| http://purl.uniprot.org/unirules/MF_01182#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:413877 up:source unirule:MF_01182 .
_:413878 up:source unirule:MF_01182 .
_:413879 up:source unirule:MF_01182 .
_:413880 up:source unirule:MF_01182 .
_:413881 up:source unirule:MF_01182 .
_:413882 up:source unirule:MF_01182 .
_:413883 up:source unirule:MF_01182 .
_:413884 up:source unirule:MF_01182 .
_:413885 up:source unirule:MF_01182 .
_:413886 up:source unirule:MF_01182 .
_:413887 up:source unirule:MF_01182 .
_:413888 up:source unirule:MF_01182 .
_:413889 up:source unirule:MF_01182 .
_:413890 up:source unirule:MF_01182 .
_:413891 up:source unirule:MF_01182 .
_:413892 up:source unirule:MF_01182 .
_:413893 up:source unirule:MF_01182 .
_:413894 up:source unirule:MF_01182 .
_:413895 up:source unirule:MF_01182 .
_:413896 up:source unirule:MF_01182 .
_:413897 up:source unirule:MF_01182 .
_:413898 up:source unirule:MF_01182 .
_:413899 up:source unirule:MF_01182 .
_:413900 up:source unirule:MF_01182 .
_:413901 up:source unirule:MF_01182 .
_:413902 up:source unirule:MF_01182 .
_:413903 up:source unirule:MF_01182 .
_:413904 up:source unirule:MF_01182 .
_:413905 up:source unirule:MF_01182 .
_:413906 up:source unirule:MF_01182 .
_:413907 up:source unirule:MF_01182 .
_:413908 up:source unirule:MF_01182 .
_:413909 up:source unirule:MF_01182 .
_:413910 up:source unirule:MF_01182 .
_:413911 up:source unirule:MF_01182 .
_:413912 up:source unirule:MF_01182 .
_:413913 up:source unirule:MF_01182 .
_:413914 up:source unirule:MF_01182 .
_:413915 up:source unirule:MF_01182 .
_:413916 up:source unirule:MF_01182 .
_:413917 up:source unirule:MF_01182 .
_:413918 up:source unirule:MF_01182 .
_:413919 up:source unirule:MF_01182 .
_:413920 up:source unirule:MF_01182 .
_:413921 up:source unirule:MF_01182 .
_:413922 up:source unirule:MF_01182 .
_:413923 up:source unirule:MF_01182 .
_:413924 up:source unirule:MF_01182 .
_:413925 up:source unirule:MF_01182 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ,
?annotation9 ;
up:classifiedWith GO:0042128 ,
GO:0042279 ,
GO:0042597 ,
keyword:249 ,
keyword:560 ,
keyword:574 ,
keyword:732 ,
keyword:813 ;
up:precursor "true"^^xsd:boolean ;
up:recommendedName ?name0 .
?name0 up:ecName '1.7.2.2' ;
up:fullName 'Cytochrome c-552' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Ammonia-forming cytochrome c nitrite reductase' ;
up:shortName 'Cytochrome c nitrite reductase' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'nrfA' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 a up:Pathway_Annotation ;
rdfs:comment 'Nitrogen metabolism; nitrate reduction (assimilation).' .
?annotation7 a up:Subcellular_Location_Annotation .
?annotation7li8 up:cellularComponent .
?annotation9 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the cytochrome c-552 family.' .
?case10 up:classifiedWith GO:0005509 ,
keyword:106 .
?case11 up:classifiedWith GO:0005506 ,
keyword:408 ,
keyword:479 .
?case12 up:classifiedWith keyword:349 .
?pfs13 up:annotation ?annotation14 ,
?annotation20 .
?annotation14 faldo:begin ?pfsb15 ;
faldo:end ?pfse16 ;
up:ligand ?ligand17 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'covalent' .
?pfsb15 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfse16 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?ligand17 rdfs:subClassOf chebi:61717 .
?annotation20 faldo:begin ?pfsb21 ;
faldo:end ?pfse22 ;
up:ligand ?ligand23 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'covalent' .
?pfsb21 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfse22 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?ligand23 rdfs:subClassOf chebi:61717 .
?pfs26 up:annotation ?annotation27 ,
?annotation33 ,
?annotation39 ,
?annotation45 ,
?annotation51 ,
?annotation57 ,
?annotation63 ,
?annotation69 ,
?annotation75 .
?annotation27 faldo:begin ?pfsb28 ;
faldo:end ?pfse29 ;
up:ligand ?ligand30 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'axial binding residue' .
?pfsb28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?pfse29 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?ligand30 up:ligandPart ?ligand30 ;
rdfs:subClassOf chebi:18248 ,
chebi:61717 .
?annotation33 faldo:begin ?pfsb34 ;
faldo:end ?pfse35 ;
up:ligand ?ligand36 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'axial binding residue' .
?pfsb34 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?pfse35 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?ligand36 up:ligandPart ?ligand36 ;
rdfs:subClassOf chebi:18248 ,
chebi:61717 .
?annotation39 faldo:begin ?pfsb40 ;
faldo:end ?pfse41 ;
up:ligand ?ligand42 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'axial binding residue' .
?pfsb40 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?pfse41 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?ligand42 up:ligandPart ?ligand42 ;
rdfs:subClassOf chebi:18248 ,
chebi:61717 .
?annotation45 faldo:begin ?pfsb46 ;
faldo:end ?pfse47 ;
up:ligand ?ligand48 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'axial binding residue' .
?pfsb46 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?pfse47 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?ligand48 up:ligandPart ?ligand48 ;
rdfs:subClassOf chebi:18248 ,
chebi:61717 .
?annotation51 faldo:begin ?pfsb52 ;
faldo:end ?pfse53 ;
up:ligand ?ligand54 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'axial binding residue' .
?pfsb52 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
?pfse53 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?ligand54 up:ligandPart ?ligand54 ;
rdfs:subClassOf chebi:18248 ,
chebi:61717 .
?annotation57 faldo:begin ?pfsb58 ;
faldo:end ?pfse59 ;
up:ligand ?ligand60 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'axial binding residue' .
?pfsb58 faldo:position ?thisPositionOn61 ;
rdf:type faldo:ExactPosition .
?pfse59 faldo:position ?thisPositionOn62 ;
rdf:type faldo:ExactPosition .
?ligand60 up:ligandPart ?ligand60 ;
rdfs:subClassOf chebi:18248 ,
chebi:61717 .
?annotation63 faldo:begin ?pfsb64 ;
faldo:end ?pfse65 ;
up:ligand ?ligand66 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'axial binding residue' .
?pfsb64 faldo:position ?thisPositionOn67 ;
rdf:type faldo:ExactPosition .
?pfse65 faldo:position ?thisPositionOn68 ;
rdf:type faldo:ExactPosition .
?ligand66 up:ligandPart ?ligand66 ;
rdfs:subClassOf chebi:18248 ,
chebi:61717 .
?annotation69 faldo:begin ?pfsb70 ;
faldo:end ?pfse71 ;
up:ligand ?ligand72 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'axial binding residue' .
?pfsb70 faldo:position ?thisPositionOn73 ;
rdf:type faldo:ExactPosition .
?pfse71 faldo:position ?thisPositionOn74 ;
rdf:type faldo:ExactPosition .
?ligand72 up:ligandPart ?ligand72 ;
rdfs:subClassOf chebi:18248 ,
chebi:61717 .
?annotation75 faldo:begin ?pfsb76 ;
faldo:end ?pfse77 ;
up:ligand ?ligand78 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'axial binding residue' .
?pfsb76 faldo:position ?thisPositionOn79 ;
rdf:type faldo:ExactPosition .
?pfse77 faldo:position ?thisPositionOn80 ;
rdf:type faldo:ExactPosition .
?ligand78 up:ligandPart ?ligand78 ;
rdfs:subClassOf chebi:18248 ,
chebi:61717 .
?pfs81 up:annotation ?annotation82 ,
?annotation88 .
?annotation82 faldo:begin ?pfsb83 ;
faldo:end ?pfse84 ;
up:ligand ?ligand85 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'covalent' .
?pfsb83 faldo:position ?thisPositionOn86 ;
rdf:type faldo:ExactPosition .
?pfse84 faldo:position ?thisPositionOn87 ;
rdf:type faldo:ExactPosition .
?ligand85 rdfs:subClassOf chebi:61717 .
?annotation88 faldo:begin ?pfsb89 ;
faldo:end ?pfse90 ;
up:ligand ?ligand91 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'covalent' .
?pfsb89 faldo:position ?thisPositionOn92 ;
rdf:type faldo:ExactPosition .
?pfse90 faldo:position ?thisPositionOn93 ;
rdf:type faldo:ExactPosition .
?ligand91 rdfs:subClassOf chebi:61717 .
?pfs94 up:annotation ?annotation95 ,
?annotation101 .
?annotation95 faldo:begin ?pfsb96 ;
faldo:end ?pfse97 ;
up:ligand ?ligand98 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'covalent' .
?pfsb96 faldo:position ?thisPositionOn99 ;
rdf:type faldo:ExactPosition .
?pfse97 faldo:position ?thisPositionOn100 ;
rdf:type faldo:ExactPosition .
?ligand98 rdfs:subClassOf chebi:61717 .
?annotation101 faldo:begin ?pfsb102 ;
faldo:end ?pfse103 ;
up:ligand ?ligand104 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'covalent' .
?pfsb102 faldo:position ?thisPositionOn105 ;
rdf:type faldo:ExactPosition .
?pfse103 faldo:position ?thisPositionOn106 ;
rdf:type faldo:ExactPosition .
?ligand104 rdfs:subClassOf chebi:61717 .
?pfs107 up:annotation ?annotation108 ,
?annotation114 .
?annotation108 faldo:begin ?pfsb109 ;
faldo:end ?pfse110 ;
up:ligand ?ligand111 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'covalent' .
?pfsb109 faldo:position ?thisPositionOn112 ;
rdf:type faldo:ExactPosition .
?pfse110 faldo:position ?thisPositionOn113 ;
rdf:type faldo:ExactPosition .
?ligand111 rdfs:subClassOf chebi:61717 .
?annotation114 faldo:begin ?pfsb115 ;
faldo:end ?pfse116 ;
up:ligand ?ligand117 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'covalent' .
?pfsb115 faldo:position ?thisPositionOn118 ;
rdf:type faldo:ExactPosition .
?pfse116 faldo:position ?thisPositionOn119 ;
rdf:type faldo:ExactPosition .
?ligand117 rdfs:subClassOf chebi:61717 .
?pfs120 up:annotation ?annotation121 ,
?annotation127 ,
?annotation133 ,
?annotation139 .
?annotation121 faldo:begin ?pfsb122 ;
faldo:end ?pfse123 ;
up:ligand ?ligand124 ;
rdf:type up:Binding_Site_Annotation .
?pfsb122 faldo:position ?thisPositionOn125 ;
rdf:type faldo:ExactPosition .
?pfse123 faldo:position ?thisPositionOn126 ;
rdf:type faldo:ExactPosition .
?ligand124 rdfs:subClassOf chebi:29108 .
?annotation127 faldo:begin ?pfsb128 ;
faldo:end ?pfse129 ;
up:ligand ?ligand130 ;
rdf:type up:Binding_Site_Annotation .
?pfsb128 faldo:position ?thisPositionOn131 ;
rdf:type faldo:ExactPosition .
?pfse129 faldo:position ?thisPositionOn132 ;
rdf:type faldo:ExactPosition .
?ligand130 rdfs:subClassOf chebi:29108 .
?annotation133 faldo:begin ?pfsb134 ;
faldo:end ?pfse135 ;
up:ligand ?ligand136 ;
rdf:type up:Binding_Site_Annotation .
?pfsb134 faldo:position ?thisPositionOn137 ;
rdf:type faldo:ExactPosition .
?pfse135 faldo:position ?thisPositionOn138 ;
rdf:type faldo:ExactPosition .
?ligand136 rdfs:subClassOf chebi:29108 .
?annotation139 faldo:begin ?pfsb140 ;
faldo:end ?pfse141 ;
up:ligand ?ligand142 ;
rdf:type up:Binding_Site_Annotation .
?pfsb140 faldo:position ?thisPositionOn143 ;
rdf:type faldo:ExactPosition .
?pfse141 faldo:position ?thisPositionOn144 ;
rdf:type faldo:ExactPosition .
?ligand142 rdfs:subClassOf chebi:29108 .
?pfs145 up:annotation ?annotation146 ,
?annotation152 .
?annotation146 faldo:begin ?pfsb147 ;
faldo:end ?pfse148 ;
up:ligand ?ligand149 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'covalent' .
?pfsb147 faldo:position ?thisPositionOn150 ;
rdf:type faldo:ExactPosition .
?pfse148 faldo:position ?thisPositionOn151 ;
rdf:type faldo:ExactPosition .
?ligand149 rdfs:subClassOf chebi:61717 .
?annotation152 faldo:begin ?pfsb153 ;
faldo:end ?pfse154 ;
up:ligand ?ligand155 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'covalent' .
?pfsb153 faldo:position ?thisPositionOn156 ;
rdf:type faldo:ExactPosition .
?pfse154 faldo:position ?thisPositionOn157 ;
rdf:type faldo:ExactPosition .
?ligand155 rdfs:subClassOf chebi:61717 .
?pfs158 up:annotation ?annotation159 .
?annotation159 faldo:begin ?pfsb160 ;
faldo:end ?pfse161 ;
up:ligand ?ligand162 ;
rdf:type up:Binding_Site_Annotation .
?pfsb160 faldo:position ?thisPositionOn164 ;
rdf:type faldo:ExactPosition .
?pfse161 faldo:position ?thisPositionOn165 ;
rdf:type faldo:ExactPosition .
?ligand162 rdfs:subClassOf ?molecule163 .
?molecule163 rdfs:label 'substrate' .
?pfs166 up:annotation ?annotation167 .
?annotation167 faldo:begin ?pfsb168 ;
faldo:end ?pfse169 ;
up:ligand ?ligand170 ;
rdf:type up:Binding_Site_Annotation .
?pfsb168 faldo:position ?thisPositionOn172 ;
rdf:type faldo:ExactPosition .
?pfse169 faldo:position ?thisPositionOn173 ;
rdf:type faldo:ExactPosition .
?ligand170 rdfs:subClassOf ?molecule171 .
?molecule171 rdfs:label 'substrate' .
?sam174 up:classifiedWith keyword:732 .
?signal175 faldo:begin ?signalb176 ;
faldo:end ?signale177 .
?signalb176 faldo:position ?signalbp178 .
?signale177 faldo:position ?signalep179 .
?keyword180 up:range ?signal175 .
_:413926 a rdf:Statement ;
up:attribution _:413877 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:413927 a rdf:Statement ;
up:attribution _:413878 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:413928 a rdf:Statement ;
up:attribution _:413879 ;
rdf:subject ?this ;
rdf:predicate up:precursor ;
rdf:object "true"^^xsd:boolean .
_:413929 a rdf:Statement ;
up:attribution _:413880 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:413930 a rdf:Statement ;
up:attribution _:413881 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:413931 a rdf:Statement ;
up:attribution _:413882 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:413932 a rdf:Statement ;
up:attribution _:413883 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:413933 a rdf:Statement ;
up:attribution _:413884 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:413934 a rdf:Statement ;
up:attribution _:413885 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:413935 a rdf:Statement ;
up:attribution _:413886 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:249 .
_:413936 a rdf:Statement ;
up:attribution _:413887 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:560 .
_:413937 a rdf:Statement ;
up:attribution _:413888 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:574 .
_:413938 a rdf:Statement ;
up:attribution _:413889 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:732 .
_:413939 a rdf:Statement ;
up:attribution _:413890 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:813 .
_:413940 a rdf:Statement ;
up:attribution _:413891 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0042279 .
_:413941 a rdf:Statement ;
up:attribution _:413892 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0042128 .
_:413942 a rdf:Statement ;
up:attribution _:413893 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0042597 .
_:413943 a rdf:Statement ;
up:attribution _:413894 ;
rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:106 .
_:413944 a rdf:Statement ;
up:attribution _:413895 ;
rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005509 .
_:413945 a rdf:Statement ;
up:attribution _:413896 ;
rdf:subject ?case11 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:408 .
_:413946 a rdf:Statement ;
up:attribution _:413897 ;
rdf:subject ?case11 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:413947 a rdf:Statement ;
up:attribution _:413898 ;
rdf:subject ?case11 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005506 .
_:413948 a rdf:Statement ;
up:attribution _:413899 ;
rdf:subject ?case12 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:349 .
_:413949 a rdf:Statement ;
up:source unirule:MF_01182 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:413950 a rdf:Statement ;
up:attribution _:413900 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:413951 a rdf:Statement ;
up:source unirule:MF_01182 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:413952 a rdf:Statement ;
up:attribution _:413901 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:413953 a rdf:Statement ;
up:source unirule:MF_01182 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:413954 a rdf:Statement ;
up:attribution _:413902 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:413955 a rdf:Statement ;
up:source unirule:MF_01182 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:413956 a rdf:Statement ;
up:attribution _:413903 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:413957 a rdf:Statement ;
up:source unirule:MF_01182 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:413958 a rdf:Statement ;
up:attribution _:413904 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:413959 a rdf:Statement ;
up:source unirule:MF_01182 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:413960 a rdf:Statement ;
up:attribution _:413905 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:413961 a rdf:Statement ;
up:source unirule:MF_01182 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation51 .
_:413962 a rdf:Statement ;
up:attribution _:413906 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation51 .
_:413963 a rdf:Statement ;
up:source unirule:MF_01182 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation57 .
_:413964 a rdf:Statement ;
up:attribution _:413907 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation57 .
_:413965 a rdf:Statement ;
up:source unirule:MF_01182 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation63 .
_:413966 a rdf:Statement ;
up:attribution _:413908 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation63 .
_:413967 a rdf:Statement ;
up:source unirule:MF_01182 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation69 .
_:413968 a rdf:Statement ;
up:attribution _:413909 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation69 .
_:413969 a rdf:Statement ;
up:source unirule:MF_01182 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation75 .
_:413970 a rdf:Statement ;
up:attribution _:413910 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation75 .
_:413971 a rdf:Statement ;
up:source unirule:MF_01182 ;
rdf:subject ?pfs81 ;
rdf:predicate up:annotation ;
rdf:object ?annotation82 .
_:413972 a rdf:Statement ;
up:attribution _:413911 ;
rdf:subject ?pfs81 ;
rdf:predicate up:annotation ;
rdf:object ?annotation82 .
_:413973 a rdf:Statement ;
up:source unirule:MF_01182 ;
rdf:subject ?pfs81 ;
rdf:predicate up:annotation ;
rdf:object ?annotation88 .
_:413974 a rdf:Statement ;
up:attribution _:413912 ;
rdf:subject ?pfs81 ;
rdf:predicate up:annotation ;
rdf:object ?annotation88 .
_:413975 a rdf:Statement ;
up:source unirule:MF_01182 ;
rdf:subject ?pfs94 ;
rdf:predicate up:annotation ;
rdf:object ?annotation95 .
_:413976 a rdf:Statement ;
up:attribution _:413913 ;
rdf:subject ?pfs94 ;
rdf:predicate up:annotation ;
rdf:object ?annotation95 .
_:413977 a rdf:Statement ;
up:source unirule:MF_01182 ;
rdf:subject ?pfs94 ;
rdf:predicate up:annotation ;
rdf:object ?annotation101 .
_:413978 a rdf:Statement ;
up:attribution _:413914 ;
rdf:subject ?pfs94 ;
rdf:predicate up:annotation ;
rdf:object ?annotation101 .
_:413979 a rdf:Statement ;
up:source unirule:MF_01182 ;
rdf:subject ?pfs107 ;
rdf:predicate up:annotation ;
rdf:object ?annotation108 .
_:413980 a rdf:Statement ;
up:attribution _:413915 ;
rdf:subject ?pfs107 ;
rdf:predicate up:annotation ;
rdf:object ?annotation108 .
_:413981 a rdf:Statement ;
up:source unirule:MF_01182 ;
rdf:subject ?pfs107 ;
rdf:predicate up:annotation ;
rdf:object ?annotation114 .
_:413982 a rdf:Statement ;
up:attribution _:413916 ;
rdf:subject ?pfs107 ;
rdf:predicate up:annotation ;
rdf:object ?annotation114 .
_:413983 a rdf:Statement ;
up:source unirule:MF_01182 ;
rdf:subject ?pfs120 ;
rdf:predicate up:annotation ;
rdf:object ?annotation121 .
_:413984 a rdf:Statement ;
up:attribution _:413917 ;
rdf:subject ?pfs120 ;
rdf:predicate up:annotation ;
rdf:object ?annotation121 .
_:413985 a rdf:Statement ;
up:source unirule:MF_01182 ;
rdf:subject ?pfs120 ;
rdf:predicate up:annotation ;
rdf:object ?annotation127 .
_:413986 a rdf:Statement ;
up:attribution _:413918 ;
rdf:subject ?pfs120 ;
rdf:predicate up:annotation ;
rdf:object ?annotation127 .
_:413987 a rdf:Statement ;
up:source unirule:MF_01182 ;
rdf:subject ?pfs120 ;
rdf:predicate up:annotation ;
rdf:object ?annotation133 .
_:413988 a rdf:Statement ;
up:attribution _:413919 ;
rdf:subject ?pfs120 ;
rdf:predicate up:annotation ;
rdf:object ?annotation133 .
_:413989 a rdf:Statement ;
up:source unirule:MF_01182 ;
rdf:subject ?pfs120 ;
rdf:predicate up:annotation ;
rdf:object ?annotation139 .
_:413990 a rdf:Statement ;
up:attribution _:413920 ;
rdf:subject ?pfs120 ;
rdf:predicate up:annotation ;
rdf:object ?annotation139 .
_:413991 a rdf:Statement ;
up:source unirule:MF_01182 ;
rdf:subject ?pfs145 ;
rdf:predicate up:annotation ;
rdf:object ?annotation146 .
_:413992 a rdf:Statement ;
up:attribution _:413921 ;
rdf:subject ?pfs145 ;
rdf:predicate up:annotation ;
rdf:object ?annotation146 .
_:413993 a rdf:Statement ;
up:source unirule:MF_01182 ;
rdf:subject ?pfs145 ;
rdf:predicate up:annotation ;
rdf:object ?annotation152 .
_:413994 a rdf:Statement ;
up:attribution _:413922 ;
rdf:subject ?pfs145 ;
rdf:predicate up:annotation ;
rdf:object ?annotation152 .
_:413995 a rdf:Statement ;
up:source unirule:MF_01182 ;
rdf:subject ?pfs158 ;
rdf:predicate up:annotation ;
rdf:object ?annotation159 .
_:413996 a rdf:Statement ;
up:attribution _:413923 ;
rdf:subject ?pfs158 ;
rdf:predicate up:annotation ;
rdf:object ?annotation159 .
_:413997 a rdf:Statement ;
up:source unirule:MF_01182 ;
rdf:subject ?pfs166 ;
rdf:predicate up:annotation ;
rdf:object ?annotation167 .
_:413998 a rdf:Statement ;
up:attribution _:413924 ;
rdf:subject ?pfs166 ;
rdf:predicate up:annotation ;
rdf:object ?annotation167 .
_:413999 a rdf:Statement ;
up:attribution _:413925 ;
rdf:subject ?sam174 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:732 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01182
#Rule MF_01182 Created by:? on:2006-11-24 Modified by:Edouard de Castro on:2024-09-03
VALUES ?supertaxon181 {taxon:976 taxon:1224}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01182 .
?thisOrganism rdfs:subClassOf+ ?supertaxon181 .
BIND(URI(CONCAT(STR(?this), '#MF_01182a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01182a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01182a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01182a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01182a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01182a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01182a9')) AS ?annotation9) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch186 faldo:location ?templateMotifSequenceMatchRegionP0ABK9187 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ABK9189 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ABK9MF_01182182 .
?templateMotifSequenceMatchRegionP0ABK9187 faldo:begin ?templateMotifSequenceMatchBeginP0ABK9188 .
?templateMotifSequenceMatchBeginP0ABK9188 faldo:position ?templateMotifSequenceMatchBeginPositionP0ABK9183 ;
faldo:reference isoform:P0ABK9-1 .
?templateMotifSequenceProfileAlignmentOperationP0ABK9189 edam:has_input signature:MF_01182 ;
rdf:type edam:operation_0300 .
?targetMotifMatch190 faldo:location ?targetMotifMatchRegionMatch191 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01182193 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ABK9MF_01182184 .
?targetMotifMatchRegionMatch191 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01182192 .
?targetMotifMatchRegionMatchBeginMF_01182192 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01182185 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01182193 edam:has_input signature:MF_01182 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_7) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABK9MF_01182182, 1, (STRLEN(?templateMotifCigarP0ABK9MF_01182182) - STRLEN(REPLACE(?templateMotifCigarP0ABK9MF_01182182, CONCAT('^(?:-*[^-]){', STR(((314 - ?templateMotifSequenceMatchBeginPositionP0ABK9183) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1194) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABK9MF_01182184, 1, (STRLEN(?targetMotifMatchCigarP0ABK9MF_01182184) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABK9MF_01182184, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1194), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABK9MF_01182184, 1, (STRLEN(?targetMotifMatchCigarP0ABK9MF_01182184) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABK9MF_01182184, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1194), '}'), '')))), '[^-]', ''))) AS ?step2195) .
BIND(((?step2195 + ?targetMotifMatchRegionMatchBeginPositionMF_01182185) - 1) AS ?thisPositionOn18) .
BIND(?thisPositionOn18 AS ?thisPositionOn19) .
BIND(?this AS ?pfs1t196) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb15) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse16) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn18, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABK9MF_01182182, 1, (STRLEN(?templateMotifCigarP0ABK9MF_01182182) - STRLEN(REPLACE(?templateMotifCigarP0ABK9MF_01182182, CONCAT('^(?:-*[^-]){', STR(((317 - ?templateMotifSequenceMatchBeginPositionP0ABK9183) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1197) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABK9MF_01182184, 1, (STRLEN(?targetMotifMatchCigarP0ABK9MF_01182184) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABK9MF_01182184, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1197), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABK9MF_01182184, 1, (STRLEN(?targetMotifMatchCigarP0ABK9MF_01182184) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABK9MF_01182184, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1197), '}'), '')))), '[^-]', ''))) AS ?step2198) .
BIND(((?step2198 + ?targetMotifMatchRegionMatchBeginPositionMF_01182185) - 1) AS ?thisPositionOn24) .
BIND(?thisPositionOn24 AS ?thisPositionOn25) .
BIND(?this AS ?pfs1t199) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse22) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn24, 1) = 'C')) .
BIND(?this AS ?pfs13) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch204 faldo:location ?templateMotifSequenceMatchRegionP0ABK9205 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ABK9207 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ABK9MF_01182200 .
?templateMotifSequenceMatchRegionP0ABK9205 faldo:begin ?templateMotifSequenceMatchBeginP0ABK9206 .
?templateMotifSequenceMatchBeginP0ABK9206 faldo:position ?templateMotifSequenceMatchBeginPositionP0ABK9201 ;
faldo:reference isoform:P0ABK9-1 .
?templateMotifSequenceProfileAlignmentOperationP0ABK9207 edam:has_input signature:MF_01182 ;
rdf:type edam:operation_0300 .
?targetMotifMatch208 faldo:location ?targetMotifMatchRegionMatch209 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01182211 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ABK9MF_01182202 .
?targetMotifMatchRegionMatch209 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01182210 .
?targetMotifMatchRegionMatchBeginMF_01182210 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01182203 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01182211 edam:has_input signature:MF_01182 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABK9MF_01182200, 1, (STRLEN(?templateMotifCigarP0ABK9MF_01182200) - STRLEN(REPLACE(?templateMotifCigarP0ABK9MF_01182200, CONCAT('^(?:-*[^-]){', STR(((94 - ?templateMotifSequenceMatchBeginPositionP0ABK9201) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1212) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABK9MF_01182202, 1, (STRLEN(?targetMotifMatchCigarP0ABK9MF_01182202) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABK9MF_01182202, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1212), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABK9MF_01182202, 1, (STRLEN(?targetMotifMatchCigarP0ABK9MF_01182202) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABK9MF_01182202, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1212), '}'), '')))), '[^-]', ''))) AS ?step2213) .
BIND(((?step2213 + ?targetMotifMatchRegionMatchBeginPositionMF_01182203) - 1) AS ?thisPositionOn31) .
BIND(?thisPositionOn31 AS ?thisPositionOn32) .
BIND(?this AS ?pfs2t214) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb28) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse29) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn31, 1) = 'H')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABK9MF_01182200, 1, (STRLEN(?templateMotifCigarP0ABK9MF_01182200) - STRLEN(REPLACE(?templateMotifCigarP0ABK9MF_01182200, CONCAT('^(?:-*[^-]){', STR(((126 - ?templateMotifSequenceMatchBeginPositionP0ABK9201) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1215) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABK9MF_01182202, 1, (STRLEN(?targetMotifMatchCigarP0ABK9MF_01182202) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABK9MF_01182202, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1215), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABK9MF_01182202, 1, (STRLEN(?targetMotifMatchCigarP0ABK9MF_01182202) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABK9MF_01182202, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1215), '}'), '')))), '[^-]', ''))) AS ?step2216) .
BIND(((?step2216 + ?targetMotifMatchRegionMatchBeginPositionMF_01182203) - 1) AS ?thisPositionOn37) .
BIND(?thisPositionOn37 AS ?thisPositionOn38) .
BIND(?this AS ?pfs2t217) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfsb34) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfse35) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn37, 1) = 'K')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABK9MF_01182200, 1, (STRLEN(?templateMotifCigarP0ABK9MF_01182200) - STRLEN(REPLACE(?templateMotifCigarP0ABK9MF_01182200, CONCAT('^(?:-*[^-]){', STR(((164 - ?templateMotifSequenceMatchBeginPositionP0ABK9201) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1218) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABK9MF_01182202, 1, (STRLEN(?targetMotifMatchCigarP0ABK9MF_01182202) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABK9MF_01182202, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1218), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABK9MF_01182202, 1, (STRLEN(?targetMotifMatchCigarP0ABK9MF_01182202) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABK9MF_01182202, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1218), '}'), '')))), '[^-]', ''))) AS ?step2219) .
BIND(((?step2219 + ?targetMotifMatchRegionMatchBeginPositionMF_01182203) - 1) AS ?thisPositionOn43) .
BIND(?thisPositionOn43 AS ?thisPositionOn44) .
BIND(?this AS ?pfs2t220) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfsb40) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfse41) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn43, 1) = 'H')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABK9MF_01182200, 1, (STRLEN(?templateMotifCigarP0ABK9MF_01182200) - STRLEN(REPLACE(?templateMotifCigarP0ABK9MF_01182200, CONCAT('^(?:-*[^-]){', STR(((213 - ?templateMotifSequenceMatchBeginPositionP0ABK9201) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1221) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABK9MF_01182202, 1, (STRLEN(?targetMotifMatchCigarP0ABK9MF_01182202) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABK9MF_01182202, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1221), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABK9MF_01182202, 1, (STRLEN(?targetMotifMatchCigarP0ABK9MF_01182202) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABK9MF_01182202, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1221), '}'), '')))), '[^-]', ''))) AS ?step2222) .
BIND(((?step2222 + ?targetMotifMatchRegionMatchBeginPositionMF_01182203) - 1) AS ?thisPositionOn49) .
BIND(?thisPositionOn49 AS ?thisPositionOn50) .
BIND(?this AS ?pfs2t223) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfsb46) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfse47) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn49, 1) = 'H')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABK9MF_01182200, 1, (STRLEN(?templateMotifCigarP0ABK9MF_01182200) - STRLEN(REPLACE(?templateMotifCigarP0ABK9MF_01182200, CONCAT('^(?:-*[^-]){', STR(((275 - ?templateMotifSequenceMatchBeginPositionP0ABK9201) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1224) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABK9MF_01182202, 1, (STRLEN(?targetMotifMatchCigarP0ABK9MF_01182202) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABK9MF_01182202, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1224), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABK9MF_01182202, 1, (STRLEN(?targetMotifMatchCigarP0ABK9MF_01182202) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABK9MF_01182202, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1224), '}'), '')))), '[^-]', ''))) AS ?step2225) .
BIND(((?step2225 + ?targetMotifMatchRegionMatchBeginPositionMF_01182203) - 1) AS ?thisPositionOn55) .
BIND(?thisPositionOn55 AS ?thisPositionOn56) .
BIND(?this AS ?pfs2t226) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfsb52) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfse53) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn55, 1) = 'H')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABK9MF_01182200, 1, (STRLEN(?templateMotifCigarP0ABK9MF_01182200) - STRLEN(REPLACE(?templateMotifCigarP0ABK9MF_01182200, CONCAT('^(?:-*[^-]){', STR(((286 - ?templateMotifSequenceMatchBeginPositionP0ABK9201) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1227) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABK9MF_01182202, 1, (STRLEN(?targetMotifMatchCigarP0ABK9MF_01182202) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABK9MF_01182202, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1227), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABK9MF_01182202, 1, (STRLEN(?targetMotifMatchCigarP0ABK9MF_01182202) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABK9MF_01182202, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1227), '}'), '')))), '[^-]', ''))) AS ?step2228) .
BIND(((?step2228 + ?targetMotifMatchRegionMatchBeginPositionMF_01182203) - 1) AS ?thisPositionOn61) .
BIND(?thisPositionOn61 AS ?thisPositionOn62) .
BIND(?this AS ?pfs2t229) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfsb58) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfse59) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn61, 1) = 'H')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABK9MF_01182200, 1, (STRLEN(?templateMotifCigarP0ABK9MF_01182200) - STRLEN(REPLACE(?templateMotifCigarP0ABK9MF_01182200, CONCAT('^(?:-*[^-]){', STR(((301 - ?templateMotifSequenceMatchBeginPositionP0ABK9201) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1230) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABK9MF_01182202, 1, (STRLEN(?targetMotifMatchCigarP0ABK9MF_01182202) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABK9MF_01182202, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1230), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABK9MF_01182202, 1, (STRLEN(?targetMotifMatchCigarP0ABK9MF_01182202) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABK9MF_01182202, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1230), '}'), '')))), '[^-]', ''))) AS ?step2231) .
BIND(((?step2231 + ?targetMotifMatchRegionMatchBeginPositionMF_01182203) - 1) AS ?thisPositionOn67) .
BIND(?thisPositionOn67 AS ?thisPositionOn68) .
BIND(?this AS ?pfs2t232) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfsb64) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn68))) AS ?pfse65) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn67, 1) = 'H')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABK9MF_01182200, 1, (STRLEN(?templateMotifCigarP0ABK9MF_01182200) - STRLEN(REPLACE(?templateMotifCigarP0ABK9MF_01182200, CONCAT('^(?:-*[^-]){', STR(((318 - ?templateMotifSequenceMatchBeginPositionP0ABK9201) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1233) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABK9MF_01182202, 1, (STRLEN(?targetMotifMatchCigarP0ABK9MF_01182202) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABK9MF_01182202, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1233), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABK9MF_01182202, 1, (STRLEN(?targetMotifMatchCigarP0ABK9MF_01182202) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABK9MF_01182202, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1233), '}'), '')))), '[^-]', ''))) AS ?step2234) .
BIND(((?step2234 + ?targetMotifMatchRegionMatchBeginPositionMF_01182203) - 1) AS ?thisPositionOn73) .
BIND(?thisPositionOn73 AS ?thisPositionOn74) .
BIND(?this AS ?pfs2t235) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfsb70) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn74))) AS ?pfse71) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn73, 1) = 'H')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABK9MF_01182200, 1, (STRLEN(?templateMotifCigarP0ABK9MF_01182200) - STRLEN(REPLACE(?templateMotifCigarP0ABK9MF_01182200, CONCAT('^(?:-*[^-]){', STR(((393 - ?templateMotifSequenceMatchBeginPositionP0ABK9201) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1236) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABK9MF_01182202, 1, (STRLEN(?targetMotifMatchCigarP0ABK9MF_01182202) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABK9MF_01182202, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1236), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABK9MF_01182202, 1, (STRLEN(?targetMotifMatchCigarP0ABK9MF_01182202) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABK9MF_01182202, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1236), '}'), '')))), '[^-]', ''))) AS ?step2237) .
BIND(((?step2237 + ?targetMotifMatchRegionMatchBeginPositionMF_01182203) - 1) AS ?thisPositionOn79) .
BIND(?thisPositionOn79 AS ?thisPositionOn80) .
BIND(?this AS ?pfs2t238) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn79))) AS ?pfsb76) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn80))) AS ?pfse77) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn79, 1) = 'H')) .
BIND(?this AS ?pfs26) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch243 faldo:location ?templateMotifSequenceMatchRegionP0ABK9244 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ABK9246 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ABK9MF_01182239 .
?templateMotifSequenceMatchRegionP0ABK9244 faldo:begin ?templateMotifSequenceMatchBeginP0ABK9245 .
?templateMotifSequenceMatchBeginP0ABK9245 faldo:position ?templateMotifSequenceMatchBeginPositionP0ABK9240 ;
faldo:reference isoform:P0ABK9-1 .
?templateMotifSequenceProfileAlignmentOperationP0ABK9246 edam:has_input signature:MF_01182 ;
rdf:type edam:operation_0300 .
?targetMotifMatch247 faldo:location ?targetMotifMatchRegionMatch248 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01182250 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ABK9MF_01182241 .
?targetMotifMatchRegionMatch248 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01182249 .
?targetMotifMatchRegionMatchBeginMF_01182249 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01182242 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01182250 edam:has_input signature:MF_01182 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_5) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABK9MF_01182239, 1, (STRLEN(?templateMotifCigarP0ABK9MF_01182239) - STRLEN(REPLACE(?templateMotifCigarP0ABK9MF_01182239, CONCAT('^(?:-*[^-]){', STR(((209 - ?templateMotifSequenceMatchBeginPositionP0ABK9240) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1251) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABK9MF_01182241, 1, (STRLEN(?targetMotifMatchCigarP0ABK9MF_01182241) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABK9MF_01182241, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1251), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABK9MF_01182241, 1, (STRLEN(?targetMotifMatchCigarP0ABK9MF_01182241) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABK9MF_01182241, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1251), '}'), '')))), '[^-]', ''))) AS ?step2252) .
BIND(((?step2252 + ?targetMotifMatchRegionMatchBeginPositionMF_01182242) - 1) AS ?thisPositionOn86) .
BIND(?thisPositionOn86 AS ?thisPositionOn87) .
BIND(?this AS ?pfs3t253) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn86))) AS ?pfsb83) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn87))) AS ?pfse84) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn86, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABK9MF_01182239, 1, (STRLEN(?templateMotifCigarP0ABK9MF_01182239) - STRLEN(REPLACE(?templateMotifCigarP0ABK9MF_01182239, CONCAT('^(?:-*[^-]){', STR(((212 - ?templateMotifSequenceMatchBeginPositionP0ABK9240) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1254) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABK9MF_01182241, 1, (STRLEN(?targetMotifMatchCigarP0ABK9MF_01182241) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABK9MF_01182241, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1254), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABK9MF_01182241, 1, (STRLEN(?targetMotifMatchCigarP0ABK9MF_01182241) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABK9MF_01182241, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1254), '}'), '')))), '[^-]', ''))) AS ?step2255) .
BIND(((?step2255 + ?targetMotifMatchRegionMatchBeginPositionMF_01182242) - 1) AS ?thisPositionOn92) .
BIND(?thisPositionOn92 AS ?thisPositionOn93) .
BIND(?this AS ?pfs3t256) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn92))) AS ?pfsb89) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn93))) AS ?pfse90) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn92, 1) = 'C')) .
BIND(?this AS ?pfs81) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch261 faldo:location ?templateMotifSequenceMatchRegionP0ABK9262 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ABK9264 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ABK9MF_01182257 .
?templateMotifSequenceMatchRegionP0ABK9262 faldo:begin ?templateMotifSequenceMatchBeginP0ABK9263 .
?templateMotifSequenceMatchBeginP0ABK9263 faldo:position ?templateMotifSequenceMatchBeginPositionP0ABK9258 ;
faldo:reference isoform:P0ABK9-1 .
?templateMotifSequenceProfileAlignmentOperationP0ABK9264 edam:has_input signature:MF_01182 ;
rdf:type edam:operation_0300 .
?targetMotifMatch265 faldo:location ?targetMotifMatchRegionMatch266 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01182268 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ABK9MF_01182259 .
?targetMotifMatchRegionMatch266 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01182267 .
?targetMotifMatchRegionMatchBeginMF_01182267 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01182260 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01182268 edam:has_input signature:MF_01182 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_3) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABK9MF_01182257, 1, (STRLEN(?templateMotifCigarP0ABK9MF_01182257) - STRLEN(REPLACE(?templateMotifCigarP0ABK9MF_01182257, CONCAT('^(?:-*[^-]){', STR(((122 - ?templateMotifSequenceMatchBeginPositionP0ABK9258) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1269) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABK9MF_01182259, 1, (STRLEN(?targetMotifMatchCigarP0ABK9MF_01182259) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABK9MF_01182259, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1269), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABK9MF_01182259, 1, (STRLEN(?targetMotifMatchCigarP0ABK9MF_01182259) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABK9MF_01182259, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1269), '}'), '')))), '[^-]', ''))) AS ?step2270) .
BIND(((?step2270 + ?targetMotifMatchRegionMatchBeginPositionMF_01182260) - 1) AS ?thisPositionOn99) .
BIND(?thisPositionOn99 AS ?thisPositionOn100) .
BIND(?this AS ?pfs4t271) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn99))) AS ?pfsb96) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn100))) AS ?pfse97) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn99, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABK9MF_01182257, 1, (STRLEN(?templateMotifCigarP0ABK9MF_01182257) - STRLEN(REPLACE(?templateMotifCigarP0ABK9MF_01182257, CONCAT('^(?:-*[^-]){', STR(((125 - ?templateMotifSequenceMatchBeginPositionP0ABK9258) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1272) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABK9MF_01182259, 1, (STRLEN(?targetMotifMatchCigarP0ABK9MF_01182259) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABK9MF_01182259, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1272), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABK9MF_01182259, 1, (STRLEN(?targetMotifMatchCigarP0ABK9MF_01182259) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABK9MF_01182259, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1272), '}'), '')))), '[^-]', ''))) AS ?step2273) .
BIND(((?step2273 + ?targetMotifMatchRegionMatchBeginPositionMF_01182260) - 1) AS ?thisPositionOn105) .
BIND(?thisPositionOn105 AS ?thisPositionOn106) .
BIND(?this AS ?pfs4t274) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn105))) AS ?pfsb102) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn106))) AS ?pfse103) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn105, 1) = 'C')) .
BIND(?this AS ?pfs94) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch279 faldo:location ?templateMotifSequenceMatchRegionP0ABK9280 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ABK9282 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ABK9MF_01182275 .
?templateMotifSequenceMatchRegionP0ABK9280 faldo:begin ?templateMotifSequenceMatchBeginP0ABK9281 .
?templateMotifSequenceMatchBeginP0ABK9281 faldo:position ?templateMotifSequenceMatchBeginPositionP0ABK9276 ;
faldo:reference isoform:P0ABK9-1 .
?templateMotifSequenceProfileAlignmentOperationP0ABK9282 edam:has_input signature:MF_01182 ;
rdf:type edam:operation_0300 .
?targetMotifMatch283 faldo:location ?targetMotifMatchRegionMatch284 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01182286 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ABK9MF_01182277 .
?targetMotifMatchRegionMatch284 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01182285 .
?targetMotifMatchRegionMatchBeginMF_01182285 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01182278 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01182286 edam:has_input signature:MF_01182 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_4) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABK9MF_01182275, 1, (STRLEN(?templateMotifCigarP0ABK9MF_01182275) - STRLEN(REPLACE(?templateMotifCigarP0ABK9MF_01182275, CONCAT('^(?:-*[^-]){', STR(((160 - ?templateMotifSequenceMatchBeginPositionP0ABK9276) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1287) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABK9MF_01182277, 1, (STRLEN(?targetMotifMatchCigarP0ABK9MF_01182277) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABK9MF_01182277, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1287), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABK9MF_01182277, 1, (STRLEN(?targetMotifMatchCigarP0ABK9MF_01182277) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABK9MF_01182277, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1287), '}'), '')))), '[^-]', ''))) AS ?step2288) .
BIND(((?step2288 + ?targetMotifMatchRegionMatchBeginPositionMF_01182278) - 1) AS ?thisPositionOn112) .
BIND(?thisPositionOn112 AS ?thisPositionOn113) .
BIND(?this AS ?pfs5t289) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn112))) AS ?pfsb109) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn113))) AS ?pfse110) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn112, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABK9MF_01182275, 1, (STRLEN(?templateMotifCigarP0ABK9MF_01182275) - STRLEN(REPLACE(?templateMotifCigarP0ABK9MF_01182275, CONCAT('^(?:-*[^-]){', STR(((163 - ?templateMotifSequenceMatchBeginPositionP0ABK9276) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1290) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABK9MF_01182277, 1, (STRLEN(?targetMotifMatchCigarP0ABK9MF_01182277) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABK9MF_01182277, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1290), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABK9MF_01182277, 1, (STRLEN(?targetMotifMatchCigarP0ABK9MF_01182277) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABK9MF_01182277, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1290), '}'), '')))), '[^-]', ''))) AS ?step2291) .
BIND(((?step2291 + ?targetMotifMatchRegionMatchBeginPositionMF_01182278) - 1) AS ?thisPositionOn118) .
BIND(?thisPositionOn118 AS ?thisPositionOn119) .
BIND(?this AS ?pfs5t292) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn118))) AS ?pfsb115) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn119))) AS ?pfse116) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn118, 1) = 'C')) .
BIND(?this AS ?pfs107) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch297 faldo:location ?templateMotifSequenceMatchRegionP0ABK9298 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ABK9300 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ABK9MF_01182293 .
?templateMotifSequenceMatchRegionP0ABK9298 faldo:begin ?templateMotifSequenceMatchBeginP0ABK9299 .
?templateMotifSequenceMatchBeginP0ABK9299 faldo:position ?templateMotifSequenceMatchBeginPositionP0ABK9294 ;
faldo:reference isoform:P0ABK9-1 .
?templateMotifSequenceProfileAlignmentOperationP0ABK9300 edam:has_input signature:MF_01182 ;
rdf:type edam:operation_0300 .
?targetMotifMatch301 faldo:location ?targetMotifMatchRegionMatch302 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01182304 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ABK9MF_01182295 .
?targetMotifMatchRegionMatch302 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01182303 .
?targetMotifMatchRegionMatchBeginMF_01182303 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01182296 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01182304 edam:has_input signature:MF_01182 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_2) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABK9MF_01182293, 1, (STRLEN(?templateMotifCigarP0ABK9MF_01182293) - STRLEN(REPLACE(?templateMotifCigarP0ABK9MF_01182293, CONCAT('^(?:-*[^-]){', STR(((215 - ?templateMotifSequenceMatchBeginPositionP0ABK9294) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1305) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABK9MF_01182295, 1, (STRLEN(?targetMotifMatchCigarP0ABK9MF_01182295) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABK9MF_01182295, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1305), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABK9MF_01182295, 1, (STRLEN(?targetMotifMatchCigarP0ABK9MF_01182295) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABK9MF_01182295, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1305), '}'), '')))), '[^-]', ''))) AS ?step2306) .
BIND(((?step2306 + ?targetMotifMatchRegionMatchBeginPositionMF_01182296) - 1) AS ?thisPositionOn125) .
BIND(?thisPositionOn125 AS ?thisPositionOn126) .
BIND(?this AS ?pfs6t307) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn125))) AS ?pfsb122) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn126))) AS ?pfse123) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn125, 1) = 'E')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABK9MF_01182293, 1, (STRLEN(?templateMotifCigarP0ABK9MF_01182293) - STRLEN(REPLACE(?templateMotifCigarP0ABK9MF_01182293, CONCAT('^(?:-*[^-]){', STR(((216 - ?templateMotifSequenceMatchBeginPositionP0ABK9294) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1308) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABK9MF_01182295, 1, (STRLEN(?targetMotifMatchCigarP0ABK9MF_01182295) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABK9MF_01182295, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1308), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABK9MF_01182295, 1, (STRLEN(?targetMotifMatchCigarP0ABK9MF_01182295) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABK9MF_01182295, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1308), '}'), '')))), '[^-]', ''))) AS ?step2309) .
BIND(((?step2309 + ?targetMotifMatchRegionMatchBeginPositionMF_01182296) - 1) AS ?thisPositionOn131) .
BIND(?thisPositionOn131 AS ?thisPositionOn132) .
BIND(?this AS ?pfs6t310) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn131))) AS ?pfsb128) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn132))) AS ?pfse129) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn131, 1) = 'Y')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABK9MF_01182293, 1, (STRLEN(?templateMotifCigarP0ABK9MF_01182293) - STRLEN(REPLACE(?templateMotifCigarP0ABK9MF_01182293, CONCAT('^(?:-*[^-]){', STR(((261 - ?templateMotifSequenceMatchBeginPositionP0ABK9294) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1311) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABK9MF_01182295, 1, (STRLEN(?targetMotifMatchCigarP0ABK9MF_01182295) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABK9MF_01182295, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1311), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABK9MF_01182295, 1, (STRLEN(?targetMotifMatchCigarP0ABK9MF_01182295) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABK9MF_01182295, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1311), '}'), '')))), '[^-]', ''))) AS ?step2312) .
BIND(((?step2312 + ?targetMotifMatchRegionMatchBeginPositionMF_01182296) - 1) AS ?thisPositionOn137) .
BIND(?thisPositionOn137 AS ?thisPositionOn138) .
BIND(?this AS ?pfs6t313) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn137))) AS ?pfsb134) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn138))) AS ?pfse135) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn137, 1) = 'K')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABK9MF_01182293, 1, (STRLEN(?templateMotifCigarP0ABK9MF_01182293) - STRLEN(REPLACE(?templateMotifCigarP0ABK9MF_01182293, CONCAT('^(?:-*[^-]){', STR(((263 - ?templateMotifSequenceMatchBeginPositionP0ABK9294) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1314) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABK9MF_01182295, 1, (STRLEN(?targetMotifMatchCigarP0ABK9MF_01182295) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABK9MF_01182295, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1314), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABK9MF_01182295, 1, (STRLEN(?targetMotifMatchCigarP0ABK9MF_01182295) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABK9MF_01182295, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1314), '}'), '')))), '[^-]', ''))) AS ?step2315) .
BIND(((?step2315 + ?targetMotifMatchRegionMatchBeginPositionMF_01182296) - 1) AS ?thisPositionOn143) .
BIND(?thisPositionOn143 AS ?thisPositionOn144) .
BIND(?this AS ?pfs6t316) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn143))) AS ?pfsb140) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn144))) AS ?pfse141) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn143, 1) = 'Q')) .
BIND(?this AS ?pfs120) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch321 faldo:location ?templateMotifSequenceMatchRegionP0ABK9322 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ABK9324 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ABK9MF_01182317 .
?templateMotifSequenceMatchRegionP0ABK9322 faldo:begin ?templateMotifSequenceMatchBeginP0ABK9323 .
?templateMotifSequenceMatchBeginP0ABK9323 faldo:position ?templateMotifSequenceMatchBeginPositionP0ABK9318 ;
faldo:reference isoform:P0ABK9-1 .
?templateMotifSequenceProfileAlignmentOperationP0ABK9324 edam:has_input signature:MF_01182 ;
rdf:type edam:operation_0300 .
?targetMotifMatch325 faldo:location ?targetMotifMatchRegionMatch326 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01182328 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ABK9MF_01182319 .
?targetMotifMatchRegionMatch326 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01182327 .
?targetMotifMatchRegionMatchBeginMF_01182327 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01182320 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01182328 edam:has_input signature:MF_01182 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_6) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABK9MF_01182317, 1, (STRLEN(?templateMotifCigarP0ABK9MF_01182317) - STRLEN(REPLACE(?templateMotifCigarP0ABK9MF_01182317, CONCAT('^(?:-*[^-]){', STR(((282 - ?templateMotifSequenceMatchBeginPositionP0ABK9318) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1329) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABK9MF_01182319, 1, (STRLEN(?targetMotifMatchCigarP0ABK9MF_01182319) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABK9MF_01182319, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1329), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABK9MF_01182319, 1, (STRLEN(?targetMotifMatchCigarP0ABK9MF_01182319) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABK9MF_01182319, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1329), '}'), '')))), '[^-]', ''))) AS ?step2330) .
BIND(((?step2330 + ?targetMotifMatchRegionMatchBeginPositionMF_01182320) - 1) AS ?thisPositionOn150) .
BIND(?thisPositionOn150 AS ?thisPositionOn151) .
BIND(?this AS ?pfs7t331) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn150))) AS ?pfsb147) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn151))) AS ?pfse148) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn150, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABK9MF_01182317, 1, (STRLEN(?templateMotifCigarP0ABK9MF_01182317) - STRLEN(REPLACE(?templateMotifCigarP0ABK9MF_01182317, CONCAT('^(?:-*[^-]){', STR(((285 - ?templateMotifSequenceMatchBeginPositionP0ABK9318) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1332) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABK9MF_01182319, 1, (STRLEN(?targetMotifMatchCigarP0ABK9MF_01182319) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABK9MF_01182319, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1332), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABK9MF_01182319, 1, (STRLEN(?targetMotifMatchCigarP0ABK9MF_01182319) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABK9MF_01182319, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1332), '}'), '')))), '[^-]', ''))) AS ?step2333) .
BIND(((?step2333 + ?targetMotifMatchRegionMatchBeginPositionMF_01182320) - 1) AS ?thisPositionOn156) .
BIND(?thisPositionOn156 AS ?thisPositionOn157) .
BIND(?this AS ?pfs7t334) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn156))) AS ?pfsb153) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn157))) AS ?pfse154) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn156, 1) = 'C')) .
BIND(?this AS ?pfs145) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch339 faldo:location ?templateMotifSequenceMatchRegionP0ABK9340 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ABK9342 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ABK9MF_01182335 .
?templateMotifSequenceMatchRegionP0ABK9340 faldo:begin ?templateMotifSequenceMatchBeginP0ABK9341 .
?templateMotifSequenceMatchBeginP0ABK9341 faldo:position ?templateMotifSequenceMatchBeginPositionP0ABK9336 ;
faldo:reference isoform:P0ABK9-1 .
?templateMotifSequenceProfileAlignmentOperationP0ABK9342 edam:has_input signature:MF_01182 ;
rdf:type edam:operation_0300 .
?targetMotifMatch343 faldo:location ?targetMotifMatchRegionMatch344 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01182346 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ABK9MF_01182337 .
?targetMotifMatchRegionMatch344 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01182345 .
?targetMotifMatchRegionMatchBeginMF_01182345 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01182338 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01182346 edam:has_input signature:MF_01182 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABK9MF_01182335, 1, (STRLEN(?templateMotifCigarP0ABK9MF_01182335) - STRLEN(REPLACE(?templateMotifCigarP0ABK9MF_01182335, CONCAT('^(?:-*[^-]){', STR(((216 - ?templateMotifSequenceMatchBeginPositionP0ABK9336) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1347) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABK9MF_01182337, 1, (STRLEN(?targetMotifMatchCigarP0ABK9MF_01182337) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABK9MF_01182337, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1347), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABK9MF_01182337, 1, (STRLEN(?targetMotifMatchCigarP0ABK9MF_01182337) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABK9MF_01182337, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1347), '}'), '')))), '[^-]', ''))) AS ?step2348) .
BIND(((?step2348 + ?targetMotifMatchRegionMatchBeginPositionMF_01182338) - 1) AS ?thisPositionOn164) .
BIND(?thisPositionOn164 AS ?thisPositionOn165) .
BIND(?this AS ?pfs8t349) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn164))) AS ?pfsb160) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn165))) AS ?pfse161) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn164, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_01182a159')) AS ?annotation159) .
BIND(?this AS ?pfs158) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch354 faldo:location ?templateMotifSequenceMatchRegionP0ABK9355 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ABK9357 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ABK9MF_01182350 .
?templateMotifSequenceMatchRegionP0ABK9355 faldo:begin ?templateMotifSequenceMatchBeginP0ABK9356 .
?templateMotifSequenceMatchBeginP0ABK9356 faldo:position ?templateMotifSequenceMatchBeginPositionP0ABK9351 ;
faldo:reference isoform:P0ABK9-1 .
?templateMotifSequenceProfileAlignmentOperationP0ABK9357 edam:has_input signature:MF_01182 ;
rdf:type edam:operation_0300 .
?targetMotifMatch358 faldo:location ?targetMotifMatchRegionMatch359 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01182361 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ABK9MF_01182352 .
?targetMotifMatchRegionMatch359 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01182360 .
?targetMotifMatchRegionMatchBeginMF_01182360 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01182353 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01182361 edam:has_input signature:MF_01182 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABK9MF_01182350, 1, (STRLEN(?templateMotifCigarP0ABK9MF_01182350) - STRLEN(REPLACE(?templateMotifCigarP0ABK9MF_01182350, CONCAT('^(?:-*[^-]){', STR(((264 - ?templateMotifSequenceMatchBeginPositionP0ABK9351) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1362) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABK9MF_01182352, 1, (STRLEN(?targetMotifMatchCigarP0ABK9MF_01182352) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABK9MF_01182352, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1362), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABK9MF_01182352, 1, (STRLEN(?targetMotifMatchCigarP0ABK9MF_01182352) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABK9MF_01182352, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1362), '}'), '')))), '[^-]', ''))) AS ?step2363) .
BIND(((?step2363 + ?targetMotifMatchRegionMatchBeginPositionMF_01182353) - 1) AS ?thisPositionOn172) .
BIND(?thisPositionOn172 AS ?thisPositionOn173) .
BIND(?this AS ?pfs8t364) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn172))) AS ?pfsb168) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn173))) AS ?pfse169) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn172, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01182a167')) AS ?annotation167) .
BIND(?this AS ?pfs166) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag365) .
}
BIND(IF(BOUND(?tagFTGRP_2), ?caseWithTag365, ?UNBOUND_VARIABLE) AS ?case10) .
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag366) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag366, ?UNBOUND_VARIABLE) AS ?case11) .
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag367) .
}
BIND(IF((BOUND(?tagFTGRP_3) || BOUND(?tagFTGRP_4) || BOUND(?tagFTGRP_5) || BOUND(?tagFTGRP_6) || BOUND(?tagFTGRP_7)), ?caseWithTag367, ?UNBOUND_VARIABLE) AS ?case12) .
OPTIONAL {
?this up:annotation ?samsignal368 ;
up:sequence ?thisSequence .
?samsignal368 up:range ?samsignalr369 ;
rdf:type up:Signal_Peptide_Annotation .
?samsignalr369 faldo:begin ?samsignalb370 ;
faldo:end ?samsignale371 .
?samsignalb370 faldo:position ?samsignalbp372 ;
faldo:reference ?thisSequence .
?samsignale371 faldo:position ?samsignalep373 ;
faldo:reference ?thisSequence .
BIND(?this AS ?sam174) .
}
BIND(URI(CONCAT(STR(?this), '#MF_01182a180')) AS ?keyword180) .
}
"xsd:string |
