| http://purl.uniprot.org/unirules/MF_03140#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:838085 up:source unirule:MF_03140 .
_:838086 up:source unirule:MF_03140 .
_:838087 up:source unirule:MF_03140 .
_:838088 up:source unirule:MF_03140 .
_:838089 up:source unirule:MF_03140 .
_:838090 up:source unirule:MF_03140 .
_:838091 up:source unirule:MF_03140 .
_:838092 up:source unirule:MF_03140 .
_:838093 up:source unirule:MF_03140 .
_:838094 up:source unirule:MF_03140 .
_:838095 up:source unirule:MF_03140 .
_:838096 up:source unirule:MF_03140 .
_:838097 up:source unirule:MF_03140 .
_:838098 up:source unirule:MF_03140 .
_:838099 up:source unirule:MF_03140 .
_:838100 up:source unirule:MF_03140 .
_:838101 up:source unirule:MF_03140 .
_:838102 up:source unirule:MF_03140 .
_:838103 up:source unirule:MF_03140 .
_:838104 up:source unirule:MF_03140 .
_:838105 up:source unirule:MF_03140 .
_:838106 up:source unirule:MF_03140 .
_:838107 up:source unirule:MF_03140 .
_:838108 up:source unirule:MF_03140 .
_:838109 up:source unirule:MF_03140 .
_:838110 up:source unirule:MF_03140 .
_:838111 up:source unirule:MF_03140 .
_:838112 up:source unirule:MF_03140 .
_:838113 up:source unirule:MF_03140 .
_:838114 up:source unirule:MF_03140 .
_:838115 up:source unirule:MF_03140 .
_:838116 up:source unirule:MF_03140 .
_:838117 up:source unirule:MF_03140 .
_:838118 up:source unirule:MF_03140 .
_:838119 up:source unirule:MF_03140 .
_:838120 up:source unirule:MF_03140 .
_:838121 up:source unirule:MF_03140 .
_:838122 up:source unirule:MF_03140 .
_:838123 up:source unirule:MF_03140 .
_:838124 up:source unirule:MF_03140 .
_:838125 up:source unirule:MF_03140 .
_:838126 up:source unirule:MF_03140 .
_:838127 up:source unirule:MF_03140 .
_:838128 up:source unirule:MF_03140 .
_:838129 up:source unirule:MF_03140 .
_:838130 up:source unirule:MF_03140 .
_:838131 up:source unirule:MF_03140 .
_:838132 up:source unirule:MF_03140 .
_:838133 up:source unirule:MF_03140 .
_:838134 up:source unirule:MF_03140 .
_:838135 up:source unirule:MF_03140 .
_:838136 up:source unirule:MF_03140 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation2 ,
?annotation3 ,
?annotation4 ,
?annotation8 ;
up:classifiedWith GO:0000287 ,
GO:0003677 ,
GO:0005634 ,
GO:0005739 ,
GO:0006284 ,
GO:0008409 ,
GO:0017108 ,
GO:0043137 ,
keyword:227 ,
keyword:234 ,
keyword:235 ,
keyword:255 ,
keyword:269 ,
keyword:378 ,
keyword:460 ,
keyword:479 ,
keyword:496 ,
keyword:539 ,
keyword:540 ,
keyword:597 ;
up:recommendedName ?name0 .
?name0 up:ecName '3.1.-.-' ;
up:fullName 'Flap endonuclease 1' ;
up:shortName 'FEN-1' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Flap structure-specific endonuclease 1' ;
rdf:type up:Structured_Name .
?annotation2 a up:Function_Annotation ;
rdfs:comment "Structure-specific nuclease with 5'-flap endonuclease and 5'-3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site-terminated flap. Acts as a genome stabilization factor that prevents flaps from equilibrating into structures that lead to duplications and deletions. Also possesses 5'-3' exonuclease activity on nicked or gapped double-stranded DNA, and exhibits RNase H activity. Also involved in replication and repair of rDNA and in repairing mitochondrial DNA." .
?annotation3 up:cofactor chebi:18420 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 2 magnesium ions per subunit. They probably participate in the reaction catalyzed by the enzyme. May bind an additional third magnesium ion after substrate binding.' .
?annotation4 a up:Subcellular_Location_Annotation ;
rdfs:comment 'Resides mostly in the nucleoli and relocalizes to the nucleoplasm upon DNA damage' .
?annotation4li5 up:cellularComponent .
?annotation4li6 up:cellularComponent .
?annotation4li7 up:cellularComponent .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the XPG/RAD2 endonuclease family. FEN1 subfamily.' .
?case9 up:classifiedWith keyword:488 .
?case10 up:classifiedWith keyword:7 .
?pfs22 up:annotation ?annotation23 .
?annotation23 faldo:begin ?pfsb24 ;
faldo:end ?pfse25 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'N6-acetyllysine' .
?pfsb24 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?pfse25 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfs28 up:annotation ?annotation29 .
?annotation29 faldo:begin ?pfsb30 ;
faldo:end ?pfse31 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'N6-acetyllysine' .
?pfsb30 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?pfse31 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfs34 up:annotation ?annotation35 .
?annotation35 faldo:begin ?pfsb36 ;
faldo:end ?pfse37 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'N6-acetyllysine' .
?pfsb36 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?pfse37 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?pfs40 up:annotation ?annotation41 .
?annotation41 faldo:begin ?pfsb42 ;
faldo:end ?pfse43 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'N6-acetyllysine' .
?pfsb42 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?pfse43 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?pfs46 up:annotation ?annotation47 .
?annotation47 faldo:begin ?pfsb48 ;
faldo:end ?pfse49 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Phosphoserine; by CDK2' .
?pfsb48 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?pfse49 faldo:position ?thisPositionOn51 ;
rdf:type faldo:ExactPosition .
?pfs52 up:annotation ?annotation53 .
?annotation53 faldo:begin ?pfsb54 ;
faldo:end ?pfse55 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Symmetric dimethylarginine; by PRMT5' .
?pfsb54 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?pfse55 faldo:position ?thisPositionOn57 ;
rdf:type faldo:ExactPosition .
?pfs58 up:annotation ?annotation59 .
?annotation59 faldo:begin ?pfsb60 ;
faldo:end ?pfse61 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Symmetric dimethylarginine; by PRMT5' .
?pfsb60 faldo:position ?thisPositionOn62 ;
rdf:type faldo:ExactPosition .
?pfse61 faldo:position ?thisPositionOn63 ;
rdf:type faldo:ExactPosition .
?pfs64 up:annotation ?annotation65 .
?annotation65 faldo:begin ?pfsb66 ;
faldo:end ?pfse67 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Symmetric dimethylarginine; by PRMT5' .
?pfsb66 faldo:position ?thisPositionOn68 ;
rdf:type faldo:ExactPosition .
?pfse67 faldo:position ?thisPositionOn69 ;
rdf:type faldo:ExactPosition .
?pfs70 up:annotation ?annotation71 .
?annotation71 faldo:begin ?pfsb72 ;
faldo:end ?pfse73 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Symmetric dimethylarginine; by PRMT5' .
?pfsb72 faldo:position ?thisPositionOn74 ;
rdf:type faldo:ExactPosition .
?pfse73 faldo:position ?thisPositionOn75 ;
rdf:type faldo:ExactPosition .
?pfs76 up:annotation ?annotation77 .
?annotation77 faldo:begin ?pfsb78 ;
faldo:end ?pfse79 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'N-domain' .
?pfsb78 faldo:position ?thisPositionOn80 ;
rdf:type faldo:ExactPosition .
?pfse79 faldo:position ?thisPositionOn81 ;
rdf:type faldo:ExactPosition .
?pfs82 up:annotation ?annotation83 .
?annotation83 faldo:begin ?pfsb84 ;
faldo:end ?pfse85 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'I-domain' .
?pfsb84 faldo:position ?thisPositionOn86 ;
rdf:type faldo:ExactPosition .
?pfse85 faldo:position ?thisPositionOn87 ;
rdf:type faldo:ExactPosition .
?pfs88 up:annotation ?annotation89 .
?annotation89 faldo:begin ?pfsb90 ;
faldo:end ?pfse91 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Interaction with PCNA' .
?pfsb90 faldo:position ?thisPositionOn92 ;
rdf:type faldo:ExactPosition .
?pfse91 faldo:position ?thisPositionOn93 ;
rdf:type faldo:ExactPosition .
?pfs94 up:annotation ?annotation95 .
?annotation95 faldo:begin ?pfsb96 ;
faldo:end ?pfse97 ;
up:ligand ?ligand98 ;
rdf:type up:Binding_Site_Annotation .
?pfsb96 faldo:position ?thisPositionOn99 ;
rdf:type faldo:ExactPosition .
?pfse97 faldo:position ?thisPositionOn100 ;
rdf:type faldo:ExactPosition .
?ligand98 rdfs:subClassOf chebi:18420 .
?pfs101 up:annotation ?annotation102 .
?annotation102 faldo:begin ?pfsb103 ;
faldo:end ?pfse104 ;
up:ligand ?ligand105 ;
rdf:type up:Binding_Site_Annotation .
?pfsb103 faldo:position ?thisPositionOn106 ;
rdf:type faldo:ExactPosition .
?pfse104 faldo:position ?thisPositionOn107 ;
rdf:type faldo:ExactPosition .
?ligand105 rdfs:subClassOf chebi:18420 .
?pfs108 up:annotation ?annotation109 .
?annotation109 faldo:begin ?pfsb110 ;
faldo:end ?pfse111 ;
up:ligand ?ligand112 ;
rdf:type up:Binding_Site_Annotation .
?pfsb110 faldo:position ?thisPositionOn113 ;
rdf:type faldo:ExactPosition .
?pfse111 faldo:position ?thisPositionOn114 ;
rdf:type faldo:ExactPosition .
?ligand112 rdfs:subClassOf chebi:18420 .
?pfs115 up:annotation ?annotation116 .
?annotation116 faldo:begin ?pfsb117 ;
faldo:end ?pfse118 ;
up:ligand ?ligand119 ;
rdf:type up:Binding_Site_Annotation .
?pfsb117 faldo:position ?thisPositionOn120 ;
rdf:type faldo:ExactPosition .
?pfse118 faldo:position ?thisPositionOn121 ;
rdf:type faldo:ExactPosition .
?ligand119 rdfs:subClassOf chebi:18420 .
?pfs122 up:annotation ?annotation123 .
?annotation123 faldo:begin ?pfsb124 ;
faldo:end ?pfse125 ;
up:ligand ?ligand126 ;
rdf:type up:Binding_Site_Annotation .
?pfsb124 faldo:position ?thisPositionOn127 ;
rdf:type faldo:ExactPosition .
?pfse125 faldo:position ?thisPositionOn128 ;
rdf:type faldo:ExactPosition .
?ligand126 rdfs:subClassOf chebi:18420 .
?pfs129 up:annotation ?annotation130 .
?annotation130 faldo:begin ?pfsb131 ;
faldo:end ?pfse132 ;
up:ligand ?ligand133 ;
rdf:type up:Binding_Site_Annotation .
?pfsb131 faldo:position ?thisPositionOn134 ;
rdf:type faldo:ExactPosition .
?pfse132 faldo:position ?thisPositionOn135 ;
rdf:type faldo:ExactPosition .
?ligand133 rdfs:subClassOf chebi:18420 .
?pfs136 up:annotation ?annotation137 .
?annotation137 faldo:begin ?pfsb138 ;
faldo:end ?pfse139 ;
up:ligand ?ligand140 ;
rdf:type up:Binding_Site_Annotation .
?pfsb138 faldo:position ?thisPositionOn141 ;
rdf:type faldo:ExactPosition .
?pfse139 faldo:position ?thisPositionOn142 ;
rdf:type faldo:ExactPosition .
?ligand140 rdfs:subClassOf chebi:18420 .
?pfs143 up:annotation ?annotation144 .
?annotation144 faldo:begin ?pfsb145 ;
faldo:end ?pfse146 ;
up:ligand ?ligand147 ;
rdf:type up:Binding_Site_Annotation .
?pfsb145 faldo:position ?thisPositionOn148 ;
rdf:type faldo:ExactPosition .
?pfse146 faldo:position ?thisPositionOn149 ;
rdf:type faldo:ExactPosition .
?ligand147 rdfs:subClassOf chebi:16991 .
?pfs150 up:annotation ?annotation151 .
?annotation151 faldo:begin ?pfsb152 ;
faldo:end ?pfse153 ;
up:ligand ?ligand154 ;
rdf:type up:Binding_Site_Annotation .
?pfsb152 faldo:position ?thisPositionOn155 ;
rdf:type faldo:ExactPosition .
?pfse153 faldo:position ?thisPositionOn156 ;
rdf:type faldo:ExactPosition .
?ligand154 rdfs:subClassOf chebi:16991 .
?pfs157 up:annotation ?annotation158 .
?annotation158 faldo:begin ?pfsb159 ;
faldo:end ?pfse160 ;
up:ligand ?ligand161 ;
rdf:type up:Binding_Site_Annotation .
?pfsb159 faldo:position ?thisPositionOn162 ;
rdf:type faldo:ExactPosition .
?pfse160 faldo:position ?thisPositionOn163 ;
rdf:type faldo:ExactPosition .
?ligand161 rdfs:subClassOf chebi:16991 .
?pfs164 up:annotation ?annotation165 .
?annotation165 faldo:begin ?pfsb166 ;
faldo:end ?pfse167 ;
up:ligand ?ligand168 ;
rdf:type up:Binding_Site_Annotation .
?pfsb166 faldo:position ?thisPositionOn169 ;
rdf:type faldo:ExactPosition .
?pfse167 faldo:position ?thisPositionOn170 ;
rdf:type faldo:ExactPosition .
?ligand168 rdfs:subClassOf chebi:16991 .
?pfs171 up:annotation ?annotation172 .
?annotation172 faldo:begin ?pfsb173 ;
faldo:end ?pfse174 ;
up:ligand ?ligand175 ;
rdf:type up:Binding_Site_Annotation .
?pfsb173 faldo:position ?thisPositionOn176 ;
rdf:type faldo:ExactPosition .
?pfse174 faldo:position ?thisPositionOn177 ;
rdf:type faldo:ExactPosition .
?ligand175 rdfs:subClassOf chebi:16991 .
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up:attribution _:838085 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:838138 a rdf:Statement ;
up:attribution _:838086 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:838139 a rdf:Statement ;
up:attribution _:838087 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:838140 a rdf:Statement ;
up:attribution _:838088 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:838141 a rdf:Statement ;
up:attribution _:838089 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:838142 a rdf:Statement ;
up:attribution _:838090 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:838143 a rdf:Statement ;
up:attribution _:838091 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:255 .
_:838144 a rdf:Statement ;
up:attribution _:838092 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:269 .
_:838145 a rdf:Statement ;
up:attribution _:838093 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:227 .
_:838146 a rdf:Statement ;
up:attribution _:838094 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:234 .
_:838147 a rdf:Statement ;
up:attribution _:838095 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:235 .
_:838148 a rdf:Statement ;
up:attribution _:838096 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:838149 a rdf:Statement ;
up:attribution _:838097 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:838150 a rdf:Statement ;
up:attribution _:838098 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:838151 a rdf:Statement ;
up:attribution _:838099 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:496 .
_:838152 a rdf:Statement ;
up:attribution _:838100 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:540 .
_:838153 a rdf:Statement ;
up:attribution _:838101 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:539 .
_:838154 a rdf:Statement ;
up:attribution _:838102 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:597 .
_:838155 a rdf:Statement ;
up:attribution _:838103 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005634 .
_:838156 a rdf:Statement ;
up:attribution _:838104 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005739 .
_:838157 a rdf:Statement ;
up:attribution _:838105 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003677 .
_:838158 a rdf:Statement ;
up:attribution _:838106 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008409 .
_:838159 a rdf:Statement ;
up:attribution _:838107 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0017108 .
_:838160 a rdf:Statement ;
up:attribution _:838108 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000287 .
_:838161 a rdf:Statement ;
up:attribution _:838109 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006284 .
_:838162 a rdf:Statement ;
up:attribution _:838110 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0043137 .
_:838163 a rdf:Statement ;
up:attribution _:838111 ;
rdf:subject ?case9 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:488 .
_:838164 a rdf:Statement ;
up:attribution _:838112 ;
rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:7 .
_:838165 a rdf:Statement ;
up:source unirule:MF_03140 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:838166 a rdf:Statement ;
up:attribution _:838113 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:838167 a rdf:Statement ;
up:source unirule:MF_03140 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
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rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:838169 a rdf:Statement ;
up:source unirule:MF_03140 ;
rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
_:838170 a rdf:Statement ;
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rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
_:838171 a rdf:Statement ;
up:source unirule:MF_03140 ;
rdf:subject ?pfs40 ;
rdf:predicate up:annotation ;
rdf:object ?annotation41 .
_:838172 a rdf:Statement ;
up:attribution _:838116 ;
rdf:subject ?pfs40 ;
rdf:predicate up:annotation ;
rdf:object ?annotation41 .
_:838173 a rdf:Statement ;
up:source unirule:MF_03140 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
_:838174 a rdf:Statement ;
up:attribution _:838117 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
_:838175 a rdf:Statement ;
up:source unirule:MF_03140 ;
rdf:subject ?pfs52 ;
rdf:predicate up:annotation ;
rdf:object ?annotation53 .
_:838176 a rdf:Statement ;
up:attribution _:838118 ;
rdf:subject ?pfs52 ;
rdf:predicate up:annotation ;
rdf:object ?annotation53 .
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up:source unirule:MF_03140 ;
rdf:subject ?pfs58 ;
rdf:predicate up:annotation ;
rdf:object ?annotation59 .
_:838178 a rdf:Statement ;
up:attribution _:838119 ;
rdf:subject ?pfs58 ;
rdf:predicate up:annotation ;
rdf:object ?annotation59 .
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up:source unirule:MF_03140 ;
rdf:subject ?pfs64 ;
rdf:predicate up:annotation ;
rdf:object ?annotation65 .
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rdf:subject ?pfs64 ;
rdf:predicate up:annotation ;
rdf:object ?annotation65 .
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up:source unirule:MF_03140 ;
rdf:subject ?pfs70 ;
rdf:predicate up:annotation ;
rdf:object ?annotation71 .
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up:attribution _:838121 ;
rdf:subject ?pfs70 ;
rdf:predicate up:annotation ;
rdf:object ?annotation71 .
_:838183 a rdf:Statement ;
up:source unirule:MF_03140 ;
rdf:subject ?pfs76 ;
rdf:predicate up:annotation ;
rdf:object ?annotation77 .
_:838184 a rdf:Statement ;
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rdf:subject ?pfs76 ;
rdf:predicate up:annotation ;
rdf:object ?annotation77 .
_:838185 a rdf:Statement ;
up:source unirule:MF_03140 ;
rdf:subject ?pfs82 ;
rdf:predicate up:annotation ;
rdf:object ?annotation83 .
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rdf:subject ?pfs82 ;
rdf:predicate up:annotation ;
rdf:object ?annotation83 .
_:838187 a rdf:Statement ;
up:source unirule:MF_03140 ;
rdf:subject ?pfs88 ;
rdf:predicate up:annotation ;
rdf:object ?annotation89 .
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up:attribution _:838124 ;
rdf:subject ?pfs88 ;
rdf:predicate up:annotation ;
rdf:object ?annotation89 .
_:838189 a rdf:Statement ;
up:source unirule:MF_03140 ;
rdf:subject ?pfs94 ;
rdf:predicate up:annotation ;
rdf:object ?annotation95 .
_:838190 a rdf:Statement ;
up:attribution _:838125 ;
rdf:subject ?pfs94 ;
rdf:predicate up:annotation ;
rdf:object ?annotation95 .
_:838191 a rdf:Statement ;
up:source unirule:MF_03140 ;
rdf:subject ?pfs101 ;
rdf:predicate up:annotation ;
rdf:object ?annotation102 .
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up:attribution _:838126 ;
rdf:subject ?pfs101 ;
rdf:predicate up:annotation ;
rdf:object ?annotation102 .
_:838193 a rdf:Statement ;
up:source unirule:MF_03140 ;
rdf:subject ?pfs108 ;
rdf:predicate up:annotation ;
rdf:object ?annotation109 .
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up:attribution _:838127 ;
rdf:subject ?pfs108 ;
rdf:predicate up:annotation ;
rdf:object ?annotation109 .
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up:source unirule:MF_03140 ;
rdf:subject ?pfs115 ;
rdf:predicate up:annotation ;
rdf:object ?annotation116 .
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up:attribution _:838128 ;
rdf:subject ?pfs115 ;
rdf:predicate up:annotation ;
rdf:object ?annotation116 .
_:838197 a rdf:Statement ;
up:source unirule:MF_03140 ;
rdf:subject ?pfs122 ;
rdf:predicate up:annotation ;
rdf:object ?annotation123 .
_:838198 a rdf:Statement ;
up:attribution _:838129 ;
rdf:subject ?pfs122 ;
rdf:predicate up:annotation ;
rdf:object ?annotation123 .
_:838199 a rdf:Statement ;
up:source unirule:MF_03140 ;
rdf:subject ?pfs129 ;
rdf:predicate up:annotation ;
rdf:object ?annotation130 .
_:838200 a rdf:Statement ;
up:attribution _:838130 ;
rdf:subject ?pfs129 ;
rdf:predicate up:annotation ;
rdf:object ?annotation130 .
_:838201 a rdf:Statement ;
up:source unirule:MF_03140 ;
rdf:subject ?pfs136 ;
rdf:predicate up:annotation ;
rdf:object ?annotation137 .
_:838202 a rdf:Statement ;
up:attribution _:838131 ;
rdf:subject ?pfs136 ;
rdf:predicate up:annotation ;
rdf:object ?annotation137 .
_:838203 a rdf:Statement ;
up:source unirule:MF_03140 ;
rdf:subject ?pfs143 ;
rdf:predicate up:annotation ;
rdf:object ?annotation144 .
_:838204 a rdf:Statement ;
up:attribution _:838132 ;
rdf:subject ?pfs143 ;
rdf:predicate up:annotation ;
rdf:object ?annotation144 .
_:838205 a rdf:Statement ;
up:source unirule:MF_03140 ;
rdf:subject ?pfs150 ;
rdf:predicate up:annotation ;
rdf:object ?annotation151 .
_:838206 a rdf:Statement ;
up:attribution _:838133 ;
rdf:subject ?pfs150 ;
rdf:predicate up:annotation ;
rdf:object ?annotation151 .
_:838207 a rdf:Statement ;
up:source unirule:MF_03140 ;
rdf:subject ?pfs157 ;
rdf:predicate up:annotation ;
rdf:object ?annotation158 .
_:838208 a rdf:Statement ;
up:attribution _:838134 ;
rdf:subject ?pfs157 ;
rdf:predicate up:annotation ;
rdf:object ?annotation158 .
_:838209 a rdf:Statement ;
up:source unirule:MF_03140 ;
rdf:subject ?pfs164 ;
rdf:predicate up:annotation ;
rdf:object ?annotation165 .
_:838210 a rdf:Statement ;
up:attribution _:838135 ;
rdf:subject ?pfs164 ;
rdf:predicate up:annotation ;
rdf:object ?annotation165 .
_:838211 a rdf:Statement ;
up:source unirule:MF_03140 ;
rdf:subject ?pfs171 ;
rdf:predicate up:annotation ;
rdf:object ?annotation172 .
_:838212 a rdf:Statement ;
up:attribution _:838136 ;
rdf:subject ?pfs171 ;
rdf:predicate up:annotation ;
rdf:object ?annotation172 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_03140
#Rule MF_03140 Created by:? on:2012-08-22 Modified by:Edouard de Castro on:2022-11-19
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00614 .
?thisOrganism rdfs:subClassOf+ taxon:2759 .
BIND(URI(CONCAT(STR(?this), '#MF_03140a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_03140a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_03140a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_03140a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_03140a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_03140a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch182 faldo:location ?templateMotifSequenceMatchRegionP39748183 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP39748185 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP39748MF_00614178 .
?templateMotifSequenceMatchRegionP39748183 faldo:begin ?templateMotifSequenceMatchBeginP39748184 .
?templateMotifSequenceMatchBeginP39748184 faldo:position ?templateMotifSequenceMatchBeginPositionP39748179 ;
faldo:reference isoform:P39748-1 .
?templateMotifSequenceProfileAlignmentOperationP39748185 edam:has_input signature:MF_00614 ;
rdf:type edam:operation_0300 .
?targetMotifMatch186 faldo:location ?targetMotifMatchRegionMatch187 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00614189 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP39748MF_00614180 .
?targetMotifMatchRegionMatch187 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00614188 .
?targetMotifMatchRegionMatchBeginMF_00614188 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00614181 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00614189 edam:has_input signature:MF_00614 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagacet) .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39748MF_00614178, 1, (STRLEN(?templateMotifCigarP39748MF_00614178) - STRLEN(REPLACE(?templateMotifCigarP39748MF_00614178, CONCAT('^(?:-*[^-]){', STR(((354 - ?templateMotifSequenceMatchBeginPositionP39748179) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1190) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39748MF_00614180, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614180) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614180, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1190), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39748MF_00614180, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614180) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614180, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1190), '}'), '')))), '[^-]', ''))) AS ?step2191) .
BIND(((?step2191 + ?targetMotifMatchRegionMatchBeginPositionMF_00614181) - 1) AS ?thisPositionOn26) .
BIND(?thisPositionOn26 AS ?thisPositionOn27) .
BIND(?this AS ?pfs1t192) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb24) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse25) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn26, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_03140a23')) AS ?annotation23) .
BIND(?this AS ?pfs22) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch197 faldo:location ?templateMotifSequenceMatchRegionP39748198 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP39748200 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP39748MF_00614193 .
?templateMotifSequenceMatchRegionP39748198 faldo:begin ?templateMotifSequenceMatchBeginP39748199 .
?templateMotifSequenceMatchBeginP39748199 faldo:position ?templateMotifSequenceMatchBeginPositionP39748194 ;
faldo:reference isoform:P39748-1 .
?templateMotifSequenceProfileAlignmentOperationP39748200 edam:has_input signature:MF_00614 ;
rdf:type edam:operation_0300 .
?targetMotifMatch201 faldo:location ?targetMotifMatchRegionMatch202 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00614204 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP39748MF_00614195 .
?targetMotifMatchRegionMatch202 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00614203 .
?targetMotifMatchRegionMatchBeginMF_00614203 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00614196 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00614204 edam:has_input signature:MF_00614 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagacet) .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39748MF_00614193, 1, (STRLEN(?templateMotifCigarP39748MF_00614193) - STRLEN(REPLACE(?templateMotifCigarP39748MF_00614193, CONCAT('^(?:-*[^-]){', STR(((375 - ?templateMotifSequenceMatchBeginPositionP39748194) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1205) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39748MF_00614195, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614195) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614195, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1205), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39748MF_00614195, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614195) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614195, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1205), '}'), '')))), '[^-]', ''))) AS ?step2206) .
BIND(((?step2206 + ?targetMotifMatchRegionMatchBeginPositionMF_00614196) - 1) AS ?thisPositionOn32) .
BIND(?thisPositionOn32 AS ?thisPositionOn33) .
BIND(?this AS ?pfs1t207) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfsb30) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfse31) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn32, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_03140a29')) AS ?annotation29) .
BIND(?this AS ?pfs28) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch212 faldo:location ?templateMotifSequenceMatchRegionP39748213 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP39748215 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP39748MF_00614208 .
?templateMotifSequenceMatchRegionP39748213 faldo:begin ?templateMotifSequenceMatchBeginP39748214 .
?templateMotifSequenceMatchBeginP39748214 faldo:position ?templateMotifSequenceMatchBeginPositionP39748209 ;
faldo:reference isoform:P39748-1 .
?templateMotifSequenceProfileAlignmentOperationP39748215 edam:has_input signature:MF_00614 ;
rdf:type edam:operation_0300 .
?targetMotifMatch216 faldo:location ?targetMotifMatchRegionMatch217 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00614219 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP39748MF_00614210 .
?targetMotifMatchRegionMatch217 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00614218 .
?targetMotifMatchRegionMatchBeginMF_00614218 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00614211 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00614219 edam:has_input signature:MF_00614 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagacet) .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39748MF_00614208, 1, (STRLEN(?templateMotifCigarP39748MF_00614208) - STRLEN(REPLACE(?templateMotifCigarP39748MF_00614208, CONCAT('^(?:-*[^-]){', STR(((377 - ?templateMotifSequenceMatchBeginPositionP39748209) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1220) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39748MF_00614210, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614210) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614210, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1220), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39748MF_00614210, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614210) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614210, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1220), '}'), '')))), '[^-]', ''))) AS ?step2221) .
BIND(((?step2221 + ?targetMotifMatchRegionMatchBeginPositionMF_00614211) - 1) AS ?thisPositionOn38) .
BIND(?thisPositionOn38 AS ?thisPositionOn39) .
BIND(?this AS ?pfs1t222) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfsb36) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfse37) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn38, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_03140a35')) AS ?annotation35) .
BIND(?this AS ?pfs34) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch227 faldo:location ?templateMotifSequenceMatchRegionP39748228 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP39748230 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP39748MF_00614223 .
?templateMotifSequenceMatchRegionP39748228 faldo:begin ?templateMotifSequenceMatchBeginP39748229 .
?templateMotifSequenceMatchBeginP39748229 faldo:position ?templateMotifSequenceMatchBeginPositionP39748224 ;
faldo:reference isoform:P39748-1 .
?templateMotifSequenceProfileAlignmentOperationP39748230 edam:has_input signature:MF_00614 ;
rdf:type edam:operation_0300 .
?targetMotifMatch231 faldo:location ?targetMotifMatchRegionMatch232 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00614234 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP39748MF_00614225 .
?targetMotifMatchRegionMatch232 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00614233 .
?targetMotifMatchRegionMatchBeginMF_00614233 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00614226 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00614234 edam:has_input signature:MF_00614 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagacet) .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39748MF_00614223, 1, (STRLEN(?templateMotifCigarP39748MF_00614223) - STRLEN(REPLACE(?templateMotifCigarP39748MF_00614223, CONCAT('^(?:-*[^-]){', STR(((380 - ?templateMotifSequenceMatchBeginPositionP39748224) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1235) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39748MF_00614225, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614225) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614225, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1235), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39748MF_00614225, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614225) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614225, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1235), '}'), '')))), '[^-]', ''))) AS ?step2236) .
BIND(((?step2236 + ?targetMotifMatchRegionMatchBeginPositionMF_00614226) - 1) AS ?thisPositionOn44) .
BIND(?thisPositionOn44 AS ?thisPositionOn45) .
BIND(?this AS ?pfs1t237) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfsb42) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfse43) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn44, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_03140a41')) AS ?annotation41) .
BIND(?this AS ?pfs40) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch242 faldo:location ?templateMotifSequenceMatchRegionP39748243 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP39748245 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP39748MF_00614238 .
?templateMotifSequenceMatchRegionP39748243 faldo:begin ?templateMotifSequenceMatchBeginP39748244 .
?templateMotifSequenceMatchBeginP39748244 faldo:position ?templateMotifSequenceMatchBeginPositionP39748239 ;
faldo:reference isoform:P39748-1 .
?templateMotifSequenceProfileAlignmentOperationP39748245 edam:has_input signature:MF_00614 ;
rdf:type edam:operation_0300 .
?targetMotifMatch246 faldo:location ?targetMotifMatchRegionMatch247 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00614249 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP39748MF_00614240 .
?targetMotifMatchRegionMatch247 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00614248 .
?targetMotifMatchRegionMatchBeginMF_00614248 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00614241 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00614249 edam:has_input signature:MF_00614 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagphospho187) .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39748MF_00614238, 1, (STRLEN(?templateMotifCigarP39748MF_00614238) - STRLEN(REPLACE(?templateMotifCigarP39748MF_00614238, CONCAT('^(?:-*[^-]){', STR(((187 - ?templateMotifSequenceMatchBeginPositionP39748239) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1250) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39748MF_00614240, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614240) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614240, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1250), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39748MF_00614240, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614240) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614240, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1250), '}'), '')))), '[^-]', ''))) AS ?step2251) .
BIND(((?step2251 + ?targetMotifMatchRegionMatchBeginPositionMF_00614241) - 1) AS ?thisPositionOn50) .
BIND(?thisPositionOn50 AS ?thisPositionOn51) .
BIND(?this AS ?pfs2t252) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfsb48) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfse49) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn50, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_03140a47')) AS ?annotation47) .
BIND(?this AS ?pfs46) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch257 faldo:location ?templateMotifSequenceMatchRegionP39748258 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP39748260 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP39748MF_00614253 .
?templateMotifSequenceMatchRegionP39748258 faldo:begin ?templateMotifSequenceMatchBeginP39748259 .
?templateMotifSequenceMatchBeginP39748259 faldo:position ?templateMotifSequenceMatchBeginPositionP39748254 ;
faldo:reference isoform:P39748-1 .
?templateMotifSequenceProfileAlignmentOperationP39748260 edam:has_input signature:MF_00614 ;
rdf:type edam:operation_0300 .
?targetMotifMatch261 faldo:location ?targetMotifMatchRegionMatch262 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00614264 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP39748MF_00614255 .
?targetMotifMatchRegionMatch262 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00614263 .
?targetMotifMatchRegionMatchBeginMF_00614263 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00614256 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00614264 edam:has_input signature:MF_00614 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagmeth192) .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39748MF_00614253, 1, (STRLEN(?templateMotifCigarP39748MF_00614253) - STRLEN(REPLACE(?templateMotifCigarP39748MF_00614253, CONCAT('^(?:-*[^-]){', STR(((192 - ?templateMotifSequenceMatchBeginPositionP39748254) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1265) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39748MF_00614255, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614255) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614255, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1265), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39748MF_00614255, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614255) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614255, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1265), '}'), '')))), '[^-]', ''))) AS ?step2266) .
BIND(((?step2266 + ?targetMotifMatchRegionMatchBeginPositionMF_00614256) - 1) AS ?thisPositionOn56) .
BIND(?thisPositionOn56 AS ?thisPositionOn57) .
BIND(?this AS ?pfs3t267) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfsb54) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfse55) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn56, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_03140a53')) AS ?annotation53) .
BIND(?this AS ?pfs52) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch272 faldo:location ?templateMotifSequenceMatchRegionP39748273 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP39748275 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP39748MF_00614268 .
?templateMotifSequenceMatchRegionP39748273 faldo:begin ?templateMotifSequenceMatchBeginP39748274 .
?templateMotifSequenceMatchBeginP39748274 faldo:position ?templateMotifSequenceMatchBeginPositionP39748269 ;
faldo:reference isoform:P39748-1 .
?templateMotifSequenceProfileAlignmentOperationP39748275 edam:has_input signature:MF_00614 ;
rdf:type edam:operation_0300 .
?targetMotifMatch276 faldo:location ?targetMotifMatchRegionMatch277 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00614279 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP39748MF_00614270 .
?targetMotifMatchRegionMatch277 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00614278 .
?targetMotifMatchRegionMatchBeginMF_00614278 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00614271 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00614279 edam:has_input signature:MF_00614 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagmeth) .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39748MF_00614268, 1, (STRLEN(?templateMotifCigarP39748MF_00614268) - STRLEN(REPLACE(?templateMotifCigarP39748MF_00614268, CONCAT('^(?:-*[^-]){', STR(((19 - ?templateMotifSequenceMatchBeginPositionP39748269) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1280) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39748MF_00614270, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614270) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614270, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1280), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39748MF_00614270, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614270) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614270, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1280), '}'), '')))), '[^-]', ''))) AS ?step2281) .
BIND(((?step2281 + ?targetMotifMatchRegionMatchBeginPositionMF_00614271) - 1) AS ?thisPositionOn62) .
BIND(?thisPositionOn62 AS ?thisPositionOn63) .
BIND(?this AS ?pfs4t282) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfsb60) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfse61) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn62, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_03140a59')) AS ?annotation59) .
BIND(?this AS ?pfs58) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch287 faldo:location ?templateMotifSequenceMatchRegionP39748288 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP39748290 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP39748MF_00614283 .
?templateMotifSequenceMatchRegionP39748288 faldo:begin ?templateMotifSequenceMatchBeginP39748289 .
?templateMotifSequenceMatchBeginP39748289 faldo:position ?templateMotifSequenceMatchBeginPositionP39748284 ;
faldo:reference isoform:P39748-1 .
?templateMotifSequenceProfileAlignmentOperationP39748290 edam:has_input signature:MF_00614 ;
rdf:type edam:operation_0300 .
?targetMotifMatch291 faldo:location ?targetMotifMatchRegionMatch292 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00614294 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP39748MF_00614285 .
?targetMotifMatchRegionMatch292 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00614293 .
?targetMotifMatchRegionMatchBeginMF_00614293 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00614286 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00614294 edam:has_input signature:MF_00614 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagmeth) .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39748MF_00614283, 1, (STRLEN(?templateMotifCigarP39748MF_00614283) - STRLEN(REPLACE(?templateMotifCigarP39748MF_00614283, CONCAT('^(?:-*[^-]){', STR(((100 - ?templateMotifSequenceMatchBeginPositionP39748284) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1295) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39748MF_00614285, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614285) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614285, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1295), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39748MF_00614285, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614285) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614285, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1295), '}'), '')))), '[^-]', ''))) AS ?step2296) .
BIND(((?step2296 + ?targetMotifMatchRegionMatchBeginPositionMF_00614286) - 1) AS ?thisPositionOn68) .
BIND(?thisPositionOn68 AS ?thisPositionOn69) .
BIND(?this AS ?pfs4t297) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn68))) AS ?pfsb66) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn69))) AS ?pfse67) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn68, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_03140a65')) AS ?annotation65) .
BIND(?this AS ?pfs64) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch302 faldo:location ?templateMotifSequenceMatchRegionP39748303 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP39748305 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP39748MF_00614298 .
?templateMotifSequenceMatchRegionP39748303 faldo:begin ?templateMotifSequenceMatchBeginP39748304 .
?templateMotifSequenceMatchBeginP39748304 faldo:position ?templateMotifSequenceMatchBeginPositionP39748299 ;
faldo:reference isoform:P39748-1 .
?templateMotifSequenceProfileAlignmentOperationP39748305 edam:has_input signature:MF_00614 ;
rdf:type edam:operation_0300 .
?targetMotifMatch306 faldo:location ?targetMotifMatchRegionMatch307 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00614309 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP39748MF_00614300 .
?targetMotifMatchRegionMatch307 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00614308 .
?targetMotifMatchRegionMatchBeginMF_00614308 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00614301 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00614309 edam:has_input signature:MF_00614 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagmeth) .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39748MF_00614298, 1, (STRLEN(?templateMotifCigarP39748MF_00614298) - STRLEN(REPLACE(?templateMotifCigarP39748MF_00614298, CONCAT('^(?:-*[^-]){', STR(((104 - ?templateMotifSequenceMatchBeginPositionP39748299) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1310) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39748MF_00614300, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614300) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614300, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1310), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39748MF_00614300, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614300) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614300, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1310), '}'), '')))), '[^-]', ''))) AS ?step2311) .
BIND(((?step2311 + ?targetMotifMatchRegionMatchBeginPositionMF_00614301) - 1) AS ?thisPositionOn74) .
BIND(?thisPositionOn74 AS ?thisPositionOn75) .
BIND(?this AS ?pfs4t312) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn74))) AS ?pfsb72) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn75))) AS ?pfse73) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn74, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_03140a71')) AS ?annotation71) .
BIND(?this AS ?pfs70) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch317 faldo:location ?templateMotifSequenceMatchRegionP39748318 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP39748320 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP39748MF_00614313 .
?templateMotifSequenceMatchRegionP39748318 faldo:begin ?templateMotifSequenceMatchBeginP39748319 .
?templateMotifSequenceMatchBeginP39748319 faldo:position ?templateMotifSequenceMatchBeginPositionP39748314 ;
faldo:reference isoform:P39748-1 .
?templateMotifSequenceProfileAlignmentOperationP39748320 edam:has_input signature:MF_00614 ;
rdf:type edam:operation_0300 .
?targetMotifMatch321 faldo:location ?targetMotifMatchRegionMatch322 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00614324 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP39748MF_00614315 .
?targetMotifMatchRegionMatch322 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00614323 .
?targetMotifMatchRegionMatchBeginMF_00614323 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00614316 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00614324 edam:has_input signature:MF_00614 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39748MF_00614313, 1, (STRLEN(?templateMotifCigarP39748MF_00614313) - STRLEN(REPLACE(?templateMotifCigarP39748MF_00614313, CONCAT('^(?:-*[^-]){', STR(((1 - ?templateMotifSequenceMatchBeginPositionP39748314) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1325) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39748MF_00614315, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614315) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614315, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1325), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39748MF_00614315, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614315) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614315, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1325), '}'), '')))), '[^-]', ''))) AS ?step2326) .
BIND(((?step2326 + ?targetMotifMatchRegionMatchBeginPositionMF_00614316) - 1) AS ?thisPositionOn80) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39748MF_00614313, 1, (STRLEN(?templateMotifCigarP39748MF_00614313) - STRLEN(REPLACE(?templateMotifCigarP39748MF_00614313, CONCAT('^(?:-*[^-]){', STR(((104 - ?templateMotifSequenceMatchBeginPositionP39748314) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1327) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39748MF_00614315, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614315) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614315, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1327), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39748MF_00614315, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614315) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614315, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1327), '}'), '')))), '[^-]', ''))) AS ?step2328) .
BIND(((?step2328 + ?targetMotifMatchRegionMatchBeginPositionMF_00614316) - 1) AS ?thisPositionOn81) .
BIND(?this AS ?pfs5t329) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn80))) AS ?pfsb78) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn81))) AS ?pfse79) .
FILTER ((BOUND(?thisPositionOn80) && BOUND(?thisPositionOn81))) .
BIND(URI(CONCAT(STR(?this), '#MF_03140a77')) AS ?annotation77) .
BIND(?this AS ?pfs76) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch334 faldo:location ?templateMotifSequenceMatchRegionP39748335 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP39748337 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP39748MF_00614330 .
?templateMotifSequenceMatchRegionP39748335 faldo:begin ?templateMotifSequenceMatchBeginP39748336 .
?templateMotifSequenceMatchBeginP39748336 faldo:position ?templateMotifSequenceMatchBeginPositionP39748331 ;
faldo:reference isoform:P39748-1 .
?templateMotifSequenceProfileAlignmentOperationP39748337 edam:has_input signature:MF_00614 ;
rdf:type edam:operation_0300 .
?targetMotifMatch338 faldo:location ?targetMotifMatchRegionMatch339 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00614341 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP39748MF_00614332 .
?targetMotifMatchRegionMatch339 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00614340 .
?targetMotifMatchRegionMatchBeginMF_00614340 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00614333 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00614341 edam:has_input signature:MF_00614 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39748MF_00614330, 1, (STRLEN(?templateMotifCigarP39748MF_00614330) - STRLEN(REPLACE(?templateMotifCigarP39748MF_00614330, CONCAT('^(?:-*[^-]){', STR(((122 - ?templateMotifSequenceMatchBeginPositionP39748331) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1342) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39748MF_00614332, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614332) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614332, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1342), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39748MF_00614332, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614332) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614332, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1342), '}'), '')))), '[^-]', ''))) AS ?step2343) .
BIND(((?step2343 + ?targetMotifMatchRegionMatchBeginPositionMF_00614333) - 1) AS ?thisPositionOn86) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39748MF_00614330, 1, (STRLEN(?templateMotifCigarP39748MF_00614330) - STRLEN(REPLACE(?templateMotifCigarP39748MF_00614330, CONCAT('^(?:-*[^-]){', STR(((253 - ?templateMotifSequenceMatchBeginPositionP39748331) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1344) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39748MF_00614332, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614332) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614332, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1344), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39748MF_00614332, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614332) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614332, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1344), '}'), '')))), '[^-]', ''))) AS ?step2345) .
BIND(((?step2345 + ?targetMotifMatchRegionMatchBeginPositionMF_00614333) - 1) AS ?thisPositionOn87) .
BIND(?this AS ?pfs5t346) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn86))) AS ?pfsb84) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn87))) AS ?pfse85) .
FILTER ((BOUND(?thisPositionOn86) && BOUND(?thisPositionOn87))) .
BIND(URI(CONCAT(STR(?this), '#MF_03140a83')) AS ?annotation83) .
BIND(?this AS ?pfs82) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch351 faldo:location ?templateMotifSequenceMatchRegionP39748352 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP39748354 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP39748MF_00614347 .
?templateMotifSequenceMatchRegionP39748352 faldo:begin ?templateMotifSequenceMatchBeginP39748353 .
?templateMotifSequenceMatchBeginP39748353 faldo:position ?templateMotifSequenceMatchBeginPositionP39748348 ;
faldo:reference isoform:P39748-1 .
?templateMotifSequenceProfileAlignmentOperationP39748354 edam:has_input signature:MF_00614 ;
rdf:type edam:operation_0300 .
?targetMotifMatch355 faldo:location ?targetMotifMatchRegionMatch356 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00614358 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP39748MF_00614349 .
?targetMotifMatchRegionMatch356 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00614357 .
?targetMotifMatchRegionMatchBeginMF_00614357 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00614350 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00614358 edam:has_input signature:MF_00614 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39748MF_00614347, 1, (STRLEN(?templateMotifCigarP39748MF_00614347) - STRLEN(REPLACE(?templateMotifCigarP39748MF_00614347, CONCAT('^(?:-*[^-]){', STR(((336 - ?templateMotifSequenceMatchBeginPositionP39748348) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1359) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39748MF_00614349, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614349) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614349, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1359), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39748MF_00614349, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614349) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614349, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1359), '}'), '')))), '[^-]', ''))) AS ?step2360) .
BIND(((?step2360 + ?targetMotifMatchRegionMatchBeginPositionMF_00614350) - 1) AS ?thisPositionOn92) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39748MF_00614347, 1, (STRLEN(?templateMotifCigarP39748MF_00614347) - STRLEN(REPLACE(?templateMotifCigarP39748MF_00614347, CONCAT('^(?:-*[^-]){', STR(((344 - ?templateMotifSequenceMatchBeginPositionP39748348) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1361) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39748MF_00614349, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614349) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614349, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1361), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39748MF_00614349, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614349) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614349, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1361), '}'), '')))), '[^-]', ''))) AS ?step2362) .
BIND(((?step2362 + ?targetMotifMatchRegionMatchBeginPositionMF_00614350) - 1) AS ?thisPositionOn93) .
BIND(?this AS ?pfs5t363) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn92))) AS ?pfsb90) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn93))) AS ?pfse91) .
FILTER (REGEX('[ARNDCQEGHILKMFPSTWYVBZJUOX]Q[ARNDCQEGHILKMFPSTWYVBZJUOX]{2)[ILM][ARNDCQEGHILKMFPSTWYVBZJUOX]{2)F[FYLI]', SUBSTR(?thisSequenceValue, ?thisPositionOn92, (?thisPositionOn93 - ?thisPositionOn92)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03140a89')) AS ?annotation89) .
BIND(?this AS ?pfs88) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch368 faldo:location ?templateMotifSequenceMatchRegionP39748369 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP39748371 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP39748MF_00614364 .
?templateMotifSequenceMatchRegionP39748369 faldo:begin ?templateMotifSequenceMatchBeginP39748370 .
?templateMotifSequenceMatchBeginP39748370 faldo:position ?templateMotifSequenceMatchBeginPositionP39748365 ;
faldo:reference isoform:P39748-1 .
?templateMotifSequenceProfileAlignmentOperationP39748371 edam:has_input signature:MF_00614 ;
rdf:type edam:operation_0300 .
?targetMotifMatch372 faldo:location ?targetMotifMatchRegionMatch373 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00614375 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP39748MF_00614366 .
?targetMotifMatchRegionMatch373 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00614374 .
?targetMotifMatchRegionMatchBeginMF_00614374 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00614367 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00614375 edam:has_input signature:MF_00614 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39748MF_00614364, 1, (STRLEN(?templateMotifCigarP39748MF_00614364) - STRLEN(REPLACE(?templateMotifCigarP39748MF_00614364, CONCAT('^(?:-*[^-]){', STR(((34 - ?templateMotifSequenceMatchBeginPositionP39748365) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1376) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39748MF_00614366, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614366) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614366, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1376), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39748MF_00614366, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614366) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614366, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1376), '}'), '')))), '[^-]', ''))) AS ?step2377) .
BIND(((?step2377 + ?targetMotifMatchRegionMatchBeginPositionMF_00614367) - 1) AS ?thisPositionOn99) .
BIND(?thisPositionOn99 AS ?thisPositionOn100) .
BIND(?this AS ?pfs5t378) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn99))) AS ?pfsb96) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn100))) AS ?pfse97) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn99, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_03140a95')) AS ?annotation95) .
BIND(?this AS ?pfs94) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch383 faldo:location ?templateMotifSequenceMatchRegionP39748384 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP39748386 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP39748MF_00614379 .
?templateMotifSequenceMatchRegionP39748384 faldo:begin ?templateMotifSequenceMatchBeginP39748385 .
?templateMotifSequenceMatchBeginP39748385 faldo:position ?templateMotifSequenceMatchBeginPositionP39748380 ;
faldo:reference isoform:P39748-1 .
?templateMotifSequenceProfileAlignmentOperationP39748386 edam:has_input signature:MF_00614 ;
rdf:type edam:operation_0300 .
?targetMotifMatch387 faldo:location ?targetMotifMatchRegionMatch388 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00614390 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP39748MF_00614381 .
?targetMotifMatchRegionMatch388 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00614389 .
?targetMotifMatchRegionMatchBeginMF_00614389 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00614382 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00614390 edam:has_input signature:MF_00614 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39748MF_00614379, 1, (STRLEN(?templateMotifCigarP39748MF_00614379) - STRLEN(REPLACE(?templateMotifCigarP39748MF_00614379, CONCAT('^(?:-*[^-]){', STR(((86 - ?templateMotifSequenceMatchBeginPositionP39748380) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1391) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39748MF_00614381, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614381) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614381, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1391), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39748MF_00614381, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614381) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614381, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1391), '}'), '')))), '[^-]', ''))) AS ?step2392) .
BIND(((?step2392 + ?targetMotifMatchRegionMatchBeginPositionMF_00614382) - 1) AS ?thisPositionOn106) .
BIND(?thisPositionOn106 AS ?thisPositionOn107) .
BIND(?this AS ?pfs5t393) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn106))) AS ?pfsb103) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn107))) AS ?pfse104) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn106, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_03140a102')) AS ?annotation102) .
BIND(?this AS ?pfs101) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch398 faldo:location ?templateMotifSequenceMatchRegionP39748399 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP39748401 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP39748MF_00614394 .
?templateMotifSequenceMatchRegionP39748399 faldo:begin ?templateMotifSequenceMatchBeginP39748400 .
?templateMotifSequenceMatchBeginP39748400 faldo:position ?templateMotifSequenceMatchBeginPositionP39748395 ;
faldo:reference isoform:P39748-1 .
?templateMotifSequenceProfileAlignmentOperationP39748401 edam:has_input signature:MF_00614 ;
rdf:type edam:operation_0300 .
?targetMotifMatch402 faldo:location ?targetMotifMatchRegionMatch403 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00614405 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP39748MF_00614396 .
?targetMotifMatchRegionMatch403 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00614404 .
?targetMotifMatchRegionMatchBeginMF_00614404 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00614397 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00614405 edam:has_input signature:MF_00614 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39748MF_00614394, 1, (STRLEN(?templateMotifCigarP39748MF_00614394) - STRLEN(REPLACE(?templateMotifCigarP39748MF_00614394, CONCAT('^(?:-*[^-]){', STR(((158 - ?templateMotifSequenceMatchBeginPositionP39748395) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1406) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39748MF_00614396, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614396) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614396, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1406), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39748MF_00614396, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614396) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614396, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1406), '}'), '')))), '[^-]', ''))) AS ?step2407) .
BIND(((?step2407 + ?targetMotifMatchRegionMatchBeginPositionMF_00614397) - 1) AS ?thisPositionOn113) .
BIND(?thisPositionOn113 AS ?thisPositionOn114) .
BIND(?this AS ?pfs5t408) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn113))) AS ?pfsb110) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn114))) AS ?pfse111) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn113, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_03140a109')) AS ?annotation109) .
BIND(?this AS ?pfs108) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch413 faldo:location ?templateMotifSequenceMatchRegionP39748414 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP39748416 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP39748MF_00614409 .
?templateMotifSequenceMatchRegionP39748414 faldo:begin ?templateMotifSequenceMatchBeginP39748415 .
?templateMotifSequenceMatchBeginP39748415 faldo:position ?templateMotifSequenceMatchBeginPositionP39748410 ;
faldo:reference isoform:P39748-1 .
?templateMotifSequenceProfileAlignmentOperationP39748416 edam:has_input signature:MF_00614 ;
rdf:type edam:operation_0300 .
?targetMotifMatch417 faldo:location ?targetMotifMatchRegionMatch418 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00614420 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP39748MF_00614411 .
?targetMotifMatchRegionMatch418 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00614419 .
?targetMotifMatchRegionMatchBeginMF_00614419 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00614412 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00614420 edam:has_input signature:MF_00614 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39748MF_00614409, 1, (STRLEN(?templateMotifCigarP39748MF_00614409) - STRLEN(REPLACE(?templateMotifCigarP39748MF_00614409, CONCAT('^(?:-*[^-]){', STR(((160 - ?templateMotifSequenceMatchBeginPositionP39748410) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1421) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39748MF_00614411, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614411) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614411, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1421), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39748MF_00614411, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614411) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614411, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1421), '}'), '')))), '[^-]', ''))) AS ?step2422) .
BIND(((?step2422 + ?targetMotifMatchRegionMatchBeginPositionMF_00614412) - 1) AS ?thisPositionOn120) .
BIND(?thisPositionOn120 AS ?thisPositionOn121) .
BIND(?this AS ?pfs5t423) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn120))) AS ?pfsb117) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn121))) AS ?pfse118) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn120, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_03140a116')) AS ?annotation116) .
BIND(?this AS ?pfs115) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch428 faldo:location ?templateMotifSequenceMatchRegionP39748429 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP39748431 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP39748MF_00614424 .
?templateMotifSequenceMatchRegionP39748429 faldo:begin ?templateMotifSequenceMatchBeginP39748430 .
?templateMotifSequenceMatchBeginP39748430 faldo:position ?templateMotifSequenceMatchBeginPositionP39748425 ;
faldo:reference isoform:P39748-1 .
?templateMotifSequenceProfileAlignmentOperationP39748431 edam:has_input signature:MF_00614 ;
rdf:type edam:operation_0300 .
?targetMotifMatch432 faldo:location ?targetMotifMatchRegionMatch433 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00614435 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP39748MF_00614426 .
?targetMotifMatchRegionMatch433 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00614434 .
?targetMotifMatchRegionMatchBeginMF_00614434 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00614427 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00614435 edam:has_input signature:MF_00614 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39748MF_00614424, 1, (STRLEN(?templateMotifCigarP39748MF_00614424) - STRLEN(REPLACE(?templateMotifCigarP39748MF_00614424, CONCAT('^(?:-*[^-]){', STR(((179 - ?templateMotifSequenceMatchBeginPositionP39748425) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1436) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39748MF_00614426, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614426) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614426, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1436), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39748MF_00614426, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614426) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614426, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1436), '}'), '')))), '[^-]', ''))) AS ?step2437) .
BIND(((?step2437 + ?targetMotifMatchRegionMatchBeginPositionMF_00614427) - 1) AS ?thisPositionOn127) .
BIND(?thisPositionOn127 AS ?thisPositionOn128) .
BIND(?this AS ?pfs5t438) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn127))) AS ?pfsb124) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn128))) AS ?pfse125) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn127, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_03140a123')) AS ?annotation123) .
BIND(?this AS ?pfs122) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch443 faldo:location ?templateMotifSequenceMatchRegionP39748444 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP39748446 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP39748MF_00614439 .
?templateMotifSequenceMatchRegionP39748444 faldo:begin ?templateMotifSequenceMatchBeginP39748445 .
?templateMotifSequenceMatchBeginP39748445 faldo:position ?templateMotifSequenceMatchBeginPositionP39748440 ;
faldo:reference isoform:P39748-1 .
?templateMotifSequenceProfileAlignmentOperationP39748446 edam:has_input signature:MF_00614 ;
rdf:type edam:operation_0300 .
?targetMotifMatch447 faldo:location ?targetMotifMatchRegionMatch448 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00614450 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP39748MF_00614441 .
?targetMotifMatchRegionMatch448 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00614449 .
?targetMotifMatchRegionMatchBeginMF_00614449 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00614442 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00614450 edam:has_input signature:MF_00614 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39748MF_00614439, 1, (STRLEN(?templateMotifCigarP39748MF_00614439) - STRLEN(REPLACE(?templateMotifCigarP39748MF_00614439, CONCAT('^(?:-*[^-]){', STR(((181 - ?templateMotifSequenceMatchBeginPositionP39748440) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1451) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39748MF_00614441, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614441) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614441, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1451), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39748MF_00614441, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614441) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614441, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1451), '}'), '')))), '[^-]', ''))) AS ?step2452) .
BIND(((?step2452 + ?targetMotifMatchRegionMatchBeginPositionMF_00614442) - 1) AS ?thisPositionOn134) .
BIND(?thisPositionOn134 AS ?thisPositionOn135) .
BIND(?this AS ?pfs5t453) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn134))) AS ?pfsb131) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn135))) AS ?pfse132) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn134, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_03140a130')) AS ?annotation130) .
BIND(?this AS ?pfs129) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch458 faldo:location ?templateMotifSequenceMatchRegionP39748459 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP39748461 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP39748MF_00614454 .
?templateMotifSequenceMatchRegionP39748459 faldo:begin ?templateMotifSequenceMatchBeginP39748460 .
?templateMotifSequenceMatchBeginP39748460 faldo:position ?templateMotifSequenceMatchBeginPositionP39748455 ;
faldo:reference isoform:P39748-1 .
?templateMotifSequenceProfileAlignmentOperationP39748461 edam:has_input signature:MF_00614 ;
rdf:type edam:operation_0300 .
?targetMotifMatch462 faldo:location ?targetMotifMatchRegionMatch463 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00614465 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP39748MF_00614456 .
?targetMotifMatchRegionMatch463 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00614464 .
?targetMotifMatchRegionMatchBeginMF_00614464 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00614457 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00614465 edam:has_input signature:MF_00614 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39748MF_00614454, 1, (STRLEN(?templateMotifCigarP39748MF_00614454) - STRLEN(REPLACE(?templateMotifCigarP39748MF_00614454, CONCAT('^(?:-*[^-]){', STR(((233 - ?templateMotifSequenceMatchBeginPositionP39748455) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1466) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39748MF_00614456, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614456) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614456, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1466), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39748MF_00614456, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614456) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614456, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1466), '}'), '')))), '[^-]', ''))) AS ?step2467) .
BIND(((?step2467 + ?targetMotifMatchRegionMatchBeginPositionMF_00614457) - 1) AS ?thisPositionOn141) .
BIND(?thisPositionOn141 AS ?thisPositionOn142) .
BIND(?this AS ?pfs5t468) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn141))) AS ?pfsb138) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn142))) AS ?pfse139) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn141, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_03140a137')) AS ?annotation137) .
BIND(?this AS ?pfs136) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch473 faldo:location ?templateMotifSequenceMatchRegionP39748474 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP39748476 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP39748MF_00614469 .
?templateMotifSequenceMatchRegionP39748474 faldo:begin ?templateMotifSequenceMatchBeginP39748475 .
?templateMotifSequenceMatchBeginP39748475 faldo:position ?templateMotifSequenceMatchBeginPositionP39748470 ;
faldo:reference isoform:P39748-1 .
?templateMotifSequenceProfileAlignmentOperationP39748476 edam:has_input signature:MF_00614 ;
rdf:type edam:operation_0300 .
?targetMotifMatch477 faldo:location ?targetMotifMatchRegionMatch478 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00614480 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP39748MF_00614471 .
?targetMotifMatchRegionMatch478 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00614479 .
?targetMotifMatchRegionMatchBeginMF_00614479 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00614472 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00614480 edam:has_input signature:MF_00614 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39748MF_00614469, 1, (STRLEN(?templateMotifCigarP39748MF_00614469) - STRLEN(REPLACE(?templateMotifCigarP39748MF_00614469, CONCAT('^(?:-*[^-]){', STR(((47 - ?templateMotifSequenceMatchBeginPositionP39748470) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1481) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39748MF_00614471, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614471) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614471, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1481), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39748MF_00614471, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614471) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614471, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1481), '}'), '')))), '[^-]', ''))) AS ?step2482) .
BIND(((?step2482 + ?targetMotifMatchRegionMatchBeginPositionMF_00614472) - 1) AS ?thisPositionOn148) .
BIND(?thisPositionOn148 AS ?thisPositionOn149) .
BIND(?this AS ?pfs5t483) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn148))) AS ?pfsb145) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn149))) AS ?pfse146) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn148, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_03140a144')) AS ?annotation144) .
BIND(?this AS ?pfs143) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch488 faldo:location ?templateMotifSequenceMatchRegionP39748489 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP39748491 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP39748MF_00614484 .
?templateMotifSequenceMatchRegionP39748489 faldo:begin ?templateMotifSequenceMatchBeginP39748490 .
?templateMotifSequenceMatchBeginP39748490 faldo:position ?templateMotifSequenceMatchBeginPositionP39748485 ;
faldo:reference isoform:P39748-1 .
?templateMotifSequenceProfileAlignmentOperationP39748491 edam:has_input signature:MF_00614 ;
rdf:type edam:operation_0300 .
?targetMotifMatch492 faldo:location ?targetMotifMatchRegionMatch493 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00614495 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP39748MF_00614486 .
?targetMotifMatchRegionMatch493 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00614494 .
?targetMotifMatchRegionMatchBeginMF_00614494 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00614487 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00614495 edam:has_input signature:MF_00614 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39748MF_00614484, 1, (STRLEN(?templateMotifCigarP39748MF_00614484) - STRLEN(REPLACE(?templateMotifCigarP39748MF_00614484, CONCAT('^(?:-*[^-]){', STR(((70 - ?templateMotifSequenceMatchBeginPositionP39748485) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1496) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39748MF_00614486, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614486) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614486, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1496), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39748MF_00614486, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614486) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614486, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1496), '}'), '')))), '[^-]', ''))) AS ?step2497) .
BIND(((?step2497 + ?targetMotifMatchRegionMatchBeginPositionMF_00614487) - 1) AS ?thisPositionOn155) .
BIND(?thisPositionOn155 AS ?thisPositionOn156) .
BIND(?this AS ?pfs5t498) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn155))) AS ?pfsb152) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn156))) AS ?pfse153) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn155, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_03140a151')) AS ?annotation151) .
BIND(?this AS ?pfs150) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch503 faldo:location ?templateMotifSequenceMatchRegionP39748504 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP39748506 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP39748MF_00614499 .
?templateMotifSequenceMatchRegionP39748504 faldo:begin ?templateMotifSequenceMatchBeginP39748505 .
?templateMotifSequenceMatchBeginP39748505 faldo:position ?templateMotifSequenceMatchBeginPositionP39748500 ;
faldo:reference isoform:P39748-1 .
?templateMotifSequenceProfileAlignmentOperationP39748506 edam:has_input signature:MF_00614 ;
rdf:type edam:operation_0300 .
?targetMotifMatch507 faldo:location ?targetMotifMatchRegionMatch508 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00614510 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP39748MF_00614501 .
?targetMotifMatchRegionMatch508 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00614509 .
?targetMotifMatchRegionMatchBeginMF_00614509 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00614502 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00614510 edam:has_input signature:MF_00614 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39748MF_00614499, 1, (STRLEN(?templateMotifCigarP39748MF_00614499) - STRLEN(REPLACE(?templateMotifCigarP39748MF_00614499, CONCAT('^(?:-*[^-]){', STR(((158 - ?templateMotifSequenceMatchBeginPositionP39748500) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1511) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39748MF_00614501, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614501) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614501, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1511), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39748MF_00614501, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614501) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614501, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1511), '}'), '')))), '[^-]', ''))) AS ?step2512) .
BIND(((?step2512 + ?targetMotifMatchRegionMatchBeginPositionMF_00614502) - 1) AS ?thisPositionOn162) .
BIND(?thisPositionOn162 AS ?thisPositionOn163) .
BIND(?this AS ?pfs5t513) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn162))) AS ?pfsb159) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn163))) AS ?pfse160) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn162, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_03140a158')) AS ?annotation158) .
BIND(?this AS ?pfs157) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch518 faldo:location ?templateMotifSequenceMatchRegionP39748519 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP39748521 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP39748MF_00614514 .
?templateMotifSequenceMatchRegionP39748519 faldo:begin ?templateMotifSequenceMatchBeginP39748520 .
?templateMotifSequenceMatchBeginP39748520 faldo:position ?templateMotifSequenceMatchBeginPositionP39748515 ;
faldo:reference isoform:P39748-1 .
?templateMotifSequenceProfileAlignmentOperationP39748521 edam:has_input signature:MF_00614 ;
rdf:type edam:operation_0300 .
?targetMotifMatch522 faldo:location ?targetMotifMatchRegionMatch523 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00614525 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP39748MF_00614516 .
?targetMotifMatchRegionMatch523 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00614524 .
?targetMotifMatchRegionMatchBeginMF_00614524 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00614517 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00614525 edam:has_input signature:MF_00614 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39748MF_00614514, 1, (STRLEN(?templateMotifCigarP39748MF_00614514) - STRLEN(REPLACE(?templateMotifCigarP39748MF_00614514, CONCAT('^(?:-*[^-]){', STR(((231 - ?templateMotifSequenceMatchBeginPositionP39748515) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1526) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39748MF_00614516, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614516) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614516, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1526), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39748MF_00614516, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614516) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614516, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1526), '}'), '')))), '[^-]', ''))) AS ?step2527) .
BIND(((?step2527 + ?targetMotifMatchRegionMatchBeginPositionMF_00614517) - 1) AS ?thisPositionOn169) .
BIND(?thisPositionOn169 AS ?thisPositionOn170) .
BIND(?this AS ?pfs5t528) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn169))) AS ?pfsb166) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn170))) AS ?pfse167) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn169, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_03140a165')) AS ?annotation165) .
BIND(?this AS ?pfs164) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch533 faldo:location ?templateMotifSequenceMatchRegionP39748534 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP39748536 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP39748MF_00614529 .
?templateMotifSequenceMatchRegionP39748534 faldo:begin ?templateMotifSequenceMatchBeginP39748535 .
?templateMotifSequenceMatchBeginP39748535 faldo:position ?templateMotifSequenceMatchBeginPositionP39748530 ;
faldo:reference isoform:P39748-1 .
?templateMotifSequenceProfileAlignmentOperationP39748536 edam:has_input signature:MF_00614 ;
rdf:type edam:operation_0300 .
?targetMotifMatch537 faldo:location ?targetMotifMatchRegionMatch538 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00614540 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP39748MF_00614531 .
?targetMotifMatchRegionMatch538 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00614539 .
?targetMotifMatchRegionMatchBeginMF_00614539 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00614532 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00614540 edam:has_input signature:MF_00614 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39748MF_00614529, 1, (STRLEN(?templateMotifCigarP39748MF_00614529) - STRLEN(REPLACE(?templateMotifCigarP39748MF_00614529, CONCAT('^(?:-*[^-]){', STR(((233 - ?templateMotifSequenceMatchBeginPositionP39748530) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1541) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39748MF_00614531, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614531) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614531, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1541), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39748MF_00614531, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614531) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614531, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1541), '}'), '')))), '[^-]', ''))) AS ?step2542) .
BIND(((?step2542 + ?targetMotifMatchRegionMatchBeginPositionMF_00614532) - 1) AS ?thisPositionOn176) .
BIND(?thisPositionOn176 AS ?thisPositionOn177) .
BIND(?this AS ?pfs5t543) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn176))) AS ?pfsb173) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn177))) AS ?pfse174) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn176, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_03140a172')) AS ?annotation172) .
BIND(?this AS ?pfs171) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag544) .
}
BIND(IF(BOUND(?tagmeth), ?caseWithTag544, ?UNBOUND_VARIABLE) AS ?case9) .
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag545) .
}
BIND(IF(BOUND(?tagacet), ?caseWithTag545, ?UNBOUND_VARIABLE) AS ?case10) .
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(?this AS ?case11) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:6656 .
BIND(?this AS ?case12) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:33083 .
BIND(?this AS ?case13) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:6237 .
BIND(?this AS ?case14) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:40674 .
})) .
BIND(?this AS ?case15) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:4895 .
BIND(?this AS ?case16) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(?this AS ?caseWithTag546) .
}
BIND(IF(BOUND(?tagphospho187), ?caseWithTag546, ?UNBOUND_VARIABLE) AS ?case17) .
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:40674 .
})) .
BIND(?this AS ?caseWithTag547) .
}
BIND(IF(BOUND(?tagphospho187), ?caseWithTag547, ?UNBOUND_VARIABLE) AS ?case18) .
OPTIONAL {
?this a up:Protein .
VALUES ?supertaxon548 {taxon:4930 taxon:5475}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon548 .
BIND(?this AS ?case19) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(?this AS ?caseWithTag549) .
}
BIND(IF((BOUND(?tagphospho187) || BOUND(?tagmeth192)), ?caseWithTag549, ?UNBOUND_VARIABLE) AS ?case20) .
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
VALUES ?supertaxon550 {taxon:4930 taxon:33083 taxon:6237 taxon:4895 taxon:6656 taxon:5475}
?thisOrganism rdfs:subClassOf+ ?supertaxon550 .
})) .
BIND(?this AS ?case21) .
}
}
"xsd:string |
