| http://purl.uniprot.org/unirules/MF_01283#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:458777 up:source unirule:MF_01283 .
_:458778 up:ecName '4.1.99.12' ;
up:fullName '3,4-dihydroxy-2-butanone 4-phosphate synthase' ;
up:shortName 'DHBP synthase' ;
rdf:type up:Structured_Name .
_:458779 up:source unirule:MF_01283 .
_:458780 up:ecName '3.5.4.25' ;
up:fullName 'GTP cyclohydrolase-2' ;
rdf:type up:Structured_Name .
_:458781 up:fullName 'GTP cyclohydrolase II' ;
rdf:type up:Structured_Name .
_:458782 up:source unirule:MF_01283 .
_:458783 up:source unirule:MF_01283 .
_:458784 up:source unirule:MF_01283 .
_:458785 up:source unirule:MF_01283 .
_:458786 up:source unirule:MF_01283 .
_:458787 up:source unirule:MF_01283 .
_:458788 up:source unirule:MF_01283 .
_:458789 up:source unirule:MF_01283 .
_:458790 up:source unirule:MF_01283 .
_:458791 up:source unirule:MF_01283 .
_:458792 up:source unirule:MF_01283 .
_:458793 up:source unirule:MF_01283 .
_:458794 up:source unirule:MF_01283 .
_:458795 up:source unirule:MF_01283 .
_:458796 up:source unirule:MF_01283 .
_:458797 up:source unirule:MF_01283 .
_:458798 up:source unirule:MF_01283 .
_:458799 up:source unirule:MF_01283 .
_:458800 up:source unirule:MF_01283 .
_:458801 up:source unirule:MF_01283 .
_:458802 up:source unirule:MF_01283 .
_:458803 up:source unirule:MF_01283 .
_:458804 up:source unirule:MF_01283 .
_:458805 up:source unirule:MF_01283 .
_:458806 up:source unirule:MF_01283 .
_:458807 up:source unirule:MF_01283 .
_:458808 up:source unirule:MF_01283 .
_:458809 up:source unirule:MF_01283 .
_:458810 up:source unirule:MF_01283 .
_:458811 up:source unirule:MF_01283 .
_:458812 up:source unirule:MF_01283 .
_:458813 up:source unirule:MF_01283 .
_:458814 up:source unirule:MF_01283 .
_:458815 up:source unirule:MF_01283 .
_:458816 up:source unirule:MF_01283 .
_:458817 up:source unirule:MF_01283 .
_:458818 up:source unirule:MF_01283 .
_:458819 up:source unirule:MF_01283 .
_:458820 up:source unirule:MF_01283 .
_:458821 up:source unirule:MF_01283 .
_:458822 up:source unirule:MF_01283 .
_:458823 up:source unirule:MF_01283 .
_:458824 up:source unirule:MF_01283 .
_:458825 up:source unirule:MF_01283 .
_:458826 up:source unirule:MF_01283 .
_:458827 up:source unirule:MF_01283 .
_:458828 up:source unirule:MF_01283 .
_:458829 up:source unirule:MF_01283 .
_:458830 up:source unirule:MF_01283 .
_:458831 up:source unirule:MF_01283 .
?this up:annotation ?annotation4 ,
?annotation5 ,
?annotation6 ,
?annotation8 ,
?annotation10 ,
?annotation11 ,
?annotation12 ,
?annotation13 ,
?annotation14 ,
?annotation15 ;
up:classifiedWith GO:0000287 ,
GO:0003935 ,
GO:0008270 ,
GO:0008686 ,
GO:0009231 ,
GO:0030145 ,
keyword:342 ,
keyword:378 ,
keyword:456 ,
keyword:460 ,
keyword:464 ,
keyword:479 ,
keyword:511 ,
keyword:547 ,
keyword:686 ,
keyword:862 ;
up:domain ?namedpart1 ,
?namedpart2 ;
up:recommendedName ?name0 .
?name0 up:fullName 'Riboflavin biosynthesis protein RibBA' ;
rdf:type up:Structured_Name .
?namedpart1 up:recommendedName _:458778 .
?namedpart2 up:alternativeName _:458781 ;
up:recommendedName _:458780 .
?gene3 skos:prefLabel 'ribBA' .
?annotation4 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate.' .
?annotation5 a up:Function_Annotation ;
rdfs:comment "Catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate." .
?annotation6 up:activity ?activity7 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity7 up:catalyticActivity ;
up:enzymeClass .
?annotation8 up:activity ?activity9 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity9 up:catalyticActivity ;
up:enzymeClass .
?annotation10 up:cofactor chebi:18420 ,
chebi:29035 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 2 divalent metal cations per subunit. Magnesium or manganese.' .
?annotation11 up:cofactor chebi:29105 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 1 zinc ion per subunit.' .
?annotation12 a up:Pathway_Annotation ;
rdfs:comment 'Cofactor biosynthesis; riboflavin biosynthesis; 2-hydroxy-3-oxobutyl phosphate from D-ribulose 5-phosphate: step 1/1.' .
?annotation13 a up:Pathway_Annotation ;
rdfs:comment 'Cofactor biosynthesis; riboflavin biosynthesis; 5-amino-6-(D-ribitylamino)uracil from GTP: step 1/4.' .
?annotation14 a up:Similarity_Annotation ;
rdfs:comment 'In the N-terminal section; belongs to the DHBP synthase family.' .
?annotation15 a up:Similarity_Annotation ;
rdfs:comment 'In the C-terminal section; belongs to the GTP cyclohydrolase II family.' .
?pfs16 up:annotation ?annotation17 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
up:ligand ?ligand20 ;
rdf:type up:Binding_Site_Annotation .
?pfsb18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?ligand20 rdfs:subClassOf chebi:37565 .
?pfs23 up:annotation ?annotation24 .
?annotation24 faldo:begin ?pfsb25 ;
faldo:end ?pfse26 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'DHBP synthase' .
?pfsb25 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfse26 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfs29 up:annotation ?annotation30 .
?annotation30 faldo:begin ?pfsb31 ;
faldo:end ?pfse32 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'GTP cyclohydrolase II' .
?pfsb31 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfse32 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfs35 up:annotation ?annotation36 .
?annotation36 faldo:begin ?pfsb37 ;
faldo:end ?pfse38 ;
up:ligand ?ligand39 ;
rdf:type up:Binding_Site_Annotation .
?pfsb37 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?pfse38 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?ligand39 rdfs:subClassOf chebi:37565 .
?pfs42 up:annotation ?annotation43 .
?annotation43 faldo:begin ?pfsb44 ;
faldo:end ?pfse45 ;
up:ligand ?ligand46 ;
rdf:type up:Binding_Site_Annotation .
?pfsb44 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?pfse45 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?ligand46 rdfs:subClassOf chebi:58121 .
?pfs49 up:annotation ?annotation50 .
?annotation50 faldo:begin ?pfsb51 ;
faldo:end ?pfse52 ;
up:ligand ?ligand53 ;
rdf:type up:Binding_Site_Annotation .
?pfsb51 faldo:position ?thisPositionOn54 ;
rdf:type faldo:ExactPosition .
?pfse52 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
?ligand53 rdfs:subClassOf chebi:58121 .
?pfs56 up:annotation ?annotation57 .
?annotation57 faldo:begin ?pfsb58 ;
faldo:end ?pfse59 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor; for GTP cyclohydrolase activity' .
?pfsb58 faldo:position ?thisPositionOn60 ;
rdf:type faldo:ExactPosition .
?pfse59 faldo:position ?thisPositionOn61 ;
rdf:type faldo:ExactPosition .
?pfs62 up:annotation ?annotation63 .
?annotation63 faldo:begin ?pfsb64 ;
faldo:end ?pfse65 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Nucleophile; for GTP cyclohydrolase activity' .
?pfsb64 faldo:position ?thisPositionOn66 ;
rdf:type faldo:ExactPosition .
?pfse65 faldo:position ?thisPositionOn67 ;
rdf:type faldo:ExactPosition .
?pfs68 up:annotation ?annotation69 .
?annotation69 faldo:begin ?pfsb70 ;
faldo:end ?pfse71 ;
up:ligand ?ligand72 ;
rdf:type up:Binding_Site_Annotation .
?pfsb70 faldo:position ?thisPositionOn73 ;
rdf:type faldo:ExactPosition .
?pfse71 faldo:position ?thisPositionOn74 ;
rdf:type faldo:ExactPosition .
?ligand72 rdfs:subClassOf chebi:18420 .
?pfs75 up:annotation ?annotation76 .
?annotation76 faldo:begin ?pfsb77 ;
faldo:end ?pfse78 ;
up:ligand ?ligand79 ;
rdf:type up:Binding_Site_Annotation .
?pfsb77 faldo:position ?thisPositionOn80 ;
rdf:type faldo:ExactPosition .
?pfse78 faldo:position ?thisPositionOn81 ;
rdf:type faldo:ExactPosition .
?ligand79 rdfs:subClassOf chebi:18420 .
?pfs82 up:annotation ?annotation83 .
?annotation83 faldo:begin ?pfsb84 ;
faldo:end ?pfse85 ;
up:ligand ?ligand86 ;
rdf:type up:Binding_Site_Annotation .
?pfsb84 faldo:position ?thisPositionOn87 ;
rdf:type faldo:ExactPosition .
?pfse85 faldo:position ?thisPositionOn88 ;
rdf:type faldo:ExactPosition .
?ligand86 rdfs:subClassOf chebi:18420 .
?pfs89 up:annotation ?annotation90 .
?annotation90 faldo:begin ?pfsb91 ;
faldo:end ?pfse92 ;
up:ligand ?ligand93 ;
rdf:type up:Binding_Site_Annotation .
?pfsb91 faldo:position ?thisPositionOn94 ;
rdf:type faldo:ExactPosition .
?pfse92 faldo:position ?thisPositionOn95 ;
rdf:type faldo:ExactPosition .
?ligand93 rdfs:subClassOf chebi:29105 .
?pfs96 up:annotation ?annotation97 .
?annotation97 faldo:begin ?pfsb98 ;
faldo:end ?pfse99 ;
up:ligand ?ligand100 ;
rdf:type up:Binding_Site_Annotation .
?pfsb98 faldo:position ?thisPositionOn101 ;
rdf:type faldo:ExactPosition .
?pfse99 faldo:position ?thisPositionOn102 ;
rdf:type faldo:ExactPosition .
?ligand100 rdfs:subClassOf chebi:29105 .
?pfs103 up:annotation ?annotation104 .
?annotation104 faldo:begin ?pfsb105 ;
faldo:end ?pfse106 ;
up:ligand ?ligand107 ;
rdf:type up:Binding_Site_Annotation .
?pfsb105 faldo:position ?thisPositionOn108 ;
rdf:type faldo:ExactPosition .
?pfse106 faldo:position ?thisPositionOn109 ;
rdf:type faldo:ExactPosition .
?ligand107 rdfs:subClassOf chebi:29105 .
?pfs110 up:annotation ?annotation111 .
?annotation111 faldo:begin ?pfsb112 ;
faldo:end ?pfse113 ;
up:ligand ?ligand114 ;
rdf:type up:Binding_Site_Annotation .
?pfsb112 faldo:position ?thisPositionOn115 ;
rdf:type faldo:ExactPosition .
?pfse113 faldo:position ?thisPositionOn116 ;
rdf:type faldo:ExactPosition .
?ligand114 rdfs:subClassOf chebi:58121 .
?pfs117 up:annotation ?annotation118 .
?annotation118 faldo:begin ?pfsb119 ;
faldo:end ?pfse120 ;
up:ligand ?ligand121 ;
rdf:type up:Binding_Site_Annotation .
?pfsb119 faldo:position ?thisPositionOn122 ;
rdf:type faldo:ExactPosition .
?pfse120 faldo:position ?thisPositionOn123 ;
rdf:type faldo:ExactPosition .
?ligand121 rdfs:subClassOf chebi:58121 .
?pfs124 up:annotation ?annotation125 .
?annotation125 faldo:begin ?pfsb126 ;
faldo:end ?pfse127 ;
up:ligand ?ligand128 ;
rdf:type up:Binding_Site_Annotation .
?pfsb126 faldo:position ?thisPositionOn129 ;
rdf:type faldo:ExactPosition .
?pfse127 faldo:position ?thisPositionOn130 ;
rdf:type faldo:ExactPosition .
?ligand128 rdfs:subClassOf chebi:37565 .
?pfs131 up:annotation ?annotation132 .
?annotation132 faldo:begin ?pfsb133 ;
faldo:end ?pfse134 ;
up:ligand ?ligand135 ;
rdf:type up:Binding_Site_Annotation .
?pfsb133 faldo:position ?thisPositionOn136 ;
rdf:type faldo:ExactPosition .
?pfse134 faldo:position ?thisPositionOn137 ;
rdf:type faldo:ExactPosition .
?ligand135 rdfs:subClassOf chebi:37565 .
?pfs138 up:annotation ?annotation139 .
?annotation139 faldo:begin ?pfsb140 ;
faldo:end ?pfse141 ;
up:ligand ?ligand142 ;
rdf:type up:Binding_Site_Annotation .
?pfsb140 faldo:position ?thisPositionOn143 ;
rdf:type faldo:ExactPosition .
?pfse141 faldo:position ?thisPositionOn144 ;
rdf:type faldo:ExactPosition .
?ligand142 rdfs:subClassOf chebi:37565 .
?pfs145 up:annotation ?annotation146 .
?annotation146 faldo:begin ?pfsb147 ;
faldo:end ?pfse148 ;
up:ligand ?ligand149 ;
rdf:type up:Binding_Site_Annotation .
?pfsb147 faldo:position ?thisPositionOn150 ;
rdf:type faldo:ExactPosition .
?pfse148 faldo:position ?thisPositionOn151 ;
rdf:type faldo:ExactPosition .
?ligand149 rdfs:subClassOf chebi:37565 .
?pfs152 up:annotation ?annotation153 .
?annotation153 faldo:begin ?pfsb154 ;
faldo:end ?pfse155 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Essential for DHBP synthase activity' .
?pfsb154 faldo:position ?thisPositionOn156 ;
rdf:type faldo:ExactPosition .
?pfse155 faldo:position ?thisPositionOn157 ;
rdf:type faldo:ExactPosition .
?pfs158 up:annotation ?annotation159 .
?annotation159 faldo:begin ?pfsb160 ;
faldo:end ?pfse161 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Essential for DHBP synthase activity' .
?pfsb160 faldo:position ?thisPositionOn162 ;
rdf:type faldo:ExactPosition .
?pfse161 faldo:position ?thisPositionOn163 ;
rdf:type faldo:ExactPosition .
_:458832 a rdf:Statement ;
up:attribution _:458777 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:458833 a rdf:Statement ;
up:attribution _:458779 ;
rdf:subject ?this ;
rdf:predicate up:domain ;
rdf:object ?namedpart1 .
_:458834 a rdf:Statement ;
up:attribution _:458782 ;
rdf:subject ?this ;
rdf:predicate up:domain ;
rdf:object ?namedpart2 .
_:458835 a rdf:Statement ;
up:attribution _:458783 ;
rdf:subject ?gene3 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene3 .
_:458836 a rdf:Statement ;
up:attribution _:458784 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:458837 a rdf:Statement ;
up:attribution _:458785 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:458838 a rdf:Statement ;
up:attribution _:458786 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:458839 a rdf:Statement ;
up:attribution _:458787 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:458840 a rdf:Statement ;
up:attribution _:458788 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:458841 a rdf:Statement ;
up:attribution _:458789 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:458842 a rdf:Statement ;
up:attribution _:458790 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:458843 a rdf:Statement ;
up:attribution _:458791 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:458844 a rdf:Statement ;
up:attribution _:458792 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:458845 a rdf:Statement ;
up:attribution _:458793 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:458846 a rdf:Statement ;
up:attribution _:458794 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:342 .
_:458847 a rdf:Statement ;
up:attribution _:458795 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:458848 a rdf:Statement ;
up:attribution _:458796 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:456 .
_:458849 a rdf:Statement ;
up:attribution _:458797 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:458850 a rdf:Statement ;
up:attribution _:458798 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:464 .
_:458851 a rdf:Statement ;
up:attribution _:458799 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:458852 a rdf:Statement ;
up:attribution _:458800 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:511 .
_:458853 a rdf:Statement ;
up:attribution _:458801 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:458854 a rdf:Statement ;
up:attribution _:458802 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:686 .
_:458855 a rdf:Statement ;
up:attribution _:458803 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:862 .
_:458856 a rdf:Statement ;
up:attribution _:458804 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000287 .
_:458857 a rdf:Statement ;
up:attribution _:458805 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003935 .
_:458858 a rdf:Statement ;
up:attribution _:458806 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008270 .
_:458859 a rdf:Statement ;
up:attribution _:458807 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008686 .
_:458860 a rdf:Statement ;
up:attribution _:458808 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0030145 .
_:458861 a rdf:Statement ;
up:attribution _:458809 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009231 .
_:458862 a rdf:Statement ;
up:source unirule:MF_01283 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:458863 a rdf:Statement ;
up:attribution _:458810 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:458864 a rdf:Statement ;
up:source unirule:MF_01283 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:458865 a rdf:Statement ;
up:attribution _:458811 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:458866 a rdf:Statement ;
up:source unirule:MF_01283 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:458867 a rdf:Statement ;
up:attribution _:458812 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:458868 a rdf:Statement ;
up:source unirule:MF_01283 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:458869 a rdf:Statement ;
up:attribution _:458813 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:458870 a rdf:Statement ;
up:source unirule:MF_01283 ;
rdf:subject ?pfs42 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:458871 a rdf:Statement ;
up:attribution _:458814 ;
rdf:subject ?pfs42 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:458872 a rdf:Statement ;
up:source unirule:MF_01283 ;
rdf:subject ?pfs49 ;
rdf:predicate up:annotation ;
rdf:object ?annotation50 .
_:458873 a rdf:Statement ;
up:attribution _:458815 ;
rdf:subject ?pfs49 ;
rdf:predicate up:annotation ;
rdf:object ?annotation50 .
_:458874 a rdf:Statement ;
up:source unirule:MF_01283 ;
rdf:subject ?pfs56 ;
rdf:predicate up:annotation ;
rdf:object ?annotation57 .
_:458875 a rdf:Statement ;
up:attribution _:458816 ;
rdf:subject ?pfs56 ;
rdf:predicate up:annotation ;
rdf:object ?annotation57 .
_:458876 a rdf:Statement ;
up:source unirule:MF_01283 ;
rdf:subject ?pfs62 ;
rdf:predicate up:annotation ;
rdf:object ?annotation63 .
_:458877 a rdf:Statement ;
up:attribution _:458817 ;
rdf:subject ?pfs62 ;
rdf:predicate up:annotation ;
rdf:object ?annotation63 .
_:458878 a rdf:Statement ;
up:source unirule:MF_01283 ;
rdf:subject ?pfs68 ;
rdf:predicate up:annotation ;
rdf:object ?annotation69 .
_:458879 a rdf:Statement ;
up:attribution _:458818 ;
rdf:subject ?pfs68 ;
rdf:predicate up:annotation ;
rdf:object ?annotation69 .
_:458880 a rdf:Statement ;
up:source unirule:MF_01283 ;
rdf:subject ?pfs75 ;
rdf:predicate up:annotation ;
rdf:object ?annotation76 .
_:458881 a rdf:Statement ;
up:attribution _:458819 ;
rdf:subject ?pfs75 ;
rdf:predicate up:annotation ;
rdf:object ?annotation76 .
_:458882 a rdf:Statement ;
up:source unirule:MF_01283 ;
rdf:subject ?pfs82 ;
rdf:predicate up:annotation ;
rdf:object ?annotation83 .
_:458883 a rdf:Statement ;
up:attribution _:458820 ;
rdf:subject ?pfs82 ;
rdf:predicate up:annotation ;
rdf:object ?annotation83 .
_:458884 a rdf:Statement ;
up:source unirule:MF_01283 ;
rdf:subject ?pfs89 ;
rdf:predicate up:annotation ;
rdf:object ?annotation90 .
_:458885 a rdf:Statement ;
up:attribution _:458821 ;
rdf:subject ?pfs89 ;
rdf:predicate up:annotation ;
rdf:object ?annotation90 .
_:458886 a rdf:Statement ;
up:source unirule:MF_01283 ;
rdf:subject ?pfs96 ;
rdf:predicate up:annotation ;
rdf:object ?annotation97 .
_:458887 a rdf:Statement ;
up:attribution _:458822 ;
rdf:subject ?pfs96 ;
rdf:predicate up:annotation ;
rdf:object ?annotation97 .
_:458888 a rdf:Statement ;
up:source unirule:MF_01283 ;
rdf:subject ?pfs103 ;
rdf:predicate up:annotation ;
rdf:object ?annotation104 .
_:458889 a rdf:Statement ;
up:attribution _:458823 ;
rdf:subject ?pfs103 ;
rdf:predicate up:annotation ;
rdf:object ?annotation104 .
_:458890 a rdf:Statement ;
up:source unirule:MF_01283 ;
rdf:subject ?pfs110 ;
rdf:predicate up:annotation ;
rdf:object ?annotation111 .
_:458891 a rdf:Statement ;
up:attribution _:458824 ;
rdf:subject ?pfs110 ;
rdf:predicate up:annotation ;
rdf:object ?annotation111 .
_:458892 a rdf:Statement ;
up:source unirule:MF_01283 ;
rdf:subject ?pfs117 ;
rdf:predicate up:annotation ;
rdf:object ?annotation118 .
_:458893 a rdf:Statement ;
up:attribution _:458825 ;
rdf:subject ?pfs117 ;
rdf:predicate up:annotation ;
rdf:object ?annotation118 .
_:458894 a rdf:Statement ;
up:source unirule:MF_01283 ;
rdf:subject ?pfs124 ;
rdf:predicate up:annotation ;
rdf:object ?annotation125 .
_:458895 a rdf:Statement ;
up:attribution _:458826 ;
rdf:subject ?pfs124 ;
rdf:predicate up:annotation ;
rdf:object ?annotation125 .
_:458896 a rdf:Statement ;
up:source unirule:MF_01283 ;
rdf:subject ?pfs131 ;
rdf:predicate up:annotation ;
rdf:object ?annotation132 .
_:458897 a rdf:Statement ;
up:attribution _:458827 ;
rdf:subject ?pfs131 ;
rdf:predicate up:annotation ;
rdf:object ?annotation132 .
_:458898 a rdf:Statement ;
up:source unirule:MF_01283 ;
rdf:subject ?pfs138 ;
rdf:predicate up:annotation ;
rdf:object ?annotation139 .
_:458899 a rdf:Statement ;
up:attribution _:458828 ;
rdf:subject ?pfs138 ;
rdf:predicate up:annotation ;
rdf:object ?annotation139 .
_:458900 a rdf:Statement ;
up:source unirule:MF_01283 ;
rdf:subject ?pfs145 ;
rdf:predicate up:annotation ;
rdf:object ?annotation146 .
_:458901 a rdf:Statement ;
up:attribution _:458829 ;
rdf:subject ?pfs145 ;
rdf:predicate up:annotation ;
rdf:object ?annotation146 .
_:458902 a rdf:Statement ;
up:source unirule:MF_01283 ;
rdf:subject ?pfs152 ;
rdf:predicate up:annotation ;
rdf:object ?annotation153 .
_:458903 a rdf:Statement ;
up:attribution _:458830 ;
rdf:subject ?pfs152 ;
rdf:predicate up:annotation ;
rdf:object ?annotation153 .
_:458904 a rdf:Statement ;
up:source unirule:MF_01283 ;
rdf:subject ?pfs158 ;
rdf:predicate up:annotation ;
rdf:object ?annotation159 .
_:458905 a rdf:Statement ;
up:attribution _:458831 ;
rdf:subject ?pfs158 ;
rdf:predicate up:annotation ;
rdf:object ?annotation159 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01283
#Rule MF_01283 Created by:? on:2007-11-16 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01283 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_01283a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01283a1')) AS ?namedpart1) .
BIND(URI(CONCAT(STR(?this), '#MF_01283a2')) AS ?namedpart2) .
BIND(URI(CONCAT(STR(?this), '#MF_01283a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01283a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01283a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01283a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_01283a10')) AS ?annotation10) .
BIND(URI(CONCAT(STR(?this), '#MF_01283a11')) AS ?annotation11) .
BIND(URI(CONCAT(STR(?this), '#MF_01283a12')) AS ?annotation12) .
BIND(URI(CONCAT(STR(?this), '#MF_01283a13')) AS ?annotation13) .
BIND(URI(CONCAT(STR(?this), '#MF_01283a14')) AS ?annotation14) .
BIND(URI(CONCAT(STR(?this), '#MF_01283a15')) AS ?annotation15) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch168 faldo:location ?templateMotifSequenceMatchRegionP17620169 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP17620171 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP17620MF_01283164 .
?templateMotifSequenceMatchRegionP17620169 faldo:begin ?templateMotifSequenceMatchBeginP17620170 .
?templateMotifSequenceMatchBeginP17620170 faldo:position ?templateMotifSequenceMatchBeginPositionP17620165 ;
faldo:reference isoform:P17620-1 .
?templateMotifSequenceProfileAlignmentOperationP17620171 edam:has_input signature:MF_01283 ;
rdf:type edam:operation_0300 .
?targetMotifMatch172 faldo:location ?targetMotifMatchRegionMatch173 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01283175 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP17620MF_01283166 .
?targetMotifMatchRegionMatch173 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01283174 .
?targetMotifMatchRegionMatchBeginMF_01283174 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01283167 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01283175 edam:has_input signature:MF_01283 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP17620MF_01283164, 1, (STRLEN(?templateMotifCigarP17620MF_01283164) - STRLEN(REPLACE(?templateMotifCigarP17620MF_01283164, CONCAT('^(?:-*[^-]){', STR(((251 - ?templateMotifSequenceMatchBeginPositionP17620165) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1176) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP17620MF_01283166, 1, (STRLEN(?targetMotifMatchCigarP17620MF_01283166) - STRLEN(REPLACE(?targetMotifMatchCigarP17620MF_01283166, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1176), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP17620MF_01283166, 1, (STRLEN(?targetMotifMatchCigarP17620MF_01283166) - STRLEN(REPLACE(?targetMotifMatchCigarP17620MF_01283166, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1176), '}'), '')))), '[^-]', ''))) AS ?step2177) .
BIND(((?step2177 + ?targetMotifMatchRegionMatchBeginPositionMF_01283167) - 1) AS ?thisPositionOn21) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP17620MF_01283164, 1, (STRLEN(?templateMotifCigarP17620MF_01283164) - STRLEN(REPLACE(?templateMotifCigarP17620MF_01283164, CONCAT('^(?:-*[^-]){', STR(((255 - ?templateMotifSequenceMatchBeginPositionP17620165) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1178) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP17620MF_01283166, 1, (STRLEN(?targetMotifMatchCigarP17620MF_01283166) - STRLEN(REPLACE(?targetMotifMatchCigarP17620MF_01283166, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1178), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP17620MF_01283166, 1, (STRLEN(?targetMotifMatchCigarP17620MF_01283166) - STRLEN(REPLACE(?targetMotifMatchCigarP17620MF_01283166, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1178), '}'), '')))), '[^-]', ''))) AS ?step2179) .
BIND(((?step2179 + ?targetMotifMatchRegionMatchBeginPositionMF_01283167) - 1) AS ?thisPositionOn22) .
BIND(?this AS ?pfs1t180) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse19) .
FILTER ((BOUND(?thisPositionOn21) && BOUND(?thisPositionOn22))) .
BIND(URI(CONCAT(STR(?this), '#MF_01283a17')) AS ?annotation17) .
BIND(?this AS ?pfs16) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch185 faldo:location ?templateMotifSequenceMatchRegionP17620186 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP17620188 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP17620MF_01283181 .
?templateMotifSequenceMatchRegionP17620186 faldo:begin ?templateMotifSequenceMatchBeginP17620187 .
?templateMotifSequenceMatchBeginP17620187 faldo:position ?templateMotifSequenceMatchBeginPositionP17620182 ;
faldo:reference isoform:P17620-1 .
?templateMotifSequenceProfileAlignmentOperationP17620188 edam:has_input signature:MF_01283 ;
rdf:type edam:operation_0300 .
?targetMotifMatch189 faldo:location ?targetMotifMatchRegionMatch190 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01283192 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP17620MF_01283183 .
?targetMotifMatchRegionMatch190 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01283191 .
?targetMotifMatchRegionMatchBeginMF_01283191 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01283184 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01283192 edam:has_input signature:MF_01283 ;
rdf:type edam:operation_0300 .
BIND(1 AS ?thisPositionOn27) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP17620MF_01283181, 1, (STRLEN(?templateMotifCigarP17620MF_01283181) - STRLEN(REPLACE(?templateMotifCigarP17620MF_01283181, CONCAT('^(?:-*[^-]){', STR(((199 - ?templateMotifSequenceMatchBeginPositionP17620182) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1193) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP17620MF_01283183, 1, (STRLEN(?targetMotifMatchCigarP17620MF_01283183) - STRLEN(REPLACE(?targetMotifMatchCigarP17620MF_01283183, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1193), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP17620MF_01283183, 1, (STRLEN(?targetMotifMatchCigarP17620MF_01283183) - STRLEN(REPLACE(?targetMotifMatchCigarP17620MF_01283183, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1193), '}'), '')))), '[^-]', ''))) AS ?step2194) .
BIND(((?step2194 + ?targetMotifMatchRegionMatchBeginPositionMF_01283184) - 1) AS ?thisPositionOn28) .
BIND(?this AS ?pfs1t195) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse26) .
FILTER ((BOUND(?thisPositionOn27) && BOUND(?thisPositionOn28))) .
BIND(URI(CONCAT(STR(?this), '#MF_01283a24')) AS ?annotation24) .
BIND(?this AS ?pfs23) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch200 faldo:location ?templateMotifSequenceMatchRegionP17620201 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP17620203 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP17620MF_01283196 .
?templateMotifSequenceMatchRegionP17620201 faldo:begin ?templateMotifSequenceMatchBeginP17620202 .
?templateMotifSequenceMatchBeginP17620202 faldo:position ?templateMotifSequenceMatchBeginPositionP17620197 ;
faldo:reference isoform:P17620-1 .
?templateMotifSequenceProfileAlignmentOperationP17620203 edam:has_input signature:MF_01283 ;
rdf:type edam:operation_0300 .
?targetMotifMatch204 faldo:location ?targetMotifMatchRegionMatch205 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01283207 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP17620MF_01283198 .
?targetMotifMatchRegionMatch205 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01283206 .
?targetMotifMatchRegionMatchBeginMF_01283206 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01283199 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01283207 edam:has_input signature:MF_01283 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP17620MF_01283196, 1, (STRLEN(?templateMotifCigarP17620MF_01283196) - STRLEN(REPLACE(?templateMotifCigarP17620MF_01283196, CONCAT('^(?:-*[^-]){', STR(((200 - ?templateMotifSequenceMatchBeginPositionP17620197) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1208) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP17620MF_01283198, 1, (STRLEN(?targetMotifMatchCigarP17620MF_01283198) - STRLEN(REPLACE(?targetMotifMatchCigarP17620MF_01283198, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1208), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP17620MF_01283198, 1, (STRLEN(?targetMotifMatchCigarP17620MF_01283198) - STRLEN(REPLACE(?targetMotifMatchCigarP17620MF_01283198, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1208), '}'), '')))), '[^-]', ''))) AS ?step2209) .
BIND(((?step2209 + ?targetMotifMatchRegionMatchBeginPositionMF_01283199) - 1) AS ?thisPositionOn33) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn34) .
BIND(?this AS ?pfs1t210) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb31) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse32) .
FILTER ((BOUND(?thisPositionOn33) && BOUND(?thisPositionOn34))) .
BIND(URI(CONCAT(STR(?this), '#MF_01283a30')) AS ?annotation30) .
BIND(?this AS ?pfs29) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch215 faldo:location ?templateMotifSequenceMatchRegionP17620216 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP17620218 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP17620MF_01283211 .
?templateMotifSequenceMatchRegionP17620216 faldo:begin ?templateMotifSequenceMatchBeginP17620217 .
?templateMotifSequenceMatchBeginP17620217 faldo:position ?templateMotifSequenceMatchBeginPositionP17620212 ;
faldo:reference isoform:P17620-1 .
?templateMotifSequenceProfileAlignmentOperationP17620218 edam:has_input signature:MF_01283 ;
rdf:type edam:operation_0300 .
?targetMotifMatch219 faldo:location ?targetMotifMatchRegionMatch220 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01283222 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP17620MF_01283213 .
?targetMotifMatchRegionMatch220 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01283221 .
?targetMotifMatchRegionMatchBeginMF_01283221 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01283214 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01283222 edam:has_input signature:MF_01283 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP17620MF_01283211, 1, (STRLEN(?templateMotifCigarP17620MF_01283211) - STRLEN(REPLACE(?templateMotifCigarP17620MF_01283211, CONCAT('^(?:-*[^-]){', STR(((294 - ?templateMotifSequenceMatchBeginPositionP17620212) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1223) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP17620MF_01283213, 1, (STRLEN(?targetMotifMatchCigarP17620MF_01283213) - STRLEN(REPLACE(?targetMotifMatchCigarP17620MF_01283213, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1223), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP17620MF_01283213, 1, (STRLEN(?targetMotifMatchCigarP17620MF_01283213) - STRLEN(REPLACE(?targetMotifMatchCigarP17620MF_01283213, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1223), '}'), '')))), '[^-]', ''))) AS ?step2224) .
BIND(((?step2224 + ?targetMotifMatchRegionMatchBeginPositionMF_01283214) - 1) AS ?thisPositionOn40) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP17620MF_01283211, 1, (STRLEN(?templateMotifCigarP17620MF_01283211) - STRLEN(REPLACE(?templateMotifCigarP17620MF_01283211, CONCAT('^(?:-*[^-]){', STR(((296 - ?templateMotifSequenceMatchBeginPositionP17620212) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1225) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP17620MF_01283213, 1, (STRLEN(?targetMotifMatchCigarP17620MF_01283213) - STRLEN(REPLACE(?targetMotifMatchCigarP17620MF_01283213, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1225), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP17620MF_01283213, 1, (STRLEN(?targetMotifMatchCigarP17620MF_01283213) - STRLEN(REPLACE(?targetMotifMatchCigarP17620MF_01283213, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1225), '}'), '')))), '[^-]', ''))) AS ?step2226) .
BIND(((?step2226 + ?targetMotifMatchRegionMatchBeginPositionMF_01283214) - 1) AS ?thisPositionOn41) .
BIND(?this AS ?pfs1t227) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfsb37) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfse38) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn40, (?thisPositionOn41 - ?thisPositionOn40)) = 'EGR')) .
BIND(URI(CONCAT(STR(?this), '#MF_01283a36')) AS ?annotation36) .
BIND(?this AS ?pfs35) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch232 faldo:location ?templateMotifSequenceMatchRegionP17620233 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP17620235 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP17620MF_01283228 .
?templateMotifSequenceMatchRegionP17620233 faldo:begin ?templateMotifSequenceMatchBeginP17620234 .
?templateMotifSequenceMatchBeginP17620234 faldo:position ?templateMotifSequenceMatchBeginPositionP17620229 ;
faldo:reference isoform:P17620-1 .
?templateMotifSequenceProfileAlignmentOperationP17620235 edam:has_input signature:MF_01283 ;
rdf:type edam:operation_0300 .
?targetMotifMatch236 faldo:location ?targetMotifMatchRegionMatch237 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01283239 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP17620MF_01283230 .
?targetMotifMatchRegionMatch237 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01283238 .
?targetMotifMatchRegionMatchBeginMF_01283238 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01283231 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01283239 edam:has_input signature:MF_01283 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP17620MF_01283228, 1, (STRLEN(?templateMotifCigarP17620MF_01283228) - STRLEN(REPLACE(?templateMotifCigarP17620MF_01283228, CONCAT('^(?:-*[^-]){', STR(((26 - ?templateMotifSequenceMatchBeginPositionP17620229) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1240) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP17620MF_01283230, 1, (STRLEN(?targetMotifMatchCigarP17620MF_01283230) - STRLEN(REPLACE(?targetMotifMatchCigarP17620MF_01283230, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1240), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP17620MF_01283230, 1, (STRLEN(?targetMotifMatchCigarP17620MF_01283230) - STRLEN(REPLACE(?targetMotifMatchCigarP17620MF_01283230, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1240), '}'), '')))), '[^-]', ''))) AS ?step2241) .
BIND(((?step2241 + ?targetMotifMatchRegionMatchBeginPositionMF_01283231) - 1) AS ?thisPositionOn47) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP17620MF_01283228, 1, (STRLEN(?templateMotifCigarP17620MF_01283228) - STRLEN(REPLACE(?templateMotifCigarP17620MF_01283228, CONCAT('^(?:-*[^-]){', STR(((27 - ?templateMotifSequenceMatchBeginPositionP17620229) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1242) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP17620MF_01283230, 1, (STRLEN(?targetMotifMatchCigarP17620MF_01283230) - STRLEN(REPLACE(?targetMotifMatchCigarP17620MF_01283230, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1242), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP17620MF_01283230, 1, (STRLEN(?targetMotifMatchCigarP17620MF_01283230) - STRLEN(REPLACE(?targetMotifMatchCigarP17620MF_01283230, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1242), '}'), '')))), '[^-]', ''))) AS ?step2243) .
BIND(((?step2243 + ?targetMotifMatchRegionMatchBeginPositionMF_01283231) - 1) AS ?thisPositionOn48) .
BIND(?this AS ?pfs1t244) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfsb44) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfse45) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn47, (?thisPositionOn48 - ?thisPositionOn47)) = 'RE')) .
BIND(URI(CONCAT(STR(?this), '#MF_01283a43')) AS ?annotation43) .
BIND(?this AS ?pfs42) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch249 faldo:location ?templateMotifSequenceMatchRegionP17620250 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP17620252 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP17620MF_01283245 .
?templateMotifSequenceMatchRegionP17620250 faldo:begin ?templateMotifSequenceMatchBeginP17620251 .
?templateMotifSequenceMatchBeginP17620251 faldo:position ?templateMotifSequenceMatchBeginPositionP17620246 ;
faldo:reference isoform:P17620-1 .
?templateMotifSequenceProfileAlignmentOperationP17620252 edam:has_input signature:MF_01283 ;
rdf:type edam:operation_0300 .
?targetMotifMatch253 faldo:location ?targetMotifMatchRegionMatch254 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01283256 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP17620MF_01283247 .
?targetMotifMatchRegionMatch254 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01283255 .
?targetMotifMatchRegionMatchBeginMF_01283255 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01283248 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01283256 edam:has_input signature:MF_01283 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP17620MF_01283245, 1, (STRLEN(?templateMotifCigarP17620MF_01283245) - STRLEN(REPLACE(?templateMotifCigarP17620MF_01283245, CONCAT('^(?:-*[^-]){', STR(((138 - ?templateMotifSequenceMatchBeginPositionP17620246) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1257) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP17620MF_01283247, 1, (STRLEN(?targetMotifMatchCigarP17620MF_01283247) - STRLEN(REPLACE(?targetMotifMatchCigarP17620MF_01283247, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1257), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP17620MF_01283247, 1, (STRLEN(?targetMotifMatchCigarP17620MF_01283247) - STRLEN(REPLACE(?targetMotifMatchCigarP17620MF_01283247, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1257), '}'), '')))), '[^-]', ''))) AS ?step2258) .
BIND(((?step2258 + ?targetMotifMatchRegionMatchBeginPositionMF_01283248) - 1) AS ?thisPositionOn54) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP17620MF_01283245, 1, (STRLEN(?templateMotifCigarP17620MF_01283245) - STRLEN(REPLACE(?templateMotifCigarP17620MF_01283245, CONCAT('^(?:-*[^-]){', STR(((142 - ?templateMotifSequenceMatchBeginPositionP17620246) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1259) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP17620MF_01283247, 1, (STRLEN(?targetMotifMatchCigarP17620MF_01283247) - STRLEN(REPLACE(?targetMotifMatchCigarP17620MF_01283247, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1259), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP17620MF_01283247, 1, (STRLEN(?targetMotifMatchCigarP17620MF_01283247) - STRLEN(REPLACE(?targetMotifMatchCigarP17620MF_01283247, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1259), '}'), '')))), '[^-]', ''))) AS ?step2260) .
BIND(((?step2260 + ?targetMotifMatchRegionMatchBeginPositionMF_01283248) - 1) AS ?thisPositionOn55) .
BIND(?this AS ?pfs1t261) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfsb51) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfse52) .
FILTER (REGEX('R[ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX]HT', SUBSTR(?thisSequenceValue, ?thisPositionOn54, (?thisPositionOn55 - ?thisPositionOn54)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01283a50')) AS ?annotation50) .
BIND(?this AS ?pfs49) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch266 faldo:location ?templateMotifSequenceMatchRegionP17620267 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP17620269 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP17620MF_01283262 .
?templateMotifSequenceMatchRegionP17620267 faldo:begin ?templateMotifSequenceMatchBeginP17620268 .
?templateMotifSequenceMatchBeginP17620268 faldo:position ?templateMotifSequenceMatchBeginPositionP17620263 ;
faldo:reference isoform:P17620-1 .
?templateMotifSequenceProfileAlignmentOperationP17620269 edam:has_input signature:MF_01283 ;
rdf:type edam:operation_0300 .
?targetMotifMatch270 faldo:location ?targetMotifMatchRegionMatch271 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01283273 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP17620MF_01283264 .
?targetMotifMatchRegionMatch271 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01283272 .
?targetMotifMatchRegionMatchBeginMF_01283272 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01283265 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01283273 edam:has_input signature:MF_01283 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP17620MF_01283262, 1, (STRLEN(?templateMotifCigarP17620MF_01283262) - STRLEN(REPLACE(?templateMotifCigarP17620MF_01283262, CONCAT('^(?:-*[^-]){', STR(((328 - ?templateMotifSequenceMatchBeginPositionP17620263) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1274) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP17620MF_01283264, 1, (STRLEN(?targetMotifMatchCigarP17620MF_01283264) - STRLEN(REPLACE(?targetMotifMatchCigarP17620MF_01283264, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1274), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP17620MF_01283264, 1, (STRLEN(?targetMotifMatchCigarP17620MF_01283264) - STRLEN(REPLACE(?targetMotifMatchCigarP17620MF_01283264, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1274), '}'), '')))), '[^-]', ''))) AS ?step2275) .
BIND(((?step2275 + ?targetMotifMatchRegionMatchBeginPositionMF_01283265) - 1) AS ?thisPositionOn60) .
BIND(?thisPositionOn60 AS ?thisPositionOn61) .
BIND(?this AS ?pfs1t276) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfsb58) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfse59) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn60, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01283a57')) AS ?annotation57) .
BIND(?this AS ?pfs56) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch281 faldo:location ?templateMotifSequenceMatchRegionP17620282 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP17620284 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP17620MF_01283277 .
?templateMotifSequenceMatchRegionP17620282 faldo:begin ?templateMotifSequenceMatchBeginP17620283 .
?templateMotifSequenceMatchBeginP17620283 faldo:position ?templateMotifSequenceMatchBeginPositionP17620278 ;
faldo:reference isoform:P17620-1 .
?templateMotifSequenceProfileAlignmentOperationP17620284 edam:has_input signature:MF_01283 ;
rdf:type edam:operation_0300 .
?targetMotifMatch285 faldo:location ?targetMotifMatchRegionMatch286 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01283288 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP17620MF_01283279 .
?targetMotifMatchRegionMatch286 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01283287 .
?targetMotifMatchRegionMatchBeginMF_01283287 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01283280 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01283288 edam:has_input signature:MF_01283 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP17620MF_01283277, 1, (STRLEN(?templateMotifCigarP17620MF_01283277) - STRLEN(REPLACE(?templateMotifCigarP17620MF_01283277, CONCAT('^(?:-*[^-]){', STR(((330 - ?templateMotifSequenceMatchBeginPositionP17620278) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1289) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP17620MF_01283279, 1, (STRLEN(?targetMotifMatchCigarP17620MF_01283279) - STRLEN(REPLACE(?targetMotifMatchCigarP17620MF_01283279, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1289), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP17620MF_01283279, 1, (STRLEN(?targetMotifMatchCigarP17620MF_01283279) - STRLEN(REPLACE(?targetMotifMatchCigarP17620MF_01283279, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1289), '}'), '')))), '[^-]', ''))) AS ?step2290) .
BIND(((?step2290 + ?targetMotifMatchRegionMatchBeginPositionMF_01283280) - 1) AS ?thisPositionOn66) .
BIND(?thisPositionOn66 AS ?thisPositionOn67) .
BIND(?this AS ?pfs1t291) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfsb64) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfse65) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn66, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01283a63')) AS ?annotation63) .
BIND(?this AS ?pfs62) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch296 faldo:location ?templateMotifSequenceMatchRegionP17620297 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP17620299 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP17620MF_01283292 .
?templateMotifSequenceMatchRegionP17620297 faldo:begin ?templateMotifSequenceMatchBeginP17620298 .
?templateMotifSequenceMatchBeginP17620298 faldo:position ?templateMotifSequenceMatchBeginPositionP17620293 ;
faldo:reference isoform:P17620-1 .
?templateMotifSequenceProfileAlignmentOperationP17620299 edam:has_input signature:MF_01283 ;
rdf:type edam:operation_0300 .
?targetMotifMatch300 faldo:location ?targetMotifMatchRegionMatch301 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01283303 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP17620MF_01283294 .
?targetMotifMatchRegionMatch301 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01283302 .
?targetMotifMatchRegionMatchBeginMF_01283302 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01283295 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01283303 edam:has_input signature:MF_01283 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP17620MF_01283292, 1, (STRLEN(?templateMotifCigarP17620MF_01283292) - STRLEN(REPLACE(?templateMotifCigarP17620MF_01283292, CONCAT('^(?:-*[^-]){', STR(((27 - ?templateMotifSequenceMatchBeginPositionP17620293) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1304) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP17620MF_01283294, 1, (STRLEN(?targetMotifMatchCigarP17620MF_01283294) - STRLEN(REPLACE(?targetMotifMatchCigarP17620MF_01283294, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1304), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP17620MF_01283294, 1, (STRLEN(?targetMotifMatchCigarP17620MF_01283294) - STRLEN(REPLACE(?targetMotifMatchCigarP17620MF_01283294, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1304), '}'), '')))), '[^-]', ''))) AS ?step2305) .
BIND(((?step2305 + ?targetMotifMatchRegionMatchBeginPositionMF_01283295) - 1) AS ?thisPositionOn73) .
BIND(?thisPositionOn73 AS ?thisPositionOn74) .
BIND(?this AS ?pfs1t306) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfsb70) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn74))) AS ?pfse71) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn73, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01283a69')) AS ?annotation69) .
BIND(?this AS ?pfs68) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch311 faldo:location ?templateMotifSequenceMatchRegionP17620312 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP17620314 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP17620MF_01283307 .
?templateMotifSequenceMatchRegionP17620312 faldo:begin ?templateMotifSequenceMatchBeginP17620313 .
?templateMotifSequenceMatchBeginP17620313 faldo:position ?templateMotifSequenceMatchBeginPositionP17620308 ;
faldo:reference isoform:P17620-1 .
?templateMotifSequenceProfileAlignmentOperationP17620314 edam:has_input signature:MF_01283 ;
rdf:type edam:operation_0300 .
?targetMotifMatch315 faldo:location ?targetMotifMatchRegionMatch316 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01283318 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP17620MF_01283309 .
?targetMotifMatchRegionMatch316 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01283317 .
?targetMotifMatchRegionMatchBeginMF_01283317 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01283310 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01283318 edam:has_input signature:MF_01283 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP17620MF_01283307, 1, (STRLEN(?templateMotifCigarP17620MF_01283307) - STRLEN(REPLACE(?templateMotifCigarP17620MF_01283307, CONCAT('^(?:-*[^-]){', STR(((27 - ?templateMotifSequenceMatchBeginPositionP17620308) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1319) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP17620MF_01283309, 1, (STRLEN(?targetMotifMatchCigarP17620MF_01283309) - STRLEN(REPLACE(?targetMotifMatchCigarP17620MF_01283309, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1319), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP17620MF_01283309, 1, (STRLEN(?targetMotifMatchCigarP17620MF_01283309) - STRLEN(REPLACE(?targetMotifMatchCigarP17620MF_01283309, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1319), '}'), '')))), '[^-]', ''))) AS ?step2320) .
BIND(((?step2320 + ?targetMotifMatchRegionMatchBeginPositionMF_01283310) - 1) AS ?thisPositionOn80) .
BIND(?thisPositionOn80 AS ?thisPositionOn81) .
BIND(?this AS ?pfs1t321) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn80))) AS ?pfsb77) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn81))) AS ?pfse78) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn80, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01283a76')) AS ?annotation76) .
BIND(?this AS ?pfs75) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch326 faldo:location ?templateMotifSequenceMatchRegionP17620327 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP17620329 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP17620MF_01283322 .
?templateMotifSequenceMatchRegionP17620327 faldo:begin ?templateMotifSequenceMatchBeginP17620328 .
?templateMotifSequenceMatchBeginP17620328 faldo:position ?templateMotifSequenceMatchBeginPositionP17620323 ;
faldo:reference isoform:P17620-1 .
?templateMotifSequenceProfileAlignmentOperationP17620329 edam:has_input signature:MF_01283 ;
rdf:type edam:operation_0300 .
?targetMotifMatch330 faldo:location ?targetMotifMatchRegionMatch331 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01283333 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP17620MF_01283324 .
?targetMotifMatchRegionMatch331 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01283332 .
?targetMotifMatchRegionMatchBeginMF_01283332 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01283325 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01283333 edam:has_input signature:MF_01283 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP17620MF_01283322, 1, (STRLEN(?templateMotifCigarP17620MF_01283322) - STRLEN(REPLACE(?templateMotifCigarP17620MF_01283322, CONCAT('^(?:-*[^-]){', STR(((141 - ?templateMotifSequenceMatchBeginPositionP17620323) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1334) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP17620MF_01283324, 1, (STRLEN(?targetMotifMatchCigarP17620MF_01283324) - STRLEN(REPLACE(?targetMotifMatchCigarP17620MF_01283324, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1334), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP17620MF_01283324, 1, (STRLEN(?targetMotifMatchCigarP17620MF_01283324) - STRLEN(REPLACE(?targetMotifMatchCigarP17620MF_01283324, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1334), '}'), '')))), '[^-]', ''))) AS ?step2335) .
BIND(((?step2335 + ?targetMotifMatchRegionMatchBeginPositionMF_01283325) - 1) AS ?thisPositionOn87) .
BIND(?thisPositionOn87 AS ?thisPositionOn88) .
BIND(?this AS ?pfs1t336) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn87))) AS ?pfsb84) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn88))) AS ?pfse85) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn87, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01283a83')) AS ?annotation83) .
BIND(?this AS ?pfs82) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch341 faldo:location ?templateMotifSequenceMatchRegionP17620342 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP17620344 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP17620MF_01283337 .
?templateMotifSequenceMatchRegionP17620342 faldo:begin ?templateMotifSequenceMatchBeginP17620343 .
?templateMotifSequenceMatchBeginP17620343 faldo:position ?templateMotifSequenceMatchBeginPositionP17620338 ;
faldo:reference isoform:P17620-1 .
?templateMotifSequenceProfileAlignmentOperationP17620344 edam:has_input signature:MF_01283 ;
rdf:type edam:operation_0300 .
?targetMotifMatch345 faldo:location ?targetMotifMatchRegionMatch346 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01283348 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP17620MF_01283339 .
?targetMotifMatchRegionMatch346 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01283347 .
?targetMotifMatchRegionMatchBeginMF_01283347 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01283340 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01283348 edam:has_input signature:MF_01283 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP17620MF_01283337, 1, (STRLEN(?templateMotifCigarP17620MF_01283337) - STRLEN(REPLACE(?templateMotifCigarP17620MF_01283337, CONCAT('^(?:-*[^-]){', STR(((256 - ?templateMotifSequenceMatchBeginPositionP17620338) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1349) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP17620MF_01283339, 1, (STRLEN(?targetMotifMatchCigarP17620MF_01283339) - STRLEN(REPLACE(?targetMotifMatchCigarP17620MF_01283339, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1349), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP17620MF_01283339, 1, (STRLEN(?targetMotifMatchCigarP17620MF_01283339) - STRLEN(REPLACE(?targetMotifMatchCigarP17620MF_01283339, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1349), '}'), '')))), '[^-]', ''))) AS ?step2350) .
BIND(((?step2350 + ?targetMotifMatchRegionMatchBeginPositionMF_01283340) - 1) AS ?thisPositionOn94) .
BIND(?thisPositionOn94 AS ?thisPositionOn95) .
BIND(?this AS ?pfs1t351) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn94))) AS ?pfsb91) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn95))) AS ?pfse92) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn94, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_01283a90')) AS ?annotation90) .
BIND(?this AS ?pfs89) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch356 faldo:location ?templateMotifSequenceMatchRegionP17620357 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP17620359 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP17620MF_01283352 .
?templateMotifSequenceMatchRegionP17620357 faldo:begin ?templateMotifSequenceMatchBeginP17620358 .
?templateMotifSequenceMatchBeginP17620358 faldo:position ?templateMotifSequenceMatchBeginPositionP17620353 ;
faldo:reference isoform:P17620-1 .
?templateMotifSequenceProfileAlignmentOperationP17620359 edam:has_input signature:MF_01283 ;
rdf:type edam:operation_0300 .
?targetMotifMatch360 faldo:location ?targetMotifMatchRegionMatch361 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01283363 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP17620MF_01283354 .
?targetMotifMatchRegionMatch361 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01283362 .
?targetMotifMatchRegionMatchBeginMF_01283362 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01283355 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01283363 edam:has_input signature:MF_01283 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP17620MF_01283352, 1, (STRLEN(?templateMotifCigarP17620MF_01283352) - STRLEN(REPLACE(?templateMotifCigarP17620MF_01283352, CONCAT('^(?:-*[^-]){', STR(((267 - ?templateMotifSequenceMatchBeginPositionP17620353) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1364) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP17620MF_01283354, 1, (STRLEN(?targetMotifMatchCigarP17620MF_01283354) - STRLEN(REPLACE(?targetMotifMatchCigarP17620MF_01283354, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1364), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP17620MF_01283354, 1, (STRLEN(?targetMotifMatchCigarP17620MF_01283354) - STRLEN(REPLACE(?targetMotifMatchCigarP17620MF_01283354, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1364), '}'), '')))), '[^-]', ''))) AS ?step2365) .
BIND(((?step2365 + ?targetMotifMatchRegionMatchBeginPositionMF_01283355) - 1) AS ?thisPositionOn101) .
BIND(?thisPositionOn101 AS ?thisPositionOn102) .
BIND(?this AS ?pfs1t366) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn101))) AS ?pfsb98) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn102))) AS ?pfse99) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn101, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_01283a97')) AS ?annotation97) .
BIND(?this AS ?pfs96) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch371 faldo:location ?templateMotifSequenceMatchRegionP17620372 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP17620374 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP17620MF_01283367 .
?templateMotifSequenceMatchRegionP17620372 faldo:begin ?templateMotifSequenceMatchBeginP17620373 .
?templateMotifSequenceMatchBeginP17620373 faldo:position ?templateMotifSequenceMatchBeginPositionP17620368 ;
faldo:reference isoform:P17620-1 .
?templateMotifSequenceProfileAlignmentOperationP17620374 edam:has_input signature:MF_01283 ;
rdf:type edam:operation_0300 .
?targetMotifMatch375 faldo:location ?targetMotifMatchRegionMatch376 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01283378 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP17620MF_01283369 .
?targetMotifMatchRegionMatch376 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01283377 .
?targetMotifMatchRegionMatchBeginMF_01283377 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01283370 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01283378 edam:has_input signature:MF_01283 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP17620MF_01283367, 1, (STRLEN(?templateMotifCigarP17620MF_01283367) - STRLEN(REPLACE(?templateMotifCigarP17620MF_01283367, CONCAT('^(?:-*[^-]){', STR(((269 - ?templateMotifSequenceMatchBeginPositionP17620368) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1379) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP17620MF_01283369, 1, (STRLEN(?targetMotifMatchCigarP17620MF_01283369) - STRLEN(REPLACE(?targetMotifMatchCigarP17620MF_01283369, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1379), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP17620MF_01283369, 1, (STRLEN(?targetMotifMatchCigarP17620MF_01283369) - STRLEN(REPLACE(?targetMotifMatchCigarP17620MF_01283369, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1379), '}'), '')))), '[^-]', ''))) AS ?step2380) .
BIND(((?step2380 + ?targetMotifMatchRegionMatchBeginPositionMF_01283370) - 1) AS ?thisPositionOn108) .
BIND(?thisPositionOn108 AS ?thisPositionOn109) .
BIND(?this AS ?pfs1t381) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn108))) AS ?pfsb105) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn109))) AS ?pfse106) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn108, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_01283a104')) AS ?annotation104) .
BIND(?this AS ?pfs103) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch386 faldo:location ?templateMotifSequenceMatchRegionP17620387 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP17620389 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP17620MF_01283382 .
?templateMotifSequenceMatchRegionP17620387 faldo:begin ?templateMotifSequenceMatchBeginP17620388 .
?templateMotifSequenceMatchBeginP17620388 faldo:position ?templateMotifSequenceMatchBeginPositionP17620383 ;
faldo:reference isoform:P17620-1 .
?templateMotifSequenceProfileAlignmentOperationP17620389 edam:has_input signature:MF_01283 ;
rdf:type edam:operation_0300 .
?targetMotifMatch390 faldo:location ?targetMotifMatchRegionMatch391 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01283393 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP17620MF_01283384 .
?targetMotifMatchRegionMatch391 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01283392 .
?targetMotifMatchRegionMatchBeginMF_01283392 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01283385 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01283393 edam:has_input signature:MF_01283 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP17620MF_01283382, 1, (STRLEN(?templateMotifCigarP17620MF_01283382) - STRLEN(REPLACE(?templateMotifCigarP17620MF_01283382, CONCAT('^(?:-*[^-]){', STR(((31 - ?templateMotifSequenceMatchBeginPositionP17620383) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1394) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP17620MF_01283384, 1, (STRLEN(?targetMotifMatchCigarP17620MF_01283384) - STRLEN(REPLACE(?targetMotifMatchCigarP17620MF_01283384, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1394), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP17620MF_01283384, 1, (STRLEN(?targetMotifMatchCigarP17620MF_01283384) - STRLEN(REPLACE(?targetMotifMatchCigarP17620MF_01283384, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1394), '}'), '')))), '[^-]', ''))) AS ?step2395) .
BIND(((?step2395 + ?targetMotifMatchRegionMatchBeginPositionMF_01283385) - 1) AS ?thisPositionOn115) .
BIND(?thisPositionOn115 AS ?thisPositionOn116) .
BIND(?this AS ?pfs1t396) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn115))) AS ?pfsb112) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn116))) AS ?pfse113) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn115, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01283a111')) AS ?annotation111) .
BIND(?this AS ?pfs110) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch401 faldo:location ?templateMotifSequenceMatchRegionP17620402 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP17620404 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP17620MF_01283397 .
?templateMotifSequenceMatchRegionP17620402 faldo:begin ?templateMotifSequenceMatchBeginP17620403 .
?templateMotifSequenceMatchBeginP17620403 faldo:position ?templateMotifSequenceMatchBeginPositionP17620398 ;
faldo:reference isoform:P17620-1 .
?templateMotifSequenceProfileAlignmentOperationP17620404 edam:has_input signature:MF_01283 ;
rdf:type edam:operation_0300 .
?targetMotifMatch405 faldo:location ?targetMotifMatchRegionMatch406 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01283408 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP17620MF_01283399 .
?targetMotifMatchRegionMatch406 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01283407 .
?targetMotifMatchRegionMatchBeginMF_01283407 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01283400 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01283408 edam:has_input signature:MF_01283 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP17620MF_01283397, 1, (STRLEN(?templateMotifCigarP17620MF_01283397) - STRLEN(REPLACE(?templateMotifCigarP17620MF_01283397, CONCAT('^(?:-*[^-]){', STR(((162 - ?templateMotifSequenceMatchBeginPositionP17620398) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1409) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP17620MF_01283399, 1, (STRLEN(?targetMotifMatchCigarP17620MF_01283399) - STRLEN(REPLACE(?targetMotifMatchCigarP17620MF_01283399, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1409), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP17620MF_01283399, 1, (STRLEN(?targetMotifMatchCigarP17620MF_01283399) - STRLEN(REPLACE(?targetMotifMatchCigarP17620MF_01283399, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1409), '}'), '')))), '[^-]', ''))) AS ?step2410) .
BIND(((?step2410 + ?targetMotifMatchRegionMatchBeginPositionMF_01283400) - 1) AS ?thisPositionOn122) .
BIND(?thisPositionOn122 AS ?thisPositionOn123) .
BIND(?this AS ?pfs1t411) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn122))) AS ?pfsb119) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn123))) AS ?pfse120) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn122, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01283a118')) AS ?annotation118) .
BIND(?this AS ?pfs117) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch416 faldo:location ?templateMotifSequenceMatchRegionP17620417 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP17620419 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP17620MF_01283412 .
?templateMotifSequenceMatchRegionP17620417 faldo:begin ?templateMotifSequenceMatchBeginP17620418 .
?templateMotifSequenceMatchBeginP17620418 faldo:position ?templateMotifSequenceMatchBeginPositionP17620413 ;
faldo:reference isoform:P17620-1 .
?templateMotifSequenceProfileAlignmentOperationP17620419 edam:has_input signature:MF_01283 ;
rdf:type edam:operation_0300 .
?targetMotifMatch420 faldo:location ?targetMotifMatchRegionMatch421 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01283423 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP17620MF_01283414 .
?targetMotifMatchRegionMatch421 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01283422 .
?targetMotifMatchRegionMatchBeginMF_01283422 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01283415 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01283423 edam:has_input signature:MF_01283 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP17620MF_01283412, 1, (STRLEN(?templateMotifCigarP17620MF_01283412) - STRLEN(REPLACE(?templateMotifCigarP17620MF_01283412, CONCAT('^(?:-*[^-]){', STR(((272 - ?templateMotifSequenceMatchBeginPositionP17620413) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1424) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP17620MF_01283414, 1, (STRLEN(?targetMotifMatchCigarP17620MF_01283414) - STRLEN(REPLACE(?targetMotifMatchCigarP17620MF_01283414, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1424), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP17620MF_01283414, 1, (STRLEN(?targetMotifMatchCigarP17620MF_01283414) - STRLEN(REPLACE(?targetMotifMatchCigarP17620MF_01283414, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1424), '}'), '')))), '[^-]', ''))) AS ?step2425) .
BIND(((?step2425 + ?targetMotifMatchRegionMatchBeginPositionMF_01283415) - 1) AS ?thisPositionOn129) .
BIND(?thisPositionOn129 AS ?thisPositionOn130) .
BIND(?this AS ?pfs1t426) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn129))) AS ?pfsb126) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn130))) AS ?pfse127) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn129, 1) = 'Q')) .
BIND(URI(CONCAT(STR(?this), '#MF_01283a125')) AS ?annotation125) .
BIND(?this AS ?pfs124) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch431 faldo:location ?templateMotifSequenceMatchRegionP17620432 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP17620434 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP17620MF_01283427 .
?templateMotifSequenceMatchRegionP17620432 faldo:begin ?templateMotifSequenceMatchBeginP17620433 .
?templateMotifSequenceMatchBeginP17620433 faldo:position ?templateMotifSequenceMatchBeginPositionP17620428 ;
faldo:reference isoform:P17620-1 .
?templateMotifSequenceProfileAlignmentOperationP17620434 edam:has_input signature:MF_01283 ;
rdf:type edam:operation_0300 .
?targetMotifMatch435 faldo:location ?targetMotifMatchRegionMatch436 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01283438 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP17620MF_01283429 .
?targetMotifMatchRegionMatch436 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01283437 .
?targetMotifMatchRegionMatchBeginMF_01283437 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01283430 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01283438 edam:has_input signature:MF_01283 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP17620MF_01283427, 1, (STRLEN(?templateMotifCigarP17620MF_01283427) - STRLEN(REPLACE(?templateMotifCigarP17620MF_01283427, CONCAT('^(?:-*[^-]){', STR(((316 - ?templateMotifSequenceMatchBeginPositionP17620428) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1439) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP17620MF_01283429, 1, (STRLEN(?targetMotifMatchCigarP17620MF_01283429) - STRLEN(REPLACE(?targetMotifMatchCigarP17620MF_01283429, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1439), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP17620MF_01283429, 1, (STRLEN(?targetMotifMatchCigarP17620MF_01283429) - STRLEN(REPLACE(?targetMotifMatchCigarP17620MF_01283429, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1439), '}'), '')))), '[^-]', ''))) AS ?step2440) .
BIND(((?step2440 + ?targetMotifMatchRegionMatchBeginPositionMF_01283430) - 1) AS ?thisPositionOn136) .
BIND(?thisPositionOn136 AS ?thisPositionOn137) .
BIND(?this AS ?pfs1t441) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn136))) AS ?pfsb133) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn137))) AS ?pfse134) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn136, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_01283a132')) AS ?annotation132) .
BIND(?this AS ?pfs131) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch446 faldo:location ?templateMotifSequenceMatchRegionP17620447 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP17620449 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP17620MF_01283442 .
?templateMotifSequenceMatchRegionP17620447 faldo:begin ?templateMotifSequenceMatchBeginP17620448 .
?templateMotifSequenceMatchBeginP17620448 faldo:position ?templateMotifSequenceMatchBeginPositionP17620443 ;
faldo:reference isoform:P17620-1 .
?templateMotifSequenceProfileAlignmentOperationP17620449 edam:has_input signature:MF_01283 ;
rdf:type edam:operation_0300 .
?targetMotifMatch450 faldo:location ?targetMotifMatchRegionMatch451 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01283453 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP17620MF_01283444 .
?targetMotifMatchRegionMatch451 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01283452 .
?targetMotifMatchRegionMatchBeginMF_01283452 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01283445 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01283453 edam:has_input signature:MF_01283 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP17620MF_01283442, 1, (STRLEN(?templateMotifCigarP17620MF_01283442) - STRLEN(REPLACE(?templateMotifCigarP17620MF_01283442, CONCAT('^(?:-*[^-]){', STR(((351 - ?templateMotifSequenceMatchBeginPositionP17620443) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1454) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP17620MF_01283444, 1, (STRLEN(?targetMotifMatchCigarP17620MF_01283444) - STRLEN(REPLACE(?targetMotifMatchCigarP17620MF_01283444, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1454), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP17620MF_01283444, 1, (STRLEN(?targetMotifMatchCigarP17620MF_01283444) - STRLEN(REPLACE(?targetMotifMatchCigarP17620MF_01283444, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1454), '}'), '')))), '[^-]', ''))) AS ?step2455) .
BIND(((?step2455 + ?targetMotifMatchRegionMatchBeginPositionMF_01283445) - 1) AS ?thisPositionOn143) .
BIND(?thisPositionOn143 AS ?thisPositionOn144) .
BIND(?this AS ?pfs1t456) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn143))) AS ?pfsb140) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn144))) AS ?pfse141) .
FILTER (REGEX('[TS]', SUBSTR(?thisSequenceValue, ?thisPositionOn143, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01283a139')) AS ?annotation139) .
BIND(?this AS ?pfs138) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch461 faldo:location ?templateMotifSequenceMatchRegionP17620462 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP17620464 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP17620MF_01283457 .
?templateMotifSequenceMatchRegionP17620462 faldo:begin ?templateMotifSequenceMatchBeginP17620463 .
?templateMotifSequenceMatchBeginP17620463 faldo:position ?templateMotifSequenceMatchBeginPositionP17620458 ;
faldo:reference isoform:P17620-1 .
?templateMotifSequenceProfileAlignmentOperationP17620464 edam:has_input signature:MF_01283 ;
rdf:type edam:operation_0300 .
?targetMotifMatch465 faldo:location ?targetMotifMatchRegionMatch466 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01283468 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP17620MF_01283459 .
?targetMotifMatchRegionMatch466 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01283467 .
?targetMotifMatchRegionMatchBeginMF_01283467 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01283460 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01283468 edam:has_input signature:MF_01283 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP17620MF_01283457, 1, (STRLEN(?templateMotifCigarP17620MF_01283457) - STRLEN(REPLACE(?templateMotifCigarP17620MF_01283457, CONCAT('^(?:-*[^-]){', STR(((356 - ?templateMotifSequenceMatchBeginPositionP17620458) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1469) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP17620MF_01283459, 1, (STRLEN(?targetMotifMatchCigarP17620MF_01283459) - STRLEN(REPLACE(?targetMotifMatchCigarP17620MF_01283459, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1469), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP17620MF_01283459, 1, (STRLEN(?targetMotifMatchCigarP17620MF_01283459) - STRLEN(REPLACE(?targetMotifMatchCigarP17620MF_01283459, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1469), '}'), '')))), '[^-]', ''))) AS ?step2470) .
BIND(((?step2470 + ?targetMotifMatchRegionMatchBeginPositionMF_01283460) - 1) AS ?thisPositionOn150) .
BIND(?thisPositionOn150 AS ?thisPositionOn151) .
BIND(?this AS ?pfs1t471) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn150))) AS ?pfsb147) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn151))) AS ?pfse148) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn150, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01283a146')) AS ?annotation146) .
BIND(?this AS ?pfs145) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch476 faldo:location ?templateMotifSequenceMatchRegionP17620477 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP17620479 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP17620MF_01283472 .
?templateMotifSequenceMatchRegionP17620477 faldo:begin ?templateMotifSequenceMatchBeginP17620478 .
?templateMotifSequenceMatchBeginP17620478 faldo:position ?templateMotifSequenceMatchBeginPositionP17620473 ;
faldo:reference isoform:P17620-1 .
?templateMotifSequenceProfileAlignmentOperationP17620479 edam:has_input signature:MF_01283 ;
rdf:type edam:operation_0300 .
?targetMotifMatch480 faldo:location ?targetMotifMatchRegionMatch481 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01283483 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP17620MF_01283474 .
?targetMotifMatchRegionMatch481 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01283482 .
?targetMotifMatchRegionMatchBeginMF_01283482 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01283475 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01283483 edam:has_input signature:MF_01283 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP17620MF_01283472, 1, (STRLEN(?templateMotifCigarP17620MF_01283472) - STRLEN(REPLACE(?templateMotifCigarP17620MF_01283472, CONCAT('^(?:-*[^-]){', STR(((124 - ?templateMotifSequenceMatchBeginPositionP17620473) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1484) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP17620MF_01283474, 1, (STRLEN(?targetMotifMatchCigarP17620MF_01283474) - STRLEN(REPLACE(?targetMotifMatchCigarP17620MF_01283474, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1484), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP17620MF_01283474, 1, (STRLEN(?targetMotifMatchCigarP17620MF_01283474) - STRLEN(REPLACE(?targetMotifMatchCigarP17620MF_01283474, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1484), '}'), '')))), '[^-]', ''))) AS ?step2485) .
BIND(((?step2485 + ?targetMotifMatchRegionMatchBeginPositionMF_01283475) - 1) AS ?thisPositionOn156) .
BIND(?thisPositionOn156 AS ?thisPositionOn157) .
BIND(?this AS ?pfs1t486) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn156))) AS ?pfsb154) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn157))) AS ?pfse155) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn156, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01283a153')) AS ?annotation153) .
BIND(?this AS ?pfs152) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch491 faldo:location ?templateMotifSequenceMatchRegionP17620492 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP17620494 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP17620MF_01283487 .
?templateMotifSequenceMatchRegionP17620492 faldo:begin ?templateMotifSequenceMatchBeginP17620493 .
?templateMotifSequenceMatchBeginP17620493 faldo:position ?templateMotifSequenceMatchBeginPositionP17620488 ;
faldo:reference isoform:P17620-1 .
?templateMotifSequenceProfileAlignmentOperationP17620494 edam:has_input signature:MF_01283 ;
rdf:type edam:operation_0300 .
?targetMotifMatch495 faldo:location ?targetMotifMatchRegionMatch496 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01283498 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP17620MF_01283489 .
?targetMotifMatchRegionMatch496 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01283497 .
?targetMotifMatchRegionMatchBeginMF_01283497 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01283490 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01283498 edam:has_input signature:MF_01283 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP17620MF_01283487, 1, (STRLEN(?templateMotifCigarP17620MF_01283487) - STRLEN(REPLACE(?templateMotifCigarP17620MF_01283487, CONCAT('^(?:-*[^-]){', STR(((162 - ?templateMotifSequenceMatchBeginPositionP17620488) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1499) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP17620MF_01283489, 1, (STRLEN(?targetMotifMatchCigarP17620MF_01283489) - STRLEN(REPLACE(?targetMotifMatchCigarP17620MF_01283489, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1499), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP17620MF_01283489, 1, (STRLEN(?targetMotifMatchCigarP17620MF_01283489) - STRLEN(REPLACE(?targetMotifMatchCigarP17620MF_01283489, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1499), '}'), '')))), '[^-]', ''))) AS ?step2500) .
BIND(((?step2500 + ?targetMotifMatchRegionMatchBeginPositionMF_01283490) - 1) AS ?thisPositionOn162) .
BIND(?thisPositionOn162 AS ?thisPositionOn163) .
BIND(?this AS ?pfs1t501) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn162))) AS ?pfsb160) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn163))) AS ?pfse161) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn162, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01283a159')) AS ?annotation159) .
BIND(?this AS ?pfs158) .
}
}
"xsd:string |
