifMatchCigarP62623MF_00191364) - STRLEN(REPLACE(?targetMotifMatchCigarP62623MF_00191364, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1374), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP62623MF_00191364, 1, (STRLEN(?targetMotifMatchCigarP62623MF_00191364) - STRLEN(REPLACE(?targetMotifMatchCigarP62623MF_00191364, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1374), '}'), '')))), '[^-]', ''))) AS ?step2375) .
BIND(((?step2375 + ?targetMotifMatchRegionMatchBeginPositionMF_00191365) - 1) AS ?thisPositionOn105) .
BIND(?thisPositionOn105 AS ?thisPositionOn106) .
BIND(?this AS ?pfs2t376) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn105))) AS ?pfsb102) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn106))) AS ?pfse103) .
FILTER (REGEX('[TS]', SUBSTR(?thisSequenceValue, ?thisPositionOn105, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00191a101')) AS ?annotation101) .
BIND(?this AS ?pfs100) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch381 faldo:location ?templateMotifSequenceMatchRegionP62623382 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP62623384 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP62623MF_00191377 .
?templateMotifSequenceMatchRegionP62623382 faldo:begin ?templateMotifSequenceMatchBeginP62623383 .
?templateMotifSequenceMatchBeginP62623383 faldo:position ?templateMotifSequenceMatchBeginPositionP62623378 ;
faldo:reference isoform:P62623-1 .
?templateMotifSequenceProfileAlignmentOperationP62623384 edam:has_input signature:MF_00191 ;
rdf:type edam:operation_0300 .
?targetMotifMatch385 faldo:location ?targetMotifMatchRegionMatch386 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00191388 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP62623MF_00191379 .
?targetMotifMatchRegionMatch386 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00191387 .
?targetMotifMatchRegionMatchBeginMF_00191387 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00191380 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00191388 edam:has_input signature:MF_00191 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP62623MF_00191377, 1, (STRLEN(?templateMotifCigarP62623MF_00191377) - STRLEN(REPLACE(?templateMotifCigarP62623MF_00191377, CONCAT('^(?:-*[^-]){', STR(((225 - ?templateMotifSequenceMatchBeginPositionP62623378) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1389) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP62623MF_00191379, 1, (STRLEN(?targetMotifMatchCigarP62623MF_00191379) - STRLEN(REPLACE(?targetMotifMatchCigarP62623MF_00191379, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1389), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP62623MF_00191379, 1, (STRLEN(?targetMotifMatchCigarP62623MF_00191379) - STRLEN(REPLACE(?targetMotifMatchCigarP62623MF_00191379, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1389), '}'), '')))), '[^-]', ''))) AS ?step2390) .
BIND(((?step2390 + ?targetMotifMatchRegionMatchBeginPositionMF_00191380) - 1) AS ?thisPositionOn112) .
BIND(?thisPositionOn112 AS ?thisPositionOn113) .
BIND(?this AS ?pfs2t391) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn112))) AS ?pfsb109) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn113))) AS ?pfse110) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn112, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_00191a108')) AS ?annotation108) .
BIND(?this AS ?pfs107) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch396 faldo:location ?templateMotifSequenceMatchRegionP62623397 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP62623399 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP62623MF_00191392 .
?templateMotifSequenceMatchRegionP62623397 faldo:begin ?templateMotifSequenceMatchBeginP62623398 .
?templateMotifSequenceMatchBeginP62623398 faldo:position ?templateMotifSequenceMatchBeginPositionP62623393 ;
faldo:reference isoform:P62623-1 .
?templateMotifSequenceProfileAlignmentOperationP62623399 edam:has_input signature:MF_00191 ;
rdf:type edam:operation_0300 .
?targetMotifMatch400 faldo:location ?targetMotifMatchRegionMatch401 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00191403 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP62623MF_00191394 .
?targetMotifMatchRegionMatch401 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00191402 .
?targetMotifMatchRegionMatchBeginMF_00191402 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00191395 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00191403 edam:has_input signature:MF_00191 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP62623MF_00191392, 1, (STRLEN(?templateMotifCigarP62623MF_00191392) - STRLEN(REPLACE(?templateMotifCigarP62623MF_00191392, CONCAT('^(?:-*[^-]){', STR(((225 - ?templateMotifSequenceMatchBeginPositionP62623393) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1404) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP62623MF_00191394, 1, (STRLEN(?targetMotifMatchCigarP62623MF_00191394) - STRLEN(REPLACE(?targetMotifMatchCigarP62623MF_00191394, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1404), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP62623MF_00191394, 1, (STRLEN(?targetMotifMatchCigarP62623MF_00191394) - STRLEN(REPLACE(?targetMotifMatchCigarP62623MF_00191394, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1404), '}'), '')))), '[^-]', ''))) AS ?step2405) .
BIND(((?step2405 + ?targetMotifMatchRegionMatchBeginPositionMF_00191395) - 1) AS ?thisPositionOn119) .
BIND(?thisPositionOn119 AS ?thisPositionOn120) .
BIND(?this AS ?pfs2t406) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn119))) AS ?pfsb116) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn120))) AS ?pfse117) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn119, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_00191a115')) AS ?annotation115) .
BIND(?this AS ?pfs114) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch411 faldo:location ?templateMotifSequenceMatchRegionP62623412 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP62623414 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP62623MF_00191407 .
?templateMotifSequenceMatchRegionP62623412 faldo:begin ?templateMotifSequenceMatchBeginP62623413 .
?templateMotifSequenceMatchBeginP62623413 faldo:position ?templateMotifSequenceMatchBeginPositionP62623408 ;
faldo:reference isoform:P62623-1 .
?templateMotifSequenceProfileAlignmentOperationP62623414 edam:has_input signature:MF_00191 ;
rdf:type edam:operation_0300 .
?targetMotifMatch415 faldo:location ?targetMotifMatchRegionMatch416 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00191418 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP62623MF_00191409 .
?targetMotifMatchRegionMatch416 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00191417 .
?targetMotifMatchRegionMatchBeginMF_00191417 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00191410 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00191418 edam:has_input signature:MF_00191 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP62623MF_00191407, 1, (STRLEN(?templateMotifCigarP62623MF_00191407) - STRLEN(REPLACE(?templateMotifCigarP62623MF_00191407, CONCAT('^(?:-*[^-]){', STR(((225 - ?templateMotifSequenceMatchBeginPositionP62623408) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1419) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP62623MF_00191409, 1, (STRLEN(?targetMotifMatchCigarP62623MF_00191409) - STRLEN(REPLACE(?targetMotifMatchCigarP62623MF_00191409, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1419), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP62623MF_00191409, 1, (STRLEN(?targetMotifMatchCigarP62623MF_00191409) - STRLEN(REPLACE(?targetMotifMatchCigarP62623MF_00191409, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1419), '}'), '')))), '[^-]', ''))) AS ?step2420) .
BIND(((?step2420 + ?targetMotifMatchRegionMatchBeginPositionMF_00191410) - 1) AS ?thisPositionOn126) .
BIND(?thisPositionOn126 AS ?thisPositionOn127) .
BIND(?this AS ?pfs2t421) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn126))) AS ?pfsb123) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn127))) AS ?pfse124) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn126, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_00191a122')) AS ?annotation122) .
BIND(?this AS ?pfs121) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch426 faldo:location ?templateMotifSequenceMatchRegionP62623427 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP62623429 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP62623MF_00191422 .
?templateMotifSequenceMatchRegionP62623427 faldo:begin ?templateMotifSequenceMatchBeginP62623428 .
?templateMotifSequenceMatchBeginP62623428 faldo:position ?templateMotifSequenceMatchBeginPositionP62623423 ;
faldo:reference isoform:P62623-1 .
?templateMotifSequenceProfileAlignmentOperationP62623429 edam:has_input signature:MF_00191 ;
rdf:type edam:operation_0300 .
?targetMotifMatch430 faldo:location ?targetMotifMatchRegionMatch431 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00191433 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP62623MF_00191424 .
?targetMotifMatchRegionMatch431 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00191432 .
?targetMotifMatchRegionMatchBeginMF_00191432 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00191425 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00191433 edam:has_input signature:MF_00191 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP62623MF_00191422, 1, (STRLEN(?templateMotifCigarP62623MF_00191422) - STRLEN(REPLACE(?templateMotifCigarP62623MF_00191422, CONCAT('^(?:-*[^-]){', STR(((226 - ?templateMotifSequenceMatchBeginPositionP62623423) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1434) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP62623MF_00191424, 1, (STRLEN(?targetMotifMatchCigarP62623MF_00191424) - STRLEN(REPLACE(?targetMotifMatchCigarP62623MF_00191424, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1434), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP62623MF_00191424, 1, (STRLEN(?targetMotifMatchCigarP62623MF_00191424) - STRLEN(REPLACE(?targetMotifMatchCigarP62623MF_00191424, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1434), '}'), '')))), '[^-]', ''))) AS ?step2435) .
BIND(((?step2435 + ?targetMotifMatchRegionMatchBeginPositionMF_00191425) - 1) AS ?thisPositionOn133) .
BIND(?thisPositionOn133 AS ?thisPositionOn134) .
BIND(?this AS ?pfs2t436) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn133))) AS ?pfsb130) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn134))) AS ?pfse131) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn133, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_00191a129')) AS ?annotation129) .
BIND(?this AS ?pfs128) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch441 faldo:location ?templateMotifSequenceMatchRegionP62623442 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP62623444 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP62623MF_00191437 .
?templateMotifSequenceMatchRegionP62623442 faldo:begin ?templateMotifSequenceMatchBeginP62623443 .
?templateMotifSequenceMatchBeginP62623443 faldo:position ?templateMotifSequenceMatchBeginPositionP62623438 ;
faldo:reference isoform:P62623-1 .
?templateMotifSequenceProfileAlignmentOperationP62623444 edam:has_input signature:MF_00191 ;
rdf:type edam:operation_0300 .
?targetMotifMatch445 faldo:location ?targetMotifMatchRegionMatch446 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00191448 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP62623MF_00191439 .
?targetMotifMatchRegionMatch446 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00191447 .
?targetMotifMatchRegionMatchBeginMF_00191447 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00191440 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00191448 edam:has_input signature:MF_00191 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP62623MF_00191437, 1, (STRLEN(?templateMotifCigarP62623MF_00191437) - STRLEN(REPLACE(?templateMotifCigarP62623MF_00191437, CONCAT('^(?:-*[^-]){', STR(((226 - ?templateMotifSequenceMatchBeginPositionP62623438) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1449) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP62623MF_00191439, 1, (STRLEN(?targetMotifMatchCigarP62623MF_00191439) - STRLEN(REPLACE(?targetMotifMatchCigarP62623MF_00191439, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1449), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP62623MF_00191439, 1, (STRLEN(?targetMotifMatchCigarP62623MF_00191439) - STRLEN(REPLACE(?targetMotifMatchCigarP62623MF_00191439, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1449), '}'), '')))), '[^-]', ''))) AS ?step2450) .
BIND(((?step2450 + ?targetMotifMatchRegionMatchBeginPositionMF_00191440) - 1) AS ?thisPositionOn140) .
BIND(?thisPositionOn140 AS ?thisPositionOn141) .
BIND(?this AS ?pfs2t451) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn140))) AS ?pfsb137) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn141))) AS ?pfse138) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn140, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_00191a136')) AS ?annotation136) .
BIND(?this AS ?pfs135) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch456 faldo:location ?templateMotifSequenceMatchRegionP62623457 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP62623459 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP62623MF_00191452 .
?templateMotifSequenceMatchRegionP62623457 faldo:begin ?templateMotifSequenceMatchBeginP62623458 .
?templateMotifSequenceMatchBeginP62623458 faldo:position ?templateMotifSequenceMatchBeginPositionP62623453 ;
faldo:reference isoform:P62623-1 .
?templateMotifSequenceProfileAlignmentOperationP62623459 edam:has_input signature:MF_00191 ;
rdf:type edam:operation_0300 .
?targetMotifMatch460 faldo:location ?targetMotifMatchRegionMatch461 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00191463 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP62623MF_00191454 .
?targetMotifMatchRegionMatch461 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00191462 .
?targetMotifMatchRegionMatchBeginMF_00191462 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00191455 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00191463 edam:has_input signature:MF_00191 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP62623MF_00191452, 1, (STRLEN(?templateMotifCigarP62623MF_00191452) - STRLEN(REPLACE(?templateMotifCigarP62623MF_00191452, CONCAT('^(?:-*[^-]){', STR(((226 - ?templateMotifSequenceMatchBeginPositionP62623453) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1464) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP62623MF_00191454, 1, (STRLEN(?targetMotifMatchCigarP62623MF_00191454) - STRLEN(REPLACE(?targetMotifMatchCigarP62623MF_00191454, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1464), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP62623MF_00191454, 1, (STRLEN(?targetMotifMatchCigarP62623MF_00191454) - STRLEN(REPLACE(?targetMotifMatchCigarP62623MF_00191454, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1464), '}'), '')))), '[^-]', ''))) AS ?step2465) .
BIND(((?step2465 + ?targetMotifMatchRegionMatchBeginPositionMF_00191455) - 1) AS ?thisPositionOn147) .
BIND(?thisPositionOn147 AS ?thisPositionOn148) .
BIND(?this AS ?pfs2t466) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn147))) AS ?pfsb144) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn148))) AS ?pfse145) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn147, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_00191a143')) AS ?annotation143) .
BIND(?this AS ?pfs142) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch471 faldo:location ?templateMotifSequenceMatchRegionP62623472 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP62623474 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP62623MF_00191467 .
?templateMotifSequenceMatchRegionP62623472 faldo:begin ?templateMotifSequenceMatchBeginP62623473 .
?templateMotifSequenceMatchBeginP62623473 faldo:position ?templateMotifSequenceMatchBeginPositionP62623468 ;
faldo:reference isoform:P62623-1 .
?templateMotifSequenceProfileAlignmentOperationP62623474 edam:has_input signature:MF_00191 ;
rdf:type edam:operation_0300 .
?targetMotifMatch475 faldo:location ?targetMotifMatchRegionMatch476 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00191478 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP62623MF_00191469 .
?targetMotifMatchRegionMatch476 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00191477 .
?targetMotifMatchRegionMatchBeginMF_00191477 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00191470 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00191478 edam:has_input signature:MF_00191 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP62623MF_00191467, 1, (STRLEN(?templateMotifCigarP62623MF_00191467) - STRLEN(REPLACE(?templateMotifCigarP62623MF_00191467, CONCAT('^(?:-*[^-]){', STR(((227 - ?templateMotifSequenceMatchBeginPositionP62623468) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1479) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP62623MF_00191469, 1, (STRLEN(?targetMotifMatchCigarP62623MF_00191469) - STRLEN(REPLACE(?targetMotifMatchCigarP62623MF_00191469, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1479), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP62623MF_00191469, 1, (STRLEN(?targetMotifMatchCigarP62623MF_00191469) - STRLEN(REPLACE(?targetMotifMatchCigarP62623MF_00191469, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1479), '}'), '')))), '[^-]', ''))) AS ?step2480) .
BIND(((?step2480 + ?targetMotifMatchRegionMatchBeginPositionMF_00191470) - 1) AS ?thisPositionOn154) .
BIND(?thisPositionOn154 AS ?thisPositionOn155) .
BIND(?this AS ?pfs2t481) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn154))) AS ?pfsb151) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn155))) AS ?pfse152) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn154, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_00191a150')) AS ?annotation150) .
BIND(?this AS ?pfs149) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch486 faldo:location ?templateMotifSequenceMatchRegionP62623487 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP62623489 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP62623MF_00191482 .
?templateMotifSequenceMatchRegionP62623487 faldo:begin ?templateMotifSequenceMatchBeginP62623488 .
?templateMotifSequenceMatchBeginP62623488 faldo:position ?templateMotifSequenceMatchBeginPositionP62623483 ;
faldo:reference isoform:P62623-1 .
?templateMotifSequenceProfileAlignmentOperationP62623489 edam:has_input signature:MF_00191 ;
rdf:type edam:operation_0300 .
?targetMotifMatch490 faldo:location ?targetMotifMatchRegionMatch491 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00191493 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP62623MF_00191484 .
?targetMotifMatchRegionMatch491 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00191492 .
?targetMotifMatchRegionMatchBeginMF_00191492 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00191485 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00191493 edam:has_input signature:MF_00191 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP62623MF_00191482, 1, (STRLEN(?templateMotifCigarP62623MF_00191482) - STRLEN(REPLACE(?templateMotifCigarP62623MF_00191482, CONCAT('^(?:-*[^-]){', STR(((227 - ?templateMotifSequenceMatchBeginPositionP62623483) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1494) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP62623MF_00191484, 1, (STRLEN(?targetMotifMatchCigarP62623MF_00191484) - STRLEN(REPLACE(?targetMotifMatchCigarP62623MF_00191484, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1494), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP62623MF_00191484, 1, (STRLEN(?targetMotifMatchCigarP62623MF_00191484) - STRLEN(REPLACE(?targetMotifMatchCigarP62623MF_00191484, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1494), '}'), '')))), '[^-]', ''))) AS ?step2495) .
BIND(((?step2495 + ?targetMotifMatchRegionMatchBeginPositionMF_00191485) - 1) AS ?thisPositionOn161) .
BIND(?thisPositionOn161 AS ?thisPositionOn162) .
BIND(?this AS ?pfs2t496) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn161))) AS ?pfsb158) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn162))) AS ?pfse159) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn161, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_00191a157')) AS ?annotation157) .
BIND(?this AS ?pfs156) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch501 faldo:location ?templateMotifSequenceMatchRegionP62623502 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP62623504 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP62623MF_00191497 .
?templateMotifSequenceMatchRegionP62623502 faldo:begin ?templateMotifSequenceMatchBeginP62623503 .
?templateMotifSequenceMatchBeginP62623503 faldo:position ?templateMotifSequenceMatchBeginPositionP62623498 ;
faldo:reference isoform:P62623-1 .
?templateMotifSequenceProfileAlignmentOperationP62623504 edam:has_input signature:MF_00191 ;
rdf:type edam:operation_0300 .
?targetMotifMatch505 faldo:location ?targetMotifMatchRegionMatch506 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00191508 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP62623MF_00191499 .
?targetMotifMatchRegionMatch506 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00191507 .
?targetMotifMatchRegionMatchBeginMF_00191507 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00191500 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00191508 edam:has_input signature:MF_00191 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP62623MF_00191497, 1, (STRLEN(?templateMotifCigarP62623MF_00191497) - STRLEN(REPLACE(?templateMotifCigarP62623MF_00191497, CONCAT('^(?:-*[^-]){', STR(((227 - ?templateMotifSequenceMatchBeginPositionP62623498) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1509) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP62623MF_00191499, 1, (STRLEN(?targetMotifMatchCigarP62623MF_00191499) - STRLEN(REPLACE(?targetMotifMatchCigarP62623MF_00191499, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1509), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP62623MF_00191499, 1, (STRLEN(?targetMotifMatchCigarP62623MF_00191499) - STRLEN(REPLACE(?targetMotifMatchCigarP62623MF_00191499, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1509), '}'), '')))), '[^-]', ''))) AS ?step2510) .
BIND(((?step2510 + ?targetMotifMatchRegionMatchBeginPositionMF_00191500) - 1) AS ?thisPositionOn168) .
BIND(?thisPositionOn168 AS ?thisPositionOn169) .
BIND(?this AS ?pfs2t511) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn168))) AS ?pfsb165) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn169))) AS ?pfse166) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn168, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_00191a164')) AS ?annotation164) .
BIND(?this AS ?pfs163) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch516 faldo:location ?templateMotifSequenceMatchRegionP62623517 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP62623519 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP62623MF_00191512 .
?templateMotifSequenceMatchRegionP62623517 faldo:begin ?templateMotifSequenceMatchBeginP62623518 .
?templateMotifSequenceMatchBeginP62623518 faldo:position ?templateMotifSequenceMatchBeginPositionP62623513 ;
faldo:reference isoform:P62623-1 .
?templateMotifSequenceProfileAlignmentOperationP62623519 edam:has_input signature:MF_00191 ;
rdf:type edam:operation_0300 .
?targetMotifMatch520 faldo:location ?targetMotifMatchRegionMatch521 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00191523 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP62623MF_00191514 .
?targetMotifMatchRegionMatch521 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00191522 .
?targetMotifMatchRegionMatchBeginMF_00191522 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00191515 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00191523 edam:has_input signature:MF_00191 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP62623MF_00191512, 1, (STRLEN(?templateMotifCigarP62623MF_00191512) - STRLEN(REPLACE(?templateMotifCigarP62623MF_00191512, CONCAT('^(?:-*[^-]){', STR(((269 - ?templateMotifSequenceMatchBeginPositionP62623513) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1524) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP62623MF_00191514, 1, (STRLEN(?targetMotifMatchCigarP62623MF_00191514) - STRLEN(REPLACE(?targetMotifMatchCigarP62623MF_00191514, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1524), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP62623MF_00191514, 1, (STRLEN(?targetMotifMatchCigarP62623MF_00191514) - STRLEN(REPLACE(?targetMotifMatchCigarP62623MF_00191514, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1524), '}'), '')))), '[^-]', ''))) AS ?step2525) .
BIND(((?step2525 + ?targetMotifMatchRegionMatchBeginPositionMF_00191515) - 1) AS ?thisPositionOn175) .
BIND(?thisPositionOn175 AS ?thisPositionOn176) .
BIND(?this AS ?pfs2t526) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn175))) AS ?pfsb172) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn176))) AS ?pfse173) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn175, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_00191a171')) AS ?annotation171) .
BIND(?this AS ?pfs170) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch531 faldo:location ?templateMotifSequenceMatchRegionP62623532 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP62623534 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP62623MF_00191527 .
?templateMotifSequenceMatchRegionP62623532 faldo:begin ?templateMotifSequenceMatchBeginP62623533 .
?templateMotifSequenceMatchBeginP62623533 faldo:position ?templateMotifSequenceMatchBeginPositionP62623528 ;
faldo:reference isoform:P62623-1 .
?templateMotifSequenceProfileAlignmentOperationP62623534 edam:has_input signature:MF_00191 ;
rdf:type edam:operation_0300 .
?targetMotifMatch535 faldo:location ?targetMotifMatchRegionMatch536 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00191538 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP62623MF_00191529 .
?targetMotifMatchRegionMatch536 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00191537 .
?targetMotifMatchRegionMatchBeginMF_00191537 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00191530 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00191538 edam:has_input signature:MF_00191 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP62623MF_00191527, 1, (STRLEN(?templateMotifCigarP62623MF_00191527) - STRLEN(REPLACE(?templateMotifCigarP62623MF_00191527, CONCAT('^(?:-*[^-]){', STR(((269 - ?templateMotifSequenceMatchBeginPositionP62623528) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1539) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP62623MF_00191529, 1, (STRLEN(?targetMotifMatchCigarP62623MF_00191529) - STRLEN(REPLACE(?targetMotifMatchCigarP62623MF_00191529, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1539), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP62623MF_00191529, 1, (STRLEN(?targetMotifMatchCigarP62623MF_00191529) - STRLEN(REPLACE(?targetMotifMatchCigarP62623MF_00191529, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1539), '}'), '')))), '[^-]', ''))) AS ?step2540) .
BIND(((?step2540 + ?targetMotifMatchRegionMatchBeginPositionMF_00191530) - 1) AS ?thisPositionOn182) .
BIND(?thisPositionOn182 AS ?thisPositionOn183) .
BIND(?this AS ?pfs2t541) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn182))) AS ?pfsb179) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn183))) AS ?pfse180) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn182, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_00191a178')) AS ?annotation178) .
BIND(?this AS ?pfs177) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch546 faldo:location ?templateMotifSequenceMatchRegionP62623547 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP62623549 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP62623MF_00191542 .
?templateMotifSequenceMatchRegionP62623547 faldo:begin ?templateMotifSequenceMatchBeginP62623548 .
?templateMotifSequenceMatchBeginP62623548 faldo:position ?templateMotifSequenceMatchBeginPositionP62623543 ;
faldo:reference isoform:P62623-1 .
?templateMotifSequenceProfileAlignmentOperationP62623549 edam:has_input signature:MF_00191 ;
rdf:type edam:operation_0300 .
?targetMotifMatch550 faldo:location ?targetMotifMatchRegionMatch551 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00191553 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP62623MF_00191544 .
?targetMotifMatchRegionMatch551 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00191552 .
?targetMotifMatchRegionMatchBeginMF_00191552 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00191545 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00191553 edam:has_input signature:MF_00191 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP62623MF_00191542, 1, (STRLEN(?templateMotifCigarP62623MF_00191542) - STRLEN(REPLACE(?templateMotifCigarP62623MF_00191542, CONCAT('^(?:-*[^-]){', STR(((269 - ?templateMotifSequenceMatchBeginPositionP62623543) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1554) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP62623MF_00191544, 1, (STRLEN(?targetMotifMatchCigarP62623MF_00191544) - STRLEN(REPLACE(?targetMotifMatchCigarP62623MF_00191544, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1554), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP62623MF_00191544, 1, (STRLEN(?targetMotifMatchCigarP62623MF_00191544) - STRLEN(REPLACE(?targetMotifMatchCigarP62623MF_00191544, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1554), '}'), '')))), '[^-]', ''))) AS ?step2555) .
BIND(((?step2555 + ?targetMotifMatchRegionMatchBeginPositionMF_00191545) - 1) AS ?thisPositionOn189) .
BIND(?thisPositionOn189 AS ?thisPositionOn190) .
BIND(?this AS ?pfs2t556) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn189))) AS ?pfsb186) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn190))) AS ?pfse187) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn189, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_00191a185')) AS ?annotation185) .
BIND(?this AS ?pfs184) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag557) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag557, ?UNBOUND_VARIABLE) AS ?case10) .
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(?this AS ?case11) .
}
}
"xsd:string |
