| http://purl.uniprot.org/unirules/MF_04048#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:912769 up:source unirule:MF_04048 .
_:912770 up:fullName 'pVIn' ;
rdf:type up:Structured_Name .
_:912771 up:source unirule:MF_04048 .
_:912772 up:fullName 'Endosome lysis protein' ;
rdf:type up:Structured_Name .
_:912773 up:fullName 'Mature protein VI' ;
rdf:type up:Structured_Name .
_:912774 up:source unirule:MF_04048 .
_:912775 up:fullName 'Protease cofactor' ;
rdf:type up:Structured_Name .
_:912776 up:fullName 'pVI-C' ;
rdf:type up:Structured_Name .
_:912777 up:source unirule:MF_04048 .
_:912778 up:source unirule:MF_04048 .
_:912779 up:source unirule:MF_04048 .
_:912780 up:source unirule:MF_04048 .
_:912781 up:source unirule:MF_04048 .
_:912782 up:source unirule:MF_04048 .
_:912783 up:source unirule:MF_04048 .
_:912784 up:source unirule:MF_04048 .
_:912785 up:source unirule:MF_04048 .
_:912786 up:source unirule:MF_04048 .
_:912787 up:source unirule:MF_04048 .
_:912788 up:source unirule:MF_04048 .
_:912789 up:source unirule:MF_04048 .
_:912790 up:source unirule:MF_04048 .
_:912791 up:source unirule:MF_04048 .
_:912792 up:source unirule:MF_04048 .
_:912793 up:source unirule:MF_04048 .
_:912794 up:source unirule:MF_04048 .
_:912795 up:source unirule:MF_04048 .
_:912796 up:source unirule:MF_04048 .
_:912797 up:source unirule:MF_04048 .
_:912798 up:source unirule:MF_04048 .
_:912799 up:source unirule:MF_04048 .
_:912800 up:source unirule:MF_04048 .
_:912801 up:source unirule:MF_04048 .
_:912802 up:source unirule:MF_04048 .
_:912803 up:source unirule:MF_04048 .
_:912804 up:source unirule:MF_04048 .
_:912805 up:source unirule:MF_04048 .
_:912806 up:source unirule:MF_04048 .
_:912807 up:source unirule:MF_04048 .
_:912808 up:source unirule:MF_04048 .
_:912809 up:source unirule:MF_04048 .
_:912810 up:source unirule:MF_04048 .
_:912811 up:source unirule:MF_04048 .
_:912812 up:source unirule:MF_04048 .
_:912813 up:source unirule:MF_04048 .
_:912814 up:source unirule:MF_04048 .
_:912815 up:source unirule:MF_04048 .
_:912816 up:source unirule:MF_04048 .
_:912817 up:source unirule:MF_04048 .
_:912818 up:source unirule:MF_04048 .
_:912819 up:source unirule:MF_04048 .
_:912820 up:source unirule:MF_04048 .
_:912821 up:source unirule:MF_04048 .
_:912822 up:source unirule:MF_04048 .
_:912823 up:source unirule:MF_04048 .
_:912824 up:source unirule:MF_04048 .
_:912825 up:source unirule:MF_04048 .
_:912826 up:source unirule:MF_04048 .
_:912827 up:source unirule:MF_04048 .
_:912828 up:source unirule:MF_04048 .
_:912829 up:source unirule:MF_04048 .
_:912830 up:source unirule:MF_04048 .
_:912831 up:source unirule:MF_04048 .
_:912832 up:source unirule:MF_04048 .
_:912833 up:source unirule:MF_04048 .
_:912834 up:source unirule:MF_04048 .
_:912835 up:source unirule:MF_04048 .
_:912836 up:source unirule:MF_04048 .
?this up:annotation ?annotation5 ,
?annotation6 ,
?annotation7 ,
?annotation8 ,
?annotation9 ,
?annotation10 ,
?annotation11 ,
?annotation14 ,
?annotation16 ,
?annotation18 ,
?annotation19 ,
?annotation20 ,
?annotation21 ,
?annotation22 ,
?annotation23 ,
?annotation24 ;
up:classifiedWith GO:0019028 ,
GO:0019076 ,
GO:0030430 ,
GO:0039664 ,
GO:0042025 ,
GO:0046729 ,
GO:0075521 ,
keyword:1015 ,
keyword:1035 ,
keyword:1048 ,
keyword:1160 ,
keyword:1162 ,
keyword:1174 ,
keyword:1176 ,
keyword:1177 ,
keyword:1188 ,
keyword:118 ,
keyword:167 ,
keyword:426 ,
keyword:597 ,
keyword:832 ,
keyword:945 ,
keyword:946 ;
up:component ?namedpart1 ,
?namedpart2 ,
?namedpart3 ;
up:recommendedName ?name0 .
?name0 up:fullName 'Pre-protein VI' ;
up:shortName 'pVI' ;
rdf:type up:Structured_Name .
?namedpart1 up:recommendedName _:912770 .
?namedpart2 up:alternativeName _:912773 ;
up:recommendedName _:912772 .
?namedpart3 up:alternativeName _:912776 ;
up:recommendedName _:912775 .
?gene4 skos:prefLabel 'L3' .
?annotation5 a up:Function_Annotation ;
rdfs:comment '[Pre-protein VI]: During virus assembly, promotes hexon trimers nuclear import through nuclear pore complexes via an importin alpha/beta-dependent mechanism. By analogy to herpesviruses capsid assembly, might act as a chaperone to promote the formation of the icosahedral capsid.' .
?annotation6 a up:Function_Annotation ;
rdfs:comment '[Endosome lysis protein]: Structural component of the virion that provides increased stability to the particle shell through its interaction with the core-capsid bridging protein and the hexon-linking protein VIII. Fibers shedding during virus entry into host cell allows the endosome lysis protein to be exposed as a membrane-lytic peptide. Exhibits pH-independent membrane fragmentation activity and probably mediates viral rapid escape from host endosome via organellar membrane lysis. It is not clear if it then remains partially associated with the capsid and involved in the intracellular microtubule-dependent transport of capsid to the nucleus, or if it is lost during endosomal penetration.' .
?annotation7 a up:Function_Annotation ;
rdfs:comment '[Protease cofactor]: Cofactor that activates the viral protease. Binds to viral protease in a 1:1 ratio.' .
?annotation8 a up:Subunit_Annotation ;
rdfs:comment '[Pre-protein VI]: Interacts with hexon protein; this interaction allows nuclear import of hexon trimers and possibly pre-capsid assembly. Interacts (via C-terminal NLS) with importin alpha/beta.' .
?annotation9 a up:Subunit_Annotation ;
rdfs:comment '[Endosome lysis protein]: Interacts (via PPxY motif) with host NEDD4 ubiquitine ligase; this interaction might play a role in virus intracellular transport during entry. Part of a complex composed of the core-capsid bridging protein, the endosome lysis protein VI and the hexon-linking protein VIII; these interactions bridge the virus core to the capsid. Interacts with peripentonal hexons; this interaction stabilizes the capsid by gluing two peripentonal hexons together and joining them with an adjacent group-of-nine hexon.' .
?annotation10 a up:Subunit_Annotation ;
rdfs:comment '[Protease cofactor]: Heterodimer with the viral protease; disulfide-linked. Interacts with the viral protease.' .
?annotation11 a up:Subcellular_Location_Annotation ;
rdfs:comment 'Shuttles between host cytoplasm and nucleus' .
?annotation11li12 up:cellularComponent .
?annotation11li13 up:cellularComponent .
?annotation14 a up:Subcellular_Location_Annotation ;
rdfs:comment 'Located on the inner side of the capsid shell. Associates with the inner cavities of hexons on the capsid interior' .
?annotation14li15 up:cellularComponent .
?annotation16 a up:Subcellular_Location_Annotation ;
rdfs:comment 'Located on the inner side of the capsid shell. Associates with the base of each peripentonal hexon on the capsid interior. Present in around 360 copies per virion' .
?annotation16li17 up:cellularComponent .
?annotation18 a up:Induction_Annotation ;
rdfs:comment 'Expressed in the late phase of the viral replicative cycle.' .
?annotation19 a up:Domain_Annotation ;
rdfs:comment 'N-terminal amphipathic alpha-helix domain is essential for the membrane lytic activity.' .
?annotation20 a up:Domain_Annotation ;
rdfs:comment '[Endosome lysis protein]: Late-budding domains (L domains) are short sequence motifs essential for viral particle release. They can occur individually or in close proximity within structural proteins. They interacts with sorting cellular proteins of the multivesicular body (MVB) pathway. Most of these proteins are class E vacuolar protein sorting factors belonging to ESCRT-I, ESCRT-II or ESCRT-III complexes. Minor capsid protein 6 contains one L domain: a PPXY motif which binds to the WW domains of HECT (homologous to E6-AP C-terminus) E3 ubiquitin ligases, like NEDD4. In adenoviruses, this motif seems to play a role in microtubule-dependent intracellular trafficking toward the nucleus during virus entry into host cell and in suppression of DAXX-mediated repression of the immediate early E1A promoter.' .
?annotation21 a up:PTM_Annotation ;
rdfs:comment 'Ubiquitinated by Nedd4 following partial capsid disassembly; which might play a role in intracellular virus movement during entry.' .
?annotation22 a up:PTM_Annotation ;
rdfs:comment '[Protease cofactor]: Contains the major nuclear import and export signals. Proteolytically removed during virion maturation. The processing of the C-terminus turns the precursor into a mature viral structural protein and abrogates its ability to promote hexon import and act as a potential chaperone protein.' .
?annotation23 a up:Annotation ;
rdfs:comment 'All late proteins expressed from the major late promoter are produced by alternative splicing and alternative polyadenylation of the same gene giving rise to non-overlapping ORFs. A leader sequence is present in the N-terminus of all these mRNAs and is recognized by the viral shutoff protein to provide expression although conventional translation via ribosome scanning from the cap has been shut off in the host cell.' .
?annotation24 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the adenoviridae protein VI family.' .
?pfs25 up:annotation ?annotation26 .
?annotation26 faldo:begin ?pfsb27 ;
faldo:end ?pfse28 ;
rdf:type up:Chain_Annotation ;
rdfs:comment 'Pre-protein VI' .
?pfsb27 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?pfse28 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?pfs31 up:annotation ?annotation32 .
?annotation32 faldo:begin ?pfsb33 ;
faldo:end ?pfse34 ;
rdf:type up:Peptide_Annotation ;
rdfs:comment 'pVIn' .
?pfsb33 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?pfse34 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?pfs37 up:annotation ?annotation38 .
?annotation38 faldo:begin ?pfsb39 ;
faldo:end ?pfse40 ;
rdf:type up:Chain_Annotation ;
rdfs:comment 'Endosome lysis protein' .
?pfsb39 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?pfse40 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?pfs43 up:annotation ?annotation44 .
?annotation44 faldo:begin ?pfsb45 ;
faldo:end ?pfse46 ;
rdf:type up:Chain_Annotation ;
rdfs:comment 'Protease cofactor' .
?pfsb45 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?pfse46 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?pfs49 up:annotation ?annotation50 .
?annotation50 faldo:begin ?pfsb51 ;
faldo:end ?pfse52 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Amphipathic alpha-helix essential for membrane lytic activity' .
?pfsb51 faldo:position ?thisPositionOn53 ;
rdf:type faldo:ExactPosition .
?pfse52 faldo:position ?thisPositionOn54 ;
rdf:type faldo:ExactPosition .
?pfs55 up:annotation ?annotation56 .
?annotation56 faldo:begin ?pfsb57 ;
faldo:end ?pfse58 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Involved in endosomal membrane lysis' .
?pfsb57 faldo:position ?thisPositionOn59 ;
rdf:type faldo:ExactPosition .
?pfse58 faldo:position ?thisPositionOn60 ;
rdf:type faldo:ExactPosition .
?pfs61 up:annotation ?annotation62 .
?annotation62 faldo:begin ?pfsb63 ;
faldo:end ?pfse64 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Interaction with hexon protein' .
?pfsb63 faldo:position ?thisPositionOn65 ;
rdf:type faldo:ExactPosition .
?pfse64 faldo:position ?thisPositionOn66 ;
rdf:type faldo:ExactPosition .
?pfs67 up:annotation ?annotation68 .
?annotation68 faldo:begin ?pfsb69 ;
faldo:end ?pfse70 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Interaction with hexon protein' .
?pfsb69 faldo:position ?thisPositionOn71 ;
rdf:type faldo:ExactPosition .
?pfse70 faldo:position ?thisPositionOn72 ;
rdf:type faldo:ExactPosition .
?pfs73 up:annotation ?annotation74 .
?annotation74 faldo:begin ?pfsb75 ;
faldo:end ?pfse76 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Binds to importin alpha/beta, involved in hexon nuclear import' .
?pfsb75 faldo:position ?thisPositionOn77 ;
rdf:type faldo:ExactPosition .
?pfse76 faldo:position ?thisPositionOn78 ;
rdf:type faldo:ExactPosition .
?pfs79 up:annotation ?annotation80 .
?annotation80 faldo:begin ?pfsb81 ;
faldo:end ?pfse82 ;
rdf:type up:Motif_Annotation ;
rdfs:comment 'Nuclear export signal' .
?pfsb81 faldo:position ?thisPositionOn83 ;
rdf:type faldo:ExactPosition .
?pfse82 faldo:position ?thisPositionOn84 ;
rdf:type faldo:ExactPosition .
?pfs85 up:annotation ?annotation86 .
?annotation86 faldo:begin ?pfsb87 ;
faldo:end ?pfse88 ;
rdf:type up:Motif_Annotation ;
rdfs:comment 'Nuclear export signal' .
?pfsb87 faldo:position ?thisPositionOn89 ;
rdf:type faldo:ExactPosition .
?pfse88 faldo:position ?thisPositionOn90 ;
rdf:type faldo:ExactPosition .
?pfs91 up:annotation ?annotation92 .
?annotation92 faldo:begin ?pfsb93 ;
faldo:end ?pfse94 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Cleavage; by viral protease' .
?pfsb93 faldo:position ?thisPositionOn95 ;
rdf:type faldo:ExactPosition .
?pfse94 faldo:position ?thisPositionOn96 ;
rdf:type faldo:ExactPosition .
?pfs97 up:annotation ?annotation98 .
?annotation98 faldo:begin ?pfsb99 ;
faldo:end ?pfse100 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Cleavage; by viral protease' .
?pfsb99 faldo:position ?thisPositionOn101 ;
rdf:type faldo:ExactPosition .
?pfse100 faldo:position ?thisPositionOn102 ;
rdf:type faldo:ExactPosition .
?pfs103 up:annotation ?annotation104 .
?annotation104 faldo:begin ?pfsb105 ;
faldo:end ?pfse106 ;
rdf:type up:Motif_Annotation ;
rdfs:comment 'Nuclear localization signal' .
?pfsb105 faldo:position ?thisPositionOn107 ;
rdf:type faldo:ExactPosition .
?pfse106 faldo:position ?thisPositionOn108 ;
rdf:type faldo:ExactPosition .
?pfs109 up:annotation ?annotation110 .
?annotation110 faldo:begin ?pfsb111 ;
faldo:end ?pfse112 ;
rdf:type up:Motif_Annotation ;
rdfs:comment 'PPXY motif' .
?pfsb111 faldo:position ?thisPositionOn113 ;
rdf:type faldo:ExactPosition .
?pfse112 faldo:position ?thisPositionOn114 ;
rdf:type faldo:ExactPosition .
?pfs115 up:annotation ?annotation116 .
?annotation116 faldo:begin ?pfsb117 ;
faldo:end ?pfse118 ;
rdf:type up:Motif_Annotation ;
rdfs:comment 'Nuclear localization signal' .
?pfsb117 faldo:position ?thisPositionOn119 ;
rdf:type faldo:ExactPosition .
?pfse118 faldo:position ?thisPositionOn120 ;
rdf:type faldo:ExactPosition .
?pfs121 up:annotation ?annotation122 .
?annotation122 faldo:begin ?pfsb123 ;
faldo:end ?pfse124 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Phosphoserine; by host' .
?pfsb123 faldo:position ?thisPositionOn125 ;
rdf:type faldo:ExactPosition .
?pfse124 faldo:position ?thisPositionOn126 ;
rdf:type faldo:ExactPosition .
?pfs127 up:annotation ?annotation128 .
?annotation128 faldo:begin ?pfsb129 ;
faldo:end ?pfse130 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Phosphothreonine; by host' .
?pfsb129 faldo:position ?thisPositionOn131 ;
rdf:type faldo:ExactPosition .
?pfse130 faldo:position ?thisPositionOn132 ;
rdf:type faldo:ExactPosition .
?pfs133 up:annotation ?annotation134 .
?annotation134 faldo:begin ?pfsb135 ;
faldo:end ?pfse136 ;
rdf:type up:Disulfide_Bond_Annotation ;
rdfs:comment 'Interchain (with Adenovirus protease)' .
?pfsb135 faldo:position ?thisPositionOn137 ;
rdf:type faldo:ExactPosition .
?pfse136 faldo:position ?thisPositionOn138 ;
rdf:type faldo:ExactPosition .
_:912837 a rdf:Statement ;
up:attribution _:912769 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:912838 a rdf:Statement ;
up:attribution _:912771 ;
rdf:subject ?this ;
rdf:predicate up:component ;
rdf:object ?namedpart1 .
_:912839 a rdf:Statement ;
up:attribution _:912774 ;
rdf:subject ?this ;
rdf:predicate up:component ;
rdf:object ?namedpart2 .
_:912840 a rdf:Statement ;
up:attribution _:912777 ;
rdf:subject ?this ;
rdf:predicate up:component ;
rdf:object ?namedpart3 .
_:912841 a rdf:Statement ;
up:attribution _:912778 ;
rdf:subject ?gene4 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene4 .
_:912842 a rdf:Statement ;
up:attribution _:912779 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:912843 a rdf:Statement ;
up:attribution _:912780 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:912844 a rdf:Statement ;
up:attribution _:912781 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:912845 a rdf:Statement ;
up:attribution _:912782 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:912846 a rdf:Statement ;
up:attribution _:912783 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:912847 a rdf:Statement ;
up:attribution _:912784 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:912848 a rdf:Statement ;
up:attribution _:912785 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:912849 a rdf:Statement ;
up:attribution _:912786 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:912850 a rdf:Statement ;
up:attribution _:912787 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:912851 a rdf:Statement ;
up:attribution _:912788 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:912852 a rdf:Statement ;
up:attribution _:912789 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:912853 a rdf:Statement ;
up:attribution _:912790 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:912854 a rdf:Statement ;
up:attribution _:912791 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:912855 a rdf:Statement ;
up:attribution _:912792 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:912856 a rdf:Statement ;
up:attribution _:912793 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:912857 a rdf:Statement ;
up:attribution _:912794 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:912858 a rdf:Statement ;
up:attribution _:912795 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:167 .
_:912859 a rdf:Statement ;
up:attribution _:912796 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1176 .
_:912860 a rdf:Statement ;
up:attribution _:912797 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1015 .
_:912861 a rdf:Statement ;
up:attribution _:912798 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1035 .
_:912862 a rdf:Statement ;
up:attribution _:912799 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1048 .
_:912863 a rdf:Statement ;
up:attribution _:912800 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:945 .
_:912864 a rdf:Statement ;
up:attribution _:912801 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:426 .
_:912865 a rdf:Statement ;
up:attribution _:912802 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1177 .
_:912866 a rdf:Statement ;
up:attribution _:912803 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:597 .
_:912867 a rdf:Statement ;
up:attribution _:912804 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:832 .
_:912868 a rdf:Statement ;
up:attribution _:912805 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:118 .
_:912869 a rdf:Statement ;
up:attribution _:912806 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1162 .
_:912870 a rdf:Statement ;
up:attribution _:912807 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1174 .
_:912871 a rdf:Statement ;
up:attribution _:912808 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:946 .
_:912872 a rdf:Statement ;
up:attribution _:912809 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1160 .
_:912873 a rdf:Statement ;
up:attribution _:912810 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1188 .
_:912874 a rdf:Statement ;
up:attribution _:912811 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0030430 .
_:912875 a rdf:Statement ;
up:attribution _:912812 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0042025 .
_:912876 a rdf:Statement ;
up:attribution _:912813 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019028 .
_:912877 a rdf:Statement ;
up:attribution _:912814 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0046729 .
_:912878 a rdf:Statement ;
up:attribution _:912815 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0039664 .
_:912879 a rdf:Statement ;
up:attribution _:912816 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0075521 .
_:912880 a rdf:Statement ;
up:attribution _:912817 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019076 .
_:912881 a rdf:Statement ;
up:source unirule:MF_04048 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:912882 a rdf:Statement ;
up:attribution _:912818 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:912883 a rdf:Statement ;
up:source unirule:MF_04048 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:912884 a rdf:Statement ;
up:attribution _:912819 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:912885 a rdf:Statement ;
up:source unirule:MF_04048 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:912886 a rdf:Statement ;
up:attribution _:912820 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:912887 a rdf:Statement ;
up:source unirule:MF_04048 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
_:912888 a rdf:Statement ;
up:attribution _:912821 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
_:912889 a rdf:Statement ;
up:source unirule:MF_04048 ;
rdf:subject ?pfs49 ;
rdf:predicate up:annotation ;
rdf:object ?annotation50 .
_:912890 a rdf:Statement ;
up:attribution _:912822 ;
rdf:subject ?pfs49 ;
rdf:predicate up:annotation ;
rdf:object ?annotation50 .
_:912891 a rdf:Statement ;
up:source unirule:MF_04048 ;
rdf:subject ?pfs55 ;
rdf:predicate up:annotation ;
rdf:object ?annotation56 .
_:912892 a rdf:Statement ;
up:attribution _:912823 ;
rdf:subject ?pfs55 ;
rdf:predicate up:annotation ;
rdf:object ?annotation56 .
_:912893 a rdf:Statement ;
up:source unirule:MF_04048 ;
rdf:subject ?pfs61 ;
rdf:predicate up:annotation ;
rdf:object ?annotation62 .
_:912894 a rdf:Statement ;
up:attribution _:912824 ;
rdf:subject ?pfs61 ;
rdf:predicate up:annotation ;
rdf:object ?annotation62 .
_:912895 a rdf:Statement ;
up:source unirule:MF_04048 ;
rdf:subject ?pfs67 ;
rdf:predicate up:annotation ;
rdf:object ?annotation68 .
_:912896 a rdf:Statement ;
up:attribution _:912825 ;
rdf:subject ?pfs67 ;
rdf:predicate up:annotation ;
rdf:object ?annotation68 .
_:912897 a rdf:Statement ;
up:source unirule:MF_04048 ;
rdf:subject ?pfs73 ;
rdf:predicate up:annotation ;
rdf:object ?annotation74 .
_:912898 a rdf:Statement ;
up:attribution _:912826 ;
rdf:subject ?pfs73 ;
rdf:predicate up:annotation ;
rdf:object ?annotation74 .
_:912899 a rdf:Statement ;
up:source unirule:MF_04048 ;
rdf:subject ?pfs79 ;
rdf:predicate up:annotation ;
rdf:object ?annotation80 .
_:912900 a rdf:Statement ;
up:attribution _:912827 ;
rdf:subject ?pfs79 ;
rdf:predicate up:annotation ;
rdf:object ?annotation80 .
_:912901 a rdf:Statement ;
up:source unirule:MF_04048 ;
rdf:subject ?pfs85 ;
rdf:predicate up:annotation ;
rdf:object ?annotation86 .
_:912902 a rdf:Statement ;
up:attribution _:912828 ;
rdf:subject ?pfs85 ;
rdf:predicate up:annotation ;
rdf:object ?annotation86 .
_:912903 a rdf:Statement ;
up:source unirule:MF_04048 ;
rdf:subject ?pfs91 ;
rdf:predicate up:annotation ;
rdf:object ?annotation92 .
_:912904 a rdf:Statement ;
up:attribution _:912829 ;
rdf:subject ?pfs91 ;
rdf:predicate up:annotation ;
rdf:object ?annotation92 .
_:912905 a rdf:Statement ;
up:source unirule:MF_04048 ;
rdf:subject ?pfs97 ;
rdf:predicate up:annotation ;
rdf:object ?annotation98 .
_:912906 a rdf:Statement ;
up:attribution _:912830 ;
rdf:subject ?pfs97 ;
rdf:predicate up:annotation ;
rdf:object ?annotation98 .
_:912907 a rdf:Statement ;
up:source unirule:MF_04048 ;
rdf:subject ?pfs103 ;
rdf:predicate up:annotation ;
rdf:object ?annotation104 .
_:912908 a rdf:Statement ;
up:attribution _:912831 ;
rdf:subject ?pfs103 ;
rdf:predicate up:annotation ;
rdf:object ?annotation104 .
_:912909 a rdf:Statement ;
up:source unirule:MF_04048 ;
rdf:subject ?pfs109 ;
rdf:predicate up:annotation ;
rdf:object ?annotation110 .
_:912910 a rdf:Statement ;
up:attribution _:912832 ;
rdf:subject ?pfs109 ;
rdf:predicate up:annotation ;
rdf:object ?annotation110 .
_:912911 a rdf:Statement ;
up:source unirule:MF_04048 ;
rdf:subject ?pfs115 ;
rdf:predicate up:annotation ;
rdf:object ?annotation116 .
_:912912 a rdf:Statement ;
up:attribution _:912833 ;
rdf:subject ?pfs115 ;
rdf:predicate up:annotation ;
rdf:object ?annotation116 .
_:912913 a rdf:Statement ;
up:source unirule:MF_04048 ;
rdf:subject ?pfs121 ;
rdf:predicate up:annotation ;
rdf:object ?annotation122 .
_:912914 a rdf:Statement ;
up:attribution _:912834 ;
rdf:subject ?pfs121 ;
rdf:predicate up:annotation ;
rdf:object ?annotation122 .
_:912915 a rdf:Statement ;
up:source unirule:MF_04048 ;
rdf:subject ?pfs127 ;
rdf:predicate up:annotation ;
rdf:object ?annotation128 .
_:912916 a rdf:Statement ;
up:attribution _:912835 ;
rdf:subject ?pfs127 ;
rdf:predicate up:annotation ;
rdf:object ?annotation128 .
_:912917 a rdf:Statement ;
up:source unirule:MF_04048 ;
rdf:subject ?pfs133 ;
rdf:predicate up:annotation ;
rdf:object ?annotation134 .
_:912918 a rdf:Statement ;
up:attribution _:912836 ;
rdf:subject ?pfs133 ;
rdf:predicate up:annotation ;
rdf:object ?annotation134 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_04048
#Rule MF_04048 Created by:? on:2017-02-23 Modified by:Chantal Hulo on:2025-07-17
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_04048 .
?thisOrganism rdfs:subClassOf+ taxon:10508 .
BIND(URI(CONCAT(STR(?this), '#MF_04048a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_04048a1')) AS ?namedpart1) .
BIND(URI(CONCAT(STR(?this), '#MF_04048a2')) AS ?namedpart2) .
BIND(URI(CONCAT(STR(?this), '#MF_04048a3')) AS ?namedpart3) .
BIND(URI(CONCAT(STR(?this), '#MF_04048a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_04048a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_04048a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_04048a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_04048a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_04048a10')) AS ?annotation10) .
BIND(URI(CONCAT(STR(?this), '#MF_04048a11')) AS ?annotation11) .
BIND(URI(CONCAT(STR(?this), '#MF_04048a14')) AS ?annotation14) .
BIND(URI(CONCAT(STR(?this), '#MF_04048a16')) AS ?annotation16) .
BIND(URI(CONCAT(STR(?this), '#MF_04048a18')) AS ?annotation18) .
BIND(URI(CONCAT(STR(?this), '#MF_04048a19')) AS ?annotation19) .
BIND(URI(CONCAT(STR(?this), '#MF_04048a20')) AS ?annotation20) .
BIND(URI(CONCAT(STR(?this), '#MF_04048a21')) AS ?annotation21) .
BIND(URI(CONCAT(STR(?this), '#MF_04048a22')) AS ?annotation22) .
BIND(URI(CONCAT(STR(?this), '#MF_04048a23')) AS ?annotation23) .
BIND(URI(CONCAT(STR(?this), '#MF_04048a24')) AS ?annotation24) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch143 faldo:location ?templateMotifSequenceMatchRegionP24937144 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP24937146 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP24937MF_04048139 .
?templateMotifSequenceMatchRegionP24937144 faldo:begin ?templateMotifSequenceMatchBeginP24937145 .
?templateMotifSequenceMatchBeginP24937145 faldo:position ?templateMotifSequenceMatchBeginPositionP24937140 ;
faldo:reference isoform:P24937-1 .
?templateMotifSequenceProfileAlignmentOperationP24937146 edam:has_input signature:MF_04048 ;
rdf:type edam:operation_0300 .
?targetMotifMatch147 faldo:location ?targetMotifMatchRegionMatch148 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04048150 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP24937MF_04048141 .
?targetMotifMatchRegionMatch148 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04048149 .
?targetMotifMatchRegionMatchBeginMF_04048149 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04048142 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04048150 edam:has_input signature:MF_04048 ;
rdf:type edam:operation_0300 .
BIND(1 AS ?thisPositionOn29) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn30) .
BIND(?this AS ?pfs1t151) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb27) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse28) .
FILTER ((BOUND(?thisPositionOn29) && BOUND(?thisPositionOn30))) .
BIND(URI(CONCAT(STR(?this), '#MF_04048a26')) AS ?annotation26) .
BIND(?this AS ?pfs25) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch156 faldo:location ?templateMotifSequenceMatchRegionP24937157 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP24937159 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP24937MF_04048152 .
?templateMotifSequenceMatchRegionP24937157 faldo:begin ?templateMotifSequenceMatchBeginP24937158 .
?templateMotifSequenceMatchBeginP24937158 faldo:position ?templateMotifSequenceMatchBeginPositionP24937153 ;
faldo:reference isoform:P24937-1 .
?templateMotifSequenceProfileAlignmentOperationP24937159 edam:has_input signature:MF_04048 ;
rdf:type edam:operation_0300 .
?targetMotifMatch160 faldo:location ?targetMotifMatchRegionMatch161 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04048163 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP24937MF_04048154 .
?targetMotifMatchRegionMatch161 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04048162 .
?targetMotifMatchRegionMatchBeginMF_04048162 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04048155 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04048163 edam:has_input signature:MF_04048 ;
rdf:type edam:operation_0300 .
BIND(1 AS ?thisPositionOn35) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24937MF_04048152, 1, (STRLEN(?templateMotifCigarP24937MF_04048152) - STRLEN(REPLACE(?templateMotifCigarP24937MF_04048152, CONCAT('^(?:-*[^-]){', STR(((33 - ?templateMotifSequenceMatchBeginPositionP24937153) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1164) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24937MF_04048154, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048154) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048154, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1164), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24937MF_04048154, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048154) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048154, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1164), '}'), '')))), '[^-]', ''))) AS ?step2165) .
BIND(((?step2165 + ?targetMotifMatchRegionMatchBeginPositionMF_04048155) - 1) AS ?thisPositionOn36) .
BIND(?this AS ?pfs1t166) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfsb33) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfse34) .
FILTER ((BOUND(?thisPositionOn35) && BOUND(?thisPositionOn36))) .
BIND(URI(CONCAT(STR(?this), '#MF_04048a32')) AS ?annotation32) .
BIND(?this AS ?pfs31) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch171 faldo:location ?templateMotifSequenceMatchRegionP24937172 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP24937174 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP24937MF_04048167 .
?templateMotifSequenceMatchRegionP24937172 faldo:begin ?templateMotifSequenceMatchBeginP24937173 .
?templateMotifSequenceMatchBeginP24937173 faldo:position ?templateMotifSequenceMatchBeginPositionP24937168 ;
faldo:reference isoform:P24937-1 .
?templateMotifSequenceProfileAlignmentOperationP24937174 edam:has_input signature:MF_04048 ;
rdf:type edam:operation_0300 .
?targetMotifMatch175 faldo:location ?targetMotifMatchRegionMatch176 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04048178 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP24937MF_04048169 .
?targetMotifMatchRegionMatch176 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04048177 .
?targetMotifMatchRegionMatchBeginMF_04048177 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04048170 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04048178 edam:has_input signature:MF_04048 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24937MF_04048167, 1, (STRLEN(?templateMotifCigarP24937MF_04048167) - STRLEN(REPLACE(?templateMotifCigarP24937MF_04048167, CONCAT('^(?:-*[^-]){', STR(((34 - ?templateMotifSequenceMatchBeginPositionP24937168) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1179) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24937MF_04048169, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048169) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048169, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1179), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24937MF_04048169, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048169) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048169, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1179), '}'), '')))), '[^-]', ''))) AS ?step2180) .
BIND(((?step2180 + ?targetMotifMatchRegionMatchBeginPositionMF_04048170) - 1) AS ?thisPositionOn41) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24937MF_04048167, 1, (STRLEN(?templateMotifCigarP24937MF_04048167) - STRLEN(REPLACE(?templateMotifCigarP24937MF_04048167, CONCAT('^(?:-*[^-]){', STR(((239 - ?templateMotifSequenceMatchBeginPositionP24937168) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1181) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24937MF_04048169, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048169) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048169, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1181), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24937MF_04048169, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048169) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048169, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1181), '}'), '')))), '[^-]', ''))) AS ?step2182) .
BIND(((?step2182 + ?targetMotifMatchRegionMatchBeginPositionMF_04048170) - 1) AS ?thisPositionOn42) .
BIND(?this AS ?pfs1t183) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfsb39) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfse40) .
FILTER ((BOUND(?thisPositionOn41) && BOUND(?thisPositionOn42))) .
BIND(URI(CONCAT(STR(?this), '#MF_04048a38')) AS ?annotation38) .
BIND(?this AS ?pfs37) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch188 faldo:location ?templateMotifSequenceMatchRegionP24937189 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP24937191 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP24937MF_04048184 .
?templateMotifSequenceMatchRegionP24937189 faldo:begin ?templateMotifSequenceMatchBeginP24937190 .
?templateMotifSequenceMatchBeginP24937190 faldo:position ?templateMotifSequenceMatchBeginPositionP24937185 ;
faldo:reference isoform:P24937-1 .
?templateMotifSequenceProfileAlignmentOperationP24937191 edam:has_input signature:MF_04048 ;
rdf:type edam:operation_0300 .
?targetMotifMatch192 faldo:location ?targetMotifMatchRegionMatch193 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04048195 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP24937MF_04048186 .
?targetMotifMatchRegionMatch193 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04048194 .
?targetMotifMatchRegionMatchBeginMF_04048194 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04048187 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04048195 edam:has_input signature:MF_04048 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24937MF_04048184, 1, (STRLEN(?templateMotifCigarP24937MF_04048184) - STRLEN(REPLACE(?templateMotifCigarP24937MF_04048184, CONCAT('^(?:-*[^-]){', STR(((240 - ?templateMotifSequenceMatchBeginPositionP24937185) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1196) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24937MF_04048186, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048186) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048186, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1196), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24937MF_04048186, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048186) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048186, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1196), '}'), '')))), '[^-]', ''))) AS ?step2197) .
BIND(((?step2197 + ?targetMotifMatchRegionMatchBeginPositionMF_04048187) - 1) AS ?thisPositionOn47) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24937MF_04048184, 1, (STRLEN(?templateMotifCigarP24937MF_04048184) - STRLEN(REPLACE(?templateMotifCigarP24937MF_04048184, CONCAT('^(?:-*[^-]){', STR(((250 - ?templateMotifSequenceMatchBeginPositionP24937185) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1198) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24937MF_04048186, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048186) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048186, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1198), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24937MF_04048186, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048186) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048186, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1198), '}'), '')))), '[^-]', ''))) AS ?step2199) .
BIND(((?step2199 + ?targetMotifMatchRegionMatchBeginPositionMF_04048187) - 1) AS ?thisPositionOn48) .
BIND(?this AS ?pfs1t200) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfsb45) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfse46) .
FILTER ((BOUND(?thisPositionOn47) && BOUND(?thisPositionOn48))) .
BIND(URI(CONCAT(STR(?this), '#MF_04048a44')) AS ?annotation44) .
BIND(?this AS ?pfs43) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch205 faldo:location ?templateMotifSequenceMatchRegionP24937206 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP24937208 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP24937MF_04048201 .
?templateMotifSequenceMatchRegionP24937206 faldo:begin ?templateMotifSequenceMatchBeginP24937207 .
?templateMotifSequenceMatchBeginP24937207 faldo:position ?templateMotifSequenceMatchBeginPositionP24937202 ;
faldo:reference isoform:P24937-1 .
?templateMotifSequenceProfileAlignmentOperationP24937208 edam:has_input signature:MF_04048 ;
rdf:type edam:operation_0300 .
?targetMotifMatch209 faldo:location ?targetMotifMatchRegionMatch210 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04048212 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP24937MF_04048203 .
?targetMotifMatchRegionMatch210 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04048211 .
?targetMotifMatchRegionMatchBeginMF_04048211 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04048204 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04048212 edam:has_input signature:MF_04048 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24937MF_04048201, 1, (STRLEN(?templateMotifCigarP24937MF_04048201) - STRLEN(REPLACE(?templateMotifCigarP24937MF_04048201, CONCAT('^(?:-*[^-]){', STR(((34 - ?templateMotifSequenceMatchBeginPositionP24937202) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1213) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24937MF_04048203, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048203) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048203, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1213), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24937MF_04048203, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048203) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048203, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1213), '}'), '')))), '[^-]', ''))) AS ?step2214) .
BIND(((?step2214 + ?targetMotifMatchRegionMatchBeginPositionMF_04048204) - 1) AS ?thisPositionOn53) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24937MF_04048201, 1, (STRLEN(?templateMotifCigarP24937MF_04048201) - STRLEN(REPLACE(?templateMotifCigarP24937MF_04048201, CONCAT('^(?:-*[^-]){', STR(((54 - ?templateMotifSequenceMatchBeginPositionP24937202) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1215) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24937MF_04048203, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048203) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048203, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1215), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24937MF_04048203, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048203) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048203, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1215), '}'), '')))), '[^-]', ''))) AS ?step2216) .
BIND(((?step2216 + ?targetMotifMatchRegionMatchBeginPositionMF_04048204) - 1) AS ?thisPositionOn54) .
BIND(?this AS ?pfs1t217) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfsb51) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfse52) .
FILTER ((BOUND(?thisPositionOn53) && BOUND(?thisPositionOn54))) .
BIND(URI(CONCAT(STR(?this), '#MF_04048a50')) AS ?annotation50) .
BIND(?this AS ?pfs49) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch222 faldo:location ?templateMotifSequenceMatchRegionP24937223 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP24937225 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP24937MF_04048218 .
?templateMotifSequenceMatchRegionP24937223 faldo:begin ?templateMotifSequenceMatchBeginP24937224 .
?templateMotifSequenceMatchBeginP24937224 faldo:position ?templateMotifSequenceMatchBeginPositionP24937219 ;
faldo:reference isoform:P24937-1 .
?templateMotifSequenceProfileAlignmentOperationP24937225 edam:has_input signature:MF_04048 ;
rdf:type edam:operation_0300 .
?targetMotifMatch226 faldo:location ?targetMotifMatchRegionMatch227 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04048229 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP24937MF_04048220 .
?targetMotifMatchRegionMatch227 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04048228 .
?targetMotifMatchRegionMatchBeginMF_04048228 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04048221 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04048229 edam:has_input signature:MF_04048 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24937MF_04048218, 1, (STRLEN(?templateMotifCigarP24937MF_04048218) - STRLEN(REPLACE(?templateMotifCigarP24937MF_04048218, CONCAT('^(?:-*[^-]){', STR(((36 - ?templateMotifSequenceMatchBeginPositionP24937219) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1230) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24937MF_04048220, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048220) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048220, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1230), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24937MF_04048220, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048220) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048220, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1230), '}'), '')))), '[^-]', ''))) AS ?step2231) .
BIND(((?step2231 + ?targetMotifMatchRegionMatchBeginPositionMF_04048221) - 1) AS ?thisPositionOn59) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24937MF_04048218, 1, (STRLEN(?templateMotifCigarP24937MF_04048218) - STRLEN(REPLACE(?templateMotifCigarP24937MF_04048218, CONCAT('^(?:-*[^-]){', STR(((53 - ?templateMotifSequenceMatchBeginPositionP24937219) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1232) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24937MF_04048220, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048220) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048220, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1232), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24937MF_04048220, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048220) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048220, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1232), '}'), '')))), '[^-]', ''))) AS ?step2233) .
BIND(((?step2233 + ?targetMotifMatchRegionMatchBeginPositionMF_04048221) - 1) AS ?thisPositionOn60) .
BIND(?this AS ?pfs1t234) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfsb57) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfse58) .
FILTER ((BOUND(?thisPositionOn59) && BOUND(?thisPositionOn60))) .
BIND(URI(CONCAT(STR(?this), '#MF_04048a56')) AS ?annotation56) .
BIND(?this AS ?pfs55) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch239 faldo:location ?templateMotifSequenceMatchRegionP24937240 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP24937242 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP24937MF_04048235 .
?templateMotifSequenceMatchRegionP24937240 faldo:begin ?templateMotifSequenceMatchBeginP24937241 .
?templateMotifSequenceMatchBeginP24937241 faldo:position ?templateMotifSequenceMatchBeginPositionP24937236 ;
faldo:reference isoform:P24937-1 .
?templateMotifSequenceProfileAlignmentOperationP24937242 edam:has_input signature:MF_04048 ;
rdf:type edam:operation_0300 .
?targetMotifMatch243 faldo:location ?targetMotifMatchRegionMatch244 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04048246 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP24937MF_04048237 .
?targetMotifMatchRegionMatch244 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04048245 .
?targetMotifMatchRegionMatchBeginMF_04048245 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04048238 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04048246 edam:has_input signature:MF_04048 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24937MF_04048235, 1, (STRLEN(?templateMotifCigarP24937MF_04048235) - STRLEN(REPLACE(?templateMotifCigarP24937MF_04048235, CONCAT('^(?:-*[^-]){', STR(((48 - ?templateMotifSequenceMatchBeginPositionP24937236) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1247) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24937MF_04048237, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048237) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048237, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1247), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24937MF_04048237, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048237) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048237, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1247), '}'), '')))), '[^-]', ''))) AS ?step2248) .
BIND(((?step2248 + ?targetMotifMatchRegionMatchBeginPositionMF_04048238) - 1) AS ?thisPositionOn65) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24937MF_04048235, 1, (STRLEN(?templateMotifCigarP24937MF_04048235) - STRLEN(REPLACE(?templateMotifCigarP24937MF_04048235, CONCAT('^(?:-*[^-]){', STR(((74 - ?templateMotifSequenceMatchBeginPositionP24937236) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1249) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24937MF_04048237, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048237) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048237, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1249), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24937MF_04048237, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048237) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048237, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1249), '}'), '')))), '[^-]', ''))) AS ?step2250) .
BIND(((?step2250 + ?targetMotifMatchRegionMatchBeginPositionMF_04048238) - 1) AS ?thisPositionOn66) .
BIND(?this AS ?pfs1t251) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn65))) AS ?pfsb63) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfse64) .
FILTER ((BOUND(?thisPositionOn65) && BOUND(?thisPositionOn66))) .
BIND(URI(CONCAT(STR(?this), '#MF_04048a62')) AS ?annotation62) .
BIND(?this AS ?pfs61) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch256 faldo:location ?templateMotifSequenceMatchRegionP24937257 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP24937259 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP24937MF_04048252 .
?templateMotifSequenceMatchRegionP24937257 faldo:begin ?templateMotifSequenceMatchBeginP24937258 .
?templateMotifSequenceMatchBeginP24937258 faldo:position ?templateMotifSequenceMatchBeginPositionP24937253 ;
faldo:reference isoform:P24937-1 .
?templateMotifSequenceProfileAlignmentOperationP24937259 edam:has_input signature:MF_04048 ;
rdf:type edam:operation_0300 .
?targetMotifMatch260 faldo:location ?targetMotifMatchRegionMatch261 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04048263 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP24937MF_04048254 .
?targetMotifMatchRegionMatch261 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04048262 .
?targetMotifMatchRegionMatchBeginMF_04048262 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04048255 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04048263 edam:has_input signature:MF_04048 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24937MF_04048252, 1, (STRLEN(?templateMotifCigarP24937MF_04048252) - STRLEN(REPLACE(?templateMotifCigarP24937MF_04048252, CONCAT('^(?:-*[^-]){', STR(((233 - ?templateMotifSequenceMatchBeginPositionP24937253) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1264) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24937MF_04048254, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048254) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048254, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1264), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24937MF_04048254, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048254) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048254, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1264), '}'), '')))), '[^-]', ''))) AS ?step2265) .
BIND(((?step2265 + ?targetMotifMatchRegionMatchBeginPositionMF_04048255) - 1) AS ?thisPositionOn71) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24937MF_04048252, 1, (STRLEN(?templateMotifCigarP24937MF_04048252) - STRLEN(REPLACE(?templateMotifCigarP24937MF_04048252, CONCAT('^(?:-*[^-]){', STR(((239 - ?templateMotifSequenceMatchBeginPositionP24937253) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1266) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24937MF_04048254, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048254) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048254, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1266), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24937MF_04048254, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048254) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048254, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1266), '}'), '')))), '[^-]', ''))) AS ?step2267) .
BIND(((?step2267 + ?targetMotifMatchRegionMatchBeginPositionMF_04048255) - 1) AS ?thisPositionOn72) .
BIND(?this AS ?pfs1t268) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn71))) AS ?pfsb69) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn72))) AS ?pfse70) .
FILTER ((BOUND(?thisPositionOn71) && BOUND(?thisPositionOn72))) .
BIND(URI(CONCAT(STR(?this), '#MF_04048a68')) AS ?annotation68) .
BIND(?this AS ?pfs67) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch273 faldo:location ?templateMotifSequenceMatchRegionP24937274 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP24937276 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP24937MF_04048269 .
?templateMotifSequenceMatchRegionP24937274 faldo:begin ?templateMotifSequenceMatchBeginP24937275 .
?templateMotifSequenceMatchBeginP24937275 faldo:position ?templateMotifSequenceMatchBeginPositionP24937270 ;
faldo:reference isoform:P24937-1 .
?templateMotifSequenceProfileAlignmentOperationP24937276 edam:has_input signature:MF_04048 ;
rdf:type edam:operation_0300 .
?targetMotifMatch277 faldo:location ?targetMotifMatchRegionMatch278 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04048280 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP24937MF_04048271 .
?targetMotifMatchRegionMatch278 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04048279 .
?targetMotifMatchRegionMatchBeginMF_04048279 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04048272 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04048280 edam:has_input signature:MF_04048 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24937MF_04048269, 1, (STRLEN(?templateMotifCigarP24937MF_04048269) - STRLEN(REPLACE(?templateMotifCigarP24937MF_04048269, CONCAT('^(?:-*[^-]){', STR(((240 - ?templateMotifSequenceMatchBeginPositionP24937270) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1281) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24937MF_04048271, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048271) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048271, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1281), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24937MF_04048271, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048271) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048271, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1281), '}'), '')))), '[^-]', ''))) AS ?step2282) .
BIND(((?step2282 + ?targetMotifMatchRegionMatchBeginPositionMF_04048272) - 1) AS ?thisPositionOn77) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24937MF_04048269, 1, (STRLEN(?templateMotifCigarP24937MF_04048269) - STRLEN(REPLACE(?templateMotifCigarP24937MF_04048269, CONCAT('^(?:-*[^-]){', STR(((250 - ?templateMotifSequenceMatchBeginPositionP24937270) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1283) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24937MF_04048271, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048271) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048271, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1283), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24937MF_04048271, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048271) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048271, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1283), '}'), '')))), '[^-]', ''))) AS ?step2284) .
BIND(((?step2284 + ?targetMotifMatchRegionMatchBeginPositionMF_04048272) - 1) AS ?thisPositionOn78) .
BIND(?this AS ?pfs1t285) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn77))) AS ?pfsb75) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn78))) AS ?pfse76) .
FILTER ((BOUND(?thisPositionOn77) && BOUND(?thisPositionOn78))) .
BIND(URI(CONCAT(STR(?this), '#MF_04048a74')) AS ?annotation74) .
BIND(?this AS ?pfs73) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch290 faldo:location ?templateMotifSequenceMatchRegionP24937291 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP24937293 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP24937MF_04048286 .
?templateMotifSequenceMatchRegionP24937291 faldo:begin ?templateMotifSequenceMatchBeginP24937292 .
?templateMotifSequenceMatchBeginP24937292 faldo:position ?templateMotifSequenceMatchBeginPositionP24937287 ;
faldo:reference isoform:P24937-1 .
?templateMotifSequenceProfileAlignmentOperationP24937293 edam:has_input signature:MF_04048 ;
rdf:type edam:operation_0300 .
?targetMotifMatch294 faldo:location ?targetMotifMatchRegionMatch295 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04048297 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP24937MF_04048288 .
?targetMotifMatchRegionMatch295 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04048296 .
?targetMotifMatchRegionMatchBeginMF_04048296 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04048289 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04048297 edam:has_input signature:MF_04048 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24937MF_04048286, 1, (STRLEN(?templateMotifCigarP24937MF_04048286) - STRLEN(REPLACE(?templateMotifCigarP24937MF_04048286, CONCAT('^(?:-*[^-]){', STR(((67 - ?templateMotifSequenceMatchBeginPositionP24937287) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1298) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24937MF_04048288, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048288) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048288, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1298), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24937MF_04048288, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048288) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048288, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1298), '}'), '')))), '[^-]', ''))) AS ?step2299) .
BIND(((?step2299 + ?targetMotifMatchRegionMatchBeginPositionMF_04048289) - 1) AS ?thisPositionOn83) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24937MF_04048286, 1, (STRLEN(?templateMotifCigarP24937MF_04048286) - STRLEN(REPLACE(?templateMotifCigarP24937MF_04048286, CONCAT('^(?:-*[^-]){', STR(((76 - ?templateMotifSequenceMatchBeginPositionP24937287) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1300) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24937MF_04048288, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048288) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048288, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1300), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24937MF_04048288, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048288) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048288, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1300), '}'), '')))), '[^-]', ''))) AS ?step2301) .
BIND(((?step2301 + ?targetMotifMatchRegionMatchBeginPositionMF_04048289) - 1) AS ?thisPositionOn84) .
BIND(?this AS ?pfs1t302) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn83))) AS ?pfsb81) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn84))) AS ?pfse82) .
FILTER ((BOUND(?thisPositionOn83) && BOUND(?thisPositionOn84))) .
BIND(URI(CONCAT(STR(?this), '#MF_04048a80')) AS ?annotation80) .
BIND(?this AS ?pfs79) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch307 faldo:location ?templateMotifSequenceMatchRegionP24937308 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP24937310 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP24937MF_04048303 .
?templateMotifSequenceMatchRegionP24937308 faldo:begin ?templateMotifSequenceMatchBeginP24937309 .
?templateMotifSequenceMatchBeginP24937309 faldo:position ?templateMotifSequenceMatchBeginPositionP24937304 ;
faldo:reference isoform:P24937-1 .
?templateMotifSequenceProfileAlignmentOperationP24937310 edam:has_input signature:MF_04048 ;
rdf:type edam:operation_0300 .
?targetMotifMatch311 faldo:location ?targetMotifMatchRegionMatch312 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04048314 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP24937MF_04048305 .
?targetMotifMatchRegionMatch312 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04048313 .
?targetMotifMatchRegionMatchBeginMF_04048313 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04048306 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04048314 edam:has_input signature:MF_04048 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24937MF_04048303, 1, (STRLEN(?templateMotifCigarP24937MF_04048303) - STRLEN(REPLACE(?templateMotifCigarP24937MF_04048303, CONCAT('^(?:-*[^-]){', STR(((231 - ?templateMotifSequenceMatchBeginPositionP24937304) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1315) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24937MF_04048305, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048305) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048305, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1315), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24937MF_04048305, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048305) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048305, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1315), '}'), '')))), '[^-]', ''))) AS ?step2316) .
BIND(((?step2316 + ?targetMotifMatchRegionMatchBeginPositionMF_04048306) - 1) AS ?thisPositionOn89) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24937MF_04048303, 1, (STRLEN(?templateMotifCigarP24937MF_04048303) - STRLEN(REPLACE(?templateMotifCigarP24937MF_04048303, CONCAT('^(?:-*[^-]){', STR(((242 - ?templateMotifSequenceMatchBeginPositionP24937304) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1317) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24937MF_04048305, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048305) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048305, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1317), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24937MF_04048305, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048305) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048305, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1317), '}'), '')))), '[^-]', ''))) AS ?step2318) .
BIND(((?step2318 + ?targetMotifMatchRegionMatchBeginPositionMF_04048306) - 1) AS ?thisPositionOn90) .
BIND(?this AS ?pfs1t319) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn89))) AS ?pfsb87) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn90))) AS ?pfse88) .
FILTER ((BOUND(?thisPositionOn89) && BOUND(?thisPositionOn90))) .
BIND(URI(CONCAT(STR(?this), '#MF_04048a86')) AS ?annotation86) .
BIND(?this AS ?pfs85) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch324 faldo:location ?templateMotifSequenceMatchRegionP24937325 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP24937327 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP24937MF_04048320 .
?templateMotifSequenceMatchRegionP24937325 faldo:begin ?templateMotifSequenceMatchBeginP24937326 .
?templateMotifSequenceMatchBeginP24937326 faldo:position ?templateMotifSequenceMatchBeginPositionP24937321 ;
faldo:reference isoform:P24937-1 .
?templateMotifSequenceProfileAlignmentOperationP24937327 edam:has_input signature:MF_04048 ;
rdf:type edam:operation_0300 .
?targetMotifMatch328 faldo:location ?targetMotifMatchRegionMatch329 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04048331 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP24937MF_04048322 .
?targetMotifMatchRegionMatch329 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04048330 .
?targetMotifMatchRegionMatchBeginMF_04048330 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04048323 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04048331 edam:has_input signature:MF_04048 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24937MF_04048320, 1, (STRLEN(?templateMotifCigarP24937MF_04048320) - STRLEN(REPLACE(?templateMotifCigarP24937MF_04048320, CONCAT('^(?:-*[^-]){', STR(((33 - ?templateMotifSequenceMatchBeginPositionP24937321) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1332) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24937MF_04048322, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048322) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048322, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1332), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24937MF_04048322, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048322) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048322, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1332), '}'), '')))), '[^-]', ''))) AS ?step2333) .
BIND(((?step2333 + ?targetMotifMatchRegionMatchBeginPositionMF_04048323) - 1) AS ?thisPositionOn95) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24937MF_04048320, 1, (STRLEN(?templateMotifCigarP24937MF_04048320) - STRLEN(REPLACE(?templateMotifCigarP24937MF_04048320, CONCAT('^(?:-*[^-]){', STR(((34 - ?templateMotifSequenceMatchBeginPositionP24937321) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1334) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24937MF_04048322, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048322) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048322, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1334), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24937MF_04048322, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048322) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048322, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1334), '}'), '')))), '[^-]', ''))) AS ?step2335) .
BIND(((?step2335 + ?targetMotifMatchRegionMatchBeginPositionMF_04048323) - 1) AS ?thisPositionOn96) .
BIND(?this AS ?pfs1t336) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn95))) AS ?pfsb93) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn96))) AS ?pfse94) .
FILTER ((BOUND(?thisPositionOn95) && BOUND(?thisPositionOn96))) .
BIND(URI(CONCAT(STR(?this), '#MF_04048a92')) AS ?annotation92) .
BIND(?this AS ?pfs91) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch341 faldo:location ?templateMotifSequenceMatchRegionP24937342 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP24937344 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP24937MF_04048337 .
?templateMotifSequenceMatchRegionP24937342 faldo:begin ?templateMotifSequenceMatchBeginP24937343 .
?templateMotifSequenceMatchBeginP24937343 faldo:position ?templateMotifSequenceMatchBeginPositionP24937338 ;
faldo:reference isoform:P24937-1 .
?templateMotifSequenceProfileAlignmentOperationP24937344 edam:has_input signature:MF_04048 ;
rdf:type edam:operation_0300 .
?targetMotifMatch345 faldo:location ?targetMotifMatchRegionMatch346 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04048348 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP24937MF_04048339 .
?targetMotifMatchRegionMatch346 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04048347 .
?targetMotifMatchRegionMatchBeginMF_04048347 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04048340 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04048348 edam:has_input signature:MF_04048 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24937MF_04048337, 1, (STRLEN(?templateMotifCigarP24937MF_04048337) - STRLEN(REPLACE(?templateMotifCigarP24937MF_04048337, CONCAT('^(?:-*[^-]){', STR(((239 - ?templateMotifSequenceMatchBeginPositionP24937338) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1349) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24937MF_04048339, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048339) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048339, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1349), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24937MF_04048339, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048339) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048339, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1349), '}'), '')))), '[^-]', ''))) AS ?step2350) .
BIND(((?step2350 + ?targetMotifMatchRegionMatchBeginPositionMF_04048340) - 1) AS ?thisPositionOn101) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24937MF_04048337, 1, (STRLEN(?templateMotifCigarP24937MF_04048337) - STRLEN(REPLACE(?templateMotifCigarP24937MF_04048337, CONCAT('^(?:-*[^-]){', STR(((240 - ?templateMotifSequenceMatchBeginPositionP24937338) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1351) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24937MF_04048339, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048339) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048339, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1351), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24937MF_04048339, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048339) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048339, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1351), '}'), '')))), '[^-]', ''))) AS ?step2352) .
BIND(((?step2352 + ?targetMotifMatchRegionMatchBeginPositionMF_04048340) - 1) AS ?thisPositionOn102) .
BIND(?this AS ?pfs1t353) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn101))) AS ?pfsb99) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn102))) AS ?pfse100) .
FILTER ((BOUND(?thisPositionOn101) && BOUND(?thisPositionOn102))) .
BIND(URI(CONCAT(STR(?this), '#MF_04048a98')) AS ?annotation98) .
BIND(?this AS ?pfs97) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch358 faldo:location ?templateMotifSequenceMatchRegionP24937359 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP24937361 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP24937MF_04048354 .
?templateMotifSequenceMatchRegionP24937359 faldo:begin ?templateMotifSequenceMatchBeginP24937360 .
?templateMotifSequenceMatchBeginP24937360 faldo:position ?templateMotifSequenceMatchBeginPositionP24937355 ;
faldo:reference isoform:P24937-1 .
?templateMotifSequenceProfileAlignmentOperationP24937361 edam:has_input signature:MF_04048 ;
rdf:type edam:operation_0300 .
?targetMotifMatch362 faldo:location ?targetMotifMatchRegionMatch363 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04048365 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP24937MF_04048356 .
?targetMotifMatchRegionMatch363 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04048364 .
?targetMotifMatchRegionMatchBeginMF_04048364 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04048357 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04048365 edam:has_input signature:MF_04048 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24937MF_04048354, 1, (STRLEN(?templateMotifCigarP24937MF_04048354) - STRLEN(REPLACE(?templateMotifCigarP24937MF_04048354, CONCAT('^(?:-*[^-]){', STR(((131 - ?templateMotifSequenceMatchBeginPositionP24937355) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1366) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24937MF_04048356, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048356) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048356, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1366), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24937MF_04048356, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048356) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048356, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1366), '}'), '')))), '[^-]', ''))) AS ?step2367) .
BIND(((?step2367 + ?targetMotifMatchRegionMatchBeginPositionMF_04048357) - 1) AS ?thisPositionOn107) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24937MF_04048354, 1, (STRLEN(?templateMotifCigarP24937MF_04048354) - STRLEN(REPLACE(?templateMotifCigarP24937MF_04048354, CONCAT('^(?:-*[^-]){', STR(((135 - ?templateMotifSequenceMatchBeginPositionP24937355) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1368) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24937MF_04048356, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048356) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048356, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1368), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24937MF_04048356, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048356) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048356, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1368), '}'), '')))), '[^-]', ''))) AS ?step2369) .
BIND(((?step2369 + ?targetMotifMatchRegionMatchBeginPositionMF_04048357) - 1) AS ?thisPositionOn108) .
BIND(?this AS ?pfs1t370) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn107))) AS ?pfsb105) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn108))) AS ?pfse106) .
FILTER (REGEX('[KR][KR][ARNDCQEGHILKMFPSTWYVBZJUOX][KR][ARNDCQEGHILKMFPSTWYVBZJUOX]', SUBSTR(?thisSequenceValue, ?thisPositionOn107, (?thisPositionOn108 - ?thisPositionOn107)))) .
BIND(URI(CONCAT(STR(?this), '#MF_04048a104')) AS ?annotation104) .
BIND(?this AS ?pfs103) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch375 faldo:location ?templateMotifSequenceMatchRegionP24937376 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP24937378 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP24937MF_04048371 .
?templateMotifSequenceMatchRegionP24937376 faldo:begin ?templateMotifSequenceMatchBeginP24937377 .
?templateMotifSequenceMatchBeginP24937377 faldo:position ?templateMotifSequenceMatchBeginPositionP24937372 ;
faldo:reference isoform:P24937-1 .
?templateMotifSequenceProfileAlignmentOperationP24937378 edam:has_input signature:MF_04048 ;
rdf:type edam:operation_0300 .
?targetMotifMatch379 faldo:location ?targetMotifMatchRegionMatch380 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04048382 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP24937MF_04048373 .
?targetMotifMatchRegionMatch380 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04048381 .
?targetMotifMatchRegionMatchBeginMF_04048381 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04048374 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04048382 edam:has_input signature:MF_04048 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24937MF_04048371, 1, (STRLEN(?templateMotifCigarP24937MF_04048371) - STRLEN(REPLACE(?templateMotifCigarP24937MF_04048371, CONCAT('^(?:-*[^-]){', STR(((148 - ?templateMotifSequenceMatchBeginPositionP24937372) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1383) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24937MF_04048373, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048373) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048373, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1383), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24937MF_04048373, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048373) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048373, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1383), '}'), '')))), '[^-]', ''))) AS ?step2384) .
BIND(((?step2384 + ?targetMotifMatchRegionMatchBeginPositionMF_04048374) - 1) AS ?thisPositionOn113) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24937MF_04048371, 1, (STRLEN(?templateMotifCigarP24937MF_04048371) - STRLEN(REPLACE(?templateMotifCigarP24937MF_04048371, CONCAT('^(?:-*[^-]){', STR(((151 - ?templateMotifSequenceMatchBeginPositionP24937372) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1385) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24937MF_04048373, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048373) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048373, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1385), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24937MF_04048373, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048373) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048373, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1385), '}'), '')))), '[^-]', ''))) AS ?step2386) .
BIND(((?step2386 + ?targetMotifMatchRegionMatchBeginPositionMF_04048374) - 1) AS ?thisPositionOn114) .
BIND(?this AS ?pfs1t387) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn113))) AS ?pfsb111) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn114))) AS ?pfse112) .
FILTER (REGEX('PP[ARNDCQEGHILKMFPSTWYVBZJUOX]Y', SUBSTR(?thisSequenceValue, ?thisPositionOn113, (?thisPositionOn114 - ?thisPositionOn113)))) .
BIND(URI(CONCAT(STR(?this), '#MF_04048a110')) AS ?annotation110) .
BIND(?this AS ?pfs109) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch392 faldo:location ?templateMotifSequenceMatchRegionP24937393 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP24937395 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP24937MF_04048388 .
?templateMotifSequenceMatchRegionP24937393 faldo:begin ?templateMotifSequenceMatchBeginP24937394 .
?templateMotifSequenceMatchBeginP24937394 faldo:position ?templateMotifSequenceMatchBeginPositionP24937389 ;
faldo:reference isoform:P24937-1 .
?templateMotifSequenceProfileAlignmentOperationP24937395 edam:has_input signature:MF_04048 ;
rdf:type edam:operation_0300 .
?targetMotifMatch396 faldo:location ?targetMotifMatchRegionMatch397 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04048399 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP24937MF_04048390 .
?targetMotifMatchRegionMatch397 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04048398 .
?targetMotifMatchRegionMatchBeginMF_04048398 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04048391 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04048399 edam:has_input signature:MF_04048 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24937MF_04048388, 1, (STRLEN(?templateMotifCigarP24937MF_04048388) - STRLEN(REPLACE(?templateMotifCigarP24937MF_04048388, CONCAT('^(?:-*[^-]){', STR(((245 - ?templateMotifSequenceMatchBeginPositionP24937389) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1400) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24937MF_04048390, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048390) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048390, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1400), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24937MF_04048390, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048390) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048390, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1400), '}'), '')))), '[^-]', ''))) AS ?step2401) .
BIND(((?step2401 + ?targetMotifMatchRegionMatchBeginPositionMF_04048391) - 1) AS ?thisPositionOn119) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24937MF_04048388, 1, (STRLEN(?templateMotifCigarP24937MF_04048388) - STRLEN(REPLACE(?templateMotifCigarP24937MF_04048388, CONCAT('^(?:-*[^-]){', STR(((248 - ?templateMotifSequenceMatchBeginPositionP24937389) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1402) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24937MF_04048390, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048390) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048390, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1402), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24937MF_04048390, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048390) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048390, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1402), '}'), '')))), '[^-]', ''))) AS ?step2403) .
BIND(((?step2403 + ?targetMotifMatchRegionMatchBeginPositionMF_04048391) - 1) AS ?thisPositionOn120) .
BIND(?this AS ?pfs1t404) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn119))) AS ?pfsb117) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn120))) AS ?pfse118) .
FILTER (REGEX('[KR][KR][KR][KR]', SUBSTR(?thisSequenceValue, ?thisPositionOn119, (?thisPositionOn120 - ?thisPositionOn119)))) .
BIND(URI(CONCAT(STR(?this), '#MF_04048a116')) AS ?annotation116) .
BIND(?this AS ?pfs115) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch409 faldo:location ?templateMotifSequenceMatchRegionP24937410 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP24937412 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP24937MF_04048405 .
?templateMotifSequenceMatchRegionP24937410 faldo:begin ?templateMotifSequenceMatchBeginP24937411 .
?templateMotifSequenceMatchBeginP24937411 faldo:position ?templateMotifSequenceMatchBeginPositionP24937406 ;
faldo:reference isoform:P24937-1 .
?templateMotifSequenceProfileAlignmentOperationP24937412 edam:has_input signature:MF_04048 ;
rdf:type edam:operation_0300 .
?targetMotifMatch413 faldo:location ?targetMotifMatchRegionMatch414 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04048416 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP24937MF_04048407 .
?targetMotifMatchRegionMatch414 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04048415 .
?targetMotifMatchRegionMatchBeginMF_04048415 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04048408 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04048416 edam:has_input signature:MF_04048 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24937MF_04048405, 1, (STRLEN(?templateMotifCigarP24937MF_04048405) - STRLEN(REPLACE(?templateMotifCigarP24937MF_04048405, CONCAT('^(?:-*[^-]){', STR(((124 - ?templateMotifSequenceMatchBeginPositionP24937406) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1417) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24937MF_04048407, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048407) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048407, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1417), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24937MF_04048407, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048407) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048407, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1417), '}'), '')))), '[^-]', ''))) AS ?step2418) .
BIND(((?step2418 + ?targetMotifMatchRegionMatchBeginPositionMF_04048408) - 1) AS ?thisPositionOn125) .
BIND(?thisPositionOn125 AS ?thisPositionOn126) .
BIND(?this AS ?pfs1t419) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn125))) AS ?pfsb123) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn126))) AS ?pfse124) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn125, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_04048a122')) AS ?annotation122) .
BIND(?this AS ?pfs121) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch424 faldo:location ?templateMotifSequenceMatchRegionP24937425 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP24937427 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP24937MF_04048420 .
?templateMotifSequenceMatchRegionP24937425 faldo:begin ?templateMotifSequenceMatchBeginP24937426 .
?templateMotifSequenceMatchBeginP24937426 faldo:position ?templateMotifSequenceMatchBeginPositionP24937421 ;
faldo:reference isoform:P24937-1 .
?templateMotifSequenceProfileAlignmentOperationP24937427 edam:has_input signature:MF_04048 ;
rdf:type edam:operation_0300 .
?targetMotifMatch428 faldo:location ?targetMotifMatchRegionMatch429 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04048431 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP24937MF_04048422 .
?targetMotifMatchRegionMatch429 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04048430 .
?targetMotifMatchRegionMatchBeginMF_04048430 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04048423 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04048431 edam:has_input signature:MF_04048 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24937MF_04048420, 1, (STRLEN(?templateMotifCigarP24937MF_04048420) - STRLEN(REPLACE(?templateMotifCigarP24937MF_04048420, CONCAT('^(?:-*[^-]){', STR(((143 - ?templateMotifSequenceMatchBeginPositionP24937421) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1432) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24937MF_04048422, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048422) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048422, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1432), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24937MF_04048422, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048422) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048422, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1432), '}'), '')))), '[^-]', ''))) AS ?step2433) .
BIND(((?step2433 + ?targetMotifMatchRegionMatchBeginPositionMF_04048423) - 1) AS ?thisPositionOn131) .
BIND(?thisPositionOn131 AS ?thisPositionOn132) .
BIND(?this AS ?pfs1t434) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn131))) AS ?pfsb129) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn132))) AS ?pfse130) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn131, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_04048a128')) AS ?annotation128) .
BIND(?this AS ?pfs127) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch439 faldo:location ?templateMotifSequenceMatchRegionP24937440 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP24937442 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP24937MF_04048435 .
?templateMotifSequenceMatchRegionP24937440 faldo:begin ?templateMotifSequenceMatchBeginP24937441 .
?templateMotifSequenceMatchBeginP24937441 faldo:position ?templateMotifSequenceMatchBeginPositionP24937436 ;
faldo:reference isoform:P24937-1 .
?templateMotifSequenceProfileAlignmentOperationP24937442 edam:has_input signature:MF_04048 ;
rdf:type edam:operation_0300 .
?targetMotifMatch443 faldo:location ?targetMotifMatchRegionMatch444 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04048446 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP24937MF_04048437 .
?targetMotifMatchRegionMatch444 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04048445 .
?targetMotifMatchRegionMatchBeginMF_04048445 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04048438 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04048446 edam:has_input signature:MF_04048 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP24937MF_04048435, 1, (STRLEN(?templateMotifCigarP24937MF_04048435) - STRLEN(REPLACE(?templateMotifCigarP24937MF_04048435, CONCAT('^(?:-*[^-]){', STR(((249 - ?templateMotifSequenceMatchBeginPositionP24937436) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1447) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP24937MF_04048437, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048437) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048437, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1447), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP24937MF_04048437, 1, (STRLEN(?targetMotifMatchCigarP24937MF_04048437) - STRLEN(REPLACE(?targetMotifMatchCigarP24937MF_04048437, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1447), '}'), '')))), '[^-]', ''))) AS ?step2448) .
BIND(((?step2448 + ?targetMotifMatchRegionMatchBeginPositionMF_04048438) - 1) AS ?thisPositionOn137) .
BIND(?thisPositionOn137 AS ?thisPositionOn138) .
BIND(?this AS ?pfs1t449) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn137))) AS ?pfsb135) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn138))) AS ?pfse136) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn137, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_04048a134')) AS ?annotation134) .
BIND(?this AS ?pfs133) .
}
}
"xsd:string |
