| http://purl.uniprot.org/unirules/MF_04071#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:926390 up:source unirule:MF_04071 .
_:926391 up:source unirule:MF_04071 .
_:926392 up:source unirule:MF_04071 .
_:926393 up:source unirule:MF_04071 .
_:926394 up:source unirule:MF_04071 .
_:926395 up:source unirule:MF_04071 .
_:926396 up:source unirule:MF_04071 .
_:926397 up:source unirule:MF_04071 .
_:926398 up:source unirule:MF_04071 .
_:926399 up:source unirule:MF_04071 .
_:926400 up:source unirule:MF_04071 .
_:926401 up:source unirule:MF_04071 .
_:926402 up:source unirule:MF_04071 .
_:926403 up:source unirule:MF_04071 .
_:926404 up:source unirule:MF_04071 .
_:926405 up:source unirule:MF_04071 .
_:926406 up:source unirule:MF_04071 .
_:926407 up:source unirule:MF_04071 .
_:926408 up:source unirule:MF_04071 .
_:926409 up:source unirule:MF_04071 .
_:926410 up:source unirule:MF_04071 .
_:926411 up:source unirule:MF_04071 .
_:926412 up:source unirule:MF_04071 .
_:926413 up:source unirule:MF_04071 .
_:926414 up:source unirule:MF_04071 .
_:926415 up:source unirule:MF_04071 .
_:926416 up:source unirule:MF_04071 .
_:926417 up:source unirule:MF_04071 .
_:926418 up:source unirule:MF_04071 .
_:926419 up:source unirule:MF_04071 .
_:926420 up:source unirule:MF_04071 .
_:926421 up:source unirule:MF_04071 .
_:926422 up:source unirule:MF_04071 .
_:926423 up:source unirule:MF_04071 .
_:926424 up:source unirule:MF_04071 .
_:926425 up:source unirule:MF_04071 .
_:926426 up:source unirule:MF_04071 .
_:926427 up:source unirule:MF_04071 .
_:926428 up:source unirule:MF_04071 .
_:926429 up:source unirule:MF_04071 .
_:926430 up:source unirule:MF_04071 .
_:926431 up:source unirule:MF_04071 .
_:926432 up:source unirule:MF_04071 .
_:926433 up:source unirule:MF_04071 .
_:926434 up:source unirule:MF_04071 .
_:926435 up:source unirule:MF_04071 .
_:926436 up:source unirule:MF_04071 .
_:926437 up:source unirule:MF_04071 .
_:926438 up:source unirule:MF_04071 .
_:926439 up:source unirule:MF_04071 .
_:926440 up:source unirule:MF_04071 .
_:926441 up:source unirule:MF_04071 .
_:926442 up:source unirule:MF_04071 .
_:926443 up:source unirule:MF_04071 .
_:926444 up:source unirule:MF_04071 .
_:926445 up:source unirule:MF_04071 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation6 ,
?annotation7 ,
?annotation8 ,
?annotation11 ,
?annotation12 ,
?annotation13 ;
up:classifiedWith GO:0004308 ,
GO:0016020 ,
GO:0020002 ,
GO:0046761 ,
GO:0046872 ,
GO:0055036 ,
keyword:1015 ,
keyword:1032 ,
keyword:1043 ,
keyword:106 ,
keyword:1133 ,
keyword:325 ,
keyword:326 ,
keyword:378 ,
keyword:472 ,
keyword:479 ,
keyword:735 ,
keyword:812 ,
keyword:946 ;
up:recommendedName ?name0 .
?name0 up:ecName '3.2.1.18' ;
up:fullName 'Neuraminidase' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'NA' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the removal of terminal sialic acid residues from viral and cellular glycoconjugates. Cleaves off the terminal sialic acids on the glycosylated HA during virus budding to facilitate virus release. Additionally helps virus spread through the circulation by further removing sialic acids from the cell surface. These cleavages prevent self-aggregation and ensure the efficient spread of the progeny virus from cell to cell. Otherwise, infection would be limited to one round of replication. Described as a receptor-destroying enzyme because it cleaves a terminal sialic acid from the cellular receptors. May facilitate viral invasion of the upper airways by cleaving the sialic acid moities on the mucin of the airway epithelial cells. Likely to plays a role in the budding process through its association with lipid rafts during intracellular transport. May additionally display a raft-association independent effect on budding. Plays a role in the determination of host range restriction on replication and virulence. Sialidase activity in late endosome/lysosome traffic seems to enhance virus replication.' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:enzymeClass .
?annotation5 up:cofactor chebi:29108 ;
rdf:type up:Cofactor_Annotation .
?annotation6 a up:Activity_Regulation_Annotation ;
rdfs:comment 'Inhibited by the neuraminidase inhibitors zanamivir (Relenza) and oseltamivir (Tamiflu). These drugs interfere with the release of progeny virus from infected cells and are effective against all influenza strains. Resistance to neuraminidase inhibitors is quite rare.' .
?annotation7 a up:Subunit_Annotation ;
rdfs:comment 'Homotetramer.' .
?annotation8 a up:Subcellular_Location_Annotation ;
rdfs:comment 'Preferentially accumulates at the apical plasma membrane in infected polarized epithelial cells, which is the virus assembly site. Uses lipid rafts for cell surface transport and apical sorting. In the virion, forms a mushroom-shaped spike on the surface of the membrane' .
?annotation8li9 up:cellularComponent .
?annotation8li10 up:cellularComponent .
?annotation11 a up:Domain_Annotation ;
rdfs:comment 'Intact N-terminus is essential for virion morphogenesis. Possess two apical sorting signals, one in the ectodomain, which is likely to be a glycan, and the other in the transmembrane domain. The transmembrane domain also plays a role in lipid raft association.' .
?annotation12 a up:PTM_Annotation ;
rdfs:comment 'N-glycosylated.' .
?annotation13 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the glycosyl hydrolase 34 family.' .
?pfs14 up:annotation ?annotation15 .
?annotation15 faldo:begin ?pfsb16 ;
faldo:end ?pfse17 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Involved in apical transport and lipid raft association' .
?pfsb16 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfse17 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfs20 up:annotation ?annotation21 .
?annotation21 faldo:begin ?pfsb22 ;
faldo:end ?pfse23 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Hypervariable stalk region' .
?pfsb22 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfse23 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?pfs26 up:annotation ?annotation27 .
?annotation27 faldo:begin ?pfsb28 ;
faldo:end ?pfse29 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Head of neuraminidase' .
?pfsb28 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?pfse29 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?pfs32 up:annotation ?annotation33 .
?annotation33 faldo:begin ?pfsb34 ;
faldo:end ?pfse35 ;
up:ligand ?ligand36 ;
rdf:type up:Binding_Site_Annotation .
?pfsb34 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?pfse35 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?ligand36 rdfs:subClassOf ?molecule37 .
?molecule37 rdfs:label 'substrate' .
?pfs40 up:annotation ?annotation41 .
?annotation41 faldo:begin ?pfsb42 ;
faldo:end ?pfse43 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton donor/acceptor' .
?pfsb42 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?pfse43 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?pfs46 up:annotation ?annotation47 .
?annotation47 faldo:begin ?pfsb48 ;
faldo:end ?pfse49 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Nucleophile' .
?pfsb48 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?pfse49 faldo:position ?thisPositionOn51 ;
rdf:type faldo:ExactPosition .
?pfs52 up:annotation ?annotation53 .
?annotation53 faldo:begin ?pfsb54 ;
faldo:end ?pfse55 ;
up:ligand ?ligand56 ;
rdf:type up:Binding_Site_Annotation .
?pfsb54 faldo:position ?thisPositionOn57 ;
rdf:type faldo:ExactPosition .
?pfse55 faldo:position ?thisPositionOn58 ;
rdf:type faldo:ExactPosition .
?ligand56 rdfs:subClassOf chebi:29108 .
?pfs59 up:annotation ?annotation60 .
?annotation60 faldo:begin ?pfsb61 ;
faldo:end ?pfse62 ;
up:ligand ?ligand63 ;
rdf:type up:Binding_Site_Annotation .
?pfsb61 faldo:position ?thisPositionOn64 ;
rdf:type faldo:ExactPosition .
?pfse62 faldo:position ?thisPositionOn65 ;
rdf:type faldo:ExactPosition .
?ligand63 rdfs:subClassOf chebi:29108 .
?pfs66 up:annotation ?annotation67 .
?annotation67 faldo:begin ?pfsb68 ;
faldo:end ?pfse69 ;
up:ligand ?ligand70 ;
rdf:type up:Binding_Site_Annotation .
?pfsb68 faldo:position ?thisPositionOn71 ;
rdf:type faldo:ExactPosition .
?pfse69 faldo:position ?thisPositionOn72 ;
rdf:type faldo:ExactPosition .
?ligand70 rdfs:subClassOf chebi:29108 .
?pfs73 up:annotation ?annotation74 .
?annotation74 faldo:begin ?pfsb75 ;
faldo:end ?pfse76 ;
up:ligand ?ligand77 ;
rdf:type up:Binding_Site_Annotation .
?pfsb75 faldo:position ?thisPositionOn78 ;
rdf:type faldo:ExactPosition .
?pfse76 faldo:position ?thisPositionOn79 ;
rdf:type faldo:ExactPosition .
?ligand77 rdfs:subClassOf chebi:29108 .
?pfs80 up:annotation ?annotation81 .
?annotation81 faldo:begin ?pfsb82 ;
faldo:end ?pfse83 ;
up:ligand ?ligand84 ;
rdf:type up:Binding_Site_Annotation .
?pfsb82 faldo:position ?thisPositionOn86 ;
rdf:type faldo:ExactPosition .
?pfse83 faldo:position ?thisPositionOn87 ;
rdf:type faldo:ExactPosition .
?ligand84 rdfs:subClassOf ?molecule85 .
?molecule85 rdfs:label 'substrate' .
?pfs88 up:annotation ?annotation89 .
?annotation89 faldo:begin ?pfsb90 ;
faldo:end ?pfse91 ;
up:ligand ?ligand92 ;
rdf:type up:Binding_Site_Annotation .
?pfsb90 faldo:position ?thisPositionOn94 ;
rdf:type faldo:ExactPosition .
?pfse91 faldo:position ?thisPositionOn95 ;
rdf:type faldo:ExactPosition .
?ligand92 rdfs:subClassOf ?molecule93 .
?molecule93 rdfs:label 'substrate' .
?pfs96 up:annotation ?annotation97 .
?annotation97 faldo:begin ?pfsb98 ;
faldo:end ?pfse99 ;
up:ligand ?ligand100 ;
rdf:type up:Binding_Site_Annotation .
?pfsb98 faldo:position ?thisPositionOn102 ;
rdf:type faldo:ExactPosition .
?pfse99 faldo:position ?thisPositionOn103 ;
rdf:type faldo:ExactPosition .
?ligand100 rdfs:subClassOf ?molecule101 .
?molecule101 rdfs:label 'substrate' .
?pfs104 up:annotation ?annotation105 .
?annotation105 faldo:begin ?pfsb106 ;
faldo:end ?pfse107 ;
up:ligand ?ligand108 ;
rdf:type up:Binding_Site_Annotation .
?pfsb106 faldo:position ?thisPositionOn110 ;
rdf:type faldo:ExactPosition .
?pfse107 faldo:position ?thisPositionOn111 ;
rdf:type faldo:ExactPosition .
?ligand108 rdfs:subClassOf ?molecule109 .
?molecule109 rdfs:label 'substrate' .
?pfs112 up:annotation ?annotation113 .
?annotation113 faldo:begin ?pfsb114 ;
faldo:end ?pfse115 ;
rdf:type up:Disulfide_Bond_Annotation .
?pfsb114 faldo:position ?thisPositionOn116 ;
rdf:type faldo:ExactPosition .
?pfse115 faldo:position ?thisPositionOn117 ;
rdf:type faldo:ExactPosition .
?pfs118 up:annotation ?annotation119 .
?annotation119 faldo:begin ?pfsb120 ;
faldo:end ?pfse121 ;
rdf:type up:Disulfide_Bond_Annotation .
?pfsb120 faldo:position ?thisPositionOn122 ;
rdf:type faldo:ExactPosition .
?pfse121 faldo:position ?thisPositionOn123 ;
rdf:type faldo:ExactPosition .
?pfs124 up:annotation ?annotation125 .
?annotation125 faldo:begin ?pfsb126 ;
faldo:end ?pfse127 ;
rdf:type up:Disulfide_Bond_Annotation .
?pfsb126 faldo:position ?thisPositionOn128 ;
rdf:type faldo:ExactPosition .
?pfse127 faldo:position ?thisPositionOn129 ;
rdf:type faldo:ExactPosition .
?pfs130 up:annotation ?annotation131 .
?annotation131 faldo:begin ?pfsb132 ;
faldo:end ?pfse133 ;
rdf:type up:Disulfide_Bond_Annotation .
?pfsb132 faldo:position ?thisPositionOn134 ;
rdf:type faldo:ExactPosition .
?pfse133 faldo:position ?thisPositionOn135 ;
rdf:type faldo:ExactPosition .
?pfs136 up:annotation ?annotation137 .
?annotation137 faldo:begin ?pfsb138 ;
faldo:end ?pfse139 ;
rdf:type up:Disulfide_Bond_Annotation .
?pfsb138 faldo:position ?thisPositionOn140 ;
rdf:type faldo:ExactPosition .
?pfse139 faldo:position ?thisPositionOn141 ;
rdf:type faldo:ExactPosition .
?pfs142 up:annotation ?annotation143 .
?annotation143 faldo:begin ?pfsb144 ;
faldo:end ?pfse145 ;
rdf:type up:Disulfide_Bond_Annotation .
?pfsb144 faldo:position ?thisPositionOn146 ;
rdf:type faldo:ExactPosition .
?pfse145 faldo:position ?thisPositionOn147 ;
rdf:type faldo:ExactPosition .
?pfs148 up:annotation ?annotation149 .
?annotation149 faldo:begin ?pfsb150 ;
faldo:end ?pfse151 ;
rdf:type up:Disulfide_Bond_Annotation .
?pfsb150 faldo:position ?thisPositionOn152 ;
rdf:type faldo:ExactPosition .
?pfse151 faldo:position ?thisPositionOn153 ;
rdf:type faldo:ExactPosition .
?pfs154 up:annotation ?annotation155 .
?annotation155 faldo:begin ?pfsb156 ;
faldo:end ?pfse157 ;
rdf:type up:Disulfide_Bond_Annotation .
?pfsb156 faldo:position ?thisPositionOn158 ;
rdf:type faldo:ExactPosition .
?pfse157 faldo:position ?thisPositionOn159 ;
rdf:type faldo:ExactPosition .
?pfs160 up:annotation ?annotation161 .
?annotation161 faldo:begin ?pfsb162 ;
faldo:end ?pfse163 ;
rdf:type up:Disulfide_Bond_Annotation .
?pfsb162 faldo:position ?thisPositionOn164 ;
rdf:type faldo:ExactPosition .
?pfse163 faldo:position ?thisPositionOn165 ;
rdf:type faldo:ExactPosition .
?sam166 up:classifiedWith keyword:1133 ,
keyword:472 ,
keyword:812 .
?transmembrane167 faldo:begin ?transmembraneb168 ;
faldo:end ?transmembranee169 .
?transmembraneb168 faldo:position ?transmembranebp170 .
?transmembranee169 faldo:position ?transmembraneep171 .
?keyword172 up:range ?transmembrane167 .
?keyword173 up:range ?transmembrane167 .
?keyword174 up:range ?transmembrane167 .
_:926446 a rdf:Statement ;
up:attribution _:926390 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:926447 a rdf:Statement ;
up:attribution _:926391 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:926448 a rdf:Statement ;
up:attribution _:926392 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:926449 a rdf:Statement ;
up:attribution _:926393 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:926450 a rdf:Statement ;
up:attribution _:926394 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:926451 a rdf:Statement ;
up:attribution _:926395 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:926452 a rdf:Statement ;
up:attribution _:926396 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:926453 a rdf:Statement ;
up:attribution _:926397 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:926454 a rdf:Statement ;
up:attribution _:926398 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:926455 a rdf:Statement ;
up:attribution _:926399 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:926456 a rdf:Statement ;
up:attribution _:926400 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:926457 a rdf:Statement ;
up:attribution _:926401 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:106 .
_:926458 a rdf:Statement ;
up:attribution _:926402 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1015 .
_:926459 a rdf:Statement ;
up:attribution _:926403 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:325 .
_:926460 a rdf:Statement ;
up:attribution _:926404 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:326 .
_:926461 a rdf:Statement ;
up:attribution _:926405 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1032 .
_:926462 a rdf:Statement ;
up:attribution _:926406 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1043 .
_:926463 a rdf:Statement ;
up:attribution _:926407 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:926464 a rdf:Statement ;
up:attribution _:926408 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:926465 a rdf:Statement ;
up:attribution _:926409 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:926466 a rdf:Statement ;
up:attribution _:926410 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:735 .
_:926467 a rdf:Statement ;
up:attribution _:926411 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:812 .
_:926468 a rdf:Statement ;
up:attribution _:926412 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1133 .
_:926469 a rdf:Statement ;
up:attribution _:926413 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:946 .
_:926470 a rdf:Statement ;
up:attribution _:926414 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0020002 .
_:926471 a rdf:Statement ;
up:attribution _:926415 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016020 .
_:926472 a rdf:Statement ;
up:attribution _:926416 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0055036 .
_:926473 a rdf:Statement ;
up:attribution _:926417 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004308 .
_:926474 a rdf:Statement ;
up:attribution _:926418 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0046872 .
_:926475 a rdf:Statement ;
up:attribution _:926419 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0046761 .
_:926476 a rdf:Statement ;
up:source unirule:MF_04071 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:926477 a rdf:Statement ;
up:attribution _:926420 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:926478 a rdf:Statement ;
up:source unirule:MF_04071 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:926479 a rdf:Statement ;
up:attribution _:926421 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:926480 a rdf:Statement ;
up:source unirule:MF_04071 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:926481 a rdf:Statement ;
up:attribution _:926422 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:926482 a rdf:Statement ;
up:source unirule:MF_04071 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:926483 a rdf:Statement ;
up:attribution _:926423 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:926484 a rdf:Statement ;
up:source unirule:MF_04071 ;
rdf:subject ?pfs40 ;
rdf:predicate up:annotation ;
rdf:object ?annotation41 .
_:926485 a rdf:Statement ;
up:attribution _:926424 ;
rdf:subject ?pfs40 ;
rdf:predicate up:annotation ;
rdf:object ?annotation41 .
_:926486 a rdf:Statement ;
up:source unirule:MF_04071 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
_:926487 a rdf:Statement ;
up:attribution _:926425 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
_:926488 a rdf:Statement ;
up:source unirule:MF_04071 ;
rdf:subject ?pfs52 ;
rdf:predicate up:annotation ;
rdf:object ?annotation53 .
_:926489 a rdf:Statement ;
up:attribution _:926426 ;
rdf:subject ?pfs52 ;
rdf:predicate up:annotation ;
rdf:object ?annotation53 .
_:926490 a rdf:Statement ;
up:source unirule:MF_04071 ;
rdf:subject ?pfs59 ;
rdf:predicate up:annotation ;
rdf:object ?annotation60 .
_:926491 a rdf:Statement ;
up:attribution _:926427 ;
rdf:subject ?pfs59 ;
rdf:predicate up:annotation ;
rdf:object ?annotation60 .
_:926492 a rdf:Statement ;
up:source unirule:MF_04071 ;
rdf:subject ?pfs66 ;
rdf:predicate up:annotation ;
rdf:object ?annotation67 .
_:926493 a rdf:Statement ;
up:attribution _:926428 ;
rdf:subject ?pfs66 ;
rdf:predicate up:annotation ;
rdf:object ?annotation67 .
_:926494 a rdf:Statement ;
up:source unirule:MF_04071 ;
rdf:subject ?pfs73 ;
rdf:predicate up:annotation ;
rdf:object ?annotation74 .
_:926495 a rdf:Statement ;
up:attribution _:926429 ;
rdf:subject ?pfs73 ;
rdf:predicate up:annotation ;
rdf:object ?annotation74 .
_:926496 a rdf:Statement ;
up:source unirule:MF_04071 ;
rdf:subject ?pfs80 ;
rdf:predicate up:annotation ;
rdf:object ?annotation81 .
_:926497 a rdf:Statement ;
up:attribution _:926430 ;
rdf:subject ?pfs80 ;
rdf:predicate up:annotation ;
rdf:object ?annotation81 .
_:926498 a rdf:Statement ;
up:source unirule:MF_04071 ;
rdf:subject ?pfs88 ;
rdf:predicate up:annotation ;
rdf:object ?annotation89 .
_:926499 a rdf:Statement ;
up:attribution _:926431 ;
rdf:subject ?pfs88 ;
rdf:predicate up:annotation ;
rdf:object ?annotation89 .
_:926500 a rdf:Statement ;
up:source unirule:MF_04071 ;
rdf:subject ?pfs96 ;
rdf:predicate up:annotation ;
rdf:object ?annotation97 .
_:926501 a rdf:Statement ;
up:attribution _:926432 ;
rdf:subject ?pfs96 ;
rdf:predicate up:annotation ;
rdf:object ?annotation97 .
_:926502 a rdf:Statement ;
up:source unirule:MF_04071 ;
rdf:subject ?pfs104 ;
rdf:predicate up:annotation ;
rdf:object ?annotation105 .
_:926503 a rdf:Statement ;
up:attribution _:926433 ;
rdf:subject ?pfs104 ;
rdf:predicate up:annotation ;
rdf:object ?annotation105 .
_:926504 a rdf:Statement ;
up:source unirule:MF_04071 ;
rdf:subject ?pfs112 ;
rdf:predicate up:annotation ;
rdf:object ?annotation113 .
_:926505 a rdf:Statement ;
up:attribution _:926434 ;
rdf:subject ?pfs112 ;
rdf:predicate up:annotation ;
rdf:object ?annotation113 .
_:926506 a rdf:Statement ;
up:source unirule:MF_04071 ;
rdf:subject ?pfs118 ;
rdf:predicate up:annotation ;
rdf:object ?annotation119 .
_:926507 a rdf:Statement ;
up:attribution _:926435 ;
rdf:subject ?pfs118 ;
rdf:predicate up:annotation ;
rdf:object ?annotation119 .
_:926508 a rdf:Statement ;
up:source unirule:MF_04071 ;
rdf:subject ?pfs124 ;
rdf:predicate up:annotation ;
rdf:object ?annotation125 .
_:926509 a rdf:Statement ;
up:attribution _:926436 ;
rdf:subject ?pfs124 ;
rdf:predicate up:annotation ;
rdf:object ?annotation125 .
_:926510 a rdf:Statement ;
up:source unirule:MF_04071 ;
rdf:subject ?pfs130 ;
rdf:predicate up:annotation ;
rdf:object ?annotation131 .
_:926511 a rdf:Statement ;
up:attribution _:926437 ;
rdf:subject ?pfs130 ;
rdf:predicate up:annotation ;
rdf:object ?annotation131 .
_:926512 a rdf:Statement ;
up:source unirule:MF_04071 ;
rdf:subject ?pfs136 ;
rdf:predicate up:annotation ;
rdf:object ?annotation137 .
_:926513 a rdf:Statement ;
up:attribution _:926438 ;
rdf:subject ?pfs136 ;
rdf:predicate up:annotation ;
rdf:object ?annotation137 .
_:926514 a rdf:Statement ;
up:source unirule:MF_04071 ;
rdf:subject ?pfs142 ;
rdf:predicate up:annotation ;
rdf:object ?annotation143 .
_:926515 a rdf:Statement ;
up:attribution _:926439 ;
rdf:subject ?pfs142 ;
rdf:predicate up:annotation ;
rdf:object ?annotation143 .
_:926516 a rdf:Statement ;
up:source unirule:MF_04071 ;
rdf:subject ?pfs148 ;
rdf:predicate up:annotation ;
rdf:object ?annotation149 .
_:926517 a rdf:Statement ;
up:attribution _:926440 ;
rdf:subject ?pfs148 ;
rdf:predicate up:annotation ;
rdf:object ?annotation149 .
_:926518 a rdf:Statement ;
up:source unirule:MF_04071 ;
rdf:subject ?pfs154 ;
rdf:predicate up:annotation ;
rdf:object ?annotation155 .
_:926519 a rdf:Statement ;
up:attribution _:926441 ;
rdf:subject ?pfs154 ;
rdf:predicate up:annotation ;
rdf:object ?annotation155 .
_:926520 a rdf:Statement ;
up:source unirule:MF_04071 ;
rdf:subject ?pfs160 ;
rdf:predicate up:annotation ;
rdf:object ?annotation161 .
_:926521 a rdf:Statement ;
up:attribution _:926442 ;
rdf:subject ?pfs160 ;
rdf:predicate up:annotation ;
rdf:object ?annotation161 .
_:926522 a rdf:Statement ;
up:attribution _:926443 ;
rdf:subject ?sam166 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:926523 a rdf:Statement ;
up:attribution _:926444 ;
rdf:subject ?sam166 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:812 .
_:926524 a rdf:Statement ;
up:attribution _:926445 ;
rdf:subject ?sam166 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1133 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_04071
#Rule MF_04071 Created by:? on:2017-04-18 Modified by:Catherine Rivoire on:2024-11-05
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_04071 .
?thisOrganism rdfs:subClassOf+ taxon:11308 .
BIND(URI(CONCAT(STR(?this), '#MF_04071a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_04071a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_04071a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_04071a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_04071a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_04071a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_04071a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_04071a11')) AS ?annotation11) .
BIND(URI(CONCAT(STR(?this), '#MF_04071a12')) AS ?annotation12) .
BIND(URI(CONCAT(STR(?this), '#MF_04071a13')) AS ?annotation13) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch179 faldo:location ?templateMotifSequenceMatchRegionP03468180 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP03468182 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP03468MF_04071175 .
?templateMotifSequenceMatchRegionP03468180 faldo:begin ?templateMotifSequenceMatchBeginP03468181 .
?templateMotifSequenceMatchBeginP03468181 faldo:position ?templateMotifSequenceMatchBeginPositionP03468176 ;
faldo:reference isoform:P03468-1 .
?templateMotifSequenceProfileAlignmentOperationP03468182 edam:has_input signature:MF_04071 ;
rdf:type edam:operation_0300 .
?targetMotifMatch183 faldo:location ?targetMotifMatchRegionMatch184 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04071186 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP03468MF_04071177 .
?targetMotifMatchRegionMatch184 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04071185 .
?targetMotifMatchRegionMatchBeginMF_04071185 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04071178 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04071186 edam:has_input signature:MF_04071 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03468MF_04071175, 1, (STRLEN(?templateMotifCigarP03468MF_04071175) - STRLEN(REPLACE(?templateMotifCigarP03468MF_04071175, CONCAT('^(?:-*[^-]){', STR(((11 - ?templateMotifSequenceMatchBeginPositionP03468176) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1187) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03468MF_04071177, 1, (STRLEN(?targetMotifMatchCigarP03468MF_04071177) - STRLEN(REPLACE(?targetMotifMatchCigarP03468MF_04071177, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1187), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03468MF_04071177, 1, (STRLEN(?targetMotifMatchCigarP03468MF_04071177) - STRLEN(REPLACE(?targetMotifMatchCigarP03468MF_04071177, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1187), '}'), '')))), '[^-]', ''))) AS ?step2188) .
BIND(((?step2188 + ?targetMotifMatchRegionMatchBeginPositionMF_04071178) - 1) AS ?thisPositionOn18) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03468MF_04071175, 1, (STRLEN(?templateMotifCigarP03468MF_04071175) - STRLEN(REPLACE(?templateMotifCigarP03468MF_04071175, CONCAT('^(?:-*[^-]){', STR(((33 - ?templateMotifSequenceMatchBeginPositionP03468176) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1189) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03468MF_04071177, 1, (STRLEN(?targetMotifMatchCigarP03468MF_04071177) - STRLEN(REPLACE(?targetMotifMatchCigarP03468MF_04071177, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1189), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03468MF_04071177, 1, (STRLEN(?targetMotifMatchCigarP03468MF_04071177) - STRLEN(REPLACE(?targetMotifMatchCigarP03468MF_04071177, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1189), '}'), '')))), '[^-]', ''))) AS ?step2190) .
BIND(((?step2190 + ?targetMotifMatchRegionMatchBeginPositionMF_04071178) - 1) AS ?thisPositionOn19) .
BIND(?this AS ?pfs1t191) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb16) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse17) .
FILTER ((BOUND(?thisPositionOn18) && BOUND(?thisPositionOn19))) .
BIND(URI(CONCAT(STR(?this), '#MF_04071a15')) AS ?annotation15) .
BIND(?this AS ?pfs14) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch196 faldo:location ?templateMotifSequenceMatchRegionP03468197 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP03468199 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP03468MF_04071192 .
?templateMotifSequenceMatchRegionP03468197 faldo:begin ?templateMotifSequenceMatchBeginP03468198 .
?templateMotifSequenceMatchBeginP03468198 faldo:position ?templateMotifSequenceMatchBeginPositionP03468193 ;
faldo:reference isoform:P03468-1 .
?templateMotifSequenceProfileAlignmentOperationP03468199 edam:has_input signature:MF_04071 ;
rdf:type edam:operation_0300 .
?targetMotifMatch200 faldo:location ?targetMotifMatchRegionMatch201 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04071203 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP03468MF_04071194 .
?targetMotifMatchRegionMatch201 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04071202 .
?targetMotifMatchRegionMatchBeginMF_04071202 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04071195 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04071203 edam:has_input signature:MF_04071 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03468MF_04071192, 1, (STRLEN(?templateMotifCigarP03468MF_04071192) - STRLEN(REPLACE(?templateMotifCigarP03468MF_04071192, CONCAT('^(?:-*[^-]){', STR(((36 - ?templateMotifSequenceMatchBeginPositionP03468193) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1204) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03468MF_04071194, 1, (STRLEN(?targetMotifMatchCigarP03468MF_04071194) - STRLEN(REPLACE(?targetMotifMatchCigarP03468MF_04071194, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1204), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03468MF_04071194, 1, (STRLEN(?targetMotifMatchCigarP03468MF_04071194) - STRLEN(REPLACE(?targetMotifMatchCigarP03468MF_04071194, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1204), '}'), '')))), '[^-]', ''))) AS ?step2205) .
BIND(((?step2205 + ?targetMotifMatchRegionMatchBeginPositionMF_04071195) - 1) AS ?thisPositionOn24) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03468MF_04071192, 1, (STRLEN(?templateMotifCigarP03468MF_04071192) - STRLEN(REPLACE(?templateMotifCigarP03468MF_04071192, CONCAT('^(?:-*[^-]){', STR(((75 - ?templateMotifSequenceMatchBeginPositionP03468193) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1206) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03468MF_04071194, 1, (STRLEN(?targetMotifMatchCigarP03468MF_04071194) - STRLEN(REPLACE(?targetMotifMatchCigarP03468MF_04071194, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1206), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03468MF_04071194, 1, (STRLEN(?targetMotifMatchCigarP03468MF_04071194) - STRLEN(REPLACE(?targetMotifMatchCigarP03468MF_04071194, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1206), '}'), '')))), '[^-]', ''))) AS ?step2207) .
BIND(((?step2207 + ?targetMotifMatchRegionMatchBeginPositionMF_04071195) - 1) AS ?thisPositionOn25) .
BIND(?this AS ?pfs1t208) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb22) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse23) .
FILTER ((BOUND(?thisPositionOn24) && BOUND(?thisPositionOn25))) .
BIND(URI(CONCAT(STR(?this), '#MF_04071a21')) AS ?annotation21) .
BIND(?this AS ?pfs20) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch213 faldo:location ?templateMotifSequenceMatchRegionP03468214 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP03468216 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP03468MF_04071209 .
?templateMotifSequenceMatchRegionP03468214 faldo:begin ?templateMotifSequenceMatchBeginP03468215 .
?templateMotifSequenceMatchBeginP03468215 faldo:position ?templateMotifSequenceMatchBeginPositionP03468210 ;
faldo:reference isoform:P03468-1 .
?templateMotifSequenceProfileAlignmentOperationP03468216 edam:has_input signature:MF_04071 ;
rdf:type edam:operation_0300 .
?targetMotifMatch217 faldo:location ?targetMotifMatchRegionMatch218 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04071220 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP03468MF_04071211 .
?targetMotifMatchRegionMatch218 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04071219 .
?targetMotifMatchRegionMatchBeginMF_04071219 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04071212 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04071220 edam:has_input signature:MF_04071 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03468MF_04071209, 1, (STRLEN(?templateMotifCigarP03468MF_04071209) - STRLEN(REPLACE(?templateMotifCigarP03468MF_04071209, CONCAT('^(?:-*[^-]){', STR(((76 - ?templateMotifSequenceMatchBeginPositionP03468210) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1221) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03468MF_04071211, 1, (STRLEN(?targetMotifMatchCigarP03468MF_04071211) - STRLEN(REPLACE(?targetMotifMatchCigarP03468MF_04071211, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1221), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03468MF_04071211, 1, (STRLEN(?targetMotifMatchCigarP03468MF_04071211) - STRLEN(REPLACE(?targetMotifMatchCigarP03468MF_04071211, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1221), '}'), '')))), '[^-]', ''))) AS ?step2222) .
BIND(((?step2222 + ?targetMotifMatchRegionMatchBeginPositionMF_04071212) - 1) AS ?thisPositionOn30) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn31) .
BIND(?this AS ?pfs1t223) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb28) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse29) .
FILTER ((BOUND(?thisPositionOn30) && BOUND(?thisPositionOn31))) .
BIND(URI(CONCAT(STR(?this), '#MF_04071a27')) AS ?annotation27) .
BIND(?this AS ?pfs26) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch228 faldo:location ?templateMotifSequenceMatchRegionP03468229 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP03468231 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP03468MF_04071224 .
?templateMotifSequenceMatchRegionP03468229 faldo:begin ?templateMotifSequenceMatchBeginP03468230 .
?templateMotifSequenceMatchBeginP03468230 faldo:position ?templateMotifSequenceMatchBeginPositionP03468225 ;
faldo:reference isoform:P03468-1 .
?templateMotifSequenceProfileAlignmentOperationP03468231 edam:has_input signature:MF_04071 ;
rdf:type edam:operation_0300 .
?targetMotifMatch232 faldo:location ?targetMotifMatchRegionMatch233 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04071235 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP03468MF_04071226 .
?targetMotifMatchRegionMatch233 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04071234 .
?targetMotifMatchRegionMatchBeginMF_04071234 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04071227 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04071235 edam:has_input signature:MF_04071 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03468MF_04071224, 1, (STRLEN(?templateMotifCigarP03468MF_04071224) - STRLEN(REPLACE(?templateMotifCigarP03468MF_04071224, CONCAT('^(?:-*[^-]){', STR(((262 - ?templateMotifSequenceMatchBeginPositionP03468225) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1236) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03468MF_04071226, 1, (STRLEN(?targetMotifMatchCigarP03468MF_04071226) - STRLEN(REPLACE(?targetMotifMatchCigarP03468MF_04071226, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1236), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03468MF_04071226, 1, (STRLEN(?targetMotifMatchCigarP03468MF_04071226) - STRLEN(REPLACE(?targetMotifMatchCigarP03468MF_04071226, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1236), '}'), '')))), '[^-]', ''))) AS ?step2237) .
BIND(((?step2237 + ?targetMotifMatchRegionMatchBeginPositionMF_04071227) - 1) AS ?thisPositionOn38) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03468MF_04071224, 1, (STRLEN(?templateMotifCigarP03468MF_04071224) - STRLEN(REPLACE(?templateMotifCigarP03468MF_04071224, CONCAT('^(?:-*[^-]){', STR(((263 - ?templateMotifSequenceMatchBeginPositionP03468225) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1238) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03468MF_04071226, 1, (STRLEN(?targetMotifMatchCigarP03468MF_04071226) - STRLEN(REPLACE(?targetMotifMatchCigarP03468MF_04071226, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1238), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03468MF_04071226, 1, (STRLEN(?targetMotifMatchCigarP03468MF_04071226) - STRLEN(REPLACE(?targetMotifMatchCigarP03468MF_04071226, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1238), '}'), '')))), '[^-]', ''))) AS ?step2239) .
BIND(((?step2239 + ?targetMotifMatchRegionMatchBeginPositionMF_04071227) - 1) AS ?thisPositionOn39) .
BIND(?this AS ?pfs1t240) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfsb34) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfse35) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn38, (?thisPositionOn39 - ?thisPositionOn38)) = 'EE')) .
BIND(URI(CONCAT(STR(?this), '#MF_04071a33')) AS ?annotation33) .
BIND(?this AS ?pfs32) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch245 faldo:location ?templateMotifSequenceMatchRegionP03468246 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP03468248 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP03468MF_04071241 .
?templateMotifSequenceMatchRegionP03468246 faldo:begin ?templateMotifSequenceMatchBeginP03468247 .
?templateMotifSequenceMatchBeginP03468247 faldo:position ?templateMotifSequenceMatchBeginPositionP03468242 ;
faldo:reference isoform:P03468-1 .
?templateMotifSequenceProfileAlignmentOperationP03468248 edam:has_input signature:MF_04071 ;
rdf:type edam:operation_0300 .
?targetMotifMatch249 faldo:location ?targetMotifMatchRegionMatch250 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04071252 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP03468MF_04071243 .
?targetMotifMatchRegionMatch250 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04071251 .
?targetMotifMatchRegionMatchBeginMF_04071251 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04071244 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04071252 edam:has_input signature:MF_04071 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03468MF_04071241, 1, (STRLEN(?templateMotifCigarP03468MF_04071241) - STRLEN(REPLACE(?templateMotifCigarP03468MF_04071241, CONCAT('^(?:-*[^-]){', STR(((136 - ?templateMotifSequenceMatchBeginPositionP03468242) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1253) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03468MF_04071243, 1, (STRLEN(?targetMotifMatchCigarP03468MF_04071243) - STRLEN(REPLACE(?targetMotifMatchCigarP03468MF_04071243, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1253), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03468MF_04071243, 1, (STRLEN(?targetMotifMatchCigarP03468MF_04071243) - STRLEN(REPLACE(?targetMotifMatchCigarP03468MF_04071243, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1253), '}'), '')))), '[^-]', ''))) AS ?step2254) .
BIND(((?step2254 + ?targetMotifMatchRegionMatchBeginPositionMF_04071244) - 1) AS ?thisPositionOn44) .
BIND(?thisPositionOn44 AS ?thisPositionOn45) .
BIND(?this AS ?pfs1t255) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfsb42) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfse43) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn44, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_04071a41')) AS ?annotation41) .
BIND(?this AS ?pfs40) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch260 faldo:location ?templateMotifSequenceMatchRegionP03468261 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP03468263 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP03468MF_04071256 .
?templateMotifSequenceMatchRegionP03468261 faldo:begin ?templateMotifSequenceMatchBeginP03468262 .
?templateMotifSequenceMatchBeginP03468262 faldo:position ?templateMotifSequenceMatchBeginPositionP03468257 ;
faldo:reference isoform:P03468-1 .
?templateMotifSequenceProfileAlignmentOperationP03468263 edam:has_input signature:MF_04071 ;
rdf:type edam:operation_0300 .
?targetMotifMatch264 faldo:location ?targetMotifMatchRegionMatch265 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04071267 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP03468MF_04071258 .
?targetMotifMatchRegionMatch265 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04071266 .
?targetMotifMatchRegionMatchBeginMF_04071266 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04071259 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04071267 edam:has_input signature:MF_04071 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03468MF_04071256, 1, (STRLEN(?templateMotifCigarP03468MF_04071256) - STRLEN(REPLACE(?templateMotifCigarP03468MF_04071256, CONCAT('^(?:-*[^-]){', STR(((387 - ?templateMotifSequenceMatchBeginPositionP03468257) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1268) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03468MF_04071258, 1, (STRLEN(?targetMotifMatchCigarP03468MF_04071258) - STRLEN(REPLACE(?targetMotifMatchCigarP03468MF_04071258, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1268), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03468MF_04071258, 1, (STRLEN(?targetMotifMatchCigarP03468MF_04071258) - STRLEN(REPLACE(?targetMotifMatchCigarP03468MF_04071258, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1268), '}'), '')))), '[^-]', ''))) AS ?step2269) .
BIND(((?step2269 + ?targetMotifMatchRegionMatchBeginPositionMF_04071259) - 1) AS ?thisPositionOn50) .
BIND(?thisPositionOn50 AS ?thisPositionOn51) .
BIND(?this AS ?pfs1t270) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfsb48) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfse49) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn50, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_04071a47')) AS ?annotation47) .
BIND(?this AS ?pfs46) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch275 faldo:location ?templateMotifSequenceMatchRegionP03468276 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP03468278 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP03468MF_04071271 .
?templateMotifSequenceMatchRegionP03468276 faldo:begin ?templateMotifSequenceMatchBeginP03468277 .
?templateMotifSequenceMatchBeginP03468277 faldo:position ?templateMotifSequenceMatchBeginPositionP03468272 ;
faldo:reference isoform:P03468-1 .
?templateMotifSequenceProfileAlignmentOperationP03468278 edam:has_input signature:MF_04071 ;
rdf:type edam:operation_0300 .
?targetMotifMatch279 faldo:location ?targetMotifMatchRegionMatch280 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04071282 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP03468MF_04071273 .
?targetMotifMatchRegionMatch280 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04071281 .
?targetMotifMatchRegionMatchBeginMF_04071281 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04071274 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04071282 edam:has_input signature:MF_04071 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03468MF_04071271, 1, (STRLEN(?templateMotifCigarP03468MF_04071271) - STRLEN(REPLACE(?templateMotifCigarP03468MF_04071271, CONCAT('^(?:-*[^-]){', STR(((279 - ?templateMotifSequenceMatchBeginPositionP03468272) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1283) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03468MF_04071273, 1, (STRLEN(?targetMotifMatchCigarP03468MF_04071273) - STRLEN(REPLACE(?targetMotifMatchCigarP03468MF_04071273, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1283), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03468MF_04071273, 1, (STRLEN(?targetMotifMatchCigarP03468MF_04071273) - STRLEN(REPLACE(?targetMotifMatchCigarP03468MF_04071273, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1283), '}'), '')))), '[^-]', ''))) AS ?step2284) .
BIND(((?step2284 + ?targetMotifMatchRegionMatchBeginPositionMF_04071274) - 1) AS ?thisPositionOn57) .
BIND(?thisPositionOn57 AS ?thisPositionOn58) .
BIND(?this AS ?pfs1t285) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfsb54) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfse55) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn57, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_04071a53')) AS ?annotation53) .
BIND(?this AS ?pfs52) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch290 faldo:location ?templateMotifSequenceMatchRegionP03468291 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP03468293 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP03468MF_04071286 .
?templateMotifSequenceMatchRegionP03468291 faldo:begin ?templateMotifSequenceMatchBeginP03468292 .
?templateMotifSequenceMatchBeginP03468292 faldo:position ?templateMotifSequenceMatchBeginPositionP03468287 ;
faldo:reference isoform:P03468-1 .
?templateMotifSequenceProfileAlignmentOperationP03468293 edam:has_input signature:MF_04071 ;
rdf:type edam:operation_0300 .
?targetMotifMatch294 faldo:location ?targetMotifMatchRegionMatch295 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04071297 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP03468MF_04071288 .
?targetMotifMatchRegionMatch295 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04071296 .
?targetMotifMatchRegionMatchBeginMF_04071296 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04071289 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04071297 edam:has_input signature:MF_04071 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03468MF_04071286, 1, (STRLEN(?templateMotifCigarP03468MF_04071286) - STRLEN(REPLACE(?templateMotifCigarP03468MF_04071286, CONCAT('^(?:-*[^-]){', STR(((283 - ?templateMotifSequenceMatchBeginPositionP03468287) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1298) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03468MF_04071288, 1, (STRLEN(?targetMotifMatchCigarP03468MF_04071288) - STRLEN(REPLACE(?targetMotifMatchCigarP03468MF_04071288, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1298), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03468MF_04071288, 1, (STRLEN(?targetMotifMatchCigarP03468MF_04071288) - STRLEN(REPLACE(?targetMotifMatchCigarP03468MF_04071288, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1298), '}'), '')))), '[^-]', ''))) AS ?step2299) .
BIND(((?step2299 + ?targetMotifMatchRegionMatchBeginPositionMF_04071289) - 1) AS ?thisPositionOn64) .
BIND(?thisPositionOn64 AS ?thisPositionOn65) .
BIND(?this AS ?pfs1t300) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfsb61) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn65))) AS ?pfse62) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn64, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_04071a60')) AS ?annotation60) .
BIND(?this AS ?pfs59) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch305 faldo:location ?templateMotifSequenceMatchRegionP03468306 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP03468308 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP03468MF_04071301 .
?templateMotifSequenceMatchRegionP03468306 faldo:begin ?templateMotifSequenceMatchBeginP03468307 .
?templateMotifSequenceMatchBeginP03468307 faldo:position ?templateMotifSequenceMatchBeginPositionP03468302 ;
faldo:reference isoform:P03468-1 .
?templateMotifSequenceProfileAlignmentOperationP03468308 edam:has_input signature:MF_04071 ;
rdf:type edam:operation_0300 .
?targetMotifMatch309 faldo:location ?targetMotifMatchRegionMatch310 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04071312 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP03468MF_04071303 .
?targetMotifMatchRegionMatch310 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04071311 .
?targetMotifMatchRegionMatchBeginMF_04071311 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04071304 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04071312 edam:has_input signature:MF_04071 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03468MF_04071301, 1, (STRLEN(?templateMotifCigarP03468MF_04071301) - STRLEN(REPLACE(?templateMotifCigarP03468MF_04071301, CONCAT('^(?:-*[^-]){', STR(((309 - ?templateMotifSequenceMatchBeginPositionP03468302) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1313) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03468MF_04071303, 1, (STRLEN(?targetMotifMatchCigarP03468MF_04071303) - STRLEN(REPLACE(?targetMotifMatchCigarP03468MF_04071303, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1313), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03468MF_04071303, 1, (STRLEN(?targetMotifMatchCigarP03468MF_04071303) - STRLEN(REPLACE(?targetMotifMatchCigarP03468MF_04071303, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1313), '}'), '')))), '[^-]', ''))) AS ?step2314) .
BIND(((?step2314 + ?targetMotifMatchRegionMatchBeginPositionMF_04071304) - 1) AS ?thisPositionOn71) .
BIND(?thisPositionOn71 AS ?thisPositionOn72) .
BIND(?this AS ?pfs1t315) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn71))) AS ?pfsb68) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn72))) AS ?pfse69) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn71, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_04071a67')) AS ?annotation67) .
BIND(?this AS ?pfs66) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch320 faldo:location ?templateMotifSequenceMatchRegionP03468321 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP03468323 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP03468MF_04071316 .
?templateMotifSequenceMatchRegionP03468321 faldo:begin ?templateMotifSequenceMatchBeginP03468322 .
?templateMotifSequenceMatchBeginP03468322 faldo:position ?templateMotifSequenceMatchBeginPositionP03468317 ;
faldo:reference isoform:P03468-1 .
?templateMotifSequenceProfileAlignmentOperationP03468323 edam:has_input signature:MF_04071 ;
rdf:type edam:operation_0300 .
?targetMotifMatch324 faldo:location ?targetMotifMatchRegionMatch325 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04071327 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP03468MF_04071318 .
?targetMotifMatchRegionMatch325 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04071326 .
?targetMotifMatchRegionMatchBeginMF_04071326 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04071319 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04071327 edam:has_input signature:MF_04071 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03468MF_04071316, 1, (STRLEN(?templateMotifCigarP03468MF_04071316) - STRLEN(REPLACE(?templateMotifCigarP03468MF_04071316, CONCAT('^(?:-*[^-]){', STR(((329 - ?templateMotifSequenceMatchBeginPositionP03468317) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1328) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03468MF_04071318, 1, (STRLEN(?targetMotifMatchCigarP03468MF_04071318) - STRLEN(REPLACE(?targetMotifMatchCigarP03468MF_04071318, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1328), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03468MF_04071318, 1, (STRLEN(?targetMotifMatchCigarP03468MF_04071318) - STRLEN(REPLACE(?targetMotifMatchCigarP03468MF_04071318, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1328), '}'), '')))), '[^-]', ''))) AS ?step2329) .
BIND(((?step2329 + ?targetMotifMatchRegionMatchBeginPositionMF_04071319) - 1) AS ?thisPositionOn78) .
BIND(?thisPositionOn78 AS ?thisPositionOn79) .
BIND(?this AS ?pfs1t330) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn78))) AS ?pfsb75) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn79))) AS ?pfse76) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn78, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_04071a74')) AS ?annotation74) .
BIND(?this AS ?pfs73) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch335 faldo:location ?templateMotifSequenceMatchRegionP03468336 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP03468338 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP03468MF_04071331 .
?templateMotifSequenceMatchRegionP03468336 faldo:begin ?templateMotifSequenceMatchBeginP03468337 .
?templateMotifSequenceMatchBeginP03468337 faldo:position ?templateMotifSequenceMatchBeginPositionP03468332 ;
faldo:reference isoform:P03468-1 .
?templateMotifSequenceProfileAlignmentOperationP03468338 edam:has_input signature:MF_04071 ;
rdf:type edam:operation_0300 .
?targetMotifMatch339 faldo:location ?targetMotifMatchRegionMatch340 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04071342 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP03468MF_04071333 .
?targetMotifMatchRegionMatch340 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04071341 .
?targetMotifMatchRegionMatchBeginMF_04071341 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04071334 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04071342 edam:has_input signature:MF_04071 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03468MF_04071331, 1, (STRLEN(?templateMotifCigarP03468MF_04071331) - STRLEN(REPLACE(?templateMotifCigarP03468MF_04071331, CONCAT('^(?:-*[^-]){', STR(((103 - ?templateMotifSequenceMatchBeginPositionP03468332) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1343) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03468MF_04071333, 1, (STRLEN(?targetMotifMatchCigarP03468MF_04071333) - STRLEN(REPLACE(?targetMotifMatchCigarP03468MF_04071333, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1343), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03468MF_04071333, 1, (STRLEN(?targetMotifMatchCigarP03468MF_04071333) - STRLEN(REPLACE(?targetMotifMatchCigarP03468MF_04071333, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1343), '}'), '')))), '[^-]', ''))) AS ?step2344) .
BIND(((?step2344 + ?targetMotifMatchRegionMatchBeginPositionMF_04071334) - 1) AS ?thisPositionOn86) .
BIND(?thisPositionOn86 AS ?thisPositionOn87) .
BIND(?this AS ?pfs1t345) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn86))) AS ?pfsb82) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn87))) AS ?pfse83) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn86, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_04071a81')) AS ?annotation81) .
BIND(?this AS ?pfs80) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch350 faldo:location ?templateMotifSequenceMatchRegionP03468351 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP03468353 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP03468MF_04071346 .
?templateMotifSequenceMatchRegionP03468351 faldo:begin ?templateMotifSequenceMatchBeginP03468352 .
?templateMotifSequenceMatchBeginP03468352 faldo:position ?templateMotifSequenceMatchBeginPositionP03468347 ;
faldo:reference isoform:P03468-1 .
?templateMotifSequenceProfileAlignmentOperationP03468353 edam:has_input signature:MF_04071 ;
rdf:type edam:operation_0300 .
?targetMotifMatch354 faldo:location ?targetMotifMatchRegionMatch355 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04071357 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP03468MF_04071348 .
?targetMotifMatchRegionMatch355 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04071356 .
?targetMotifMatchRegionMatchBeginMF_04071356 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04071349 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04071357 edam:has_input signature:MF_04071 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03468MF_04071346, 1, (STRLEN(?templateMotifCigarP03468MF_04071346) - STRLEN(REPLACE(?templateMotifCigarP03468MF_04071346, CONCAT('^(?:-*[^-]){', STR(((137 - ?templateMotifSequenceMatchBeginPositionP03468347) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1358) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03468MF_04071348, 1, (STRLEN(?targetMotifMatchCigarP03468MF_04071348) - STRLEN(REPLACE(?targetMotifMatchCigarP03468MF_04071348, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1358), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03468MF_04071348, 1, (STRLEN(?targetMotifMatchCigarP03468MF_04071348) - STRLEN(REPLACE(?targetMotifMatchCigarP03468MF_04071348, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1358), '}'), '')))), '[^-]', ''))) AS ?step2359) .
BIND(((?step2359 + ?targetMotifMatchRegionMatchBeginPositionMF_04071349) - 1) AS ?thisPositionOn94) .
BIND(?thisPositionOn94 AS ?thisPositionOn95) .
BIND(?this AS ?pfs1t360) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn94))) AS ?pfsb90) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn95))) AS ?pfse91) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn94, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_04071a89')) AS ?annotation89) .
BIND(?this AS ?pfs88) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch365 faldo:location ?templateMotifSequenceMatchRegionP03468366 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP03468368 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP03468MF_04071361 .
?templateMotifSequenceMatchRegionP03468366 faldo:begin ?templateMotifSequenceMatchBeginP03468367 .
?templateMotifSequenceMatchBeginP03468367 faldo:position ?templateMotifSequenceMatchBeginPositionP03468362 ;
faldo:reference isoform:P03468-1 .
?templateMotifSequenceProfileAlignmentOperationP03468368 edam:has_input signature:MF_04071 ;
rdf:type edam:operation_0300 .
?targetMotifMatch369 faldo:location ?targetMotifMatchRegionMatch370 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04071372 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP03468MF_04071363 .
?targetMotifMatchRegionMatch370 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04071371 .
?targetMotifMatchRegionMatchBeginMF_04071371 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04071364 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04071372 edam:has_input signature:MF_04071 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03468MF_04071361, 1, (STRLEN(?templateMotifCigarP03468MF_04071361) - STRLEN(REPLACE(?templateMotifCigarP03468MF_04071361, CONCAT('^(?:-*[^-]){', STR(((278 - ?templateMotifSequenceMatchBeginPositionP03468362) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1373) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03468MF_04071363, 1, (STRLEN(?targetMotifMatchCigarP03468MF_04071363) - STRLEN(REPLACE(?targetMotifMatchCigarP03468MF_04071363, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1373), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03468MF_04071363, 1, (STRLEN(?targetMotifMatchCigarP03468MF_04071363) - STRLEN(REPLACE(?targetMotifMatchCigarP03468MF_04071363, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1373), '}'), '')))), '[^-]', ''))) AS ?step2374) .
BIND(((?step2374 + ?targetMotifMatchRegionMatchBeginPositionMF_04071364) - 1) AS ?thisPositionOn102) .
BIND(?thisPositionOn102 AS ?thisPositionOn103) .
BIND(?this AS ?pfs1t375) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn102))) AS ?pfsb98) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn103))) AS ?pfse99) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn102, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_04071a97')) AS ?annotation97) .
BIND(?this AS ?pfs96) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch380 faldo:location ?templateMotifSequenceMatchRegionP03468381 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP03468383 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP03468MF_04071376 .
?templateMotifSequenceMatchRegionP03468381 faldo:begin ?templateMotifSequenceMatchBeginP03468382 .
?templateMotifSequenceMatchBeginP03468382 faldo:position ?templateMotifSequenceMatchBeginPositionP03468377 ;
faldo:reference isoform:P03468-1 .
?templateMotifSequenceProfileAlignmentOperationP03468383 edam:has_input signature:MF_04071 ;
rdf:type edam:operation_0300 .
?targetMotifMatch384 faldo:location ?targetMotifMatchRegionMatch385 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04071387 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP03468MF_04071378 .
?targetMotifMatchRegionMatch385 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04071386 .
?targetMotifMatchRegionMatchBeginMF_04071386 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04071379 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04071387 edam:has_input signature:MF_04071 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03468MF_04071376, 1, (STRLEN(?templateMotifCigarP03468MF_04071376) - STRLEN(REPLACE(?templateMotifCigarP03468MF_04071376, CONCAT('^(?:-*[^-]){', STR(((353 - ?templateMotifSequenceMatchBeginPositionP03468377) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1388) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03468MF_04071378, 1, (STRLEN(?targetMotifMatchCigarP03468MF_04071378) - STRLEN(REPLACE(?targetMotifMatchCigarP03468MF_04071378, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1388), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03468MF_04071378, 1, (STRLEN(?targetMotifMatchCigarP03468MF_04071378) - STRLEN(REPLACE(?targetMotifMatchCigarP03468MF_04071378, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1388), '}'), '')))), '[^-]', ''))) AS ?step2389) .
BIND(((?step2389 + ?targetMotifMatchRegionMatchBeginPositionMF_04071379) - 1) AS ?thisPositionOn110) .
BIND(?thisPositionOn110 AS ?thisPositionOn111) .
BIND(?this AS ?pfs1t390) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn110))) AS ?pfsb106) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn111))) AS ?pfse107) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn110, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_04071a105')) AS ?annotation105) .
BIND(?this AS ?pfs104) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch395 faldo:location ?templateMotifSequenceMatchRegionP03468396 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP03468398 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP03468MF_04071391 .
?templateMotifSequenceMatchRegionP03468396 faldo:begin ?templateMotifSequenceMatchBeginP03468397 .
?templateMotifSequenceMatchBeginP03468397 faldo:position ?templateMotifSequenceMatchBeginPositionP03468392 ;
faldo:reference isoform:P03468-1 .
?templateMotifSequenceProfileAlignmentOperationP03468398 edam:has_input signature:MF_04071 ;
rdf:type edam:operation_0300 .
?targetMotifMatch399 faldo:location ?targetMotifMatchRegionMatch400 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04071402 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP03468MF_04071393 .
?targetMotifMatchRegionMatch400 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04071401 .
?targetMotifMatchRegionMatchBeginMF_04071401 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04071394 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04071402 edam:has_input signature:MF_04071 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03468MF_04071391, 1, (STRLEN(?templateMotifCigarP03468MF_04071391) - STRLEN(REPLACE(?templateMotifCigarP03468MF_04071391, CONCAT('^(?:-*[^-]){', STR(((77 - ?templateMotifSequenceMatchBeginPositionP03468392) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1403) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03468MF_04071393, 1, (STRLEN(?targetMotifMatchCigarP03468MF_04071393) - STRLEN(REPLACE(?targetMotifMatchCigarP03468MF_04071393, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1403), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03468MF_04071393, 1, (STRLEN(?targetMotifMatchCigarP03468MF_04071393) - STRLEN(REPLACE(?targetMotifMatchCigarP03468MF_04071393, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1403), '}'), '')))), '[^-]', ''))) AS ?step2404) .
BIND(((?step2404 + ?targetMotifMatchRegionMatchBeginPositionMF_04071394) - 1) AS ?thisPositionOn116) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03468MF_04071391, 1, (STRLEN(?templateMotifCigarP03468MF_04071391) - STRLEN(REPLACE(?templateMotifCigarP03468MF_04071391, CONCAT('^(?:-*[^-]){', STR(((402 - ?templateMotifSequenceMatchBeginPositionP03468392) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1405) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03468MF_04071393, 1, (STRLEN(?targetMotifMatchCigarP03468MF_04071393) - STRLEN(REPLACE(?targetMotifMatchCigarP03468MF_04071393, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1405), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03468MF_04071393, 1, (STRLEN(?targetMotifMatchCigarP03468MF_04071393) - STRLEN(REPLACE(?targetMotifMatchCigarP03468MF_04071393, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1405), '}'), '')))), '[^-]', ''))) AS ?step2406) .
BIND(((?step2406 + ?targetMotifMatchRegionMatchBeginPositionMF_04071394) - 1) AS ?thisPositionOn117) .
BIND(?this AS ?pfs1t407) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn116))) AS ?pfsb114) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn117))) AS ?pfse115) .
FILTER (REGEX('C[ARNDCQEGHILKMFPSTWYVBZJUOX]*C', SUBSTR(?thisSequenceValue, ?thisPositionOn116, (?thisPositionOn117 - ?thisPositionOn116)))) .
BIND(URI(CONCAT(STR(?this), '#MF_04071a113')) AS ?annotation113) .
BIND(?this AS ?pfs112) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch412 faldo:location ?templateMotifSequenceMatchRegionP03468413 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP03468415 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP03468MF_04071408 .
?templateMotifSequenceMatchRegionP03468413 faldo:begin ?templateMotifSequenceMatchBeginP03468414 .
?templateMotifSequenceMatchBeginP03468414 faldo:position ?templateMotifSequenceMatchBeginPositionP03468409 ;
faldo:reference isoform:P03468-1 .
?templateMotifSequenceProfileAlignmentOperationP03468415 edam:has_input signature:MF_04071 ;
rdf:type edam:operation_0300 .
?targetMotifMatch416 faldo:location ?targetMotifMatchRegionMatch417 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04071419 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP03468MF_04071410 .
?targetMotifMatchRegionMatch417 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04071418 .
?targetMotifMatchRegionMatchBeginMF_04071418 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04071411 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04071419 edam:has_input signature:MF_04071 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03468MF_04071408, 1, (STRLEN(?templateMotifCigarP03468MF_04071408) - STRLEN(REPLACE(?templateMotifCigarP03468MF_04071408, CONCAT('^(?:-*[^-]){', STR(((109 - ?templateMotifSequenceMatchBeginPositionP03468409) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1420) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03468MF_04071410, 1, (STRLEN(?targetMotifMatchCigarP03468MF_04071410) - STRLEN(REPLACE(?targetMotifMatchCigarP03468MF_04071410, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1420), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03468MF_04071410, 1, (STRLEN(?targetMotifMatchCigarP03468MF_04071410) - STRLEN(REPLACE(?targetMotifMatchCigarP03468MF_04071410, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1420), '}'), '')))), '[^-]', ''))) AS ?step2421) .
BIND(((?step2421 + ?targetMotifMatchRegionMatchBeginPositionMF_04071411) - 1) AS ?thisPositionOn122) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03468MF_04071408, 1, (STRLEN(?templateMotifCigarP03468MF_04071408) - STRLEN(REPLACE(?templateMotifCigarP03468MF_04071408, CONCAT('^(?:-*[^-]){', STR(((114 - ?templateMotifSequenceMatchBeginPositionP03468409) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1422) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03468MF_04071410, 1, (STRLEN(?targetMotifMatchCigarP03468MF_04071410) - STRLEN(REPLACE(?targetMotifMatchCigarP03468MF_04071410, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1422), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03468MF_04071410, 1, (STRLEN(?targetMotifMatchCigarP03468MF_04071410) - STRLEN(REPLACE(?targetMotifMatchCigarP03468MF_04071410, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1422), '}'), '')))), '[^-]', ''))) AS ?step2423) .
BIND(((?step2423 + ?targetMotifMatchRegionMatchBeginPositionMF_04071411) - 1) AS ?thisPositionOn123) .
BIND(?this AS ?pfs1t424) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn122))) AS ?pfsb120) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn123))) AS ?pfse121) .
FILTER (REGEX('C[ARNDCQEGHILKMFPSTWYVBZJUOX]*C', SUBSTR(?thisSequenceValue, ?thisPositionOn122, (?thisPositionOn123 - ?thisPositionOn122)))) .
BIND(URI(CONCAT(STR(?this), '#MF_04071a119')) AS ?annotation119) .
BIND(?this AS ?pfs118) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch429 faldo:location ?templateMotifSequenceMatchRegionP03468430 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP03468432 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP03468MF_04071425 .
?templateMotifSequenceMatchRegionP03468430 faldo:begin ?templateMotifSequenceMatchBeginP03468431 .
?templateMotifSequenceMatchBeginP03468431 faldo:position ?templateMotifSequenceMatchBeginPositionP03468426 ;
faldo:reference isoform:P03468-1 .
?templateMotifSequenceProfileAlignmentOperationP03468432 edam:has_input signature:MF_04071 ;
rdf:type edam:operation_0300 .
?targetMotifMatch433 faldo:location ?targetMotifMatchRegionMatch434 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04071436 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP03468MF_04071427 .
?targetMotifMatchRegionMatch434 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04071435 .
?targetMotifMatchRegionMatchBeginMF_04071435 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04071428 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04071436 edam:has_input signature:MF_04071 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03468MF_04071425, 1, (STRLEN(?templateMotifCigarP03468MF_04071425) - STRLEN(REPLACE(?templateMotifCigarP03468MF_04071425, CONCAT('^(?:-*[^-]){', STR(((169 - ?templateMotifSequenceMatchBeginPositionP03468426) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1437) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03468MF_04071427, 1, (STRLEN(?targetMotifMatchCigarP03468MF_04071427) - STRLEN(REPLACE(?targetMotifMatchCigarP03468MF_04071427, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1437), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03468MF_04071427, 1, (STRLEN(?targetMotifMatchCigarP03468MF_04071427) - STRLEN(REPLACE(?targetMotifMatchCigarP03468MF_04071427, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1437), '}'), '')))), '[^-]', ''))) AS ?step2438) .
BIND(((?step2438 + ?targetMotifMatchRegionMatchBeginPositionMF_04071428) - 1) AS ?thisPositionOn128) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03468MF_04071425, 1, (STRLEN(?templateMotifCigarP03468MF_04071425) - STRLEN(REPLACE(?templateMotifCigarP03468MF_04071425, CONCAT('^(?:-*[^-]){', STR(((216 - ?templateMotifSequenceMatchBeginPositionP03468426) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1439) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03468MF_04071427, 1, (STRLEN(?targetMotifMatchCigarP03468MF_04071427) - STRLEN(REPLACE(?targetMotifMatchCigarP03468MF_04071427, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1439), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03468MF_04071427, 1, (STRLEN(?targetMotifMatchCigarP03468MF_04071427) - STRLEN(REPLACE(?targetMotifMatchCigarP03468MF_04071427, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1439), '}'), '')))), '[^-]', ''))) AS ?step2440) .
BIND(((?step2440 + ?targetMotifMatchRegionMatchBeginPositionMF_04071428) - 1) AS ?thisPositionOn129) .
BIND(?this AS ?pfs1t441) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn128))) AS ?pfsb126) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn129))) AS ?pfse127) .
FILTER (REGEX('C[ARNDCQEGHILKMFPSTWYVBZJUOX]*C', SUBSTR(?thisSequenceValue, ?thisPositionOn128, (?thisPositionOn129 - ?thisPositionOn128)))) .
BIND(URI(CONCAT(STR(?this), '#MF_04071a125')) AS ?annotation125) .
BIND(?this AS ?pfs124) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch446 faldo:location ?templateMotifSequenceMatchRegionP03468447 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP03468449 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP03468MF_04071442 .
?templateMotifSequenceMatchRegionP03468447 faldo:begin ?templateMotifSequenceMatchBeginP03468448 .
?templateMotifSequenceMatchBeginP03468448 faldo:position ?templateMotifSequenceMatchBeginPositionP03468443 ;
faldo:reference isoform:P03468-1 .
?templateMotifSequenceProfileAlignmentOperationP03468449 edam:has_input signature:MF_04071 ;
rdf:type edam:operation_0300 .
?targetMotifMatch450 faldo:location ?targetMotifMatchRegionMatch451 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04071453 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP03468MF_04071444 .
?targetMotifMatchRegionMatch451 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04071452 .
?targetMotifMatchRegionMatchBeginMF_04071452 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04071445 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04071453 edam:has_input signature:MF_04071 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03468MF_04071442, 1, (STRLEN(?templateMotifCigarP03468MF_04071442) - STRLEN(REPLACE(?templateMotifCigarP03468MF_04071442, CONCAT('^(?:-*[^-]){', STR(((218 - ?templateMotifSequenceMatchBeginPositionP03468443) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1454) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03468MF_04071444, 1, (STRLEN(?targetMotifMatchCigarP03468MF_04071444) - STRLEN(REPLACE(?targetMotifMatchCigarP03468MF_04071444, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1454), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03468MF_04071444, 1, (STRLEN(?targetMotifMatchCigarP03468MF_04071444) - STRLEN(REPLACE(?targetMotifMatchCigarP03468MF_04071444, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1454), '}'), '')))), '[^-]', ''))) AS ?step2455) .
BIND(((?step2455 + ?targetMotifMatchRegionMatchBeginPositionMF_04071445) - 1) AS ?thisPositionOn134) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03468MF_04071442, 1, (STRLEN(?templateMotifCigarP03468MF_04071442) - STRLEN(REPLACE(?templateMotifCigarP03468MF_04071442, CONCAT('^(?:-*[^-]){', STR(((223 - ?templateMotifSequenceMatchBeginPositionP03468443) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1456) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03468MF_04071444, 1, (STRLEN(?targetMotifMatchCigarP03468MF_04071444) - STRLEN(REPLACE(?targetMotifMatchCigarP03468MF_04071444, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1456), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03468MF_04071444, 1, (STRLEN(?targetMotifMatchCigarP03468MF_04071444) - STRLEN(REPLACE(?targetMotifMatchCigarP03468MF_04071444, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1456), '}'), '')))), '[^-]', ''))) AS ?step2457) .
BIND(((?step2457 + ?targetMotifMatchRegionMatchBeginPositionMF_04071445) - 1) AS ?thisPositionOn135) .
BIND(?this AS ?pfs1t458) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn134))) AS ?pfsb132) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn135))) AS ?pfse133) .
FILTER (REGEX('C[ARNDCQEGHILKMFPSTWYVBZJUOX]*C', SUBSTR(?thisSequenceValue, ?thisPositionOn134, (?thisPositionOn135 - ?thisPositionOn134)))) .
BIND(URI(CONCAT(STR(?this), '#MF_04071a131')) AS ?annotation131) .
BIND(?this AS ?pfs130) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch463 faldo:location ?templateMotifSequenceMatchRegionP03468464 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP03468466 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP03468MF_04071459 .
?templateMotifSequenceMatchRegionP03468464 faldo:begin ?templateMotifSequenceMatchBeginP03468465 .
?templateMotifSequenceMatchBeginP03468465 faldo:position ?templateMotifSequenceMatchBeginPositionP03468460 ;
faldo:reference isoform:P03468-1 .
?templateMotifSequenceProfileAlignmentOperationP03468466 edam:has_input signature:MF_04071 ;
rdf:type edam:operation_0300 .
?targetMotifMatch467 faldo:location ?targetMotifMatchRegionMatch468 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04071470 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP03468MF_04071461 .
?targetMotifMatchRegionMatch468 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04071469 .
?targetMotifMatchRegionMatchBeginMF_04071469 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04071462 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04071470 edam:has_input signature:MF_04071 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03468MF_04071459, 1, (STRLEN(?templateMotifCigarP03468MF_04071459) - STRLEN(REPLACE(?templateMotifCigarP03468MF_04071459, CONCAT('^(?:-*[^-]){', STR(((264 - ?templateMotifSequenceMatchBeginPositionP03468460) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1471) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03468MF_04071461, 1, (STRLEN(?targetMotifMatchCigarP03468MF_04071461) - STRLEN(REPLACE(?targetMotifMatchCigarP03468MF_04071461, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1471), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03468MF_04071461, 1, (STRLEN(?targetMotifMatchCigarP03468MF_04071461) - STRLEN(REPLACE(?targetMotifMatchCigarP03468MF_04071461, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1471), '}'), '')))), '[^-]', ''))) AS ?step2472) .
BIND(((?step2472 + ?targetMotifMatchRegionMatchBeginPositionMF_04071462) - 1) AS ?thisPositionOn140) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03468MF_04071459, 1, (STRLEN(?templateMotifCigarP03468MF_04071459) - STRLEN(REPLACE(?templateMotifCigarP03468MF_04071459, CONCAT('^(?:-*[^-]){', STR(((277 - ?templateMotifSequenceMatchBeginPositionP03468460) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1473) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03468MF_04071461, 1, (STRLEN(?targetMotifMatchCigarP03468MF_04071461) - STRLEN(REPLACE(?targetMotifMatchCigarP03468MF_04071461, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1473), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03468MF_04071461, 1, (STRLEN(?targetMotifMatchCigarP03468MF_04071461) - STRLEN(REPLACE(?targetMotifMatchCigarP03468MF_04071461, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1473), '}'), '')))), '[^-]', ''))) AS ?step2474) .
BIND(((?step2474 + ?targetMotifMatchRegionMatchBeginPositionMF_04071462) - 1) AS ?thisPositionOn141) .
BIND(?this AS ?pfs1t475) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn140))) AS ?pfsb138) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn141))) AS ?pfse139) .
FILTER (REGEX('C[ARNDCQEGHILKMFPSTWYVBZJUOX]*C', SUBSTR(?thisSequenceValue, ?thisPositionOn140, (?thisPositionOn141 - ?thisPositionOn140)))) .
BIND(URI(CONCAT(STR(?this), '#MF_04071a137')) AS ?annotation137) .
BIND(?this AS ?pfs136) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch480 faldo:location ?templateMotifSequenceMatchRegionP03468481 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP03468483 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP03468MF_04071476 .
?templateMotifSequenceMatchRegionP03468481 faldo:begin ?templateMotifSequenceMatchBeginP03468482 .
?templateMotifSequenceMatchBeginP03468482 faldo:position ?templateMotifSequenceMatchBeginPositionP03468477 ;
faldo:reference isoform:P03468-1 .
?templateMotifSequenceProfileAlignmentOperationP03468483 edam:has_input signature:MF_04071 ;
rdf:type edam:operation_0300 .
?targetMotifMatch484 faldo:location ?targetMotifMatchRegionMatch485 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04071487 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP03468MF_04071478 .
?targetMotifMatchRegionMatch485 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04071486 .
?targetMotifMatchRegionMatchBeginMF_04071486 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04071479 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04071487 edam:has_input signature:MF_04071 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03468MF_04071476, 1, (STRLEN(?templateMotifCigarP03468MF_04071476) - STRLEN(REPLACE(?templateMotifCigarP03468MF_04071476, CONCAT('^(?:-*[^-]){', STR(((266 - ?templateMotifSequenceMatchBeginPositionP03468477) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1488) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03468MF_04071478, 1, (STRLEN(?targetMotifMatchCigarP03468MF_04071478) - STRLEN(REPLACE(?targetMotifMatchCigarP03468MF_04071478, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1488), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03468MF_04071478, 1, (STRLEN(?targetMotifMatchCigarP03468MF_04071478) - STRLEN(REPLACE(?targetMotifMatchCigarP03468MF_04071478, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1488), '}'), '')))), '[^-]', ''))) AS ?step2489) .
BIND(((?step2489 + ?targetMotifMatchRegionMatchBeginPositionMF_04071479) - 1) AS ?thisPositionOn146) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03468MF_04071476, 1, (STRLEN(?templateMotifCigarP03468MF_04071476) - STRLEN(REPLACE(?templateMotifCigarP03468MF_04071476, CONCAT('^(?:-*[^-]){', STR(((275 - ?templateMotifSequenceMatchBeginPositionP03468477) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1490) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03468MF_04071478, 1, (STRLEN(?targetMotifMatchCigarP03468MF_04071478) - STRLEN(REPLACE(?targetMotifMatchCigarP03468MF_04071478, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1490), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03468MF_04071478, 1, (STRLEN(?targetMotifMatchCigarP03468MF_04071478) - STRLEN(REPLACE(?targetMotifMatchCigarP03468MF_04071478, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1490), '}'), '')))), '[^-]', ''))) AS ?step2491) .
BIND(((?step2491 + ?targetMotifMatchRegionMatchBeginPositionMF_04071479) - 1) AS ?thisPositionOn147) .
BIND(?this AS ?pfs1t492) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn146))) AS ?pfsb144) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn147))) AS ?pfse145) .
FILTER (REGEX('C[ARNDCQEGHILKMFPSTWYVBZJUOX]*C', SUBSTR(?thisSequenceValue, ?thisPositionOn146, (?thisPositionOn147 - ?thisPositionOn146)))) .
BIND(URI(CONCAT(STR(?this), '#MF_04071a143')) AS ?annotation143) .
BIND(?this AS ?pfs142) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch497 faldo:location ?templateMotifSequenceMatchRegionP03468498 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP03468500 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP03468MF_04071493 .
?templateMotifSequenceMatchRegionP03468498 faldo:begin ?templateMotifSequenceMatchBeginP03468499 .
?templateMotifSequenceMatchBeginP03468499 faldo:position ?templateMotifSequenceMatchBeginPositionP03468494 ;
faldo:reference isoform:P03468-1 .
?templateMotifSequenceProfileAlignmentOperationP03468500 edam:has_input signature:MF_04071 ;
rdf:type edam:operation_0300 .
?targetMotifMatch501 faldo:location ?targetMotifMatchRegionMatch502 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04071504 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP03468MF_04071495 .
?targetMotifMatchRegionMatch502 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04071503 .
?targetMotifMatchRegionMatchBeginMF_04071503 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04071496 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04071504 edam:has_input signature:MF_04071 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03468MF_04071493, 1, (STRLEN(?templateMotifCigarP03468MF_04071493) - STRLEN(REPLACE(?templateMotifCigarP03468MF_04071493, CONCAT('^(?:-*[^-]){', STR(((303 - ?templateMotifSequenceMatchBeginPositionP03468494) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1505) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03468MF_04071495, 1, (STRLEN(?targetMotifMatchCigarP03468MF_04071495) - STRLEN(REPLACE(?targetMotifMatchCigarP03468MF_04071495, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1505), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03468MF_04071495, 1, (STRLEN(?targetMotifMatchCigarP03468MF_04071495) - STRLEN(REPLACE(?targetMotifMatchCigarP03468MF_04071495, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1505), '}'), '')))), '[^-]', ''))) AS ?step2506) .
BIND(((?step2506 + ?targetMotifMatchRegionMatchBeginPositionMF_04071496) - 1) AS ?thisPositionOn152) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03468MF_04071493, 1, (STRLEN(?templateMotifCigarP03468MF_04071493) - STRLEN(REPLACE(?templateMotifCigarP03468MF_04071493, CONCAT('^(?:-*[^-]){', STR(((320 - ?templateMotifSequenceMatchBeginPositionP03468494) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1507) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03468MF_04071495, 1, (STRLEN(?targetMotifMatchCigarP03468MF_04071495) - STRLEN(REPLACE(?targetMotifMatchCigarP03468MF_04071495, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1507), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03468MF_04071495, 1, (STRLEN(?targetMotifMatchCigarP03468MF_04071495) - STRLEN(REPLACE(?targetMotifMatchCigarP03468MF_04071495, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1507), '}'), '')))), '[^-]', ''))) AS ?step2508) .
BIND(((?step2508 + ?targetMotifMatchRegionMatchBeginPositionMF_04071496) - 1) AS ?thisPositionOn153) .
BIND(?this AS ?pfs1t509) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn152))) AS ?pfsb150) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn153))) AS ?pfse151) .
FILTER (REGEX('C[ARNDCQEGHILKMFPSTWYVBZJUOX]*C', SUBSTR(?thisSequenceValue, ?thisPositionOn152, (?thisPositionOn153 - ?thisPositionOn152)))) .
BIND(URI(CONCAT(STR(?this), '#MF_04071a149')) AS ?annotation149) .
BIND(?this AS ?pfs148) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch514 faldo:location ?templateMotifSequenceMatchRegionP03468515 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP03468517 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP03468MF_04071510 .
?templateMotifSequenceMatchRegionP03468515 faldo:begin ?templateMotifSequenceMatchBeginP03468516 .
?templateMotifSequenceMatchBeginP03468516 faldo:position ?templateMotifSequenceMatchBeginPositionP03468511 ;
faldo:reference isoform:P03468-1 .
?templateMotifSequenceProfileAlignmentOperationP03468517 edam:has_input signature:MF_04071 ;
rdf:type edam:operation_0300 .
?targetMotifMatch518 faldo:location ?targetMotifMatchRegionMatch519 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04071521 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP03468MF_04071512 .
?targetMotifMatchRegionMatch519 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04071520 .
?targetMotifMatchRegionMatchBeginMF_04071520 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04071513 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04071521 edam:has_input signature:MF_04071 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03468MF_04071510, 1, (STRLEN(?templateMotifCigarP03468MF_04071510) - STRLEN(REPLACE(?templateMotifCigarP03468MF_04071510, CONCAT('^(?:-*[^-]){', STR(((406 - ?templateMotifSequenceMatchBeginPositionP03468511) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1522) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03468MF_04071512, 1, (STRLEN(?targetMotifMatchCigarP03468MF_04071512) - STRLEN(REPLACE(?targetMotifMatchCigarP03468MF_04071512, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1522), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03468MF_04071512, 1, (STRLEN(?targetMotifMatchCigarP03468MF_04071512) - STRLEN(REPLACE(?targetMotifMatchCigarP03468MF_04071512, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1522), '}'), '')))), '[^-]', ''))) AS ?step2523) .
BIND(((?step2523 + ?targetMotifMatchRegionMatchBeginPositionMF_04071513) - 1) AS ?thisPositionOn158) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03468MF_04071510, 1, (STRLEN(?templateMotifCigarP03468MF_04071510) - STRLEN(REPLACE(?templateMotifCigarP03468MF_04071510, CONCAT('^(?:-*[^-]){', STR(((431 - ?templateMotifSequenceMatchBeginPositionP03468511) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1524) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03468MF_04071512, 1, (STRLEN(?targetMotifMatchCigarP03468MF_04071512) - STRLEN(REPLACE(?targetMotifMatchCigarP03468MF_04071512, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1524), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03468MF_04071512, 1, (STRLEN(?targetMotifMatchCigarP03468MF_04071512) - STRLEN(REPLACE(?targetMotifMatchCigarP03468MF_04071512, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1524), '}'), '')))), '[^-]', ''))) AS ?step2525) .
BIND(((?step2525 + ?targetMotifMatchRegionMatchBeginPositionMF_04071513) - 1) AS ?thisPositionOn159) .
BIND(?this AS ?pfs1t526) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn158))) AS ?pfsb156) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn159))) AS ?pfse157) .
FILTER (REGEX('C[ARNDCQEGHILKMFPSTWYVBZJUOX]*C', SUBSTR(?thisSequenceValue, ?thisPositionOn158, (?thisPositionOn159 - ?thisPositionOn158)))) .
BIND(URI(CONCAT(STR(?this), '#MF_04071a155')) AS ?annotation155) .
BIND(?this AS ?pfs154) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch531 faldo:location ?templateMotifSequenceMatchRegionP27907532 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP27907534 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP27907MF_04071527 .
?templateMotifSequenceMatchRegionP27907532 faldo:begin ?templateMotifSequenceMatchBeginP27907533 .
?templateMotifSequenceMatchBeginP27907533 faldo:position ?templateMotifSequenceMatchBeginPositionP27907528 ;
faldo:reference isoform:P27907-1 .
?templateMotifSequenceProfileAlignmentOperationP27907534 edam:has_input signature:MF_04071 ;
rdf:type edam:operation_0300 .
?targetMotifMatch535 faldo:location ?targetMotifMatchRegionMatch536 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04071538 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP27907MF_04071529 .
?targetMotifMatchRegionMatch536 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04071537 .
?targetMotifMatchRegionMatchBeginMF_04071537 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04071530 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04071538 edam:has_input signature:MF_04071 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:197912 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP27907MF_04071527, 1, (STRLEN(?templateMotifCigarP27907MF_04071527) - STRLEN(REPLACE(?templateMotifCigarP27907MF_04071527, CONCAT('^(?:-*[^-]){', STR(((86 - ?templateMotifSequenceMatchBeginPositionP27907528) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1539) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP27907MF_04071529, 1, (STRLEN(?targetMotifMatchCigarP27907MF_04071529) - STRLEN(REPLACE(?targetMotifMatchCigarP27907MF_04071529, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1539), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP27907MF_04071529, 1, (STRLEN(?targetMotifMatchCigarP27907MF_04071529) - STRLEN(REPLACE(?targetMotifMatchCigarP27907MF_04071529, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1539), '}'), '')))), '[^-]', ''))) AS ?step2540) .
BIND(((?step2540 + ?targetMotifMatchRegionMatchBeginPositionMF_04071530) - 1) AS ?thisPositionOn164) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP27907MF_04071527, 1, (STRLEN(?templateMotifCigarP27907MF_04071527) - STRLEN(REPLACE(?templateMotifCigarP27907MF_04071527, CONCAT('^(?:-*[^-]){', STR(((419 - ?templateMotifSequenceMatchBeginPositionP27907528) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1541) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP27907MF_04071529, 1, (STRLEN(?targetMotifMatchCigarP27907MF_04071529) - STRLEN(REPLACE(?targetMotifMatchCigarP27907MF_04071529, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1541), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP27907MF_04071529, 1, (STRLEN(?targetMotifMatchCigarP27907MF_04071529) - STRLEN(REPLACE(?targetMotifMatchCigarP27907MF_04071529, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1541), '}'), '')))), '[^-]', ''))) AS ?step2542) .
BIND(((?step2542 + ?targetMotifMatchRegionMatchBeginPositionMF_04071530) - 1) AS ?thisPositionOn165) .
BIND(?this AS ?pfs2t543) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn164))) AS ?pfsb162) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn165))) AS ?pfse163) .
FILTER (REGEX('C[ARNDCQEGHILKMFPSTWYVBZJUOX]*C', SUBSTR(?thisSequenceValue, ?thisPositionOn164, (?thisPositionOn165 - ?thisPositionOn164)))) .
BIND(URI(CONCAT(STR(?this), '#MF_04071a161')) AS ?annotation161) .
BIND(?this AS ?pfs160) .
}
OPTIONAL {
?this up:annotation ?samtransmembrane544 ;
up:sequence ?thisSequence .
?samtransmembrane544 up:range ?samtransmembraner545 ;
rdf:type up:Transmembrane_Annotation .
?samtransmembraner545 faldo:begin ?samtransmembraneb546 ;
faldo:end ?samtransmembranee547 .
?samtransmembraneb546 faldo:position ?samtransmembranebp548 ;
faldo:reference ?thisSequence .
?samtransmembranee547 faldo:position ?samtransmembraneep549 ;
faldo:reference ?thisSequence .
BIND(?this AS ?sam166) .
}
BIND(URI(CONCAT(STR(?this), '#MF_04071a172')) AS ?keyword172) .
BIND(URI(CONCAT(STR(?this), '#MF_04071a173')) AS ?keyword173) .
BIND(URI(CONCAT(STR(?this), '#MF_04071a174')) AS ?keyword174) .
}
"xsd:string |
