| http://purl.uniprot.org/unirules/MF_00220#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:92903 up:source unirule:MF_00220 .
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_:92942 up:source unirule:MF_00220 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation6 ,
?annotation7 ;
up:classifiedWith GO:0004151 ,
GO:0008270 ,
GO:0044205 ,
keyword:378 ,
keyword:479 ,
keyword:665 ,
keyword:862 ;
up:recommendedName ?name0 .
?name0 up:ecName '3.5.2.3' ;
up:fullName 'Dihydroorotase' ;
up:shortName 'DHOase' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'pyrC' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate.' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 up:cofactor chebi:29105 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 2 Zn(2+) ions per subunit.' .
?annotation6 a up:Pathway_Annotation ;
rdfs:comment 'Pyrimidine metabolism; UMP biosynthesis via de novo pathway; (S)-dihydroorotate from bicarbonate: step 3/3.' .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily.' .
?pfs8 up:annotation ?annotation9 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
up:ligand ?ligand12 ;
rdf:type up:Binding_Site_Annotation .
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rdf:type faldo:ExactPosition .
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rdf:type faldo:ExactPosition .
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?molecule13 rdfs:label 'substrate' .
?pfs16 up:annotation ?annotation17 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
up:ligand ?ligand20 ;
rdf:type up:Binding_Site_Annotation .
?pfsb18 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
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?molecule21 rdfs:label 'substrate' .
?pfs24 up:annotation ?annotation25 .
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faldo:end ?pfse27 ;
rdf:type up:Active_Site_Annotation .
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rdf:type faldo:ExactPosition .
?pfse27 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?pfs30 up:annotation ?annotation31 .
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faldo:end ?pfse33 ;
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rdf:type up:Binding_Site_Annotation .
?pfsb32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
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rdf:type faldo:ExactPosition .
?ligand34 rdfs:subClassOf chebi:29105 .
?pfs37 up:annotation ?annotation38 .
?annotation38 faldo:begin ?pfsb39 ;
faldo:end ?pfse40 ;
up:ligand ?ligand41 ;
rdf:type up:Binding_Site_Annotation .
?pfsb39 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?pfse40 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?ligand41 rdfs:subClassOf chebi:29105 .
?pfs44 up:annotation ?annotation45 .
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faldo:end ?pfse47 ;
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rdf:type up:Binding_Site_Annotation .
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rdf:type faldo:ExactPosition .
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rdf:type faldo:ExactPosition .
?ligand48 rdfs:subClassOf chebi:29105 .
?pfs51 up:annotation ?annotation52 .
?annotation52 faldo:begin ?pfsb53 ;
faldo:end ?pfse54 ;
up:ligand ?ligand55 ;
rdf:type up:Binding_Site_Annotation .
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rdf:type faldo:ExactPosition .
?pfse54 faldo:position ?thisPositionOn57 ;
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?ligand55 rdfs:subClassOf chebi:29105 .
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faldo:end ?pfse61 ;
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rdf:type up:Binding_Site_Annotation .
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rdf:type faldo:ExactPosition .
?pfse61 faldo:position ?thisPositionOn64 ;
rdf:type faldo:ExactPosition .
?ligand62 rdfs:subClassOf chebi:29105 .
?pfs65 up:annotation ?annotation66 .
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faldo:end ?pfse68 ;
up:ligand ?ligand69 ;
rdf:type up:Binding_Site_Annotation .
?pfsb67 faldo:position ?thisPositionOn70 ;
rdf:type faldo:ExactPosition .
?pfse68 faldo:position ?thisPositionOn71 ;
rdf:type faldo:ExactPosition .
?ligand69 rdfs:subClassOf chebi:29105 .
?pfs72 up:annotation ?annotation73 .
?annotation73 faldo:begin ?pfsb74 ;
faldo:end ?pfse75 ;
up:ligand ?ligand76 ;
rdf:type up:Binding_Site_Annotation .
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rdf:type faldo:ExactPosition .
?pfse75 faldo:position ?thisPositionOn78 ;
rdf:type faldo:ExactPosition .
?ligand76 rdfs:subClassOf chebi:29105 .
?pfs79 up:annotation ?annotation80 .
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faldo:end ?pfse82 ;
up:ligand ?ligand83 ;
rdf:type up:Binding_Site_Annotation .
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rdf:type faldo:ExactPosition .
?pfse82 faldo:position ?thisPositionOn86 ;
rdf:type faldo:ExactPosition .
?ligand83 rdfs:subClassOf ?molecule84 .
?molecule84 rdfs:label 'substrate' .
?pfs87 up:annotation ?annotation88 .
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faldo:end ?pfse90 ;
up:ligand ?ligand91 ;
rdf:type up:Binding_Site_Annotation .
?pfsb89 faldo:position ?thisPositionOn93 ;
rdf:type faldo:ExactPosition .
?pfse90 faldo:position ?thisPositionOn94 ;
rdf:type faldo:ExactPosition .
?ligand91 rdfs:subClassOf ?molecule92 .
?molecule92 rdfs:label 'substrate' .
?pfs95 up:annotation ?annotation96 .
?annotation96 faldo:begin ?pfsb97 ;
faldo:end ?pfse98 ;
up:ligand ?ligand99 ;
rdf:type up:Binding_Site_Annotation .
?pfsb97 faldo:position ?thisPositionOn101 ;
rdf:type faldo:ExactPosition .
?pfse98 faldo:position ?thisPositionOn102 ;
rdf:type faldo:ExactPosition .
?ligand99 rdfs:subClassOf ?molecule100 .
?molecule100 rdfs:label 'substrate' .
?pfs103 up:annotation ?annotation104 .
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faldo:end ?pfse106 ;
up:ligand ?ligand107 ;
rdf:type up:Binding_Site_Annotation .
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rdf:type faldo:ExactPosition .
?pfse106 faldo:position ?thisPositionOn110 ;
rdf:type faldo:ExactPosition .
?ligand107 rdfs:subClassOf ?molecule108 .
?molecule108 rdfs:label 'substrate' .
?pfs111 up:annotation ?annotation112 .
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up:ligand ?ligand115 ;
rdf:type up:Binding_Site_Annotation .
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rdf:type faldo:ExactPosition .
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rdf:type faldo:ExactPosition .
?ligand115 rdfs:subClassOf ?molecule116 .
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?pfs119 up:annotation ?annotation120 .
?annotation120 faldo:begin ?pfsb121 ;
faldo:end ?pfse122 ;
rdf:type up:Active_Site_Annotation .
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rdf:type faldo:ExactPosition .
?pfse122 faldo:position ?thisPositionOn124 ;
rdf:type faldo:ExactPosition .
?pfs125 up:annotation ?annotation126 .
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faldo:end ?pfse128 ;
up:ligand ?ligand129 ;
rdf:type up:Binding_Site_Annotation .
?pfsb127 faldo:position ?thisPositionOn130 ;
rdf:type faldo:ExactPosition .
?pfse128 faldo:position ?thisPositionOn131 ;
rdf:type faldo:ExactPosition .
?ligand129 rdfs:subClassOf chebi:29105 .
?pfs132 up:annotation ?annotation133 .
?annotation133 faldo:begin ?pfsb134 ;
faldo:end ?pfse135 ;
up:ligand ?ligand136 ;
rdf:type up:Binding_Site_Annotation .
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rdf:type faldo:ExactPosition .
?pfse135 faldo:position ?thisPositionOn138 ;
rdf:type faldo:ExactPosition .
?ligand136 rdfs:subClassOf chebi:29105 .
?pfs139 up:annotation ?annotation140 .
?annotation140 faldo:begin ?pfsb141 ;
faldo:end ?pfse142 ;
up:ligand ?ligand143 ;
rdf:type up:Binding_Site_Annotation .
?pfsb141 faldo:position ?thisPositionOn144 ;
rdf:type faldo:ExactPosition .
?pfse142 faldo:position ?thisPositionOn145 ;
rdf:type faldo:ExactPosition .
?ligand143 rdfs:subClassOf chebi:29105 .
?pfs146 up:annotation ?annotation147 .
?annotation147 faldo:begin ?pfsb148 ;
faldo:end ?pfse149 ;
up:ligand ?ligand150 ;
rdf:type up:Binding_Site_Annotation .
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rdf:type faldo:ExactPosition .
?pfse149 faldo:position ?thisPositionOn152 ;
rdf:type faldo:ExactPosition .
?ligand150 rdfs:subClassOf chebi:29105 .
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faldo:end ?pfse156 ;
up:ligand ?ligand157 ;
rdf:type up:Binding_Site_Annotation .
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rdf:type faldo:ExactPosition .
?pfse156 faldo:position ?thisPositionOn159 ;
rdf:type faldo:ExactPosition .
?ligand157 rdfs:subClassOf chebi:29105 .
?pfs160 up:annotation ?annotation161 .
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up:ligand ?ligand164 ;
rdf:type up:Binding_Site_Annotation .
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rdf:type faldo:ExactPosition .
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rdf:type faldo:ExactPosition .
?ligand164 rdfs:subClassOf chebi:29105 .
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faldo:end ?pfse170 ;
up:ligand ?ligand171 ;
rdf:type up:Binding_Site_Annotation .
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rdf:type faldo:ExactPosition .
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rdf:type faldo:ExactPosition .
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?pfs174 up:annotation ?annotation175 .
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faldo:end ?pfse177 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'N6-carboxylysine' .
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rdf:type faldo:ExactPosition .
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rdf:type faldo:ExactPosition .
?ligand184 rdfs:subClassOf ?molecule185 .
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rdf:type up:Binding_Site_Annotation .
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rdf:type faldo:ExactPosition .
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rdf:type faldo:ExactPosition .
?ligand192 rdfs:subClassOf ?molecule193 .
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rdf:predicate up:encodedBy ;
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_:93001 a rdf:Statement ;
up:source unirule:MF_00220 ;
rdf:subject ?pfs167 ;
rdf:predicate up:annotation ;
rdf:object ?annotation168 .
_:93002 a rdf:Statement ;
up:attribution _:92939 ;
rdf:subject ?pfs167 ;
rdf:predicate up:annotation ;
rdf:object ?annotation168 .
_:93003 a rdf:Statement ;
up:source unirule:MF_00220 ;
rdf:subject ?pfs174 ;
rdf:predicate up:annotation ;
rdf:object ?annotation175 .
_:93004 a rdf:Statement ;
up:attribution _:92940 ;
rdf:subject ?pfs174 ;
rdf:predicate up:annotation ;
rdf:object ?annotation175 .
_:93005 a rdf:Statement ;
up:source unirule:MF_00220 ;
rdf:subject ?pfs180 ;
rdf:predicate up:annotation ;
rdf:object ?annotation181 .
_:93006 a rdf:Statement ;
up:attribution _:92941 ;
rdf:subject ?pfs180 ;
rdf:predicate up:annotation ;
rdf:object ?annotation181 .
_:93007 a rdf:Statement ;
up:source unirule:MF_00220 ;
rdf:subject ?pfs188 ;
rdf:predicate up:annotation ;
rdf:object ?annotation189 .
_:93008 a rdf:Statement ;
up:attribution _:92942 ;
rdf:subject ?pfs188 ;
rdf:predicate up:annotation ;
rdf:object ?annotation189 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00220
#Rule MF_00220 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-02
{
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00220_B .
?thisOrganism rdfs:subClassOf+ taxon:2 .
} UNION {
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00220_A .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
}
BIND(URI(CONCAT(STR(?this), '#MF_00220a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00220a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_00220a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00220a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00220a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00220a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch200 faldo:location ?templateMotifSequenceMatchRegionQ81WF0201 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ81WF0203 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ81WF0MF_00220_B196 .
?templateMotifSequenceMatchRegionQ81WF0201 faldo:begin ?templateMotifSequenceMatchBeginQ81WF0202 .
?templateMotifSequenceMatchBeginQ81WF0202 faldo:position ?templateMotifSequenceMatchBeginPositionQ81WF0197 ;
faldo:reference isoform:Q81WF0-1 .
?templateMotifSequenceProfileAlignmentOperationQ81WF0203 edam:has_input signature:MF_00220_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch204 faldo:location ?targetMotifMatchRegionMatch205 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00220_B207 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ81WF0MF_00220_B198 .
?targetMotifMatchRegionMatch205 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00220_B206 .
?targetMotifMatchRegionMatchBeginMF_00220_B206 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00220_B199 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00220_B207 edam:has_input signature:MF_00220_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ81WF0MF_00220_B196, 1, (STRLEN(?templateMotifCigarQ81WF0MF_00220_B196) - STRLEN(REPLACE(?templateMotifCigarQ81WF0MF_00220_B196, CONCAT('^(?:-*[^-]){', STR(((61 - ?templateMotifSequenceMatchBeginPositionQ81WF0197) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1208) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ81WF0MF_00220_B198, 1, (STRLEN(?targetMotifMatchCigarQ81WF0MF_00220_B198) - STRLEN(REPLACE(?targetMotifMatchCigarQ81WF0MF_00220_B198, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1208), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ81WF0MF_00220_B198, 1, (STRLEN(?targetMotifMatchCigarQ81WF0MF_00220_B198) - STRLEN(REPLACE(?targetMotifMatchCigarQ81WF0MF_00220_B198, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1208), '}'), '')))), '[^-]', ''))) AS ?step2209) .
BIND(((?step2209 + ?targetMotifMatchRegionMatchBeginPositionMF_00220_B199) - 1) AS ?thisPositionOn14) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ81WF0MF_00220_B196, 1, (STRLEN(?templateMotifCigarQ81WF0MF_00220_B196) - STRLEN(REPLACE(?templateMotifCigarQ81WF0MF_00220_B196, CONCAT('^(?:-*[^-]){', STR(((63 - ?templateMotifSequenceMatchBeginPositionQ81WF0197) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1210) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ81WF0MF_00220_B198, 1, (STRLEN(?targetMotifMatchCigarQ81WF0MF_00220_B198) - STRLEN(REPLACE(?targetMotifMatchCigarQ81WF0MF_00220_B198, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1210), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ81WF0MF_00220_B198, 1, (STRLEN(?targetMotifMatchCigarQ81WF0MF_00220_B198) - STRLEN(REPLACE(?targetMotifMatchCigarQ81WF0MF_00220_B198, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1210), '}'), '')))), '[^-]', ''))) AS ?step2211) .
BIND(((?step2211 + ?targetMotifMatchRegionMatchBeginPositionMF_00220_B199) - 1) AS ?thisPositionOn15) .
BIND(?this AS ?pfs1t212) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse11) .
FILTER (REGEX('H[ARNDCQEGHILKMFPSTWYVBZJUOX]R', SUBSTR(?thisSequenceValue, ?thisPositionOn14, (?thisPositionOn15 - ?thisPositionOn14)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00220a9')) AS ?annotation9) .
BIND(?this AS ?pfs8) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch217 faldo:location ?templateMotifSequenceMatchRegionQ81WF0218 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ81WF0220 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ81WF0MF_00220_B213 .
?templateMotifSequenceMatchRegionQ81WF0218 faldo:begin ?templateMotifSequenceMatchBeginQ81WF0219 .
?templateMotifSequenceMatchBeginQ81WF0219 faldo:position ?templateMotifSequenceMatchBeginPositionQ81WF0214 ;
faldo:reference isoform:Q81WF0-1 .
?templateMotifSequenceProfileAlignmentOperationQ81WF0220 edam:has_input signature:MF_00220_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch221 faldo:location ?targetMotifMatchRegionMatch222 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00220_B224 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ81WF0MF_00220_B215 .
?targetMotifMatchRegionMatch222 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00220_B223 .
?targetMotifMatchRegionMatchBeginMF_00220_B223 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00220_B216 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00220_B224 edam:has_input signature:MF_00220_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ81WF0MF_00220_B213, 1, (STRLEN(?templateMotifCigarQ81WF0MF_00220_B213) - STRLEN(REPLACE(?templateMotifCigarQ81WF0MF_00220_B213, CONCAT('^(?:-*[^-]){', STR(((322 - ?templateMotifSequenceMatchBeginPositionQ81WF0214) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1225) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ81WF0MF_00220_B215, 1, (STRLEN(?targetMotifMatchCigarQ81WF0MF_00220_B215) - STRLEN(REPLACE(?targetMotifMatchCigarQ81WF0MF_00220_B215, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1225), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ81WF0MF_00220_B215, 1, (STRLEN(?targetMotifMatchCigarQ81WF0MF_00220_B215) - STRLEN(REPLACE(?targetMotifMatchCigarQ81WF0MF_00220_B215, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1225), '}'), '')))), '[^-]', ''))) AS ?step2226) .
BIND(((?step2226 + ?targetMotifMatchRegionMatchBeginPositionMF_00220_B216) - 1) AS ?thisPositionOn22) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ81WF0MF_00220_B213, 1, (STRLEN(?templateMotifCigarQ81WF0MF_00220_B213) - STRLEN(REPLACE(?templateMotifCigarQ81WF0MF_00220_B213, CONCAT('^(?:-*[^-]){', STR(((323 - ?templateMotifSequenceMatchBeginPositionQ81WF0214) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1227) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ81WF0MF_00220_B215, 1, (STRLEN(?targetMotifMatchCigarQ81WF0MF_00220_B215) - STRLEN(REPLACE(?targetMotifMatchCigarQ81WF0MF_00220_B215, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1227), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ81WF0MF_00220_B215, 1, (STRLEN(?targetMotifMatchCigarQ81WF0MF_00220_B215) - STRLEN(REPLACE(?targetMotifMatchCigarQ81WF0MF_00220_B215, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1227), '}'), '')))), '[^-]', ''))) AS ?step2228) .
BIND(((?step2228 + ?targetMotifMatchRegionMatchBeginPositionMF_00220_B216) - 1) AS ?thisPositionOn23) .
BIND(?this AS ?pfs1t229) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse19) .
FILTER (REGEX('[FP]G', SUBSTR(?thisSequenceValue, ?thisPositionOn22, (?thisPositionOn23 - ?thisPositionOn22)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00220a17')) AS ?annotation17) .
BIND(?this AS ?pfs16) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch234 faldo:location ?templateMotifSequenceMatchRegionQ81WF0235 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ81WF0237 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ81WF0MF_00220_B230 .
?templateMotifSequenceMatchRegionQ81WF0235 faldo:begin ?templateMotifSequenceMatchBeginQ81WF0236 .
?templateMotifSequenceMatchBeginQ81WF0236 faldo:position ?templateMotifSequenceMatchBeginPositionQ81WF0231 ;
faldo:reference isoform:Q81WF0-1 .
?templateMotifSequenceProfileAlignmentOperationQ81WF0237 edam:has_input signature:MF_00220_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch238 faldo:location ?targetMotifMatchRegionMatch239 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00220_B241 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ81WF0MF_00220_B232 .
?targetMotifMatchRegionMatch239 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00220_B240 .
?targetMotifMatchRegionMatchBeginMF_00220_B240 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00220_B233 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00220_B241 edam:has_input signature:MF_00220_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ81WF0MF_00220_B230, 1, (STRLEN(?templateMotifCigarQ81WF0MF_00220_B230) - STRLEN(REPLACE(?templateMotifCigarQ81WF0MF_00220_B230, CONCAT('^(?:-*[^-]){', STR(((304 - ?templateMotifSequenceMatchBeginPositionQ81WF0231) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1242) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ81WF0MF_00220_B232, 1, (STRLEN(?targetMotifMatchCigarQ81WF0MF_00220_B232) - STRLEN(REPLACE(?targetMotifMatchCigarQ81WF0MF_00220_B232, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1242), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ81WF0MF_00220_B232, 1, (STRLEN(?targetMotifMatchCigarQ81WF0MF_00220_B232) - STRLEN(REPLACE(?targetMotifMatchCigarQ81WF0MF_00220_B232, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1242), '}'), '')))), '[^-]', ''))) AS ?step2243) .
BIND(((?step2243 + ?targetMotifMatchRegionMatchBeginPositionMF_00220_B233) - 1) AS ?thisPositionOn28) .
BIND(?thisPositionOn28 AS ?thisPositionOn29) .
BIND(?this AS ?pfs1t244) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb26) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse27) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn28, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00220a25')) AS ?annotation25) .
BIND(?this AS ?pfs24) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch249 faldo:location ?templateMotifSequenceMatchRegionQ81WF0250 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ81WF0252 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ81WF0MF_00220_B245 .
?templateMotifSequenceMatchRegionQ81WF0250 faldo:begin ?templateMotifSequenceMatchBeginQ81WF0251 .
?templateMotifSequenceMatchBeginQ81WF0251 faldo:position ?templateMotifSequenceMatchBeginPositionQ81WF0246 ;
faldo:reference isoform:Q81WF0-1 .
?templateMotifSequenceProfileAlignmentOperationQ81WF0252 edam:has_input signature:MF_00220_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch253 faldo:location ?targetMotifMatchRegionMatch254 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00220_B256 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ81WF0MF_00220_B247 .
?targetMotifMatchRegionMatch254 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00220_B255 .
?targetMotifMatchRegionMatchBeginMF_00220_B255 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00220_B248 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00220_B256 edam:has_input signature:MF_00220_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ81WF0MF_00220_B245, 1, (STRLEN(?templateMotifCigarQ81WF0MF_00220_B245) - STRLEN(REPLACE(?templateMotifCigarQ81WF0MF_00220_B245, CONCAT('^(?:-*[^-]){', STR(((59 - ?templateMotifSequenceMatchBeginPositionQ81WF0246) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1257) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ81WF0MF_00220_B247, 1, (STRLEN(?targetMotifMatchCigarQ81WF0MF_00220_B247) - STRLEN(REPLACE(?targetMotifMatchCigarQ81WF0MF_00220_B247, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1257), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ81WF0MF_00220_B247, 1, (STRLEN(?targetMotifMatchCigarQ81WF0MF_00220_B247) - STRLEN(REPLACE(?targetMotifMatchCigarQ81WF0MF_00220_B247, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1257), '}'), '')))), '[^-]', ''))) AS ?step2258) .
BIND(((?step2258 + ?targetMotifMatchRegionMatchBeginPositionMF_00220_B248) - 1) AS ?thisPositionOn35) .
BIND(?thisPositionOn35 AS ?thisPositionOn36) .
BIND(?this AS ?pfs1t259) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfsb32) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfse33) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn35, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00220a31')) AS ?annotation31) .
BIND(?this AS ?pfs30) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch264 faldo:location ?templateMotifSequenceMatchRegionQ81WF0265 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ81WF0267 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ81WF0MF_00220_B260 .
?templateMotifSequenceMatchRegionQ81WF0265 faldo:begin ?templateMotifSequenceMatchBeginQ81WF0266 .
?templateMotifSequenceMatchBeginQ81WF0266 faldo:position ?templateMotifSequenceMatchBeginPositionQ81WF0261 ;
faldo:reference isoform:Q81WF0-1 .
?templateMotifSequenceProfileAlignmentOperationQ81WF0267 edam:has_input signature:MF_00220_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch268 faldo:location ?targetMotifMatchRegionMatch269 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00220_B271 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ81WF0MF_00220_B262 .
?targetMotifMatchRegionMatch269 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00220_B270 .
?targetMotifMatchRegionMatchBeginMF_00220_B270 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00220_B263 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00220_B271 edam:has_input signature:MF_00220_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ81WF0MF_00220_B260, 1, (STRLEN(?templateMotifCigarQ81WF0MF_00220_B260) - STRLEN(REPLACE(?templateMotifCigarQ81WF0MF_00220_B260, CONCAT('^(?:-*[^-]){', STR(((61 - ?templateMotifSequenceMatchBeginPositionQ81WF0261) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1272) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ81WF0MF_00220_B262, 1, (STRLEN(?targetMotifMatchCigarQ81WF0MF_00220_B262) - STRLEN(REPLACE(?targetMotifMatchCigarQ81WF0MF_00220_B262, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1272), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ81WF0MF_00220_B262, 1, (STRLEN(?targetMotifMatchCigarQ81WF0MF_00220_B262) - STRLEN(REPLACE(?targetMotifMatchCigarQ81WF0MF_00220_B262, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1272), '}'), '')))), '[^-]', ''))) AS ?step2273) .
BIND(((?step2273 + ?targetMotifMatchRegionMatchBeginPositionMF_00220_B263) - 1) AS ?thisPositionOn42) .
BIND(?thisPositionOn42 AS ?thisPositionOn43) .
BIND(?this AS ?pfs1t274) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb39) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse40) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn42, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00220a38')) AS ?annotation38) .
BIND(?this AS ?pfs37) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch279 faldo:location ?templateMotifSequenceMatchRegionQ81WF0280 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ81WF0282 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ81WF0MF_00220_B275 .
?templateMotifSequenceMatchRegionQ81WF0280 faldo:begin ?templateMotifSequenceMatchBeginQ81WF0281 .
?templateMotifSequenceMatchBeginQ81WF0281 faldo:position ?templateMotifSequenceMatchBeginPositionQ81WF0276 ;
faldo:reference isoform:Q81WF0-1 .
?templateMotifSequenceProfileAlignmentOperationQ81WF0282 edam:has_input signature:MF_00220_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch283 faldo:location ?targetMotifMatchRegionMatch284 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00220_B286 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ81WF0MF_00220_B277 .
?targetMotifMatchRegionMatch284 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00220_B285 .
?targetMotifMatchRegionMatchBeginMF_00220_B285 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00220_B278 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00220_B286 edam:has_input signature:MF_00220_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ81WF0MF_00220_B275, 1, (STRLEN(?templateMotifCigarQ81WF0MF_00220_B275) - STRLEN(REPLACE(?templateMotifCigarQ81WF0MF_00220_B275, CONCAT('^(?:-*[^-]){', STR(((151 - ?templateMotifSequenceMatchBeginPositionQ81WF0276) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1287) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ81WF0MF_00220_B277, 1, (STRLEN(?targetMotifMatchCigarQ81WF0MF_00220_B277) - STRLEN(REPLACE(?targetMotifMatchCigarQ81WF0MF_00220_B277, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1287), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ81WF0MF_00220_B277, 1, (STRLEN(?targetMotifMatchCigarQ81WF0MF_00220_B277) - STRLEN(REPLACE(?targetMotifMatchCigarQ81WF0MF_00220_B277, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1287), '}'), '')))), '[^-]', ''))) AS ?step2288) .
BIND(((?step2288 + ?targetMotifMatchRegionMatchBeginPositionMF_00220_B278) - 1) AS ?thisPositionOn49) .
BIND(?thisPositionOn49 AS ?thisPositionOn50) .
BIND(?this AS ?pfs1t289) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfsb46) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfse47) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn49, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00220a45')) AS ?annotation45) .
BIND(?this AS ?pfs44) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch294 faldo:location ?templateMotifSequenceMatchRegionQ81WF0295 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ81WF0297 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ81WF0MF_00220_B290 .
?templateMotifSequenceMatchRegionQ81WF0295 faldo:begin ?templateMotifSequenceMatchBeginQ81WF0296 .
?templateMotifSequenceMatchBeginQ81WF0296 faldo:position ?templateMotifSequenceMatchBeginPositionQ81WF0291 ;
faldo:reference isoform:Q81WF0-1 .
?templateMotifSequenceProfileAlignmentOperationQ81WF0297 edam:has_input signature:MF_00220_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch298 faldo:location ?targetMotifMatchRegionMatch299 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00220_B301 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ81WF0MF_00220_B292 .
?targetMotifMatchRegionMatch299 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00220_B300 .
?targetMotifMatchRegionMatchBeginMF_00220_B300 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00220_B293 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00220_B301 edam:has_input signature:MF_00220_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ81WF0MF_00220_B290, 1, (STRLEN(?templateMotifCigarQ81WF0MF_00220_B290) - STRLEN(REPLACE(?templateMotifCigarQ81WF0MF_00220_B290, CONCAT('^(?:-*[^-]){', STR(((151 - ?templateMotifSequenceMatchBeginPositionQ81WF0291) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1302) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ81WF0MF_00220_B292, 1, (STRLEN(?targetMotifMatchCigarQ81WF0MF_00220_B292) - STRLEN(REPLACE(?targetMotifMatchCigarQ81WF0MF_00220_B292, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1302), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ81WF0MF_00220_B292, 1, (STRLEN(?targetMotifMatchCigarQ81WF0MF_00220_B292) - STRLEN(REPLACE(?targetMotifMatchCigarQ81WF0MF_00220_B292, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1302), '}'), '')))), '[^-]', ''))) AS ?step2303) .
BIND(((?step2303 + ?targetMotifMatchRegionMatchBeginPositionMF_00220_B293) - 1) AS ?thisPositionOn56) .
BIND(?thisPositionOn56 AS ?thisPositionOn57) .
BIND(?this AS ?pfs1t304) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfsb53) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfse54) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn56, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00220a52')) AS ?annotation52) .
BIND(?this AS ?pfs51) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch309 faldo:location ?templateMotifSequenceMatchRegionQ81WF0310 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ81WF0312 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ81WF0MF_00220_B305 .
?templateMotifSequenceMatchRegionQ81WF0310 faldo:begin ?templateMotifSequenceMatchBeginQ81WF0311 .
?templateMotifSequenceMatchBeginQ81WF0311 faldo:position ?templateMotifSequenceMatchBeginPositionQ81WF0306 ;
faldo:reference isoform:Q81WF0-1 .
?templateMotifSequenceProfileAlignmentOperationQ81WF0312 edam:has_input signature:MF_00220_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch313 faldo:location ?targetMotifMatchRegionMatch314 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00220_B316 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ81WF0MF_00220_B307 .
?targetMotifMatchRegionMatch314 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00220_B315 .
?targetMotifMatchRegionMatchBeginMF_00220_B315 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00220_B308 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00220_B316 edam:has_input signature:MF_00220_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ81WF0MF_00220_B305, 1, (STRLEN(?templateMotifCigarQ81WF0MF_00220_B305) - STRLEN(REPLACE(?templateMotifCigarQ81WF0MF_00220_B305, CONCAT('^(?:-*[^-]){', STR(((178 - ?templateMotifSequenceMatchBeginPositionQ81WF0306) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1317) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ81WF0MF_00220_B307, 1, (STRLEN(?targetMotifMatchCigarQ81WF0MF_00220_B307) - STRLEN(REPLACE(?targetMotifMatchCigarQ81WF0MF_00220_B307, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1317), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ81WF0MF_00220_B307, 1, (STRLEN(?targetMotifMatchCigarQ81WF0MF_00220_B307) - STRLEN(REPLACE(?targetMotifMatchCigarQ81WF0MF_00220_B307, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1317), '}'), '')))), '[^-]', ''))) AS ?step2318) .
BIND(((?step2318 + ?targetMotifMatchRegionMatchBeginPositionMF_00220_B308) - 1) AS ?thisPositionOn63) .
BIND(?thisPositionOn63 AS ?thisPositionOn64) .
BIND(?this AS ?pfs1t319) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfsb60) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfse61) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn63, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00220a59')) AS ?annotation59) .
BIND(?this AS ?pfs58) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch324 faldo:location ?templateMotifSequenceMatchRegionQ81WF0325 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ81WF0327 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ81WF0MF_00220_B320 .
?templateMotifSequenceMatchRegionQ81WF0325 faldo:begin ?templateMotifSequenceMatchBeginQ81WF0326 .
?templateMotifSequenceMatchBeginQ81WF0326 faldo:position ?templateMotifSequenceMatchBeginPositionQ81WF0321 ;
faldo:reference isoform:Q81WF0-1 .
?templateMotifSequenceProfileAlignmentOperationQ81WF0327 edam:has_input signature:MF_00220_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch328 faldo:location ?targetMotifMatchRegionMatch329 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00220_B331 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ81WF0MF_00220_B322 .
?targetMotifMatchRegionMatch329 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00220_B330 .
?targetMotifMatchRegionMatchBeginMF_00220_B330 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00220_B323 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00220_B331 edam:has_input signature:MF_00220_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ81WF0MF_00220_B320, 1, (STRLEN(?templateMotifCigarQ81WF0MF_00220_B320) - STRLEN(REPLACE(?templateMotifCigarQ81WF0MF_00220_B320, CONCAT('^(?:-*[^-]){', STR(((231 - ?templateMotifSequenceMatchBeginPositionQ81WF0321) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1332) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ81WF0MF_00220_B322, 1, (STRLEN(?targetMotifMatchCigarQ81WF0MF_00220_B322) - STRLEN(REPLACE(?targetMotifMatchCigarQ81WF0MF_00220_B322, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1332), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ81WF0MF_00220_B322, 1, (STRLEN(?targetMotifMatchCigarQ81WF0MF_00220_B322) - STRLEN(REPLACE(?targetMotifMatchCigarQ81WF0MF_00220_B322, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1332), '}'), '')))), '[^-]', ''))) AS ?step2333) .
BIND(((?step2333 + ?targetMotifMatchRegionMatchBeginPositionMF_00220_B323) - 1) AS ?thisPositionOn70) .
BIND(?thisPositionOn70 AS ?thisPositionOn71) .
BIND(?this AS ?pfs1t334) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn70))) AS ?pfsb67) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn71))) AS ?pfse68) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn70, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00220a66')) AS ?annotation66) .
BIND(?this AS ?pfs65) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch339 faldo:location ?templateMotifSequenceMatchRegionQ81WF0340 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ81WF0342 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ81WF0MF_00220_B335 .
?templateMotifSequenceMatchRegionQ81WF0340 faldo:begin ?templateMotifSequenceMatchBeginQ81WF0341 .
?templateMotifSequenceMatchBeginQ81WF0341 faldo:position ?templateMotifSequenceMatchBeginPositionQ81WF0336 ;
faldo:reference isoform:Q81WF0-1 .
?templateMotifSequenceProfileAlignmentOperationQ81WF0342 edam:has_input signature:MF_00220_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch343 faldo:location ?targetMotifMatchRegionMatch344 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00220_B346 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ81WF0MF_00220_B337 .
?targetMotifMatchRegionMatch344 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00220_B345 .
?targetMotifMatchRegionMatchBeginMF_00220_B345 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00220_B338 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00220_B346 edam:has_input signature:MF_00220_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ81WF0MF_00220_B335, 1, (STRLEN(?templateMotifCigarQ81WF0MF_00220_B335) - STRLEN(REPLACE(?templateMotifCigarQ81WF0MF_00220_B335, CONCAT('^(?:-*[^-]){', STR(((304 - ?templateMotifSequenceMatchBeginPositionQ81WF0336) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1347) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ81WF0MF_00220_B337, 1, (STRLEN(?targetMotifMatchCigarQ81WF0MF_00220_B337) - STRLEN(REPLACE(?targetMotifMatchCigarQ81WF0MF_00220_B337, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1347), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ81WF0MF_00220_B337, 1, (STRLEN(?targetMotifMatchCigarQ81WF0MF_00220_B337) - STRLEN(REPLACE(?targetMotifMatchCigarQ81WF0MF_00220_B337, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1347), '}'), '')))), '[^-]', ''))) AS ?step2348) .
BIND(((?step2348 + ?targetMotifMatchRegionMatchBeginPositionMF_00220_B338) - 1) AS ?thisPositionOn77) .
BIND(?thisPositionOn77 AS ?thisPositionOn78) .
BIND(?this AS ?pfs1t349) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn77))) AS ?pfsb74) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn78))) AS ?pfse75) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn77, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00220a73')) AS ?annotation73) .
BIND(?this AS ?pfs72) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch354 faldo:location ?templateMotifSequenceMatchRegionQ81WF0355 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ81WF0357 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ81WF0MF_00220_B350 .
?templateMotifSequenceMatchRegionQ81WF0355 faldo:begin ?templateMotifSequenceMatchBeginQ81WF0356 .
?templateMotifSequenceMatchBeginQ81WF0356 faldo:position ?templateMotifSequenceMatchBeginPositionQ81WF0351 ;
faldo:reference isoform:Q81WF0-1 .
?templateMotifSequenceProfileAlignmentOperationQ81WF0357 edam:has_input signature:MF_00220_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch358 faldo:location ?targetMotifMatchRegionMatch359 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00220_B361 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ81WF0MF_00220_B352 .
?targetMotifMatchRegionMatch359 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00220_B360 .
?targetMotifMatchRegionMatchBeginMF_00220_B360 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00220_B353 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00220_B361 edam:has_input signature:MF_00220_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ81WF0MF_00220_B350, 1, (STRLEN(?templateMotifCigarQ81WF0MF_00220_B350) - STRLEN(REPLACE(?templateMotifCigarQ81WF0MF_00220_B350, CONCAT('^(?:-*[^-]){', STR(((93 - ?templateMotifSequenceMatchBeginPositionQ81WF0351) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1362) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ81WF0MF_00220_B352, 1, (STRLEN(?targetMotifMatchCigarQ81WF0MF_00220_B352) - STRLEN(REPLACE(?targetMotifMatchCigarQ81WF0MF_00220_B352, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1362), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ81WF0MF_00220_B352, 1, (STRLEN(?targetMotifMatchCigarQ81WF0MF_00220_B352) - STRLEN(REPLACE(?targetMotifMatchCigarQ81WF0MF_00220_B352, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1362), '}'), '')))), '[^-]', ''))) AS ?step2363) .
BIND(((?step2363 + ?targetMotifMatchRegionMatchBeginPositionMF_00220_B353) - 1) AS ?thisPositionOn85) .
BIND(?thisPositionOn85 AS ?thisPositionOn86) .
BIND(?this AS ?pfs1t364) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn85))) AS ?pfsb81) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn86))) AS ?pfse82) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn85, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_00220a80')) AS ?annotation80) .
BIND(?this AS ?pfs79) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch369 faldo:location ?templateMotifSequenceMatchRegionQ81WF0370 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ81WF0372 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ81WF0MF_00220_B365 .
?templateMotifSequenceMatchRegionQ81WF0370 faldo:begin ?templateMotifSequenceMatchBeginQ81WF0371 .
?templateMotifSequenceMatchBeginQ81WF0371 faldo:position ?templateMotifSequenceMatchBeginPositionQ81WF0366 ;
faldo:reference isoform:Q81WF0-1 .
?templateMotifSequenceProfileAlignmentOperationQ81WF0372 edam:has_input signature:MF_00220_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch373 faldo:location ?targetMotifMatchRegionMatch374 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00220_B376 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ81WF0MF_00220_B367 .
?targetMotifMatchRegionMatch374 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00220_B375 .
?targetMotifMatchRegionMatchBeginMF_00220_B375 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00220_B368 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00220_B376 edam:has_input signature:MF_00220_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ81WF0MF_00220_B365, 1, (STRLEN(?templateMotifCigarQ81WF0MF_00220_B365) - STRLEN(REPLACE(?templateMotifCigarQ81WF0MF_00220_B365, CONCAT('^(?:-*[^-]){', STR(((277 - ?templateMotifSequenceMatchBeginPositionQ81WF0366) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1377) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ81WF0MF_00220_B367, 1, (STRLEN(?targetMotifMatchCigarQ81WF0MF_00220_B367) - STRLEN(REPLACE(?targetMotifMatchCigarQ81WF0MF_00220_B367, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1377), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ81WF0MF_00220_B367, 1, (STRLEN(?targetMotifMatchCigarQ81WF0MF_00220_B367) - STRLEN(REPLACE(?targetMotifMatchCigarQ81WF0MF_00220_B367, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1377), '}'), '')))), '[^-]', ''))) AS ?step2378) .
BIND(((?step2378 + ?targetMotifMatchRegionMatchBeginPositionMF_00220_B368) - 1) AS ?thisPositionOn93) .
BIND(?thisPositionOn93 AS ?thisPositionOn94) .
BIND(?this AS ?pfs1t379) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn93))) AS ?pfsb89) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn94))) AS ?pfse90) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn93, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_00220a88')) AS ?annotation88) .
BIND(?this AS ?pfs87) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch384 faldo:location ?templateMotifSequenceMatchRegionQ81WF0385 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ81WF0387 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ81WF0MF_00220_B380 .
?templateMotifSequenceMatchRegionQ81WF0385 faldo:begin ?templateMotifSequenceMatchBeginQ81WF0386 .
?templateMotifSequenceMatchBeginQ81WF0386 faldo:position ?templateMotifSequenceMatchBeginPositionQ81WF0381 ;
faldo:reference isoform:Q81WF0-1 .
?templateMotifSequenceProfileAlignmentOperationQ81WF0387 edam:has_input signature:MF_00220_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch388 faldo:location ?targetMotifMatchRegionMatch389 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00220_B391 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ81WF0MF_00220_B382 .
?targetMotifMatchRegionMatch389 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00220_B390 .
?targetMotifMatchRegionMatchBeginMF_00220_B390 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00220_B383 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00220_B391 edam:has_input signature:MF_00220_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ81WF0MF_00220_B380, 1, (STRLEN(?templateMotifCigarQ81WF0MF_00220_B380) - STRLEN(REPLACE(?templateMotifCigarQ81WF0MF_00220_B380, CONCAT('^(?:-*[^-]){', STR(((308 - ?templateMotifSequenceMatchBeginPositionQ81WF0381) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1392) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ81WF0MF_00220_B382, 1, (STRLEN(?targetMotifMatchCigarQ81WF0MF_00220_B382) - STRLEN(REPLACE(?targetMotifMatchCigarQ81WF0MF_00220_B382, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1392), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ81WF0MF_00220_B382, 1, (STRLEN(?targetMotifMatchCigarQ81WF0MF_00220_B382) - STRLEN(REPLACE(?targetMotifMatchCigarQ81WF0MF_00220_B382, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1392), '}'), '')))), '[^-]', ''))) AS ?step2393) .
BIND(((?step2393 + ?targetMotifMatchRegionMatchBeginPositionMF_00220_B383) - 1) AS ?thisPositionOn101) .
BIND(?thisPositionOn101 AS ?thisPositionOn102) .
BIND(?this AS ?pfs1t394) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn101))) AS ?pfsb97) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn102))) AS ?pfse98) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn101, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00220a96')) AS ?annotation96) .
BIND(?this AS ?pfs95) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch399 faldo:location ?templateMotifSequenceMatchRegionQ9UXV6400 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9UXV6402 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9UXV6MF_00220_A395 .
?templateMotifSequenceMatchRegionQ9UXV6400 faldo:begin ?templateMotifSequenceMatchBeginQ9UXV6401 .
?templateMotifSequenceMatchBeginQ9UXV6401 faldo:position ?templateMotifSequenceMatchBeginPositionQ9UXV6396 ;
faldo:reference isoform:Q9UXV6-1 .
?templateMotifSequenceProfileAlignmentOperationQ9UXV6402 edam:has_input signature:MF_00220_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch403 faldo:location ?targetMotifMatchRegionMatch404 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00220_A406 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9UXV6MF_00220_A397 .
?targetMotifMatchRegionMatch404 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00220_A405 .
?targetMotifMatchRegionMatchBeginMF_00220_A405 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00220_A398 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00220_A406 edam:has_input signature:MF_00220_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UXV6MF_00220_A395, 1, (STRLEN(?templateMotifCigarQ9UXV6MF_00220_A395) - STRLEN(REPLACE(?templateMotifCigarQ9UXV6MF_00220_A395, CONCAT('^(?:-*[^-]){', STR(((59 - ?templateMotifSequenceMatchBeginPositionQ9UXV6396) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1407) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UXV6MF_00220_A397, 1, (STRLEN(?targetMotifMatchCigarQ9UXV6MF_00220_A397) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXV6MF_00220_A397, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1407), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UXV6MF_00220_A397, 1, (STRLEN(?targetMotifMatchCigarQ9UXV6MF_00220_A397) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXV6MF_00220_A397, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1407), '}'), '')))), '[^-]', ''))) AS ?step2408) .
BIND(((?step2408 + ?targetMotifMatchRegionMatchBeginPositionMF_00220_A398) - 1) AS ?thisPositionOn109) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UXV6MF_00220_A395, 1, (STRLEN(?templateMotifCigarQ9UXV6MF_00220_A395) - STRLEN(REPLACE(?templateMotifCigarQ9UXV6MF_00220_A395, CONCAT('^(?:-*[^-]){', STR(((61 - ?templateMotifSequenceMatchBeginPositionQ9UXV6396) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1409) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UXV6MF_00220_A397, 1, (STRLEN(?targetMotifMatchCigarQ9UXV6MF_00220_A397) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXV6MF_00220_A397, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1409), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UXV6MF_00220_A397, 1, (STRLEN(?targetMotifMatchCigarQ9UXV6MF_00220_A397) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXV6MF_00220_A397, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1409), '}'), '')))), '[^-]', ''))) AS ?step2410) .
BIND(((?step2410 + ?targetMotifMatchRegionMatchBeginPositionMF_00220_A398) - 1) AS ?thisPositionOn110) .
BIND(?this AS ?pfs2t411) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn109))) AS ?pfsb105) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn110))) AS ?pfse106) .
FILTER (REGEX('H[ARNDCQEGHILKMFPSTWYVBZJUOX]R', SUBSTR(?thisSequenceValue, ?thisPositionOn109, (?thisPositionOn110 - ?thisPositionOn109)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00220a104')) AS ?annotation104) .
BIND(?this AS ?pfs103) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch416 faldo:location ?templateMotifSequenceMatchRegionQ9UXV6417 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9UXV6419 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9UXV6MF_00220_A412 .
?templateMotifSequenceMatchRegionQ9UXV6417 faldo:begin ?templateMotifSequenceMatchBeginQ9UXV6418 .
?templateMotifSequenceMatchBeginQ9UXV6418 faldo:position ?templateMotifSequenceMatchBeginPositionQ9UXV6413 ;
faldo:reference isoform:Q9UXV6-1 .
?templateMotifSequenceProfileAlignmentOperationQ9UXV6419 edam:has_input signature:MF_00220_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch420 faldo:location ?targetMotifMatchRegionMatch421 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00220_A423 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9UXV6MF_00220_A414 .
?targetMotifMatchRegionMatch421 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00220_A422 .
?targetMotifMatchRegionMatchBeginMF_00220_A422 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00220_A415 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00220_A423 edam:has_input signature:MF_00220_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UXV6MF_00220_A412, 1, (STRLEN(?templateMotifCigarQ9UXV6MF_00220_A412) - STRLEN(REPLACE(?templateMotifCigarQ9UXV6MF_00220_A412, CONCAT('^(?:-*[^-]){', STR(((286 - ?templateMotifSequenceMatchBeginPositionQ9UXV6413) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1424) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UXV6MF_00220_A414, 1, (STRLEN(?targetMotifMatchCigarQ9UXV6MF_00220_A414) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXV6MF_00220_A414, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1424), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UXV6MF_00220_A414, 1, (STRLEN(?targetMotifMatchCigarQ9UXV6MF_00220_A414) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXV6MF_00220_A414, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1424), '}'), '')))), '[^-]', ''))) AS ?step2425) .
BIND(((?step2425 + ?targetMotifMatchRegionMatchBeginPositionMF_00220_A415) - 1) AS ?thisPositionOn117) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UXV6MF_00220_A412, 1, (STRLEN(?templateMotifCigarQ9UXV6MF_00220_A412) - STRLEN(REPLACE(?templateMotifCigarQ9UXV6MF_00220_A412, CONCAT('^(?:-*[^-]){', STR(((287 - ?templateMotifSequenceMatchBeginPositionQ9UXV6413) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1426) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UXV6MF_00220_A414, 1, (STRLEN(?targetMotifMatchCigarQ9UXV6MF_00220_A414) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXV6MF_00220_A414, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1426), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UXV6MF_00220_A414, 1, (STRLEN(?targetMotifMatchCigarQ9UXV6MF_00220_A414) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXV6MF_00220_A414, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1426), '}'), '')))), '[^-]', ''))) AS ?step2427) .
BIND(((?step2427 + ?targetMotifMatchRegionMatchBeginPositionMF_00220_A415) - 1) AS ?thisPositionOn118) .
BIND(?this AS ?pfs2t428) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn117))) AS ?pfsb113) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn118))) AS ?pfse114) .
FILTER (REGEX('[FPA]G', SUBSTR(?thisSequenceValue, ?thisPositionOn117, (?thisPositionOn118 - ?thisPositionOn117)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00220a112')) AS ?annotation112) .
BIND(?this AS ?pfs111) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch433 faldo:location ?templateMotifSequenceMatchRegionQ9UXV6434 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9UXV6436 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9UXV6MF_00220_A429 .
?templateMotifSequenceMatchRegionQ9UXV6434 faldo:begin ?templateMotifSequenceMatchBeginQ9UXV6435 .
?templateMotifSequenceMatchBeginQ9UXV6435 faldo:position ?templateMotifSequenceMatchBeginPositionQ9UXV6430 ;
faldo:reference isoform:Q9UXV6-1 .
?templateMotifSequenceProfileAlignmentOperationQ9UXV6436 edam:has_input signature:MF_00220_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch437 faldo:location ?targetMotifMatchRegionMatch438 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00220_A440 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9UXV6MF_00220_A431 .
?targetMotifMatchRegionMatch438 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00220_A439 .
?targetMotifMatchRegionMatchBeginMF_00220_A439 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00220_A432 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00220_A440 edam:has_input signature:MF_00220_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UXV6MF_00220_A429, 1, (STRLEN(?templateMotifCigarQ9UXV6MF_00220_A429) - STRLEN(REPLACE(?templateMotifCigarQ9UXV6MF_00220_A429, CONCAT('^(?:-*[^-]){', STR(((272 - ?templateMotifSequenceMatchBeginPositionQ9UXV6430) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1441) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UXV6MF_00220_A431, 1, (STRLEN(?targetMotifMatchCigarQ9UXV6MF_00220_A431) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXV6MF_00220_A431, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1441), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UXV6MF_00220_A431, 1, (STRLEN(?targetMotifMatchCigarQ9UXV6MF_00220_A431) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXV6MF_00220_A431, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1441), '}'), '')))), '[^-]', ''))) AS ?step2442) .
BIND(((?step2442 + ?targetMotifMatchRegionMatchBeginPositionMF_00220_A432) - 1) AS ?thisPositionOn123) .
BIND(?thisPositionOn123 AS ?thisPositionOn124) .
BIND(?this AS ?pfs2t443) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn123))) AS ?pfsb121) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn124))) AS ?pfse122) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn123, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00220a120')) AS ?annotation120) .
BIND(?this AS ?pfs119) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch448 faldo:location ?templateMotifSequenceMatchRegionQ9UXV6449 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9UXV6451 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9UXV6MF_00220_A444 .
?templateMotifSequenceMatchRegionQ9UXV6449 faldo:begin ?templateMotifSequenceMatchBeginQ9UXV6450 .
?templateMotifSequenceMatchBeginQ9UXV6450 faldo:position ?templateMotifSequenceMatchBeginPositionQ9UXV6445 ;
faldo:reference isoform:Q9UXV6-1 .
?templateMotifSequenceProfileAlignmentOperationQ9UXV6451 edam:has_input signature:MF_00220_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch452 faldo:location ?targetMotifMatchRegionMatch453 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00220_A455 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9UXV6MF_00220_A446 .
?targetMotifMatchRegionMatch453 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00220_A454 .
?targetMotifMatchRegionMatchBeginMF_00220_A454 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00220_A447 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00220_A455 edam:has_input signature:MF_00220_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UXV6MF_00220_A444, 1, (STRLEN(?templateMotifCigarQ9UXV6MF_00220_A444) - STRLEN(REPLACE(?templateMotifCigarQ9UXV6MF_00220_A444, CONCAT('^(?:-*[^-]){', STR(((57 - ?templateMotifSequenceMatchBeginPositionQ9UXV6445) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1456) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UXV6MF_00220_A446, 1, (STRLEN(?targetMotifMatchCigarQ9UXV6MF_00220_A446) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXV6MF_00220_A446, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1456), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UXV6MF_00220_A446, 1, (STRLEN(?targetMotifMatchCigarQ9UXV6MF_00220_A446) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXV6MF_00220_A446, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1456), '}'), '')))), '[^-]', ''))) AS ?step2457) .
BIND(((?step2457 + ?targetMotifMatchRegionMatchBeginPositionMF_00220_A447) - 1) AS ?thisPositionOn130) .
BIND(?thisPositionOn130 AS ?thisPositionOn131) .
BIND(?this AS ?pfs2t458) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn130))) AS ?pfsb127) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn131))) AS ?pfse128) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn130, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00220a126')) AS ?annotation126) .
BIND(?this AS ?pfs125) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch463 faldo:location ?templateMotifSequenceMatchRegionQ9UXV6464 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9UXV6466 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9UXV6MF_00220_A459 .
?templateMotifSequenceMatchRegionQ9UXV6464 faldo:begin ?templateMotifSequenceMatchBeginQ9UXV6465 .
?templateMotifSequenceMatchBeginQ9UXV6465 faldo:position ?templateMotifSequenceMatchBeginPositionQ9UXV6460 ;
faldo:reference isoform:Q9UXV6-1 .
?templateMotifSequenceProfileAlignmentOperationQ9UXV6466 edam:has_input signature:MF_00220_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch467 faldo:location ?targetMotifMatchRegionMatch468 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00220_A470 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9UXV6MF_00220_A461 .
?targetMotifMatchRegionMatch468 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00220_A469 .
?targetMotifMatchRegionMatchBeginMF_00220_A469 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00220_A462 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00220_A470 edam:has_input signature:MF_00220_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UXV6MF_00220_A459, 1, (STRLEN(?templateMotifCigarQ9UXV6MF_00220_A459) - STRLEN(REPLACE(?templateMotifCigarQ9UXV6MF_00220_A459, CONCAT('^(?:-*[^-]){', STR(((59 - ?templateMotifSequenceMatchBeginPositionQ9UXV6460) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1471) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UXV6MF_00220_A461, 1, (STRLEN(?targetMotifMatchCigarQ9UXV6MF_00220_A461) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXV6MF_00220_A461, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1471), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UXV6MF_00220_A461, 1, (STRLEN(?targetMotifMatchCigarQ9UXV6MF_00220_A461) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXV6MF_00220_A461, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1471), '}'), '')))), '[^-]', ''))) AS ?step2472) .
BIND(((?step2472 + ?targetMotifMatchRegionMatchBeginPositionMF_00220_A462) - 1) AS ?thisPositionOn137) .
BIND(?thisPositionOn137 AS ?thisPositionOn138) .
BIND(?this AS ?pfs2t473) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn137))) AS ?pfsb134) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn138))) AS ?pfse135) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn137, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00220a133')) AS ?annotation133) .
BIND(?this AS ?pfs132) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch478 faldo:location ?templateMotifSequenceMatchRegionQ9UXV6479 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9UXV6481 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9UXV6MF_00220_A474 .
?templateMotifSequenceMatchRegionQ9UXV6479 faldo:begin ?templateMotifSequenceMatchBeginQ9UXV6480 .
?templateMotifSequenceMatchBeginQ9UXV6480 faldo:position ?templateMotifSequenceMatchBeginPositionQ9UXV6475 ;
faldo:reference isoform:Q9UXV6-1 .
?templateMotifSequenceProfileAlignmentOperationQ9UXV6481 edam:has_input signature:MF_00220_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch482 faldo:location ?targetMotifMatchRegionMatch483 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00220_A485 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9UXV6MF_00220_A476 .
?targetMotifMatchRegionMatch483 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00220_A484 .
?targetMotifMatchRegionMatchBeginMF_00220_A484 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00220_A477 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00220_A485 edam:has_input signature:MF_00220_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UXV6MF_00220_A474, 1, (STRLEN(?templateMotifCigarQ9UXV6MF_00220_A474) - STRLEN(REPLACE(?templateMotifCigarQ9UXV6MF_00220_A474, CONCAT('^(?:-*[^-]){', STR(((135 - ?templateMotifSequenceMatchBeginPositionQ9UXV6475) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1486) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UXV6MF_00220_A476, 1, (STRLEN(?targetMotifMatchCigarQ9UXV6MF_00220_A476) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXV6MF_00220_A476, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1486), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UXV6MF_00220_A476, 1, (STRLEN(?targetMotifMatchCigarQ9UXV6MF_00220_A476) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXV6MF_00220_A476, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1486), '}'), '')))), '[^-]', ''))) AS ?step2487) .
BIND(((?step2487 + ?targetMotifMatchRegionMatchBeginPositionMF_00220_A477) - 1) AS ?thisPositionOn144) .
BIND(?thisPositionOn144 AS ?thisPositionOn145) .
BIND(?this AS ?pfs2t488) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn144))) AS ?pfsb141) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn145))) AS ?pfse142) .
FILTER (REGEX('[KE]', SUBSTR(?thisSequenceValue, ?thisPositionOn144, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00220a140')) AS ?annotation140) .
BIND(?this AS ?pfs139) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch493 faldo:location ?templateMotifSequenceMatchRegionQ9UXV6494 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9UXV6496 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9UXV6MF_00220_A489 .
?templateMotifSequenceMatchRegionQ9UXV6494 faldo:begin ?templateMotifSequenceMatchBeginQ9UXV6495 .
?templateMotifSequenceMatchBeginQ9UXV6495 faldo:position ?templateMotifSequenceMatchBeginPositionQ9UXV6490 ;
faldo:reference isoform:Q9UXV6-1 .
?templateMotifSequenceProfileAlignmentOperationQ9UXV6496 edam:has_input signature:MF_00220_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch497 faldo:location ?targetMotifMatchRegionMatch498 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00220_A500 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9UXV6MF_00220_A491 .
?targetMotifMatchRegionMatch498 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00220_A499 .
?targetMotifMatchRegionMatchBeginMF_00220_A499 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00220_A492 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00220_A500 edam:has_input signature:MF_00220_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UXV6MF_00220_A489, 1, (STRLEN(?templateMotifCigarQ9UXV6MF_00220_A489) - STRLEN(REPLACE(?templateMotifCigarQ9UXV6MF_00220_A489, CONCAT('^(?:-*[^-]){', STR(((135 - ?templateMotifSequenceMatchBeginPositionQ9UXV6490) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1501) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UXV6MF_00220_A491, 1, (STRLEN(?targetMotifMatchCigarQ9UXV6MF_00220_A491) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXV6MF_00220_A491, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1501), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UXV6MF_00220_A491, 1, (STRLEN(?targetMotifMatchCigarQ9UXV6MF_00220_A491) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXV6MF_00220_A491, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1501), '}'), '')))), '[^-]', ''))) AS ?step2502) .
BIND(((?step2502 + ?targetMotifMatchRegionMatchBeginPositionMF_00220_A492) - 1) AS ?thisPositionOn151) .
BIND(?thisPositionOn151 AS ?thisPositionOn152) .
BIND(?this AS ?pfs2t503) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn151))) AS ?pfsb148) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn152))) AS ?pfse149) .
FILTER (REGEX('[KE]', SUBSTR(?thisSequenceValue, ?thisPositionOn151, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00220a147')) AS ?annotation147) .
BIND(?this AS ?pfs146) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch508 faldo:location ?templateMotifSequenceMatchRegionQ9UXV6509 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9UXV6511 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9UXV6MF_00220_A504 .
?templateMotifSequenceMatchRegionQ9UXV6509 faldo:begin ?templateMotifSequenceMatchBeginQ9UXV6510 .
?templateMotifSequenceMatchBeginQ9UXV6510 faldo:position ?templateMotifSequenceMatchBeginPositionQ9UXV6505 ;
faldo:reference isoform:Q9UXV6-1 .
?templateMotifSequenceProfileAlignmentOperationQ9UXV6511 edam:has_input signature:MF_00220_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch512 faldo:location ?targetMotifMatchRegionMatch513 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00220_A515 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9UXV6MF_00220_A506 .
?targetMotifMatchRegionMatch513 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00220_A514 .
?targetMotifMatchRegionMatchBeginMF_00220_A514 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00220_A507 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00220_A515 edam:has_input signature:MF_00220_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UXV6MF_00220_A504, 1, (STRLEN(?templateMotifCigarQ9UXV6MF_00220_A504) - STRLEN(REPLACE(?templateMotifCigarQ9UXV6MF_00220_A504, CONCAT('^(?:-*[^-]){', STR(((164 - ?templateMotifSequenceMatchBeginPositionQ9UXV6505) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1516) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UXV6MF_00220_A506, 1, (STRLEN(?targetMotifMatchCigarQ9UXV6MF_00220_A506) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXV6MF_00220_A506, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1516), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UXV6MF_00220_A506, 1, (STRLEN(?targetMotifMatchCigarQ9UXV6MF_00220_A506) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXV6MF_00220_A506, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1516), '}'), '')))), '[^-]', ''))) AS ?step2517) .
BIND(((?step2517 + ?targetMotifMatchRegionMatchBeginPositionMF_00220_A507) - 1) AS ?thisPositionOn158) .
BIND(?thisPositionOn158 AS ?thisPositionOn159) .
BIND(?this AS ?pfs2t518) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn158))) AS ?pfsb155) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn159))) AS ?pfse156) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn158, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00220a154')) AS ?annotation154) .
BIND(?this AS ?pfs153) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch523 faldo:location ?templateMotifSequenceMatchRegionQ9UXV6524 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9UXV6526 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9UXV6MF_00220_A519 .
?templateMotifSequenceMatchRegionQ9UXV6524 faldo:begin ?templateMotifSequenceMatchBeginQ9UXV6525 .
?templateMotifSequenceMatchBeginQ9UXV6525 faldo:position ?templateMotifSequenceMatchBeginPositionQ9UXV6520 ;
faldo:reference isoform:Q9UXV6-1 .
?templateMotifSequenceProfileAlignmentOperationQ9UXV6526 edam:has_input signature:MF_00220_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch527 faldo:location ?targetMotifMatchRegionMatch528 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00220_A530 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9UXV6MF_00220_A521 .
?targetMotifMatchRegionMatch528 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00220_A529 .
?targetMotifMatchRegionMatchBeginMF_00220_A529 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00220_A522 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00220_A530 edam:has_input signature:MF_00220_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UXV6MF_00220_A519, 1, (STRLEN(?templateMotifCigarQ9UXV6MF_00220_A519) - STRLEN(REPLACE(?templateMotifCigarQ9UXV6MF_00220_A519, CONCAT('^(?:-*[^-]){', STR(((204 - ?templateMotifSequenceMatchBeginPositionQ9UXV6520) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1531) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UXV6MF_00220_A521, 1, (STRLEN(?targetMotifMatchCigarQ9UXV6MF_00220_A521) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXV6MF_00220_A521, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1531), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UXV6MF_00220_A521, 1, (STRLEN(?targetMotifMatchCigarQ9UXV6MF_00220_A521) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXV6MF_00220_A521, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1531), '}'), '')))), '[^-]', ''))) AS ?step2532) .
BIND(((?step2532 + ?targetMotifMatchRegionMatchBeginPositionMF_00220_A522) - 1) AS ?thisPositionOn165) .
BIND(?thisPositionOn165 AS ?thisPositionOn166) .
BIND(?this AS ?pfs2t533) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn165))) AS ?pfsb162) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn166))) AS ?pfse163) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn165, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00220a161')) AS ?annotation161) .
BIND(?this AS ?pfs160) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch538 faldo:location ?templateMotifSequenceMatchRegionQ9UXV6539 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9UXV6541 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9UXV6MF_00220_A534 .
?templateMotifSequenceMatchRegionQ9UXV6539 faldo:begin ?templateMotifSequenceMatchBeginQ9UXV6540 .
?templateMotifSequenceMatchBeginQ9UXV6540 faldo:position ?templateMotifSequenceMatchBeginPositionQ9UXV6535 ;
faldo:reference isoform:Q9UXV6-1 .
?templateMotifSequenceProfileAlignmentOperationQ9UXV6541 edam:has_input signature:MF_00220_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch542 faldo:location ?targetMotifMatchRegionMatch543 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00220_A545 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9UXV6MF_00220_A536 .
?targetMotifMatchRegionMatch543 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00220_A544 .
?targetMotifMatchRegionMatchBeginMF_00220_A544 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00220_A537 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00220_A545 edam:has_input signature:MF_00220_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UXV6MF_00220_A534, 1, (STRLEN(?templateMotifCigarQ9UXV6MF_00220_A534) - STRLEN(REPLACE(?templateMotifCigarQ9UXV6MF_00220_A534, CONCAT('^(?:-*[^-]){', STR(((272 - ?templateMotifSequenceMatchBeginPositionQ9UXV6535) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1546) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UXV6MF_00220_A536, 1, (STRLEN(?targetMotifMatchCigarQ9UXV6MF_00220_A536) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXV6MF_00220_A536, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1546), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UXV6MF_00220_A536, 1, (STRLEN(?targetMotifMatchCigarQ9UXV6MF_00220_A536) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXV6MF_00220_A536, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1546), '}'), '')))), '[^-]', ''))) AS ?step2547) .
BIND(((?step2547 + ?targetMotifMatchRegionMatchBeginPositionMF_00220_A537) - 1) AS ?thisPositionOn172) .
BIND(?thisPositionOn172 AS ?thisPositionOn173) .
BIND(?this AS ?pfs2t548) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn172))) AS ?pfsb169) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn173))) AS ?pfse170) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn172, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00220a168')) AS ?annotation168) .
BIND(?this AS ?pfs167) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch553 faldo:location ?templateMotifSequenceMatchRegionQ9UXV6554 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9UXV6556 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9UXV6MF_00220_A549 .
?templateMotifSequenceMatchRegionQ9UXV6554 faldo:begin ?templateMotifSequenceMatchBeginQ9UXV6555 .
?templateMotifSequenceMatchBeginQ9UXV6555 faldo:position ?templateMotifSequenceMatchBeginPositionQ9UXV6550 ;
faldo:reference isoform:Q9UXV6-1 .
?templateMotifSequenceProfileAlignmentOperationQ9UXV6556 edam:has_input signature:MF_00220_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch557 faldo:location ?targetMotifMatchRegionMatch558 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00220_A560 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9UXV6MF_00220_A551 .
?targetMotifMatchRegionMatch558 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00220_A559 .
?targetMotifMatchRegionMatchBeginMF_00220_A559 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00220_A552 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00220_A560 edam:has_input signature:MF_00220_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UXV6MF_00220_A549, 1, (STRLEN(?templateMotifCigarQ9UXV6MF_00220_A549) - STRLEN(REPLACE(?templateMotifCigarQ9UXV6MF_00220_A549, CONCAT('^(?:-*[^-]){', STR(((135 - ?templateMotifSequenceMatchBeginPositionQ9UXV6550) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1561) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UXV6MF_00220_A551, 1, (STRLEN(?targetMotifMatchCigarQ9UXV6MF_00220_A551) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXV6MF_00220_A551, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1561), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UXV6MF_00220_A551, 1, (STRLEN(?targetMotifMatchCigarQ9UXV6MF_00220_A551) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXV6MF_00220_A551, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1561), '}'), '')))), '[^-]', ''))) AS ?step2562) .
BIND(((?step2562 + ?targetMotifMatchRegionMatchBeginPositionMF_00220_A552) - 1) AS ?thisPositionOn178) .
BIND(?thisPositionOn178 AS ?thisPositionOn179) .
BIND(?this AS ?pfs2t563) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn178))) AS ?pfsb176) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn179))) AS ?pfse177) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn178, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_00220a175')) AS ?annotation175) .
BIND(?this AS ?pfs174) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch568 faldo:location ?templateMotifSequenceMatchRegionQ9UXV6569 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9UXV6571 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9UXV6MF_00220_A564 .
?templateMotifSequenceMatchRegionQ9UXV6569 faldo:begin ?templateMotifSequenceMatchBeginQ9UXV6570 .
?templateMotifSequenceMatchBeginQ9UXV6570 faldo:position ?templateMotifSequenceMatchBeginPositionQ9UXV6565 ;
faldo:reference isoform:Q9UXV6-1 .
?templateMotifSequenceProfileAlignmentOperationQ9UXV6571 edam:has_input signature:MF_00220_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch572 faldo:location ?targetMotifMatchRegionMatch573 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00220_A575 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9UXV6MF_00220_A566 .
?targetMotifMatchRegionMatch573 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00220_A574 .
?targetMotifMatchRegionMatchBeginMF_00220_A574 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00220_A567 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00220_A575 edam:has_input signature:MF_00220_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UXV6MF_00220_A564, 1, (STRLEN(?templateMotifCigarQ9UXV6MF_00220_A564) - STRLEN(REPLACE(?templateMotifCigarQ9UXV6MF_00220_A564, CONCAT('^(?:-*[^-]){', STR(((91 - ?templateMotifSequenceMatchBeginPositionQ9UXV6565) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1576) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UXV6MF_00220_A566, 1, (STRLEN(?targetMotifMatchCigarQ9UXV6MF_00220_A566) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXV6MF_00220_A566, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1576), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UXV6MF_00220_A566, 1, (STRLEN(?targetMotifMatchCigarQ9UXV6MF_00220_A566) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXV6MF_00220_A566, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1576), '}'), '')))), '[^-]', ''))) AS ?step2577) .
BIND(((?step2577 + ?targetMotifMatchRegionMatchBeginPositionMF_00220_A567) - 1) AS ?thisPositionOn186) .
BIND(?thisPositionOn186 AS ?thisPositionOn187) .
BIND(?this AS ?pfs2t578) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn186))) AS ?pfsb182) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn187))) AS ?pfse183) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn186, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_00220a181')) AS ?annotation181) .
BIND(?this AS ?pfs180) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch583 faldo:location ?templateMotifSequenceMatchRegionQ9UXV6584 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9UXV6586 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9UXV6MF_00220_A579 .
?templateMotifSequenceMatchRegionQ9UXV6584 faldo:begin ?templateMotifSequenceMatchBeginQ9UXV6585 .
?templateMotifSequenceMatchBeginQ9UXV6585 faldo:position ?templateMotifSequenceMatchBeginPositionQ9UXV6580 ;
faldo:reference isoform:Q9UXV6-1 .
?templateMotifSequenceProfileAlignmentOperationQ9UXV6586 edam:has_input signature:MF_00220_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch587 faldo:location ?targetMotifMatchRegionMatch588 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00220_A590 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9UXV6MF_00220_A581 .
?targetMotifMatchRegionMatch588 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00220_A589 .
?targetMotifMatchRegionMatchBeginMF_00220_A589 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00220_A582 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00220_A590 edam:has_input signature:MF_00220_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UXV6MF_00220_A579, 1, (STRLEN(?templateMotifCigarQ9UXV6MF_00220_A579) - STRLEN(REPLACE(?templateMotifCigarQ9UXV6MF_00220_A579, CONCAT('^(?:-*[^-]){', STR(((276 - ?templateMotifSequenceMatchBeginPositionQ9UXV6580) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1591) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UXV6MF_00220_A581, 1, (STRLEN(?targetMotifMatchCigarQ9UXV6MF_00220_A581) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXV6MF_00220_A581, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1591), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UXV6MF_00220_A581, 1, (STRLEN(?targetMotifMatchCigarQ9UXV6MF_00220_A581) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXV6MF_00220_A581, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1591), '}'), '')))), '[^-]', ''))) AS ?step2592) .
BIND(((?step2592 + ?targetMotifMatchRegionMatchBeginPositionMF_00220_A582) - 1) AS ?thisPositionOn194) .
BIND(?thisPositionOn194 AS ?thisPositionOn195) .
BIND(?this AS ?pfs2t593) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn194))) AS ?pfsb190) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn195))) AS ?pfse191) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn194, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00220a189')) AS ?annotation189) .
BIND(?this AS ?pfs188) .
}
}
"xsd:string |
