| http://purl.uniprot.org/unirules/MF_00186#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:76227 up:source unirule:MF_00186 .
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?this up:alternativeName ?name1 ,
?name2 ;
up:annotation ?annotation4 ,
?annotation5 ,
?annotation7 ,
?annotation8 ;
up:classifiedWith GO:0004370 ,
GO:0005524 ,
GO:0019563 ,
keyword:319 ,
keyword:418 ,
keyword:547 ,
keyword:67 ,
keyword:808 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.7.1.30' ;
up:fullName 'Glycerol kinase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'ATP:glycerol 3-phosphotransferase' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'Glycerokinase' ;
up:shortName 'GK' ;
rdf:type up:Structured_Name .
?gene3 skos:prefLabel 'glpK' .
?annotation4 a up:Function_Annotation ;
rdfs:comment 'Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn-glycerol 3-phosphate.' .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity ;
up:enzymeClass .
?annotation7 a up:Pathway_Annotation ;
rdfs:comment 'Polyol metabolism; glycerol degradation via glycerol kinase pathway; sn-glycerol 3-phosphate from glycerol: step 1/1.' .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the FGGY kinase family.' .
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?case11 up:classifiedWith keyword:21 ,
keyword:479 ,
keyword:862 .
?pfs13 up:annotation ?annotation14 .
?annotation14 faldo:begin ?pfsb15 ;
faldo:end ?pfse16 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Phosphohistidine; by HPr' .
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rdf:type faldo:ExactPosition .
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rdf:type up:Binding_Site_Annotation .
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rdf:type faldo:ExactPosition .
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rdf:type faldo:ExactPosition .
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faldo:end ?pfse29 ;
up:ligand ?ligand30 ;
rdf:type up:Binding_Site_Annotation .
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rdf:type faldo:ExactPosition .
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?ligand30 rdfs:subClassOf chebi:30616 .
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faldo:end ?pfse36 ;
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rdf:type up:Binding_Site_Annotation .
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rdf:type faldo:ExactPosition .
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?ligand37 rdfs:subClassOf chebi:57597 .
?pfs40 up:annotation ?annotation41 .
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faldo:end ?pfse43 ;
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rdf:type up:Binding_Site_Annotation .
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rdf:type faldo:ExactPosition .
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rdf:type up:Binding_Site_Annotation .
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rdf:type faldo:ExactPosition .
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rdf:type faldo:ExactPosition .
?ligand51 rdfs:subClassOf chebi:30616 .
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rdf:type up:Binding_Site_Annotation .
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rdf:type faldo:ExactPosition .
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rdf:type faldo:ExactPosition .
?ligand58 rdfs:subClassOf chebi:456216 .
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rdf:type up:Binding_Site_Annotation .
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rdf:type faldo:ExactPosition .
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?ligand65 rdfs:subClassOf chebi:17754 .
?pfs68 up:annotation ?annotation69 .
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faldo:end ?pfse71 ;
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rdf:type up:Binding_Site_Annotation .
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rdf:type faldo:ExactPosition .
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?ligand72 rdfs:subClassOf chebi:57597 .
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rdf:type up:Binding_Site_Annotation .
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rdf:type faldo:ExactPosition .
?pfse78 faldo:position ?thisPositionOn81 ;
rdf:type faldo:ExactPosition .
?ligand79 rdfs:subClassOf chebi:17754 .
?pfs82 up:annotation ?annotation83 .
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faldo:end ?pfse85 ;
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rdf:type up:Binding_Site_Annotation .
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rdf:type faldo:ExactPosition .
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rdf:type faldo:ExactPosition .
?ligand86 rdfs:subClassOf chebi:57597 .
?pfs89 up:annotation ?annotation90 .
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faldo:end ?pfse92 ;
up:ligand ?ligand93 ;
rdf:type up:Binding_Site_Annotation .
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rdf:type faldo:ExactPosition .
?pfse92 faldo:position ?thisPositionOn95 ;
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?ligand93 rdfs:subClassOf chebi:17754 .
?pfs96 up:annotation ?annotation97 .
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faldo:end ?pfse99 ;
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rdf:type up:Binding_Site_Annotation .
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rdf:type faldo:ExactPosition .
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rdf:type faldo:ExactPosition .
?ligand100 rdfs:subClassOf chebi:57597 .
?pfs103 up:annotation ?annotation104 .
?annotation104 faldo:begin ?pfsb105 ;
faldo:end ?pfse106 ;
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rdf:type up:Binding_Site_Annotation .
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rdf:type faldo:ExactPosition .
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rdf:type faldo:ExactPosition .
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rdf:type up:Binding_Site_Annotation .
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rdf:type faldo:ExactPosition .
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rdf:type faldo:ExactPosition .
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rdf:type up:Binding_Site_Annotation .
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rdf:type faldo:ExactPosition .
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rdf:type faldo:ExactPosition .
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rdf:type up:Binding_Site_Annotation .
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rdf:type faldo:ExactPosition .
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rdf:type up:Binding_Site_Annotation .
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rdf:type faldo:ExactPosition .
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rdf:type up:Binding_Site_Annotation .
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rdf:type faldo:ExactPosition .
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rdf:type faldo:ExactPosition .
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rdf:type up:Binding_Site_Annotation .
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rdf:type faldo:ExactPosition .
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rdf:type up:Binding_Site_Annotation .
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rdf:type faldo:ExactPosition .
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rdf:type up:Binding_Site_Annotation .
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rdf:type up:Binding_Site_Annotation .
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rdf:type up:Binding_Site_Annotation .
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rdf:type up:Binding_Site_Annotation .
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rdf:object ?annotation132 .
_:76330 a rdf:Statement ;
up:source unirule:MF_00186 ;
rdf:subject ?pfs138 ;
rdf:predicate up:annotation ;
rdf:object ?annotation139 .
_:76331 a rdf:Statement ;
up:attribution _:76265 ;
rdf:subject ?pfs138 ;
rdf:predicate up:annotation ;
rdf:object ?annotation139 .
_:76332 a rdf:Statement ;
up:source unirule:MF_00186 ;
rdf:subject ?pfs145 ;
rdf:predicate up:annotation ;
rdf:object ?annotation146 .
_:76333 a rdf:Statement ;
up:attribution _:76266 ;
rdf:subject ?pfs145 ;
rdf:predicate up:annotation ;
rdf:object ?annotation146 .
_:76334 a rdf:Statement ;
up:source unirule:MF_00186 ;
rdf:subject ?pfs152 ;
rdf:predicate up:annotation ;
rdf:object ?annotation153 .
_:76335 a rdf:Statement ;
up:attribution _:76267 ;
rdf:subject ?pfs152 ;
rdf:predicate up:annotation ;
rdf:object ?annotation153 .
_:76336 a rdf:Statement ;
up:source unirule:MF_00186 ;
rdf:subject ?pfs159 ;
rdf:predicate up:annotation ;
rdf:object ?annotation160 .
_:76337 a rdf:Statement ;
up:attribution _:76268 ;
rdf:subject ?pfs159 ;
rdf:predicate up:annotation ;
rdf:object ?annotation160 .
_:76338 a rdf:Statement ;
up:source unirule:MF_00186 ;
rdf:subject ?pfs166 ;
rdf:predicate up:annotation ;
rdf:object ?annotation167 .
_:76339 a rdf:Statement ;
up:attribution _:76269 ;
rdf:subject ?pfs166 ;
rdf:predicate up:annotation ;
rdf:object ?annotation167 .
_:76340 a rdf:Statement ;
up:source unirule:MF_00186 ;
rdf:subject ?pfs173 ;
rdf:predicate up:annotation ;
rdf:object ?annotation174 .
_:76341 a rdf:Statement ;
up:attribution _:76270 ;
rdf:subject ?pfs173 ;
rdf:predicate up:annotation ;
rdf:object ?annotation174 .
_:76342 a rdf:Statement ;
up:source unirule:MF_00186 ;
rdf:subject ?pfs180 ;
rdf:predicate up:annotation ;
rdf:object ?annotation181 .
_:76343 a rdf:Statement ;
up:attribution _:76271 ;
rdf:subject ?pfs180 ;
rdf:predicate up:annotation ;
rdf:object ?annotation181 .
_:76344 a rdf:Statement ;
up:source unirule:MF_00186 ;
rdf:subject ?pfs187 ;
rdf:predicate up:annotation ;
rdf:object ?annotation188 .
_:76345 a rdf:Statement ;
up:attribution _:76272 ;
rdf:subject ?pfs187 ;
rdf:predicate up:annotation ;
rdf:object ?annotation188 .
_:76346 a rdf:Statement ;
up:source unirule:MF_00186 ;
rdf:subject ?pfs194 ;
rdf:predicate up:annotation ;
rdf:object ?annotation195 .
_:76347 a rdf:Statement ;
up:attribution _:76273 ;
rdf:subject ?pfs194 ;
rdf:predicate up:annotation ;
rdf:object ?annotation195 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00186
#Rule MF_00186 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-02
VALUES ?supertaxon201 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00186 .
?thisOrganism rdfs:subClassOf+ ?supertaxon201 .
BIND(URI(CONCAT(STR(?this), '#MF_00186a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00186a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00186a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_00186a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00186a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00186a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_00186a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch206 faldo:location ?templateMotifSequenceMatchRegionO34153207 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO34153209 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO34153MF_00186202 .
?templateMotifSequenceMatchRegionO34153207 faldo:begin ?templateMotifSequenceMatchBeginO34153208 .
?templateMotifSequenceMatchBeginO34153208 faldo:position ?templateMotifSequenceMatchBeginPositionO34153203 ;
faldo:reference isoform:O34153-1 .
?templateMotifSequenceProfileAlignmentOperationO34153209 edam:has_input signature:MF_00186 ;
rdf:type edam:operation_0300 .
?targetMotifMatch210 faldo:location ?targetMotifMatchRegionMatch211 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00186213 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO34153MF_00186204 .
?targetMotifMatchRegionMatch211 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00186212 .
?targetMotifMatchRegionMatchBeginMF_00186212 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00186205 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00186213 edam:has_input signature:MF_00186 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:91061 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO34153MF_00186202, 1, (STRLEN(?templateMotifCigarO34153MF_00186202) - STRLEN(REPLACE(?templateMotifCigarO34153MF_00186202, CONCAT('^(?:-*[^-]){', STR(((232 - ?templateMotifSequenceMatchBeginPositionO34153203) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1214) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO34153MF_00186204, 1, (STRLEN(?targetMotifMatchCigarO34153MF_00186204) - STRLEN(REPLACE(?targetMotifMatchCigarO34153MF_00186204, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1214), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO34153MF_00186204, 1, (STRLEN(?targetMotifMatchCigarO34153MF_00186204) - STRLEN(REPLACE(?targetMotifMatchCigarO34153MF_00186204, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1214), '}'), '')))), '[^-]', ''))) AS ?step2215) .
BIND(((?step2215 + ?targetMotifMatchRegionMatchBeginPositionMF_00186205) - 1) AS ?thisPositionOn17) .
BIND(?thisPositionOn17 AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t216) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb15) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse16) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn17, 1) = 'H')) .
BIND(?this AS ?pfs13) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch221 faldo:location ?templateMotifSequenceMatchRegionP0A6F3222 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6F3224 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6F3MF_00186217 .
?templateMotifSequenceMatchRegionP0A6F3222 faldo:begin ?templateMotifSequenceMatchBeginP0A6F3223 .
?templateMotifSequenceMatchBeginP0A6F3223 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6F3218 ;
faldo:reference isoform:P0A6F3-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6F3224 edam:has_input signature:MF_00186 ;
rdf:type edam:operation_0300 .
?targetMotifMatch225 faldo:location ?targetMotifMatchRegionMatch226 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00186228 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6F3MF_00186219 .
?targetMotifMatchRegionMatch226 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00186227 .
?targetMotifMatchRegionMatchBeginMF_00186227 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00186220 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00186228 edam:has_input signature:MF_00186 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6F3MF_00186217, 1, (STRLEN(?templateMotifCigarP0A6F3MF_00186217) - STRLEN(REPLACE(?templateMotifCigarP0A6F3MF_00186217, CONCAT('^(?:-*[^-]){', STR(((14 - ?templateMotifSequenceMatchBeginPositionP0A6F3218) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1229) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6F3MF_00186219, 1, (STRLEN(?targetMotifMatchCigarP0A6F3MF_00186219) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F3MF_00186219, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1229), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6F3MF_00186219, 1, (STRLEN(?targetMotifMatchCigarP0A6F3MF_00186219) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F3MF_00186219, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1229), '}'), '')))), '[^-]', ''))) AS ?step2230) .
BIND(((?step2230 + ?targetMotifMatchRegionMatchBeginPositionMF_00186220) - 1) AS ?thisPositionOn24) .
BIND(?thisPositionOn24 AS ?thisPositionOn25) .
BIND(?this AS ?pfs2t231) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse22) .
FILTER (REGEX('[TS]', SUBSTR(?thisSequenceValue, ?thisPositionOn24, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00186a20')) AS ?annotation20) .
BIND(?this AS ?pfs19) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch236 faldo:location ?templateMotifSequenceMatchRegionP0A6F3237 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6F3239 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6F3MF_00186232 .
?templateMotifSequenceMatchRegionP0A6F3237 faldo:begin ?templateMotifSequenceMatchBeginP0A6F3238 .
?templateMotifSequenceMatchBeginP0A6F3238 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6F3233 ;
faldo:reference isoform:P0A6F3-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6F3239 edam:has_input signature:MF_00186 ;
rdf:type edam:operation_0300 .
?targetMotifMatch240 faldo:location ?targetMotifMatchRegionMatch241 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00186243 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6F3MF_00186234 .
?targetMotifMatchRegionMatch241 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00186242 .
?targetMotifMatchRegionMatchBeginMF_00186242 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00186235 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00186243 edam:has_input signature:MF_00186 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6F3MF_00186232, 1, (STRLEN(?templateMotifCigarP0A6F3MF_00186232) - STRLEN(REPLACE(?templateMotifCigarP0A6F3MF_00186232, CONCAT('^(?:-*[^-]){', STR(((14 - ?templateMotifSequenceMatchBeginPositionP0A6F3233) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1244) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6F3MF_00186234, 1, (STRLEN(?targetMotifMatchCigarP0A6F3MF_00186234) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F3MF_00186234, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1244), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6F3MF_00186234, 1, (STRLEN(?targetMotifMatchCigarP0A6F3MF_00186234) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F3MF_00186234, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1244), '}'), '')))), '[^-]', ''))) AS ?step2245) .
BIND(((?step2245 + ?targetMotifMatchRegionMatchBeginPositionMF_00186235) - 1) AS ?thisPositionOn31) .
BIND(?thisPositionOn31 AS ?thisPositionOn32) .
BIND(?this AS ?pfs2t246) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb28) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse29) .
FILTER (REGEX('[TS]', SUBSTR(?thisSequenceValue, ?thisPositionOn31, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00186a27')) AS ?annotation27) .
BIND(?this AS ?pfs26) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch251 faldo:location ?templateMotifSequenceMatchRegionP0A6F3252 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6F3254 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6F3MF_00186247 .
?templateMotifSequenceMatchRegionP0A6F3252 faldo:begin ?templateMotifSequenceMatchBeginP0A6F3253 .
?templateMotifSequenceMatchBeginP0A6F3253 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6F3248 ;
faldo:reference isoform:P0A6F3-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6F3254 edam:has_input signature:MF_00186 ;
rdf:type edam:operation_0300 .
?targetMotifMatch255 faldo:location ?targetMotifMatchRegionMatch256 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00186258 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6F3MF_00186249 .
?targetMotifMatchRegionMatch256 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00186257 .
?targetMotifMatchRegionMatchBeginMF_00186257 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00186250 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00186258 edam:has_input signature:MF_00186 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6F3MF_00186247, 1, (STRLEN(?templateMotifCigarP0A6F3MF_00186247) - STRLEN(REPLACE(?templateMotifCigarP0A6F3MF_00186247, CONCAT('^(?:-*[^-]){', STR(((14 - ?templateMotifSequenceMatchBeginPositionP0A6F3248) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1259) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6F3MF_00186249, 1, (STRLEN(?targetMotifMatchCigarP0A6F3MF_00186249) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F3MF_00186249, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1259), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6F3MF_00186249, 1, (STRLEN(?targetMotifMatchCigarP0A6F3MF_00186249) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F3MF_00186249, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1259), '}'), '')))), '[^-]', ''))) AS ?step2260) .
BIND(((?step2260 + ?targetMotifMatchRegionMatchBeginPositionMF_00186250) - 1) AS ?thisPositionOn38) .
BIND(?thisPositionOn38 AS ?thisPositionOn39) .
BIND(?this AS ?pfs2t261) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfsb35) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfse36) .
FILTER (REGEX('[TS]', SUBSTR(?thisSequenceValue, ?thisPositionOn38, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00186a34')) AS ?annotation34) .
BIND(?this AS ?pfs33) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch266 faldo:location ?templateMotifSequenceMatchRegionP0A6F3267 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6F3269 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6F3MF_00186262 .
?templateMotifSequenceMatchRegionP0A6F3267 faldo:begin ?templateMotifSequenceMatchBeginP0A6F3268 .
?templateMotifSequenceMatchBeginP0A6F3268 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6F3263 ;
faldo:reference isoform:P0A6F3-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6F3269 edam:has_input signature:MF_00186 ;
rdf:type edam:operation_0300 .
?targetMotifMatch270 faldo:location ?targetMotifMatchRegionMatch271 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00186273 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6F3MF_00186264 .
?targetMotifMatchRegionMatch271 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00186272 .
?targetMotifMatchRegionMatchBeginMF_00186272 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00186265 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00186273 edam:has_input signature:MF_00186 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6F3MF_00186262, 1, (STRLEN(?templateMotifCigarP0A6F3MF_00186262) - STRLEN(REPLACE(?templateMotifCigarP0A6F3MF_00186262, CONCAT('^(?:-*[^-]){', STR(((15 - ?templateMotifSequenceMatchBeginPositionP0A6F3263) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1274) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6F3MF_00186264, 1, (STRLEN(?targetMotifMatchCigarP0A6F3MF_00186264) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F3MF_00186264, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1274), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6F3MF_00186264, 1, (STRLEN(?targetMotifMatchCigarP0A6F3MF_00186264) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F3MF_00186264, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1274), '}'), '')))), '[^-]', ''))) AS ?step2275) .
BIND(((?step2275 + ?targetMotifMatchRegionMatchBeginPositionMF_00186265) - 1) AS ?thisPositionOn45) .
BIND(?thisPositionOn45 AS ?thisPositionOn46) .
BIND(?this AS ?pfs2t276) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfsb42) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfse43) .
FILTER (REGEX('[TS]', SUBSTR(?thisSequenceValue, ?thisPositionOn45, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00186a41')) AS ?annotation41) .
BIND(?this AS ?pfs40) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch281 faldo:location ?templateMotifSequenceMatchRegionP0A6F3282 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6F3284 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6F3MF_00186277 .
?templateMotifSequenceMatchRegionP0A6F3282 faldo:begin ?templateMotifSequenceMatchBeginP0A6F3283 .
?templateMotifSequenceMatchBeginP0A6F3283 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6F3278 ;
faldo:reference isoform:P0A6F3-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6F3284 edam:has_input signature:MF_00186 ;
rdf:type edam:operation_0300 .
?targetMotifMatch285 faldo:location ?targetMotifMatchRegionMatch286 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00186288 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6F3MF_00186279 .
?targetMotifMatchRegionMatch286 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00186287 .
?targetMotifMatchRegionMatchBeginMF_00186287 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00186280 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00186288 edam:has_input signature:MF_00186 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6F3MF_00186277, 1, (STRLEN(?templateMotifCigarP0A6F3MF_00186277) - STRLEN(REPLACE(?templateMotifCigarP0A6F3MF_00186277, CONCAT('^(?:-*[^-]){', STR(((16 - ?templateMotifSequenceMatchBeginPositionP0A6F3278) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1289) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6F3MF_00186279, 1, (STRLEN(?targetMotifMatchCigarP0A6F3MF_00186279) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F3MF_00186279, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1289), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6F3MF_00186279, 1, (STRLEN(?targetMotifMatchCigarP0A6F3MF_00186279) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F3MF_00186279, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1289), '}'), '')))), '[^-]', ''))) AS ?step2290) .
BIND(((?step2290 + ?targetMotifMatchRegionMatchBeginPositionMF_00186280) - 1) AS ?thisPositionOn52) .
BIND(?thisPositionOn52 AS ?thisPositionOn53) .
BIND(?this AS ?pfs2t291) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfsb49) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfse50) .
FILTER (REGEX('[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn52, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00186a48')) AS ?annotation48) .
BIND(?this AS ?pfs47) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch296 faldo:location ?templateMotifSequenceMatchRegionP0A6F3297 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6F3299 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6F3MF_00186292 .
?templateMotifSequenceMatchRegionP0A6F3297 faldo:begin ?templateMotifSequenceMatchBeginP0A6F3298 .
?templateMotifSequenceMatchBeginP0A6F3298 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6F3293 ;
faldo:reference isoform:P0A6F3-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6F3299 edam:has_input signature:MF_00186 ;
rdf:type edam:operation_0300 .
?targetMotifMatch300 faldo:location ?targetMotifMatchRegionMatch301 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00186303 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6F3MF_00186294 .
?targetMotifMatchRegionMatch301 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00186302 .
?targetMotifMatchRegionMatchBeginMF_00186302 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00186295 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00186303 edam:has_input signature:MF_00186 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6F3MF_00186292, 1, (STRLEN(?templateMotifCigarP0A6F3MF_00186292) - STRLEN(REPLACE(?templateMotifCigarP0A6F3MF_00186292, CONCAT('^(?:-*[^-]){', STR(((18 - ?templateMotifSequenceMatchBeginPositionP0A6F3293) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1304) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6F3MF_00186294, 1, (STRLEN(?targetMotifMatchCigarP0A6F3MF_00186294) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F3MF_00186294, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1304), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6F3MF_00186294, 1, (STRLEN(?targetMotifMatchCigarP0A6F3MF_00186294) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F3MF_00186294, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1304), '}'), '')))), '[^-]', ''))) AS ?step2305) .
BIND(((?step2305 + ?targetMotifMatchRegionMatchBeginPositionMF_00186295) - 1) AS ?thisPositionOn59) .
BIND(?thisPositionOn59 AS ?thisPositionOn60) .
BIND(?this AS ?pfs2t306) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfsb56) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfse57) .
FILTER (REGEX('[RK]', SUBSTR(?thisSequenceValue, ?thisPositionOn59, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00186a55')) AS ?annotation55) .
BIND(?this AS ?pfs54) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch311 faldo:location ?templateMotifSequenceMatchRegionP0A6F3312 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6F3314 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6F3MF_00186307 .
?templateMotifSequenceMatchRegionP0A6F3312 faldo:begin ?templateMotifSequenceMatchBeginP0A6F3313 .
?templateMotifSequenceMatchBeginP0A6F3313 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6F3308 ;
faldo:reference isoform:P0A6F3-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6F3314 edam:has_input signature:MF_00186 ;
rdf:type edam:operation_0300 .
?targetMotifMatch315 faldo:location ?targetMotifMatchRegionMatch316 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00186318 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6F3MF_00186309 .
?targetMotifMatchRegionMatch316 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00186317 .
?targetMotifMatchRegionMatchBeginMF_00186317 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00186310 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00186318 edam:has_input signature:MF_00186 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6F3MF_00186307, 1, (STRLEN(?templateMotifCigarP0A6F3MF_00186307) - STRLEN(REPLACE(?templateMotifCigarP0A6F3MF_00186307, CONCAT('^(?:-*[^-]){', STR(((84 - ?templateMotifSequenceMatchBeginPositionP0A6F3308) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1319) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6F3MF_00186309, 1, (STRLEN(?targetMotifMatchCigarP0A6F3MF_00186309) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F3MF_00186309, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1319), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6F3MF_00186309, 1, (STRLEN(?targetMotifMatchCigarP0A6F3MF_00186309) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F3MF_00186309, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1319), '}'), '')))), '[^-]', ''))) AS ?step2320) .
BIND(((?step2320 + ?targetMotifMatchRegionMatchBeginPositionMF_00186310) - 1) AS ?thisPositionOn66) .
BIND(?thisPositionOn66 AS ?thisPositionOn67) .
BIND(?this AS ?pfs2t321) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfsb63) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfse64) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn66, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_00186a62')) AS ?annotation62) .
BIND(?this AS ?pfs61) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch326 faldo:location ?templateMotifSequenceMatchRegionP0A6F3327 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6F3329 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6F3MF_00186322 .
?templateMotifSequenceMatchRegionP0A6F3327 faldo:begin ?templateMotifSequenceMatchBeginP0A6F3328 .
?templateMotifSequenceMatchBeginP0A6F3328 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6F3323 ;
faldo:reference isoform:P0A6F3-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6F3329 edam:has_input signature:MF_00186 ;
rdf:type edam:operation_0300 .
?targetMotifMatch330 faldo:location ?targetMotifMatchRegionMatch331 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00186333 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6F3MF_00186324 .
?targetMotifMatchRegionMatch331 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00186332 .
?targetMotifMatchRegionMatchBeginMF_00186332 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00186325 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00186333 edam:has_input signature:MF_00186 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6F3MF_00186322, 1, (STRLEN(?templateMotifCigarP0A6F3MF_00186322) - STRLEN(REPLACE(?templateMotifCigarP0A6F3MF_00186322, CONCAT('^(?:-*[^-]){', STR(((84 - ?templateMotifSequenceMatchBeginPositionP0A6F3323) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1334) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6F3MF_00186324, 1, (STRLEN(?targetMotifMatchCigarP0A6F3MF_00186324) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F3MF_00186324, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1334), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6F3MF_00186324, 1, (STRLEN(?targetMotifMatchCigarP0A6F3MF_00186324) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F3MF_00186324, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1334), '}'), '')))), '[^-]', ''))) AS ?step2335) .
BIND(((?step2335 + ?targetMotifMatchRegionMatchBeginPositionMF_00186325) - 1) AS ?thisPositionOn73) .
BIND(?thisPositionOn73 AS ?thisPositionOn74) .
BIND(?this AS ?pfs2t336) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfsb70) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn74))) AS ?pfse71) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn73, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_00186a69')) AS ?annotation69) .
BIND(?this AS ?pfs68) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch341 faldo:location ?templateMotifSequenceMatchRegionP0A6F3342 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6F3344 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6F3MF_00186337 .
?templateMotifSequenceMatchRegionP0A6F3342 faldo:begin ?templateMotifSequenceMatchBeginP0A6F3343 .
?templateMotifSequenceMatchBeginP0A6F3343 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6F3338 ;
faldo:reference isoform:P0A6F3-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6F3344 edam:has_input signature:MF_00186 ;
rdf:type edam:operation_0300 .
?targetMotifMatch345 faldo:location ?targetMotifMatchRegionMatch346 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00186348 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6F3MF_00186339 .
?targetMotifMatchRegionMatch346 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00186347 .
?targetMotifMatchRegionMatchBeginMF_00186347 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00186340 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00186348 edam:has_input signature:MF_00186 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6F3MF_00186337, 1, (STRLEN(?templateMotifCigarP0A6F3MF_00186337) - STRLEN(REPLACE(?templateMotifCigarP0A6F3MF_00186337, CONCAT('^(?:-*[^-]){', STR(((85 - ?templateMotifSequenceMatchBeginPositionP0A6F3338) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1349) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6F3MF_00186339, 1, (STRLEN(?targetMotifMatchCigarP0A6F3MF_00186339) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F3MF_00186339, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1349), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6F3MF_00186339, 1, (STRLEN(?targetMotifMatchCigarP0A6F3MF_00186339) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F3MF_00186339, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1349), '}'), '')))), '[^-]', ''))) AS ?step2350) .
BIND(((?step2350 + ?targetMotifMatchRegionMatchBeginPositionMF_00186340) - 1) AS ?thisPositionOn80) .
BIND(?thisPositionOn80 AS ?thisPositionOn81) .
BIND(?this AS ?pfs2t351) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn80))) AS ?pfsb77) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn81))) AS ?pfse78) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn80, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_00186a76')) AS ?annotation76) .
BIND(?this AS ?pfs75) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch356 faldo:location ?templateMotifSequenceMatchRegionP0A6F3357 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6F3359 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6F3MF_00186352 .
?templateMotifSequenceMatchRegionP0A6F3357 faldo:begin ?templateMotifSequenceMatchBeginP0A6F3358 .
?templateMotifSequenceMatchBeginP0A6F3358 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6F3353 ;
faldo:reference isoform:P0A6F3-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6F3359 edam:has_input signature:MF_00186 ;
rdf:type edam:operation_0300 .
?targetMotifMatch360 faldo:location ?targetMotifMatchRegionMatch361 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00186363 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6F3MF_00186354 .
?targetMotifMatchRegionMatch361 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00186362 .
?targetMotifMatchRegionMatchBeginMF_00186362 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00186355 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00186363 edam:has_input signature:MF_00186 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6F3MF_00186352, 1, (STRLEN(?templateMotifCigarP0A6F3MF_00186352) - STRLEN(REPLACE(?templateMotifCigarP0A6F3MF_00186352, CONCAT('^(?:-*[^-]){', STR(((85 - ?templateMotifSequenceMatchBeginPositionP0A6F3353) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1364) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6F3MF_00186354, 1, (STRLEN(?targetMotifMatchCigarP0A6F3MF_00186354) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F3MF_00186354, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1364), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6F3MF_00186354, 1, (STRLEN(?targetMotifMatchCigarP0A6F3MF_00186354) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F3MF_00186354, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1364), '}'), '')))), '[^-]', ''))) AS ?step2365) .
BIND(((?step2365 + ?targetMotifMatchRegionMatchBeginPositionMF_00186355) - 1) AS ?thisPositionOn87) .
BIND(?thisPositionOn87 AS ?thisPositionOn88) .
BIND(?this AS ?pfs2t366) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn87))) AS ?pfsb84) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn88))) AS ?pfse85) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn87, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_00186a83')) AS ?annotation83) .
BIND(?this AS ?pfs82) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch371 faldo:location ?templateMotifSequenceMatchRegionP0A6F3372 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6F3374 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6F3MF_00186367 .
?templateMotifSequenceMatchRegionP0A6F3372 faldo:begin ?templateMotifSequenceMatchBeginP0A6F3373 .
?templateMotifSequenceMatchBeginP0A6F3373 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6F3368 ;
faldo:reference isoform:P0A6F3-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6F3374 edam:has_input signature:MF_00186 ;
rdf:type edam:operation_0300 .
?targetMotifMatch375 faldo:location ?targetMotifMatchRegionMatch376 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00186378 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6F3MF_00186369 .
?targetMotifMatchRegionMatch376 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00186377 .
?targetMotifMatchRegionMatchBeginMF_00186377 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00186370 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00186378 edam:has_input signature:MF_00186 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6F3MF_00186367, 1, (STRLEN(?templateMotifCigarP0A6F3MF_00186367) - STRLEN(REPLACE(?templateMotifCigarP0A6F3MF_00186367, CONCAT('^(?:-*[^-]){', STR(((136 - ?templateMotifSequenceMatchBeginPositionP0A6F3368) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1379) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6F3MF_00186369, 1, (STRLEN(?targetMotifMatchCigarP0A6F3MF_00186369) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F3MF_00186369, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1379), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6F3MF_00186369, 1, (STRLEN(?targetMotifMatchCigarP0A6F3MF_00186369) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F3MF_00186369, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1379), '}'), '')))), '[^-]', ''))) AS ?step2380) .
BIND(((?step2380 + ?targetMotifMatchRegionMatchBeginPositionMF_00186370) - 1) AS ?thisPositionOn94) .
BIND(?thisPositionOn94 AS ?thisPositionOn95) .
BIND(?this AS ?pfs2t381) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn94))) AS ?pfsb91) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn95))) AS ?pfse92) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn94, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_00186a90')) AS ?annotation90) .
BIND(?this AS ?pfs89) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch386 faldo:location ?templateMotifSequenceMatchRegionP0A6F3387 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6F3389 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6F3MF_00186382 .
?templateMotifSequenceMatchRegionP0A6F3387 faldo:begin ?templateMotifSequenceMatchBeginP0A6F3388 .
?templateMotifSequenceMatchBeginP0A6F3388 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6F3383 ;
faldo:reference isoform:P0A6F3-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6F3389 edam:has_input signature:MF_00186 ;
rdf:type edam:operation_0300 .
?targetMotifMatch390 faldo:location ?targetMotifMatchRegionMatch391 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00186393 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6F3MF_00186384 .
?targetMotifMatchRegionMatch391 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00186392 .
?targetMotifMatchRegionMatchBeginMF_00186392 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00186385 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00186393 edam:has_input signature:MF_00186 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6F3MF_00186382, 1, (STRLEN(?templateMotifCigarP0A6F3MF_00186382) - STRLEN(REPLACE(?templateMotifCigarP0A6F3MF_00186382, CONCAT('^(?:-*[^-]){', STR(((136 - ?templateMotifSequenceMatchBeginPositionP0A6F3383) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1394) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6F3MF_00186384, 1, (STRLEN(?targetMotifMatchCigarP0A6F3MF_00186384) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F3MF_00186384, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1394), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6F3MF_00186384, 1, (STRLEN(?targetMotifMatchCigarP0A6F3MF_00186384) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F3MF_00186384, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1394), '}'), '')))), '[^-]', ''))) AS ?step2395) .
BIND(((?step2395 + ?targetMotifMatchRegionMatchBeginPositionMF_00186385) - 1) AS ?thisPositionOn101) .
BIND(?thisPositionOn101 AS ?thisPositionOn102) .
BIND(?this AS ?pfs2t396) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn101))) AS ?pfsb98) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn102))) AS ?pfse99) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn101, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_00186a97')) AS ?annotation97) .
BIND(?this AS ?pfs96) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch401 faldo:location ?templateMotifSequenceMatchRegionP0A6F3402 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6F3404 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6F3MF_00186397 .
?templateMotifSequenceMatchRegionP0A6F3402 faldo:begin ?templateMotifSequenceMatchBeginP0A6F3403 .
?templateMotifSequenceMatchBeginP0A6F3403 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6F3398 ;
faldo:reference isoform:P0A6F3-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6F3404 edam:has_input signature:MF_00186 ;
rdf:type edam:operation_0300 .
?targetMotifMatch405 faldo:location ?targetMotifMatchRegionMatch406 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00186408 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6F3MF_00186399 .
?targetMotifMatchRegionMatch406 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00186407 .
?targetMotifMatchRegionMatchBeginMF_00186407 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00186400 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00186408 edam:has_input signature:MF_00186 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6F3MF_00186397, 1, (STRLEN(?templateMotifCigarP0A6F3MF_00186397) - STRLEN(REPLACE(?templateMotifCigarP0A6F3MF_00186397, CONCAT('^(?:-*[^-]){', STR(((246 - ?templateMotifSequenceMatchBeginPositionP0A6F3398) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1409) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6F3MF_00186399, 1, (STRLEN(?targetMotifMatchCigarP0A6F3MF_00186399) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F3MF_00186399, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1409), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6F3MF_00186399, 1, (STRLEN(?targetMotifMatchCigarP0A6F3MF_00186399) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F3MF_00186399, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1409), '}'), '')))), '[^-]', ''))) AS ?step2410) .
BIND(((?step2410 + ?targetMotifMatchRegionMatchBeginPositionMF_00186400) - 1) AS ?thisPositionOn108) .
BIND(?thisPositionOn108 AS ?thisPositionOn109) .
BIND(?this AS ?pfs2t411) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn108))) AS ?pfsb105) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn109))) AS ?pfse106) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn108, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00186a104')) AS ?annotation104) .
BIND(?this AS ?pfs103) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch416 faldo:location ?templateMotifSequenceMatchRegionP0A6F3417 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6F3419 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6F3MF_00186412 .
?templateMotifSequenceMatchRegionP0A6F3417 faldo:begin ?templateMotifSequenceMatchBeginP0A6F3418 .
?templateMotifSequenceMatchBeginP0A6F3418 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6F3413 ;
faldo:reference isoform:P0A6F3-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6F3419 edam:has_input signature:MF_00186 ;
rdf:type edam:operation_0300 .
?targetMotifMatch420 faldo:location ?targetMotifMatchRegionMatch421 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00186423 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6F3MF_00186414 .
?targetMotifMatchRegionMatch421 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00186422 .
?targetMotifMatchRegionMatchBeginMF_00186422 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00186415 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00186423 edam:has_input signature:MF_00186 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6F3MF_00186412, 1, (STRLEN(?templateMotifCigarP0A6F3MF_00186412) - STRLEN(REPLACE(?templateMotifCigarP0A6F3MF_00186412, CONCAT('^(?:-*[^-]){', STR(((246 - ?templateMotifSequenceMatchBeginPositionP0A6F3413) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1424) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6F3MF_00186414, 1, (STRLEN(?targetMotifMatchCigarP0A6F3MF_00186414) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F3MF_00186414, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1424), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6F3MF_00186414, 1, (STRLEN(?targetMotifMatchCigarP0A6F3MF_00186414) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F3MF_00186414, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1424), '}'), '')))), '[^-]', ''))) AS ?step2425) .
BIND(((?step2425 + ?targetMotifMatchRegionMatchBeginPositionMF_00186415) - 1) AS ?thisPositionOn115) .
BIND(?thisPositionOn115 AS ?thisPositionOn116) .
BIND(?this AS ?pfs2t426) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn115))) AS ?pfsb112) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn116))) AS ?pfse113) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn115, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00186a111')) AS ?annotation111) .
BIND(?this AS ?pfs110) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch431 faldo:location ?templateMotifSequenceMatchRegionP0A6F3432 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6F3434 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6F3MF_00186427 .
?templateMotifSequenceMatchRegionP0A6F3432 faldo:begin ?templateMotifSequenceMatchBeginP0A6F3433 .
?templateMotifSequenceMatchBeginP0A6F3433 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6F3428 ;
faldo:reference isoform:P0A6F3-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6F3434 edam:has_input signature:MF_00186 ;
rdf:type edam:operation_0300 .
?targetMotifMatch435 faldo:location ?targetMotifMatchRegionMatch436 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00186438 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6F3MF_00186429 .
?targetMotifMatchRegionMatch436 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00186437 .
?targetMotifMatchRegionMatchBeginMF_00186437 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00186430 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00186438 edam:has_input signature:MF_00186 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6F3MF_00186427, 1, (STRLEN(?templateMotifCigarP0A6F3MF_00186427) - STRLEN(REPLACE(?templateMotifCigarP0A6F3MF_00186427, CONCAT('^(?:-*[^-]){', STR(((247 - ?templateMotifSequenceMatchBeginPositionP0A6F3428) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1439) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6F3MF_00186429, 1, (STRLEN(?targetMotifMatchCigarP0A6F3MF_00186429) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F3MF_00186429, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1439), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6F3MF_00186429, 1, (STRLEN(?targetMotifMatchCigarP0A6F3MF_00186429) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F3MF_00186429, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1439), '}'), '')))), '[^-]', ''))) AS ?step2440) .
BIND(((?step2440 + ?targetMotifMatchRegionMatchBeginPositionMF_00186430) - 1) AS ?thisPositionOn122) .
BIND(?thisPositionOn122 AS ?thisPositionOn123) .
BIND(?this AS ?pfs2t441) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn122))) AS ?pfsb119) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn123))) AS ?pfse120) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn122, 1) = 'Q')) .
BIND(URI(CONCAT(STR(?this), '#MF_00186a118')) AS ?annotation118) .
BIND(?this AS ?pfs117) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch446 faldo:location ?templateMotifSequenceMatchRegionP0A6F3447 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6F3449 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6F3MF_00186442 .
?templateMotifSequenceMatchRegionP0A6F3447 faldo:begin ?templateMotifSequenceMatchBeginP0A6F3448 .
?templateMotifSequenceMatchBeginP0A6F3448 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6F3443 ;
faldo:reference isoform:P0A6F3-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6F3449 edam:has_input signature:MF_00186 ;
rdf:type edam:operation_0300 .
?targetMotifMatch450 faldo:location ?targetMotifMatchRegionMatch451 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00186453 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6F3MF_00186444 .
?targetMotifMatchRegionMatch451 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00186452 .
?targetMotifMatchRegionMatchBeginMF_00186452 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00186445 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00186453 edam:has_input signature:MF_00186 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6F3MF_00186442, 1, (STRLEN(?templateMotifCigarP0A6F3MF_00186442) - STRLEN(REPLACE(?templateMotifCigarP0A6F3MF_00186442, CONCAT('^(?:-*[^-]){', STR(((268 - ?templateMotifSequenceMatchBeginPositionP0A6F3443) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1454) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6F3MF_00186444, 1, (STRLEN(?targetMotifMatchCigarP0A6F3MF_00186444) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F3MF_00186444, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1454), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6F3MF_00186444, 1, (STRLEN(?targetMotifMatchCigarP0A6F3MF_00186444) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F3MF_00186444, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1454), '}'), '')))), '[^-]', ''))) AS ?step2455) .
BIND(((?step2455 + ?targetMotifMatchRegionMatchBeginPositionMF_00186445) - 1) AS ?thisPositionOn129) .
BIND(?thisPositionOn129 AS ?thisPositionOn130) .
BIND(?this AS ?pfs2t456) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn129))) AS ?pfsb126) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn130))) AS ?pfse127) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn129, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_00186a125')) AS ?annotation125) .
BIND(?this AS ?pfs124) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch461 faldo:location ?templateMotifSequenceMatchRegionP0A6F3462 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6F3464 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6F3MF_00186457 .
?templateMotifSequenceMatchRegionP0A6F3462 faldo:begin ?templateMotifSequenceMatchBeginP0A6F3463 .
?templateMotifSequenceMatchBeginP0A6F3463 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6F3458 ;
faldo:reference isoform:P0A6F3-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6F3464 edam:has_input signature:MF_00186 ;
rdf:type edam:operation_0300 .
?targetMotifMatch465 faldo:location ?targetMotifMatchRegionMatch466 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00186468 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6F3MF_00186459 .
?targetMotifMatchRegionMatch466 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00186467 .
?targetMotifMatchRegionMatchBeginMF_00186467 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00186460 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00186468 edam:has_input signature:MF_00186 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6F3MF_00186457, 1, (STRLEN(?templateMotifCigarP0A6F3MF_00186457) - STRLEN(REPLACE(?templateMotifCigarP0A6F3MF_00186457, CONCAT('^(?:-*[^-]){', STR(((268 - ?templateMotifSequenceMatchBeginPositionP0A6F3458) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1469) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6F3MF_00186459, 1, (STRLEN(?targetMotifMatchCigarP0A6F3MF_00186459) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F3MF_00186459, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1469), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6F3MF_00186459, 1, (STRLEN(?targetMotifMatchCigarP0A6F3MF_00186459) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F3MF_00186459, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1469), '}'), '')))), '[^-]', ''))) AS ?step2470) .
BIND(((?step2470 + ?targetMotifMatchRegionMatchBeginPositionMF_00186460) - 1) AS ?thisPositionOn136) .
BIND(?thisPositionOn136 AS ?thisPositionOn137) .
BIND(?this AS ?pfs2t471) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn136))) AS ?pfsb133) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn137))) AS ?pfse134) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn136, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_00186a132')) AS ?annotation132) .
BIND(?this AS ?pfs131) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch476 faldo:location ?templateMotifSequenceMatchRegionP0A6F3477 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6F3479 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6F3MF_00186472 .
?templateMotifSequenceMatchRegionP0A6F3477 faldo:begin ?templateMotifSequenceMatchBeginP0A6F3478 .
?templateMotifSequenceMatchBeginP0A6F3478 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6F3473 ;
faldo:reference isoform:P0A6F3-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6F3479 edam:has_input signature:MF_00186 ;
rdf:type edam:operation_0300 .
?targetMotifMatch480 faldo:location ?targetMotifMatchRegionMatch481 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00186483 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6F3MF_00186474 .
?targetMotifMatchRegionMatch481 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00186482 .
?targetMotifMatchRegionMatchBeginMF_00186482 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00186475 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00186483 edam:has_input signature:MF_00186 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6F3MF_00186472, 1, (STRLEN(?templateMotifCigarP0A6F3MF_00186472) - STRLEN(REPLACE(?templateMotifCigarP0A6F3MF_00186472, CONCAT('^(?:-*[^-]){', STR(((311 - ?templateMotifSequenceMatchBeginPositionP0A6F3473) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1484) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6F3MF_00186474, 1, (STRLEN(?targetMotifMatchCigarP0A6F3MF_00186474) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F3MF_00186474, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1484), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6F3MF_00186474, 1, (STRLEN(?targetMotifMatchCigarP0A6F3MF_00186474) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F3MF_00186474, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1484), '}'), '')))), '[^-]', ''))) AS ?step2485) .
BIND(((?step2485 + ?targetMotifMatchRegionMatchBeginPositionMF_00186475) - 1) AS ?thisPositionOn143) .
BIND(?thisPositionOn143 AS ?thisPositionOn144) .
BIND(?this AS ?pfs2t486) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn143))) AS ?pfsb140) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn144))) AS ?pfse141) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn143, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_00186a139')) AS ?annotation139) .
BIND(?this AS ?pfs138) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch491 faldo:location ?templateMotifSequenceMatchRegionP0A6F3492 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6F3494 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6F3MF_00186487 .
?templateMotifSequenceMatchRegionP0A6F3492 faldo:begin ?templateMotifSequenceMatchBeginP0A6F3493 .
?templateMotifSequenceMatchBeginP0A6F3493 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6F3488 ;
faldo:reference isoform:P0A6F3-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6F3494 edam:has_input signature:MF_00186 ;
rdf:type edam:operation_0300 .
?targetMotifMatch495 faldo:location ?targetMotifMatchRegionMatch496 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00186498 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6F3MF_00186489 .
?targetMotifMatchRegionMatch496 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00186497 .
?targetMotifMatchRegionMatchBeginMF_00186497 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00186490 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00186498 edam:has_input signature:MF_00186 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6F3MF_00186487, 1, (STRLEN(?templateMotifCigarP0A6F3MF_00186487) - STRLEN(REPLACE(?templateMotifCigarP0A6F3MF_00186487, CONCAT('^(?:-*[^-]){', STR(((311 - ?templateMotifSequenceMatchBeginPositionP0A6F3488) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1499) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6F3MF_00186489, 1, (STRLEN(?targetMotifMatchCigarP0A6F3MF_00186489) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F3MF_00186489, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1499), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6F3MF_00186489, 1, (STRLEN(?targetMotifMatchCigarP0A6F3MF_00186489) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F3MF_00186489, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1499), '}'), '')))), '[^-]', ''))) AS ?step2500) .
BIND(((?step2500 + ?targetMotifMatchRegionMatchBeginPositionMF_00186490) - 1) AS ?thisPositionOn150) .
BIND(?thisPositionOn150 AS ?thisPositionOn151) .
BIND(?this AS ?pfs2t501) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn150))) AS ?pfsb147) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn151))) AS ?pfse148) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn150, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_00186a146')) AS ?annotation146) .
BIND(?this AS ?pfs145) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch506 faldo:location ?templateMotifSequenceMatchRegionP0A6F3507 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6F3509 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6F3MF_00186502 .
?templateMotifSequenceMatchRegionP0A6F3507 faldo:begin ?templateMotifSequenceMatchBeginP0A6F3508 .
?templateMotifSequenceMatchBeginP0A6F3508 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6F3503 ;
faldo:reference isoform:P0A6F3-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6F3509 edam:has_input signature:MF_00186 ;
rdf:type edam:operation_0300 .
?targetMotifMatch510 faldo:location ?targetMotifMatchRegionMatch511 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00186513 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6F3MF_00186504 .
?targetMotifMatchRegionMatch511 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00186512 .
?targetMotifMatchRegionMatchBeginMF_00186512 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00186505 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00186513 edam:has_input signature:MF_00186 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6F3MF_00186502, 1, (STRLEN(?templateMotifCigarP0A6F3MF_00186502) - STRLEN(REPLACE(?templateMotifCigarP0A6F3MF_00186502, CONCAT('^(?:-*[^-]){', STR(((315 - ?templateMotifSequenceMatchBeginPositionP0A6F3503) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1514) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6F3MF_00186504, 1, (STRLEN(?targetMotifMatchCigarP0A6F3MF_00186504) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F3MF_00186504, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1514), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6F3MF_00186504, 1, (STRLEN(?targetMotifMatchCigarP0A6F3MF_00186504) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F3MF_00186504, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1514), '}'), '')))), '[^-]', ''))) AS ?step2515) .
BIND(((?step2515 + ?targetMotifMatchRegionMatchBeginPositionMF_00186505) - 1) AS ?thisPositionOn157) .
BIND(?thisPositionOn157 AS ?thisPositionOn158) .
BIND(?this AS ?pfs2t516) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn157))) AS ?pfsb154) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn158))) AS ?pfse155) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn157, 1) = 'Q')) .
BIND(URI(CONCAT(STR(?this), '#MF_00186a153')) AS ?annotation153) .
BIND(?this AS ?pfs152) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch521 faldo:location ?templateMotifSequenceMatchRegionP0A6F3522 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6F3524 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6F3MF_00186517 .
?templateMotifSequenceMatchRegionP0A6F3522 faldo:begin ?templateMotifSequenceMatchBeginP0A6F3523 .
?templateMotifSequenceMatchBeginP0A6F3523 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6F3518 ;
faldo:reference isoform:P0A6F3-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6F3524 edam:has_input signature:MF_00186 ;
rdf:type edam:operation_0300 .
?targetMotifMatch525 faldo:location ?targetMotifMatchRegionMatch526 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00186528 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6F3MF_00186519 .
?targetMotifMatchRegionMatch526 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00186527 .
?targetMotifMatchRegionMatchBeginMF_00186527 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00186520 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00186528 edam:has_input signature:MF_00186 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6F3MF_00186517, 1, (STRLEN(?templateMotifCigarP0A6F3MF_00186517) - STRLEN(REPLACE(?templateMotifCigarP0A6F3MF_00186517, CONCAT('^(?:-*[^-]){', STR(((412 - ?templateMotifSequenceMatchBeginPositionP0A6F3518) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1529) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6F3MF_00186519, 1, (STRLEN(?targetMotifMatchCigarP0A6F3MF_00186519) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F3MF_00186519, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1529), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6F3MF_00186519, 1, (STRLEN(?targetMotifMatchCigarP0A6F3MF_00186519) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F3MF_00186519, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1529), '}'), '')))), '[^-]', ''))) AS ?step2530) .
BIND(((?step2530 + ?targetMotifMatchRegionMatchBeginPositionMF_00186520) - 1) AS ?thisPositionOn164) .
BIND(?thisPositionOn164 AS ?thisPositionOn165) .
BIND(?this AS ?pfs2t531) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn164))) AS ?pfsb161) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn165))) AS ?pfse162) .
FILTER (REGEX('[GA]', SUBSTR(?thisSequenceValue, ?thisPositionOn164, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00186a160')) AS ?annotation160) .
BIND(?this AS ?pfs159) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch536 faldo:location ?templateMotifSequenceMatchRegionP0A6F3537 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6F3539 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6F3MF_00186532 .
?templateMotifSequenceMatchRegionP0A6F3537 faldo:begin ?templateMotifSequenceMatchBeginP0A6F3538 .
?templateMotifSequenceMatchBeginP0A6F3538 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6F3533 ;
faldo:reference isoform:P0A6F3-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6F3539 edam:has_input signature:MF_00186 ;
rdf:type edam:operation_0300 .
?targetMotifMatch540 faldo:location ?targetMotifMatchRegionMatch541 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00186543 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6F3MF_00186534 .
?targetMotifMatchRegionMatch541 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00186542 .
?targetMotifMatchRegionMatchBeginMF_00186542 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00186535 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00186543 edam:has_input signature:MF_00186 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6F3MF_00186532, 1, (STRLEN(?templateMotifCigarP0A6F3MF_00186532) - STRLEN(REPLACE(?templateMotifCigarP0A6F3MF_00186532, CONCAT('^(?:-*[^-]){', STR(((412 - ?templateMotifSequenceMatchBeginPositionP0A6F3533) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1544) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6F3MF_00186534, 1, (STRLEN(?targetMotifMatchCigarP0A6F3MF_00186534) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F3MF_00186534, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1544), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6F3MF_00186534, 1, (STRLEN(?targetMotifMatchCigarP0A6F3MF_00186534) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F3MF_00186534, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1544), '}'), '')))), '[^-]', ''))) AS ?step2545) .
BIND(((?step2545 + ?targetMotifMatchRegionMatchBeginPositionMF_00186535) - 1) AS ?thisPositionOn171) .
BIND(?thisPositionOn171 AS ?thisPositionOn172) .
BIND(?this AS ?pfs2t546) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn171))) AS ?pfsb168) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn172))) AS ?pfse169) .
FILTER (REGEX('[GA]', SUBSTR(?thisSequenceValue, ?thisPositionOn171, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00186a167')) AS ?annotation167) .
BIND(?this AS ?pfs166) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch551 faldo:location ?templateMotifSequenceMatchRegionP0A6F3552 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6F3554 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6F3MF_00186547 .
?templateMotifSequenceMatchRegionP0A6F3552 faldo:begin ?templateMotifSequenceMatchBeginP0A6F3553 .
?templateMotifSequenceMatchBeginP0A6F3553 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6F3548 ;
faldo:reference isoform:P0A6F3-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6F3554 edam:has_input signature:MF_00186 ;
rdf:type edam:operation_0300 .
?targetMotifMatch555 faldo:location ?targetMotifMatchRegionMatch556 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00186558 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6F3MF_00186549 .
?targetMotifMatchRegionMatch556 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00186557 .
?targetMotifMatchRegionMatchBeginMF_00186557 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00186550 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00186558 edam:has_input signature:MF_00186 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6F3MF_00186547, 1, (STRLEN(?templateMotifCigarP0A6F3MF_00186547) - STRLEN(REPLACE(?templateMotifCigarP0A6F3MF_00186547, CONCAT('^(?:-*[^-]){', STR(((416 - ?templateMotifSequenceMatchBeginPositionP0A6F3548) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1559) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6F3MF_00186549, 1, (STRLEN(?targetMotifMatchCigarP0A6F3MF_00186549) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F3MF_00186549, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1559), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6F3MF_00186549, 1, (STRLEN(?targetMotifMatchCigarP0A6F3MF_00186549) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F3MF_00186549, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1559), '}'), '')))), '[^-]', ''))) AS ?step2560) .
BIND(((?step2560 + ?targetMotifMatchRegionMatchBeginPositionMF_00186550) - 1) AS ?thisPositionOn178) .
BIND(?thisPositionOn178 AS ?thisPositionOn179) .
BIND(?this AS ?pfs2t561) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn178))) AS ?pfsb175) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn179))) AS ?pfse176) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn178, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_00186a174')) AS ?annotation174) .
BIND(?this AS ?pfs173) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch566 faldo:location ?templateMotifSequenceMatchRegionP0A6F3567 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6F3569 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6F3MF_00186562 .
?templateMotifSequenceMatchRegionP0A6F3567 faldo:begin ?templateMotifSequenceMatchBeginP0A6F3568 .
?templateMotifSequenceMatchBeginP0A6F3568 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6F3563 ;
faldo:reference isoform:P0A6F3-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6F3569 edam:has_input signature:MF_00186 ;
rdf:type edam:operation_0300 .
?targetMotifMatch570 faldo:location ?targetMotifMatchRegionMatch571 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00186573 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6F3MF_00186564 .
?targetMotifMatchRegionMatch571 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00186572 .
?targetMotifMatchRegionMatchBeginMF_00186572 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00186565 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00186573 edam:has_input signature:MF_00186 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6F3MF_00186562, 1, (STRLEN(?templateMotifCigarP0A6F3MF_00186562) - STRLEN(REPLACE(?templateMotifCigarP0A6F3MF_00186562, CONCAT('^(?:-*[^-]){', STR(((479 - ?templateMotifSequenceMatchBeginPositionP0A6F3563) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1574) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6F3MF_00186564, 1, (STRLEN(?targetMotifMatchCigarP0A6F3MF_00186564) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F3MF_00186564, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1574), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6F3MF_00186564, 1, (STRLEN(?targetMotifMatchCigarP0A6F3MF_00186564) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F3MF_00186564, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1574), '}'), '')))), '[^-]', ''))) AS ?step2575) .
BIND(((?step2575 + ?targetMotifMatchRegionMatchBeginPositionMF_00186565) - 1) AS ?thisPositionOn185) .
BIND(?thisPositionOn185 AS ?thisPositionOn186) .
BIND(?this AS ?pfs3t576) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn185))) AS ?pfsb182) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn186))) AS ?pfse183) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn185, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_00186a181')) AS ?annotation181) .
BIND(?this AS ?pfs180) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch581 faldo:location ?templateMotifSequenceMatchRegionP0A6F3582 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6F3584 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6F3MF_00186577 .
?templateMotifSequenceMatchRegionP0A6F3582 faldo:begin ?templateMotifSequenceMatchBeginP0A6F3583 .
?templateMotifSequenceMatchBeginP0A6F3583 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6F3578 ;
faldo:reference isoform:P0A6F3-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6F3584 edam:has_input signature:MF_00186 ;
rdf:type edam:operation_0300 .
?targetMotifMatch585 faldo:location ?targetMotifMatchRegionMatch586 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00186588 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6F3MF_00186579 .
?targetMotifMatchRegionMatch586 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00186587 .
?targetMotifMatchRegionMatchBeginMF_00186587 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00186580 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00186588 edam:has_input signature:MF_00186 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6F3MF_00186577, 1, (STRLEN(?templateMotifCigarP0A6F3MF_00186577) - STRLEN(REPLACE(?templateMotifCigarP0A6F3MF_00186577, CONCAT('^(?:-*[^-]){', STR(((235 - ?templateMotifSequenceMatchBeginPositionP0A6F3578) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1589) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6F3MF_00186579, 1, (STRLEN(?targetMotifMatchCigarP0A6F3MF_00186579) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F3MF_00186579, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1589), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6F3MF_00186579, 1, (STRLEN(?targetMotifMatchCigarP0A6F3MF_00186579) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F3MF_00186579, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1589), '}'), '')))), '[^-]', ''))) AS ?step2590) .
BIND(((?step2590 + ?targetMotifMatchRegionMatchBeginPositionMF_00186580) - 1) AS ?thisPositionOn192) .
BIND(?thisPositionOn192 AS ?thisPositionOn193) .
BIND(?this AS ?pfs3t591) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn192))) AS ?pfsb189) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn193))) AS ?pfse190) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn192, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_00186a188')) AS ?annotation188) .
BIND(?this AS ?pfs187) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch596 faldo:location ?templateMotifSequenceMatchRegionP0A6F3597 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6F3599 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6F3MF_00186592 .
?templateMotifSequenceMatchRegionP0A6F3597 faldo:begin ?templateMotifSequenceMatchBeginP0A6F3598 .
?templateMotifSequenceMatchBeginP0A6F3598 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6F3593 ;
faldo:reference isoform:P0A6F3-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6F3599 edam:has_input signature:MF_00186 ;
rdf:type edam:operation_0300 .
?targetMotifMatch600 faldo:location ?targetMotifMatchRegionMatch601 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00186603 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6F3MF_00186594 .
?targetMotifMatchRegionMatch601 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00186602 .
?targetMotifMatchRegionMatchBeginMF_00186602 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00186595 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00186603 edam:has_input signature:MF_00186 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6F3MF_00186592, 1, (STRLEN(?templateMotifCigarP0A6F3MF_00186592) - STRLEN(REPLACE(?templateMotifCigarP0A6F3MF_00186592, CONCAT('^(?:-*[^-]){', STR(((237 - ?templateMotifSequenceMatchBeginPositionP0A6F3593) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1604) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6F3MF_00186594, 1, (STRLEN(?targetMotifMatchCigarP0A6F3MF_00186594) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F3MF_00186594, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1604), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6F3MF_00186594, 1, (STRLEN(?targetMotifMatchCigarP0A6F3MF_00186594) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F3MF_00186594, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1604), '}'), '')))), '[^-]', ''))) AS ?step2605) .
BIND(((?step2605 + ?targetMotifMatchRegionMatchBeginPositionMF_00186595) - 1) AS ?thisPositionOn199) .
BIND(?thisPositionOn199 AS ?thisPositionOn200) .
BIND(?this AS ?pfs3t606) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn199))) AS ?pfsb196) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn200))) AS ?pfse197) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn199, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_00186a195')) AS ?annotation195) .
BIND(?this AS ?pfs194) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag607) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag607, ?UNBOUND_VARIABLE) AS ?case9) .
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:1239 .
BIND(?this AS ?case10) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(?this AS ?case11) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
VALUES ?supertaxon608 {taxon:2157 taxon:1239 taxon:91347}
?thisOrganism rdfs:subClassOf+ ?supertaxon608 .
})) .
BIND(?this AS ?case12) .
}
}
"xsd:string |
