| http://purl.uniprot.org/unirules/MF_01631#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:592814 up:source unirule:MF_01631 .
_:592815 up:ecName '2.7.7.23' ;
up:fullName 'UDP-N-acetylglucosamine pyrophosphorylase' ;
rdf:type up:Structured_Name .
_:592816 up:fullName 'N-acetylglucosamine-1-phosphate uridyltransferase' ;
rdf:type up:Structured_Name .
_:592817 up:source unirule:MF_01631 .
_:592818 up:ecName '2.3.1.157' ;
up:fullName 'Glucosamine-1-phosphate N-acetyltransferase' ;
rdf:type up:Structured_Name .
_:592819 up:source unirule:MF_01631 .
_:592820 up:source unirule:MF_01631 .
_:592821 up:source unirule:MF_01631 .
_:592822 up:source unirule:MF_01631 .
_:592823 up:source unirule:MF_01631 .
_:592824 up:source unirule:MF_01631 .
_:592825 up:source unirule:MF_01631 .
_:592826 up:source unirule:MF_01631 .
_:592827 up:source unirule:MF_01631 .
_:592828 up:source unirule:MF_01631 .
_:592829 up:source unirule:MF_01631 .
_:592830 up:source unirule:MF_01631 .
_:592831 up:source unirule:MF_01631 .
_:592832 up:source unirule:MF_01631 .
_:592833 up:source unirule:MF_01631 .
_:592834 up:source unirule:MF_01631 .
_:592835 up:source unirule:MF_01631 .
_:592836 up:source unirule:MF_01631 .
_:592837 up:source unirule:MF_01631 .
_:592838 up:source unirule:MF_01631 .
_:592839 up:source unirule:MF_01631 .
_:592840 up:source unirule:MF_01631 .
_:592841 up:source unirule:MF_01631 .
_:592842 up:source unirule:MF_01631 .
_:592843 up:source unirule:MF_01631 .
_:592844 up:source unirule:MF_01631 .
_:592845 up:source unirule:MF_01631 .
_:592846 up:source unirule:MF_01631 .
_:592847 up:source unirule:MF_01631 .
_:592848 up:source unirule:MF_01631 .
_:592849 up:source unirule:MF_01631 .
_:592850 up:source unirule:MF_01631 .
_:592851 up:source unirule:MF_01631 .
_:592852 up:source unirule:MF_01631 .
_:592853 up:source unirule:MF_01631 .
_:592854 up:source unirule:MF_01631 .
_:592855 up:source unirule:MF_01631 .
_:592856 up:source unirule:MF_01631 .
_:592857 up:source unirule:MF_01631 .
_:592858 up:source unirule:MF_01631 .
_:592859 up:source unirule:MF_01631 .
_:592860 up:source unirule:MF_01631 .
_:592861 up:source unirule:MF_01631 .
_:592862 up:source unirule:MF_01631 .
_:592863 up:source unirule:MF_01631 .
_:592864 up:source unirule:MF_01631 .
_:592865 up:source unirule:MF_01631 .
_:592866 up:source unirule:MF_01631 .
_:592867 up:source unirule:MF_01631 .
_:592868 up:source unirule:MF_01631 .
_:592869 up:source unirule:MF_01631 .
_:592870 up:source unirule:MF_01631 .
_:592871 up:source unirule:MF_01631 .
_:592872 up:source unirule:MF_01631 .
_:592873 up:source unirule:MF_01631 .
?this up:annotation ?annotation4 ,
?annotation5 ,
?annotation7 ,
?annotation9 ,
?annotation10 ,
?annotation11 ,
?annotation12 ,
?annotation13 ,
?annotation14 ,
?annotation16 ,
?annotation17 ;
up:classifiedWith GO:0000287 ,
GO:0000902 ,
GO:0003977 ,
GO:0005737 ,
GO:0009245 ,
GO:0009252 ,
GO:0019134 ,
keyword:12 ,
keyword:133 ,
keyword:460 ,
keyword:479 ,
keyword:511 ,
keyword:548 ,
keyword:573 ,
keyword:677 ,
keyword:808 ,
keyword:961 ,
keyword:963 ;
up:domain ?namedpart1 ,
?namedpart2 ;
up:recommendedName ?name0 .
?name0 up:fullName 'Bifunctional protein GlmU' ;
rdf:type up:Structured_Name .
?namedpart1 up:alternativeName _:592816 ;
up:recommendedName _:592815 .
?namedpart2 up:recommendedName _:592818 .
?gene3 skos:prefLabel 'glmU' .
?annotation4 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP-GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5-monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain.' .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity ;
up:enzymeClass .
?annotation7 up:activity ?activity8 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity8 up:catalyticActivity ;
up:enzymeClass .
?annotation9 up:cofactor chebi:18420 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 1 Mg(2+) ion per subunit.' .
?annotation10 a up:Pathway_Annotation ;
rdfs:comment 'Nucleotide-sugar biosynthesis; UDP-N-acetyl-alpha-D-glucosamine biosynthesis; N-acetyl-alpha-D-glucosamine 1-phosphate from alpha-D-glucosamine 6-phosphate (route II): step 2/2.' .
?annotation11 a up:Pathway_Annotation ;
rdfs:comment 'Nucleotide-sugar biosynthesis; UDP-N-acetyl-alpha-D-glucosamine biosynthesis; UDP-N-acetyl-alpha-D-glucosamine from N-acetyl-alpha-D-glucosamine 1-phosphate: step 1/1.' .
?annotation12 a up:Pathway_Annotation ;
rdfs:comment 'Bacterial outer membrane biogenesis; LPS lipid A biosynthesis.' .
?annotation13 a up:Subunit_Annotation ;
rdfs:comment 'Homotrimer.' .
?annotation14 a up:Subcellular_Location_Annotation .
?annotation14li15 up:cellularComponent .
?annotation16 a up:Similarity_Annotation ;
rdfs:comment 'In the N-terminal section; belongs to the N-acetylglucosamine-1-phosphate uridyltransferase family.' .
?annotation17 a up:Similarity_Annotation ;
rdfs:comment 'In the C-terminal section; belongs to the transferase hexapeptide repeat family.' .
?pfs18 up:annotation ?annotation19 .
?annotation19 faldo:begin ?pfsb20 ;
faldo:end ?pfse21 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Pyrophosphorylase' .
?pfsb20 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfse21 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfs24 up:annotation ?annotation25 .
?annotation25 faldo:begin ?pfsb26 ;
faldo:end ?pfse27 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Linker' .
?pfsb26 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfse27 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?pfs30 up:annotation ?annotation31 .
?annotation31 faldo:begin ?pfsb32 ;
faldo:end ?pfse33 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'N-acetyltransferase' .
?pfsb32 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfse33 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?pfs36 up:annotation ?annotation37 .
?annotation37 faldo:begin ?pfsb38 ;
faldo:end ?pfse39 ;
up:ligand ?ligand40 ;
rdf:type up:Binding_Site_Annotation .
?pfsb38 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?pfse39 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?ligand40 rdfs:subClassOf chebi:57705 .
?pfs43 up:annotation ?annotation44 .
?annotation44 faldo:begin ?pfsb45 ;
faldo:end ?pfse46 ;
up:ligand ?ligand47 ;
rdf:type up:Binding_Site_Annotation .
?pfsb45 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?pfse46 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?ligand47 rdfs:subClassOf chebi:57705 .
?pfs50 up:annotation ?annotation51 .
?annotation51 faldo:begin ?pfsb52 ;
faldo:end ?pfse53 ;
up:ligand ?ligand54 ;
rdf:type up:Binding_Site_Annotation .
?pfsb52 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
?pfse53 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?ligand54 rdfs:subClassOf chebi:57705 .
?pfs57 up:annotation ?annotation58 .
?annotation58 faldo:begin ?pfsb59 ;
faldo:end ?pfse60 ;
up:ligand ?ligand61 ;
rdf:type up:Binding_Site_Annotation .
?pfsb59 faldo:position ?thisPositionOn62 ;
rdf:type faldo:ExactPosition .
?pfse60 faldo:position ?thisPositionOn63 ;
rdf:type faldo:ExactPosition .
?ligand61 rdfs:subClassOf chebi:57288 .
?pfs64 up:annotation ?annotation65 .
?annotation65 faldo:begin ?pfsb66 ;
faldo:end ?pfse67 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb66 faldo:position ?thisPositionOn68 ;
rdf:type faldo:ExactPosition .
?pfse67 faldo:position ?thisPositionOn69 ;
rdf:type faldo:ExactPosition .
?pfs70 up:annotation ?annotation71 .
?annotation71 faldo:begin ?pfsb72 ;
faldo:end ?pfse73 ;
up:ligand ?ligand74 ;
rdf:type up:Binding_Site_Annotation .
?pfsb72 faldo:position ?thisPositionOn75 ;
rdf:type faldo:ExactPosition .
?pfse73 faldo:position ?thisPositionOn76 ;
rdf:type faldo:ExactPosition .
?ligand74 rdfs:subClassOf chebi:18420 .
?pfs77 up:annotation ?annotation78 .
?annotation78 faldo:begin ?pfsb79 ;
faldo:end ?pfse80 ;
up:ligand ?ligand81 ;
rdf:type up:Binding_Site_Annotation .
?pfsb79 faldo:position ?thisPositionOn82 ;
rdf:type faldo:ExactPosition .
?pfse80 faldo:position ?thisPositionOn83 ;
rdf:type faldo:ExactPosition .
?ligand81 rdfs:subClassOf chebi:18420 .
?pfs84 up:annotation ?annotation85 .
?annotation85 faldo:begin ?pfsb86 ;
faldo:end ?pfse87 ;
up:ligand ?ligand88 ;
rdf:type up:Binding_Site_Annotation .
?pfsb86 faldo:position ?thisPositionOn89 ;
rdf:type faldo:ExactPosition .
?pfse87 faldo:position ?thisPositionOn90 ;
rdf:type faldo:ExactPosition .
?ligand88 rdfs:subClassOf chebi:57705 .
?pfs91 up:annotation ?annotation92 .
?annotation92 faldo:begin ?pfsb93 ;
faldo:end ?pfse94 ;
up:ligand ?ligand95 ;
rdf:type up:Binding_Site_Annotation .
?pfsb93 faldo:position ?thisPositionOn96 ;
rdf:type faldo:ExactPosition .
?pfse94 faldo:position ?thisPositionOn97 ;
rdf:type faldo:ExactPosition .
?ligand95 rdfs:subClassOf chebi:57705 .
?pfs98 up:annotation ?annotation99 .
?annotation99 faldo:begin ?pfsb100 ;
faldo:end ?pfse101 ;
up:ligand ?ligand102 ;
rdf:type up:Binding_Site_Annotation .
?pfsb100 faldo:position ?thisPositionOn103 ;
rdf:type faldo:ExactPosition .
?pfse101 faldo:position ?thisPositionOn104 ;
rdf:type faldo:ExactPosition .
?ligand102 rdfs:subClassOf chebi:57705 .
?pfs105 up:annotation ?annotation106 .
?annotation106 faldo:begin ?pfsb107 ;
faldo:end ?pfse108 ;
up:ligand ?ligand109 ;
rdf:type up:Binding_Site_Annotation .
?pfsb107 faldo:position ?thisPositionOn110 ;
rdf:type faldo:ExactPosition .
?pfse108 faldo:position ?thisPositionOn111 ;
rdf:type faldo:ExactPosition .
?ligand109 rdfs:subClassOf chebi:57705 .
?pfs112 up:annotation ?annotation113 .
?annotation113 faldo:begin ?pfsb114 ;
faldo:end ?pfse115 ;
up:ligand ?ligand116 ;
rdf:type up:Binding_Site_Annotation .
?pfsb114 faldo:position ?thisPositionOn117 ;
rdf:type faldo:ExactPosition .
?pfse115 faldo:position ?thisPositionOn118 ;
rdf:type faldo:ExactPosition .
?ligand116 rdfs:subClassOf chebi:57705 .
?pfs119 up:annotation ?annotation120 .
?annotation120 faldo:begin ?pfsb121 ;
faldo:end ?pfse122 ;
up:ligand ?ligand123 ;
rdf:type up:Binding_Site_Annotation .
?pfsb121 faldo:position ?thisPositionOn124 ;
rdf:type faldo:ExactPosition .
?pfse122 faldo:position ?thisPositionOn125 ;
rdf:type faldo:ExactPosition .
?ligand123 rdfs:subClassOf chebi:57705 .
?pfs126 up:annotation ?annotation127 .
?annotation127 faldo:begin ?pfsb128 ;
faldo:end ?pfse129 ;
up:ligand ?ligand130 ;
rdf:type up:Binding_Site_Annotation .
?pfsb128 faldo:position ?thisPositionOn131 ;
rdf:type faldo:ExactPosition .
?pfse129 faldo:position ?thisPositionOn132 ;
rdf:type faldo:ExactPosition .
?ligand130 rdfs:subClassOf chebi:57705 .
?pfs133 up:annotation ?annotation134 .
?annotation134 faldo:begin ?pfsb135 ;
faldo:end ?pfse136 ;
up:ligand ?ligand137 ;
rdf:type up:Binding_Site_Annotation .
?pfsb135 faldo:position ?thisPositionOn138 ;
rdf:type faldo:ExactPosition .
?pfse136 faldo:position ?thisPositionOn139 ;
rdf:type faldo:ExactPosition .
?ligand137 rdfs:subClassOf chebi:57705 .
?pfs140 up:annotation ?annotation141 .
?annotation141 faldo:begin ?pfsb142 ;
faldo:end ?pfse143 ;
up:ligand ?ligand144 ;
rdf:type up:Binding_Site_Annotation .
?pfsb142 faldo:position ?thisPositionOn145 ;
rdf:type faldo:ExactPosition .
?pfse143 faldo:position ?thisPositionOn146 ;
rdf:type faldo:ExactPosition .
?ligand144 rdfs:subClassOf chebi:57705 .
?pfs147 up:annotation ?annotation148 .
?annotation148 faldo:begin ?pfsb149 ;
faldo:end ?pfse150 ;
up:ligand ?ligand151 ;
rdf:type up:Binding_Site_Annotation .
?pfsb149 faldo:position ?thisPositionOn152 ;
rdf:type faldo:ExactPosition .
?pfse150 faldo:position ?thisPositionOn153 ;
rdf:type faldo:ExactPosition .
?ligand151 rdfs:subClassOf chebi:57705 .
?pfs154 up:annotation ?annotation155 .
?annotation155 faldo:begin ?pfsb156 ;
faldo:end ?pfse157 ;
up:ligand ?ligand158 ;
rdf:type up:Binding_Site_Annotation .
?pfsb156 faldo:position ?thisPositionOn159 ;
rdf:type faldo:ExactPosition .
?pfse157 faldo:position ?thisPositionOn160 ;
rdf:type faldo:ExactPosition .
?ligand158 rdfs:subClassOf chebi:57288 .
?pfs161 up:annotation ?annotation162 .
?annotation162 faldo:begin ?pfsb163 ;
faldo:end ?pfse164 ;
up:ligand ?ligand165 ;
rdf:type up:Binding_Site_Annotation .
?pfsb163 faldo:position ?thisPositionOn166 ;
rdf:type faldo:ExactPosition .
?pfse164 faldo:position ?thisPositionOn167 ;
rdf:type faldo:ExactPosition .
?ligand165 rdfs:subClassOf chebi:57288 .
?pfs168 up:annotation ?annotation169 .
?annotation169 faldo:begin ?pfsb170 ;
faldo:end ?pfse171 ;
up:ligand ?ligand172 ;
rdf:type up:Binding_Site_Annotation .
?pfsb170 faldo:position ?thisPositionOn173 ;
rdf:type faldo:ExactPosition .
?pfse171 faldo:position ?thisPositionOn174 ;
rdf:type faldo:ExactPosition .
?ligand172 rdfs:subClassOf chebi:57288 .
?pfs175 up:annotation ?annotation176 .
?annotation176 faldo:begin ?pfsb177 ;
faldo:end ?pfse178 ;
up:ligand ?ligand179 ;
rdf:type up:Binding_Site_Annotation .
?pfsb177 faldo:position ?thisPositionOn180 ;
rdf:type faldo:ExactPosition .
?pfse178 faldo:position ?thisPositionOn181 ;
rdf:type faldo:ExactPosition .
?ligand179 rdfs:subClassOf chebi:57288 .
_:592874 a rdf:Statement ;
up:attribution _:592814 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:592875 a rdf:Statement ;
up:attribution _:592817 ;
rdf:subject ?this ;
rdf:predicate up:domain ;
rdf:object ?namedpart1 .
_:592876 a rdf:Statement ;
up:attribution _:592819 ;
rdf:subject ?this ;
rdf:predicate up:domain ;
rdf:object ?namedpart2 .
_:592877 a rdf:Statement ;
up:attribution _:592820 ;
rdf:subject ?gene3 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene3 .
_:592878 a rdf:Statement ;
up:attribution _:592821 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:592879 a rdf:Statement ;
up:attribution _:592822 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:592880 a rdf:Statement ;
up:attribution _:592823 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:592881 a rdf:Statement ;
up:attribution _:592824 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:592882 a rdf:Statement ;
up:attribution _:592825 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:592883 a rdf:Statement ;
up:attribution _:592826 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:592884 a rdf:Statement ;
up:attribution _:592827 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:592885 a rdf:Statement ;
up:attribution _:592828 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:592886 a rdf:Statement ;
up:attribution _:592829 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:592887 a rdf:Statement ;
up:attribution _:592830 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:592888 a rdf:Statement ;
up:attribution _:592831 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:592889 a rdf:Statement ;
up:attribution _:592832 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:592890 a rdf:Statement ;
up:attribution _:592833 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:12 .
_:592891 a rdf:Statement ;
up:attribution _:592834 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:133 .
_:592892 a rdf:Statement ;
up:attribution _:592835 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:961 .
_:592893 a rdf:Statement ;
up:attribution _:592836 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:592894 a rdf:Statement ;
up:attribution _:592837 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:592895 a rdf:Statement ;
up:attribution _:592838 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:511 .
_:592896 a rdf:Statement ;
up:attribution _:592839 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:548 .
_:592897 a rdf:Statement ;
up:attribution _:592840 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:573 .
_:592898 a rdf:Statement ;
up:attribution _:592841 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:677 .
_:592899 a rdf:Statement ;
up:attribution _:592842 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:592900 a rdf:Statement ;
up:attribution _:592843 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000287 .
_:592901 a rdf:Statement ;
up:attribution _:592844 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003977 .
_:592902 a rdf:Statement ;
up:attribution _:592845 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019134 .
_:592903 a rdf:Statement ;
up:attribution _:592846 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000902 .
_:592904 a rdf:Statement ;
up:attribution _:592847 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009252 .
_:592905 a rdf:Statement ;
up:attribution _:592848 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009245 .
_:592906 a rdf:Statement ;
up:attribution _:592849 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:592907 a rdf:Statement ;
up:source unirule:MF_01631 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:592908 a rdf:Statement ;
up:attribution _:592850 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:592909 a rdf:Statement ;
up:source unirule:MF_01631 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:592910 a rdf:Statement ;
up:attribution _:592851 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:592911 a rdf:Statement ;
up:source unirule:MF_01631 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:592912 a rdf:Statement ;
up:attribution _:592852 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:592913 a rdf:Statement ;
up:source unirule:MF_01631 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:592914 a rdf:Statement ;
up:attribution _:592853 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:592915 a rdf:Statement ;
up:source unirule:MF_01631 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
_:592916 a rdf:Statement ;
up:attribution _:592854 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
_:592917 a rdf:Statement ;
up:source unirule:MF_01631 ;
rdf:subject ?pfs50 ;
rdf:predicate up:annotation ;
rdf:object ?annotation51 .
_:592918 a rdf:Statement ;
up:attribution _:592855 ;
rdf:subject ?pfs50 ;
rdf:predicate up:annotation ;
rdf:object ?annotation51 .
_:592919 a rdf:Statement ;
up:source unirule:MF_01631 ;
rdf:subject ?pfs57 ;
rdf:predicate up:annotation ;
rdf:object ?annotation58 .
_:592920 a rdf:Statement ;
up:attribution _:592856 ;
rdf:subject ?pfs57 ;
rdf:predicate up:annotation ;
rdf:object ?annotation58 .
_:592921 a rdf:Statement ;
up:source unirule:MF_01631 ;
rdf:subject ?pfs64 ;
rdf:predicate up:annotation ;
rdf:object ?annotation65 .
_:592922 a rdf:Statement ;
up:attribution _:592857 ;
rdf:subject ?pfs64 ;
rdf:predicate up:annotation ;
rdf:object ?annotation65 .
_:592923 a rdf:Statement ;
up:source unirule:MF_01631 ;
rdf:subject ?pfs70 ;
rdf:predicate up:annotation ;
rdf:object ?annotation71 .
_:592924 a rdf:Statement ;
up:attribution _:592858 ;
rdf:subject ?pfs70 ;
rdf:predicate up:annotation ;
rdf:object ?annotation71 .
_:592925 a rdf:Statement ;
up:source unirule:MF_01631 ;
rdf:subject ?pfs77 ;
rdf:predicate up:annotation ;
rdf:object ?annotation78 .
_:592926 a rdf:Statement ;
up:attribution _:592859 ;
rdf:subject ?pfs77 ;
rdf:predicate up:annotation ;
rdf:object ?annotation78 .
_:592927 a rdf:Statement ;
up:source unirule:MF_01631 ;
rdf:subject ?pfs84 ;
rdf:predicate up:annotation ;
rdf:object ?annotation85 .
_:592928 a rdf:Statement ;
up:attribution _:592860 ;
rdf:subject ?pfs84 ;
rdf:predicate up:annotation ;
rdf:object ?annotation85 .
_:592929 a rdf:Statement ;
up:source unirule:MF_01631 ;
rdf:subject ?pfs91 ;
rdf:predicate up:annotation ;
rdf:object ?annotation92 .
_:592930 a rdf:Statement ;
up:attribution _:592861 ;
rdf:subject ?pfs91 ;
rdf:predicate up:annotation ;
rdf:object ?annotation92 .
_:592931 a rdf:Statement ;
up:source unirule:MF_01631 ;
rdf:subject ?pfs98 ;
rdf:predicate up:annotation ;
rdf:object ?annotation99 .
_:592932 a rdf:Statement ;
up:attribution _:592862 ;
rdf:subject ?pfs98 ;
rdf:predicate up:annotation ;
rdf:object ?annotation99 .
_:592933 a rdf:Statement ;
up:source unirule:MF_01631 ;
rdf:subject ?pfs105 ;
rdf:predicate up:annotation ;
rdf:object ?annotation106 .
_:592934 a rdf:Statement ;
up:attribution _:592863 ;
rdf:subject ?pfs105 ;
rdf:predicate up:annotation ;
rdf:object ?annotation106 .
_:592935 a rdf:Statement ;
up:source unirule:MF_01631 ;
rdf:subject ?pfs112 ;
rdf:predicate up:annotation ;
rdf:object ?annotation113 .
_:592936 a rdf:Statement ;
up:attribution _:592864 ;
rdf:subject ?pfs112 ;
rdf:predicate up:annotation ;
rdf:object ?annotation113 .
_:592937 a rdf:Statement ;
up:source unirule:MF_01631 ;
rdf:subject ?pfs119 ;
rdf:predicate up:annotation ;
rdf:object ?annotation120 .
_:592938 a rdf:Statement ;
up:attribution _:592865 ;
rdf:subject ?pfs119 ;
rdf:predicate up:annotation ;
rdf:object ?annotation120 .
_:592939 a rdf:Statement ;
up:source unirule:MF_01631 ;
rdf:subject ?pfs126 ;
rdf:predicate up:annotation ;
rdf:object ?annotation127 .
_:592940 a rdf:Statement ;
up:attribution _:592866 ;
rdf:subject ?pfs126 ;
rdf:predicate up:annotation ;
rdf:object ?annotation127 .
_:592941 a rdf:Statement ;
up:source unirule:MF_01631 ;
rdf:subject ?pfs133 ;
rdf:predicate up:annotation ;
rdf:object ?annotation134 .
_:592942 a rdf:Statement ;
up:attribution _:592867 ;
rdf:subject ?pfs133 ;
rdf:predicate up:annotation ;
rdf:object ?annotation134 .
_:592943 a rdf:Statement ;
up:source unirule:MF_01631 ;
rdf:subject ?pfs140 ;
rdf:predicate up:annotation ;
rdf:object ?annotation141 .
_:592944 a rdf:Statement ;
up:attribution _:592868 ;
rdf:subject ?pfs140 ;
rdf:predicate up:annotation ;
rdf:object ?annotation141 .
_:592945 a rdf:Statement ;
up:source unirule:MF_01631 ;
rdf:subject ?pfs147 ;
rdf:predicate up:annotation ;
rdf:object ?annotation148 .
_:592946 a rdf:Statement ;
up:attribution _:592869 ;
rdf:subject ?pfs147 ;
rdf:predicate up:annotation ;
rdf:object ?annotation148 .
_:592947 a rdf:Statement ;
up:source unirule:MF_01631 ;
rdf:subject ?pfs154 ;
rdf:predicate up:annotation ;
rdf:object ?annotation155 .
_:592948 a rdf:Statement ;
up:attribution _:592870 ;
rdf:subject ?pfs154 ;
rdf:predicate up:annotation ;
rdf:object ?annotation155 .
_:592949 a rdf:Statement ;
up:source unirule:MF_01631 ;
rdf:subject ?pfs161 ;
rdf:predicate up:annotation ;
rdf:object ?annotation162 .
_:592950 a rdf:Statement ;
up:attribution _:592871 ;
rdf:subject ?pfs161 ;
rdf:predicate up:annotation ;
rdf:object ?annotation162 .
_:592951 a rdf:Statement ;
up:source unirule:MF_01631 ;
rdf:subject ?pfs168 ;
rdf:predicate up:annotation ;
rdf:object ?annotation169 .
_:592952 a rdf:Statement ;
up:attribution _:592872 ;
rdf:subject ?pfs168 ;
rdf:predicate up:annotation ;
rdf:object ?annotation169 .
_:592953 a rdf:Statement ;
up:source unirule:MF_01631 ;
rdf:subject ?pfs175 ;
rdf:predicate up:annotation ;
rdf:object ?annotation176 .
_:592954 a rdf:Statement ;
up:attribution _:592873 ;
rdf:subject ?pfs175 ;
rdf:predicate up:annotation ;
rdf:object ?annotation176 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01631
#Rule MF_01631 Created by:? on:2006-04-04 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01631 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_01631a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01631a1')) AS ?namedpart1) .
BIND(URI(CONCAT(STR(?this), '#MF_01631a2')) AS ?namedpart2) .
BIND(URI(CONCAT(STR(?this), '#MF_01631a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01631a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01631a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01631a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_01631a10')) AS ?annotation10) .
BIND(URI(CONCAT(STR(?this), '#MF_01631a11')) AS ?annotation11) .
BIND(URI(CONCAT(STR(?this), '#MF_01631a12')) AS ?annotation12) .
BIND(URI(CONCAT(STR(?this), '#MF_01631a13')) AS ?annotation13) .
BIND(URI(CONCAT(STR(?this), '#MF_01631a14')) AS ?annotation14) .
BIND(URI(CONCAT(STR(?this), '#MF_01631a16')) AS ?annotation16) .
BIND(URI(CONCAT(STR(?this), '#MF_01631a17')) AS ?annotation17) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch186 faldo:location ?templateMotifSequenceMatchRegionP0ACC7187 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ACC7189 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ACC7MF_01631182 .
?templateMotifSequenceMatchRegionP0ACC7187 faldo:begin ?templateMotifSequenceMatchBeginP0ACC7188 .
?templateMotifSequenceMatchBeginP0ACC7188 faldo:position ?templateMotifSequenceMatchBeginPositionP0ACC7183 ;
faldo:reference isoform:P0ACC7-1 .
?templateMotifSequenceProfileAlignmentOperationP0ACC7189 edam:has_input signature:MF_01631 ;
rdf:type edam:operation_0300 .
?targetMotifMatch190 faldo:location ?targetMotifMatchRegionMatch191 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01631193 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ACC7MF_01631184 .
?targetMotifMatchRegionMatch191 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01631192 .
?targetMotifMatchRegionMatchBeginMF_01631192 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01631185 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01631193 edam:has_input signature:MF_01631 ;
rdf:type edam:operation_0300 .
BIND(1 AS ?thisPositionOn22) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ACC7MF_01631182, 1, (STRLEN(?templateMotifCigarP0ACC7MF_01631182) - STRLEN(REPLACE(?templateMotifCigarP0ACC7MF_01631182, CONCAT('^(?:-*[^-]){', STR(((229 - ?templateMotifSequenceMatchBeginPositionP0ACC7183) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1194) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ACC7MF_01631184, 1, (STRLEN(?targetMotifMatchCigarP0ACC7MF_01631184) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACC7MF_01631184, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1194), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ACC7MF_01631184, 1, (STRLEN(?targetMotifMatchCigarP0ACC7MF_01631184) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACC7MF_01631184, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1194), '}'), '')))), '[^-]', ''))) AS ?step2195) .
BIND(((?step2195 + ?targetMotifMatchRegionMatchBeginPositionMF_01631185) - 1) AS ?thisPositionOn23) .
BIND(?this AS ?pfs1t196) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb20) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse21) .
FILTER ((BOUND(?thisPositionOn22) && BOUND(?thisPositionOn23))) .
BIND(URI(CONCAT(STR(?this), '#MF_01631a19')) AS ?annotation19) .
BIND(?this AS ?pfs18) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch201 faldo:location ?templateMotifSequenceMatchRegionP0ACC7202 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ACC7204 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ACC7MF_01631197 .
?templateMotifSequenceMatchRegionP0ACC7202 faldo:begin ?templateMotifSequenceMatchBeginP0ACC7203 .
?templateMotifSequenceMatchBeginP0ACC7203 faldo:position ?templateMotifSequenceMatchBeginPositionP0ACC7198 ;
faldo:reference isoform:P0ACC7-1 .
?templateMotifSequenceProfileAlignmentOperationP0ACC7204 edam:has_input signature:MF_01631 ;
rdf:type edam:operation_0300 .
?targetMotifMatch205 faldo:location ?targetMotifMatchRegionMatch206 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01631208 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ACC7MF_01631199 .
?targetMotifMatchRegionMatch206 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01631207 .
?targetMotifMatchRegionMatchBeginMF_01631207 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01631200 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01631208 edam:has_input signature:MF_01631 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ACC7MF_01631197, 1, (STRLEN(?templateMotifCigarP0ACC7MF_01631197) - STRLEN(REPLACE(?templateMotifCigarP0ACC7MF_01631197, CONCAT('^(?:-*[^-]){', STR(((230 - ?templateMotifSequenceMatchBeginPositionP0ACC7198) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1209) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ACC7MF_01631199, 1, (STRLEN(?targetMotifMatchCigarP0ACC7MF_01631199) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACC7MF_01631199, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1209), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ACC7MF_01631199, 1, (STRLEN(?targetMotifMatchCigarP0ACC7MF_01631199) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACC7MF_01631199, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1209), '}'), '')))), '[^-]', ''))) AS ?step2210) .
BIND(((?step2210 + ?targetMotifMatchRegionMatchBeginPositionMF_01631200) - 1) AS ?thisPositionOn28) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ACC7MF_01631197, 1, (STRLEN(?templateMotifCigarP0ACC7MF_01631197) - STRLEN(REPLACE(?templateMotifCigarP0ACC7MF_01631197, CONCAT('^(?:-*[^-]){', STR(((250 - ?templateMotifSequenceMatchBeginPositionP0ACC7198) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1211) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ACC7MF_01631199, 1, (STRLEN(?targetMotifMatchCigarP0ACC7MF_01631199) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACC7MF_01631199, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1211), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ACC7MF_01631199, 1, (STRLEN(?targetMotifMatchCigarP0ACC7MF_01631199) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACC7MF_01631199, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1211), '}'), '')))), '[^-]', ''))) AS ?step2212) .
BIND(((?step2212 + ?targetMotifMatchRegionMatchBeginPositionMF_01631200) - 1) AS ?thisPositionOn29) .
BIND(?this AS ?pfs1t213) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb26) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse27) .
FILTER ((BOUND(?thisPositionOn28) && BOUND(?thisPositionOn29))) .
BIND(URI(CONCAT(STR(?this), '#MF_01631a25')) AS ?annotation25) .
BIND(?this AS ?pfs24) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch218 faldo:location ?templateMotifSequenceMatchRegionP0ACC7219 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ACC7221 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ACC7MF_01631214 .
?templateMotifSequenceMatchRegionP0ACC7219 faldo:begin ?templateMotifSequenceMatchBeginP0ACC7220 .
?templateMotifSequenceMatchBeginP0ACC7220 faldo:position ?templateMotifSequenceMatchBeginPositionP0ACC7215 ;
faldo:reference isoform:P0ACC7-1 .
?templateMotifSequenceProfileAlignmentOperationP0ACC7221 edam:has_input signature:MF_01631 ;
rdf:type edam:operation_0300 .
?targetMotifMatch222 faldo:location ?targetMotifMatchRegionMatch223 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01631225 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ACC7MF_01631216 .
?targetMotifMatchRegionMatch223 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01631224 .
?targetMotifMatchRegionMatchBeginMF_01631224 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01631217 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01631225 edam:has_input signature:MF_01631 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ACC7MF_01631214, 1, (STRLEN(?templateMotifCigarP0ACC7MF_01631214) - STRLEN(REPLACE(?templateMotifCigarP0ACC7MF_01631214, CONCAT('^(?:-*[^-]){', STR(((251 - ?templateMotifSequenceMatchBeginPositionP0ACC7215) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1226) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ACC7MF_01631216, 1, (STRLEN(?targetMotifMatchCigarP0ACC7MF_01631216) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACC7MF_01631216, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1226), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ACC7MF_01631216, 1, (STRLEN(?targetMotifMatchCigarP0ACC7MF_01631216) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACC7MF_01631216, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1226), '}'), '')))), '[^-]', ''))) AS ?step2227) .
BIND(((?step2227 + ?targetMotifMatchRegionMatchBeginPositionMF_01631217) - 1) AS ?thisPositionOn34) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn35) .
BIND(?this AS ?pfs1t228) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb32) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse33) .
FILTER ((BOUND(?thisPositionOn34) && BOUND(?thisPositionOn35))) .
BIND(URI(CONCAT(STR(?this), '#MF_01631a31')) AS ?annotation31) .
BIND(?this AS ?pfs30) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch233 faldo:location ?templateMotifSequenceMatchRegionP0ACC7234 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ACC7236 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ACC7MF_01631229 .
?templateMotifSequenceMatchRegionP0ACC7234 faldo:begin ?templateMotifSequenceMatchBeginP0ACC7235 .
?templateMotifSequenceMatchBeginP0ACC7235 faldo:position ?templateMotifSequenceMatchBeginPositionP0ACC7230 ;
faldo:reference isoform:P0ACC7-1 .
?templateMotifSequenceProfileAlignmentOperationP0ACC7236 edam:has_input signature:MF_01631 ;
rdf:type edam:operation_0300 .
?targetMotifMatch237 faldo:location ?targetMotifMatchRegionMatch238 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01631240 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ACC7MF_01631231 .
?targetMotifMatchRegionMatch238 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01631239 .
?targetMotifMatchRegionMatchBeginMF_01631239 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01631232 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01631240 edam:has_input signature:MF_01631 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ACC7MF_01631229, 1, (STRLEN(?templateMotifCigarP0ACC7MF_01631229) - STRLEN(REPLACE(?templateMotifCigarP0ACC7MF_01631229, CONCAT('^(?:-*[^-]){', STR(((11 - ?templateMotifSequenceMatchBeginPositionP0ACC7230) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1241) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ACC7MF_01631231, 1, (STRLEN(?targetMotifMatchCigarP0ACC7MF_01631231) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACC7MF_01631231, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1241), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ACC7MF_01631231, 1, (STRLEN(?targetMotifMatchCigarP0ACC7MF_01631231) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACC7MF_01631231, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1241), '}'), '')))), '[^-]', ''))) AS ?step2242) .
BIND(((?step2242 + ?targetMotifMatchRegionMatchBeginPositionMF_01631232) - 1) AS ?thisPositionOn41) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ACC7MF_01631229, 1, (STRLEN(?templateMotifCigarP0ACC7MF_01631229) - STRLEN(REPLACE(?templateMotifCigarP0ACC7MF_01631229, CONCAT('^(?:-*[^-]){', STR(((14 - ?templateMotifSequenceMatchBeginPositionP0ACC7230) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1243) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ACC7MF_01631231, 1, (STRLEN(?targetMotifMatchCigarP0ACC7MF_01631231) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACC7MF_01631231, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1243), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ACC7MF_01631231, 1, (STRLEN(?targetMotifMatchCigarP0ACC7MF_01631231) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACC7MF_01631231, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1243), '}'), '')))), '[^-]', ''))) AS ?step2244) .
BIND(((?step2244 + ?targetMotifMatchRegionMatchBeginPositionMF_01631232) - 1) AS ?thisPositionOn42) .
BIND(?this AS ?pfs1t245) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfsb38) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfse39) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn41, (?thisPositionOn42 - ?thisPositionOn41)) = 'LAAG')) .
BIND(URI(CONCAT(STR(?this), '#MF_01631a37')) AS ?annotation37) .
BIND(?this AS ?pfs36) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch250 faldo:location ?templateMotifSequenceMatchRegionP0ACC7251 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ACC7253 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ACC7MF_01631246 .
?templateMotifSequenceMatchRegionP0ACC7251 faldo:begin ?templateMotifSequenceMatchBeginP0ACC7252 .
?templateMotifSequenceMatchBeginP0ACC7252 faldo:position ?templateMotifSequenceMatchBeginPositionP0ACC7247 ;
faldo:reference isoform:P0ACC7-1 .
?templateMotifSequenceProfileAlignmentOperationP0ACC7253 edam:has_input signature:MF_01631 ;
rdf:type edam:operation_0300 .
?targetMotifMatch254 faldo:location ?targetMotifMatchRegionMatch255 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01631257 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ACC7MF_01631248 .
?targetMotifMatchRegionMatch255 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01631256 .
?targetMotifMatchRegionMatchBeginMF_01631256 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01631249 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01631257 edam:has_input signature:MF_01631 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ACC7MF_01631246, 1, (STRLEN(?templateMotifCigarP0ACC7MF_01631246) - STRLEN(REPLACE(?templateMotifCigarP0ACC7MF_01631246, CONCAT('^(?:-*[^-]){', STR(((81 - ?templateMotifSequenceMatchBeginPositionP0ACC7247) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1258) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ACC7MF_01631248, 1, (STRLEN(?targetMotifMatchCigarP0ACC7MF_01631248) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACC7MF_01631248, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1258), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ACC7MF_01631248, 1, (STRLEN(?targetMotifMatchCigarP0ACC7MF_01631248) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACC7MF_01631248, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1258), '}'), '')))), '[^-]', ''))) AS ?step2259) .
BIND(((?step2259 + ?targetMotifMatchRegionMatchBeginPositionMF_01631249) - 1) AS ?thisPositionOn48) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ACC7MF_01631246, 1, (STRLEN(?templateMotifCigarP0ACC7MF_01631246) - STRLEN(REPLACE(?templateMotifCigarP0ACC7MF_01631246, CONCAT('^(?:-*[^-]){', STR(((82 - ?templateMotifSequenceMatchBeginPositionP0ACC7247) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1260) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ACC7MF_01631248, 1, (STRLEN(?targetMotifMatchCigarP0ACC7MF_01631248) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACC7MF_01631248, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1260), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ACC7MF_01631248, 1, (STRLEN(?targetMotifMatchCigarP0ACC7MF_01631248) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACC7MF_01631248, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1260), '}'), '')))), '[^-]', ''))) AS ?step2261) .
BIND(((?step2261 + ?targetMotifMatchRegionMatchBeginPositionMF_01631249) - 1) AS ?thisPositionOn49) .
BIND(?this AS ?pfs1t262) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfsb45) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfse46) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn48, (?thisPositionOn49 - ?thisPositionOn48)) = 'GT')) .
BIND(URI(CONCAT(STR(?this), '#MF_01631a44')) AS ?annotation44) .
BIND(?this AS ?pfs43) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch267 faldo:location ?templateMotifSequenceMatchRegionP0ACC7268 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ACC7270 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ACC7MF_01631263 .
?templateMotifSequenceMatchRegionP0ACC7268 faldo:begin ?templateMotifSequenceMatchBeginP0ACC7269 .
?templateMotifSequenceMatchBeginP0ACC7269 faldo:position ?templateMotifSequenceMatchBeginPositionP0ACC7264 ;
faldo:reference isoform:P0ACC7-1 .
?templateMotifSequenceProfileAlignmentOperationP0ACC7270 edam:has_input signature:MF_01631 ;
rdf:type edam:operation_0300 .
?targetMotifMatch271 faldo:location ?targetMotifMatchRegionMatch272 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01631274 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ACC7MF_01631265 .
?targetMotifMatchRegionMatch272 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01631273 .
?targetMotifMatchRegionMatchBeginMF_01631273 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01631266 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01631274 edam:has_input signature:MF_01631 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ACC7MF_01631263, 1, (STRLEN(?templateMotifCigarP0ACC7MF_01631263) - STRLEN(REPLACE(?templateMotifCigarP0ACC7MF_01631263, CONCAT('^(?:-*[^-]){', STR(((103 - ?templateMotifSequenceMatchBeginPositionP0ACC7264) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1275) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ACC7MF_01631265, 1, (STRLEN(?targetMotifMatchCigarP0ACC7MF_01631265) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACC7MF_01631265, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1275), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ACC7MF_01631265, 1, (STRLEN(?targetMotifMatchCigarP0ACC7MF_01631265) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACC7MF_01631265, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1275), '}'), '')))), '[^-]', ''))) AS ?step2276) .
BIND(((?step2276 + ?targetMotifMatchRegionMatchBeginPositionMF_01631266) - 1) AS ?thisPositionOn55) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ACC7MF_01631263, 1, (STRLEN(?templateMotifCigarP0ACC7MF_01631263) - STRLEN(REPLACE(?templateMotifCigarP0ACC7MF_01631263, CONCAT('^(?:-*[^-]){', STR(((105 - ?templateMotifSequenceMatchBeginPositionP0ACC7264) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1277) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ACC7MF_01631265, 1, (STRLEN(?targetMotifMatchCigarP0ACC7MF_01631265) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACC7MF_01631265, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1277), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ACC7MF_01631265, 1, (STRLEN(?targetMotifMatchCigarP0ACC7MF_01631265) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACC7MF_01631265, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1277), '}'), '')))), '[^-]', ''))) AS ?step2278) .
BIND(((?step2278 + ?targetMotifMatchRegionMatchBeginPositionMF_01631266) - 1) AS ?thisPositionOn56) .
BIND(?this AS ?pfs1t279) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfsb52) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfse53) .
FILTER (REGEX('[SY]GD', SUBSTR(?thisSequenceValue, ?thisPositionOn55, (?thisPositionOn56 - ?thisPositionOn55)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01631a51')) AS ?annotation51) .
BIND(?this AS ?pfs50) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch284 faldo:location ?templateMotifSequenceMatchRegionP0ACC7285 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ACC7287 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ACC7MF_01631280 .
?templateMotifSequenceMatchRegionP0ACC7285 faldo:begin ?templateMotifSequenceMatchBeginP0ACC7286 .
?templateMotifSequenceMatchBeginP0ACC7286 faldo:position ?templateMotifSequenceMatchBeginPositionP0ACC7281 ;
faldo:reference isoform:P0ACC7-1 .
?templateMotifSequenceProfileAlignmentOperationP0ACC7287 edam:has_input signature:MF_01631 ;
rdf:type edam:operation_0300 .
?targetMotifMatch288 faldo:location ?targetMotifMatchRegionMatch289 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01631291 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ACC7MF_01631282 .
?targetMotifMatchRegionMatch289 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01631290 .
?targetMotifMatchRegionMatchBeginMF_01631290 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01631283 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01631291 edam:has_input signature:MF_01631 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ACC7MF_01631280, 1, (STRLEN(?templateMotifCigarP0ACC7MF_01631280) - STRLEN(REPLACE(?templateMotifCigarP0ACC7MF_01631280, CONCAT('^(?:-*[^-]){', STR(((386 - ?templateMotifSequenceMatchBeginPositionP0ACC7281) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1292) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ACC7MF_01631282, 1, (STRLEN(?targetMotifMatchCigarP0ACC7MF_01631282) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACC7MF_01631282, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1292), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ACC7MF_01631282, 1, (STRLEN(?targetMotifMatchCigarP0ACC7MF_01631282) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACC7MF_01631282, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1292), '}'), '')))), '[^-]', ''))) AS ?step2293) .
BIND(((?step2293 + ?targetMotifMatchRegionMatchBeginPositionMF_01631283) - 1) AS ?thisPositionOn62) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ACC7MF_01631280, 1, (STRLEN(?templateMotifCigarP0ACC7MF_01631280) - STRLEN(REPLACE(?templateMotifCigarP0ACC7MF_01631280, CONCAT('^(?:-*[^-]){', STR(((387 - ?templateMotifSequenceMatchBeginPositionP0ACC7281) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1294) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ACC7MF_01631282, 1, (STRLEN(?targetMotifMatchCigarP0ACC7MF_01631282) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACC7MF_01631282, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1294), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ACC7MF_01631282, 1, (STRLEN(?targetMotifMatchCigarP0ACC7MF_01631282) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACC7MF_01631282, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1294), '}'), '')))), '[^-]', ''))) AS ?step2295) .
BIND(((?step2295 + ?targetMotifMatchRegionMatchBeginPositionMF_01631283) - 1) AS ?thisPositionOn63) .
BIND(?this AS ?pfs1t296) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfsb59) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfse60) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn62, (?thisPositionOn63 - ?thisPositionOn62)) = 'NY')) .
BIND(URI(CONCAT(STR(?this), '#MF_01631a58')) AS ?annotation58) .
BIND(?this AS ?pfs57) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch301 faldo:location ?templateMotifSequenceMatchRegionP0ACC7302 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ACC7304 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ACC7MF_01631297 .
?templateMotifSequenceMatchRegionP0ACC7302 faldo:begin ?templateMotifSequenceMatchBeginP0ACC7303 .
?templateMotifSequenceMatchBeginP0ACC7303 faldo:position ?templateMotifSequenceMatchBeginPositionP0ACC7298 ;
faldo:reference isoform:P0ACC7-1 .
?templateMotifSequenceProfileAlignmentOperationP0ACC7304 edam:has_input signature:MF_01631 ;
rdf:type edam:operation_0300 .
?targetMotifMatch305 faldo:location ?targetMotifMatchRegionMatch306 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01631308 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ACC7MF_01631299 .
?targetMotifMatchRegionMatch306 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01631307 .
?targetMotifMatchRegionMatchBeginMF_01631307 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01631300 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01631308 edam:has_input signature:MF_01631 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ACC7MF_01631297, 1, (STRLEN(?templateMotifCigarP0ACC7MF_01631297) - STRLEN(REPLACE(?templateMotifCigarP0ACC7MF_01631297, CONCAT('^(?:-*[^-]){', STR(((363 - ?templateMotifSequenceMatchBeginPositionP0ACC7298) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1309) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ACC7MF_01631299, 1, (STRLEN(?targetMotifMatchCigarP0ACC7MF_01631299) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACC7MF_01631299, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1309), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ACC7MF_01631299, 1, (STRLEN(?targetMotifMatchCigarP0ACC7MF_01631299) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACC7MF_01631299, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1309), '}'), '')))), '[^-]', ''))) AS ?step2310) .
BIND(((?step2310 + ?targetMotifMatchRegionMatchBeginPositionMF_01631300) - 1) AS ?thisPositionOn68) .
BIND(?thisPositionOn68 AS ?thisPositionOn69) .
BIND(?this AS ?pfs1t311) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn68))) AS ?pfsb66) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn69))) AS ?pfse67) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn68, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01631a65')) AS ?annotation65) .
BIND(?this AS ?pfs64) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch316 faldo:location ?templateMotifSequenceMatchRegionP0ACC7317 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ACC7319 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ACC7MF_01631312 .
?templateMotifSequenceMatchRegionP0ACC7317 faldo:begin ?templateMotifSequenceMatchBeginP0ACC7318 .
?templateMotifSequenceMatchBeginP0ACC7318 faldo:position ?templateMotifSequenceMatchBeginPositionP0ACC7313 ;
faldo:reference isoform:P0ACC7-1 .
?templateMotifSequenceProfileAlignmentOperationP0ACC7319 edam:has_input signature:MF_01631 ;
rdf:type edam:operation_0300 .
?targetMotifMatch320 faldo:location ?targetMotifMatchRegionMatch321 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01631323 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ACC7MF_01631314 .
?targetMotifMatchRegionMatch321 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01631322 .
?targetMotifMatchRegionMatchBeginMF_01631322 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01631315 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01631323 edam:has_input signature:MF_01631 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ACC7MF_01631312, 1, (STRLEN(?templateMotifCigarP0ACC7MF_01631312) - STRLEN(REPLACE(?templateMotifCigarP0ACC7MF_01631312, CONCAT('^(?:-*[^-]){', STR(((105 - ?templateMotifSequenceMatchBeginPositionP0ACC7313) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1324) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ACC7MF_01631314, 1, (STRLEN(?targetMotifMatchCigarP0ACC7MF_01631314) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACC7MF_01631314, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1324), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ACC7MF_01631314, 1, (STRLEN(?targetMotifMatchCigarP0ACC7MF_01631314) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACC7MF_01631314, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1324), '}'), '')))), '[^-]', ''))) AS ?step2325) .
BIND(((?step2325 + ?targetMotifMatchRegionMatchBeginPositionMF_01631315) - 1) AS ?thisPositionOn75) .
BIND(?thisPositionOn75 AS ?thisPositionOn76) .
BIND(?this AS ?pfs1t326) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn75))) AS ?pfsb72) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn76))) AS ?pfse73) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn75, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01631a71')) AS ?annotation71) .
BIND(?this AS ?pfs70) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch331 faldo:location ?templateMotifSequenceMatchRegionP0ACC7332 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ACC7334 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ACC7MF_01631327 .
?templateMotifSequenceMatchRegionP0ACC7332 faldo:begin ?templateMotifSequenceMatchBeginP0ACC7333 .
?templateMotifSequenceMatchBeginP0ACC7333 faldo:position ?templateMotifSequenceMatchBeginPositionP0ACC7328 ;
faldo:reference isoform:P0ACC7-1 .
?templateMotifSequenceProfileAlignmentOperationP0ACC7334 edam:has_input signature:MF_01631 ;
rdf:type edam:operation_0300 .
?targetMotifMatch335 faldo:location ?targetMotifMatchRegionMatch336 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01631338 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ACC7MF_01631329 .
?targetMotifMatchRegionMatch336 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01631337 .
?targetMotifMatchRegionMatchBeginMF_01631337 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01631330 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01631338 edam:has_input signature:MF_01631 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ACC7MF_01631327, 1, (STRLEN(?templateMotifCigarP0ACC7MF_01631327) - STRLEN(REPLACE(?templateMotifCigarP0ACC7MF_01631327, CONCAT('^(?:-*[^-]){', STR(((227 - ?templateMotifSequenceMatchBeginPositionP0ACC7328) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1339) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ACC7MF_01631329, 1, (STRLEN(?targetMotifMatchCigarP0ACC7MF_01631329) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACC7MF_01631329, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1339), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ACC7MF_01631329, 1, (STRLEN(?targetMotifMatchCigarP0ACC7MF_01631329) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACC7MF_01631329, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1339), '}'), '')))), '[^-]', ''))) AS ?step2340) .
BIND(((?step2340 + ?targetMotifMatchRegionMatchBeginPositionMF_01631330) - 1) AS ?thisPositionOn82) .
BIND(?thisPositionOn82 AS ?thisPositionOn83) .
BIND(?this AS ?pfs1t341) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn82))) AS ?pfsb79) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn83))) AS ?pfse80) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn82, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_01631a78')) AS ?annotation78) .
BIND(?this AS ?pfs77) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch346 faldo:location ?templateMotifSequenceMatchRegionP0ACC7347 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ACC7349 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ACC7MF_01631342 .
?templateMotifSequenceMatchRegionP0ACC7347 faldo:begin ?templateMotifSequenceMatchBeginP0ACC7348 .
?templateMotifSequenceMatchBeginP0ACC7348 faldo:position ?templateMotifSequenceMatchBeginPositionP0ACC7343 ;
faldo:reference isoform:P0ACC7-1 .
?templateMotifSequenceProfileAlignmentOperationP0ACC7349 edam:has_input signature:MF_01631 ;
rdf:type edam:operation_0300 .
?targetMotifMatch350 faldo:location ?targetMotifMatchRegionMatch351 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01631353 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ACC7MF_01631344 .
?targetMotifMatchRegionMatch351 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01631352 .
?targetMotifMatchRegionMatchBeginMF_01631352 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01631345 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01631353 edam:has_input signature:MF_01631 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ACC7MF_01631342, 1, (STRLEN(?templateMotifCigarP0ACC7MF_01631342) - STRLEN(REPLACE(?templateMotifCigarP0ACC7MF_01631342, CONCAT('^(?:-*[^-]){', STR(((25 - ?templateMotifSequenceMatchBeginPositionP0ACC7343) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1354) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ACC7MF_01631344, 1, (STRLEN(?targetMotifMatchCigarP0ACC7MF_01631344) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACC7MF_01631344, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1354), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ACC7MF_01631344, 1, (STRLEN(?targetMotifMatchCigarP0ACC7MF_01631344) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACC7MF_01631344, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1354), '}'), '')))), '[^-]', ''))) AS ?step2355) .
BIND(((?step2355 + ?targetMotifMatchRegionMatchBeginPositionMF_01631345) - 1) AS ?thisPositionOn89) .
BIND(?thisPositionOn89 AS ?thisPositionOn90) .
BIND(?this AS ?pfs1t356) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn89))) AS ?pfsb86) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn90))) AS ?pfse87) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn89, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01631a85')) AS ?annotation85) .
BIND(?this AS ?pfs84) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch361 faldo:location ?templateMotifSequenceMatchRegionP0ACC7362 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ACC7364 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ACC7MF_01631357 .
?templateMotifSequenceMatchRegionP0ACC7362 faldo:begin ?templateMotifSequenceMatchBeginP0ACC7363 .
?templateMotifSequenceMatchBeginP0ACC7363 faldo:position ?templateMotifSequenceMatchBeginPositionP0ACC7358 ;
faldo:reference isoform:P0ACC7-1 .
?templateMotifSequenceProfileAlignmentOperationP0ACC7364 edam:has_input signature:MF_01631 ;
rdf:type edam:operation_0300 .
?targetMotifMatch365 faldo:location ?targetMotifMatchRegionMatch366 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01631368 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ACC7MF_01631359 .
?targetMotifMatchRegionMatch366 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01631367 .
?targetMotifMatchRegionMatchBeginMF_01631367 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01631360 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01631368 edam:has_input signature:MF_01631 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ACC7MF_01631357, 1, (STRLEN(?templateMotifCigarP0ACC7MF_01631357) - STRLEN(REPLACE(?templateMotifCigarP0ACC7MF_01631357, CONCAT('^(?:-*[^-]){', STR(((76 - ?templateMotifSequenceMatchBeginPositionP0ACC7358) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1369) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ACC7MF_01631359, 1, (STRLEN(?targetMotifMatchCigarP0ACC7MF_01631359) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACC7MF_01631359, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1369), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ACC7MF_01631359, 1, (STRLEN(?targetMotifMatchCigarP0ACC7MF_01631359) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACC7MF_01631359, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1369), '}'), '')))), '[^-]', ''))) AS ?step2370) .
BIND(((?step2370 + ?targetMotifMatchRegionMatchBeginPositionMF_01631360) - 1) AS ?thisPositionOn96) .
BIND(?thisPositionOn96 AS ?thisPositionOn97) .
BIND(?this AS ?pfs1t371) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn96))) AS ?pfsb93) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn97))) AS ?pfse94) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn96, 1) = 'Q')) .
BIND(URI(CONCAT(STR(?this), '#MF_01631a92')) AS ?annotation92) .
BIND(?this AS ?pfs91) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch376 faldo:location ?templateMotifSequenceMatchRegionP0ACC7377 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ACC7379 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ACC7MF_01631372 .
?templateMotifSequenceMatchRegionP0ACC7377 faldo:begin ?templateMotifSequenceMatchBeginP0ACC7378 .
?templateMotifSequenceMatchBeginP0ACC7378 faldo:position ?templateMotifSequenceMatchBeginPositionP0ACC7373 ;
faldo:reference isoform:P0ACC7-1 .
?templateMotifSequenceProfileAlignmentOperationP0ACC7379 edam:has_input signature:MF_01631 ;
rdf:type edam:operation_0300 .
?targetMotifMatch380 faldo:location ?targetMotifMatchRegionMatch381 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01631383 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ACC7MF_01631374 .
?targetMotifMatchRegionMatch381 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01631382 .
?targetMotifMatchRegionMatchBeginMF_01631382 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01631375 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01631383 edam:has_input signature:MF_01631 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ACC7MF_01631372, 1, (STRLEN(?templateMotifCigarP0ACC7MF_01631372) - STRLEN(REPLACE(?templateMotifCigarP0ACC7MF_01631372, CONCAT('^(?:-*[^-]){', STR(((140 - ?templateMotifSequenceMatchBeginPositionP0ACC7373) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1384) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ACC7MF_01631374, 1, (STRLEN(?targetMotifMatchCigarP0ACC7MF_01631374) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACC7MF_01631374, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1384), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ACC7MF_01631374, 1, (STRLEN(?targetMotifMatchCigarP0ACC7MF_01631374) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACC7MF_01631374, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1384), '}'), '')))), '[^-]', ''))) AS ?step2385) .
BIND(((?step2385 + ?targetMotifMatchRegionMatchBeginPositionMF_01631375) - 1) AS ?thisPositionOn103) .
BIND(?thisPositionOn103 AS ?thisPositionOn104) .
BIND(?this AS ?pfs1t386) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn103))) AS ?pfsb100) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn104))) AS ?pfse101) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn103, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_01631a99')) AS ?annotation99) .
BIND(?this AS ?pfs98) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch391 faldo:location ?templateMotifSequenceMatchRegionP0ACC7392 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ACC7394 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ACC7MF_01631387 .
?templateMotifSequenceMatchRegionP0ACC7392 faldo:begin ?templateMotifSequenceMatchBeginP0ACC7393 .
?templateMotifSequenceMatchBeginP0ACC7393 faldo:position ?templateMotifSequenceMatchBeginPositionP0ACC7388 ;
faldo:reference isoform:P0ACC7-1 .
?templateMotifSequenceProfileAlignmentOperationP0ACC7394 edam:has_input signature:MF_01631 ;
rdf:type edam:operation_0300 .
?targetMotifMatch395 faldo:location ?targetMotifMatchRegionMatch396 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01631398 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ACC7MF_01631389 .
?targetMotifMatchRegionMatch396 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01631397 .
?targetMotifMatchRegionMatchBeginMF_01631397 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01631390 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01631398 edam:has_input signature:MF_01631 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ACC7MF_01631387, 1, (STRLEN(?templateMotifCigarP0ACC7MF_01631387) - STRLEN(REPLACE(?templateMotifCigarP0ACC7MF_01631387, CONCAT('^(?:-*[^-]){', STR(((154 - ?templateMotifSequenceMatchBeginPositionP0ACC7388) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1399) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ACC7MF_01631389, 1, (STRLEN(?targetMotifMatchCigarP0ACC7MF_01631389) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACC7MF_01631389, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1399), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ACC7MF_01631389, 1, (STRLEN(?targetMotifMatchCigarP0ACC7MF_01631389) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACC7MF_01631389, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1399), '}'), '')))), '[^-]', ''))) AS ?step2400) .
BIND(((?step2400 + ?targetMotifMatchRegionMatchBeginPositionMF_01631390) - 1) AS ?thisPositionOn110) .
BIND(?thisPositionOn110 AS ?thisPositionOn111) .
BIND(?this AS ?pfs1t401) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn110))) AS ?pfsb107) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn111))) AS ?pfse108) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn110, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01631a106')) AS ?annotation106) .
BIND(?this AS ?pfs105) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch406 faldo:location ?templateMotifSequenceMatchRegionP0ACC7407 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ACC7409 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ACC7MF_01631402 .
?templateMotifSequenceMatchRegionP0ACC7407 faldo:begin ?templateMotifSequenceMatchBeginP0ACC7408 .
?templateMotifSequenceMatchBeginP0ACC7408 faldo:position ?templateMotifSequenceMatchBeginPositionP0ACC7403 ;
faldo:reference isoform:P0ACC7-1 .
?templateMotifSequenceProfileAlignmentOperationP0ACC7409 edam:has_input signature:MF_01631 ;
rdf:type edam:operation_0300 .
?targetMotifMatch410 faldo:location ?targetMotifMatchRegionMatch411 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01631413 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ACC7MF_01631404 .
?targetMotifMatchRegionMatch411 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01631412 .
?targetMotifMatchRegionMatchBeginMF_01631412 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01631405 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01631413 edam:has_input signature:MF_01631 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ACC7MF_01631402, 1, (STRLEN(?templateMotifCigarP0ACC7MF_01631402) - STRLEN(REPLACE(?templateMotifCigarP0ACC7MF_01631402, CONCAT('^(?:-*[^-]){', STR(((169 - ?templateMotifSequenceMatchBeginPositionP0ACC7403) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1414) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ACC7MF_01631404, 1, (STRLEN(?targetMotifMatchCigarP0ACC7MF_01631404) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACC7MF_01631404, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1414), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ACC7MF_01631404, 1, (STRLEN(?targetMotifMatchCigarP0ACC7MF_01631404) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACC7MF_01631404, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1414), '}'), '')))), '[^-]', ''))) AS ?step2415) .
BIND(((?step2415 + ?targetMotifMatchRegionMatchBeginPositionMF_01631405) - 1) AS ?thisPositionOn117) .
BIND(?thisPositionOn117 AS ?thisPositionOn118) .
BIND(?this AS ?pfs1t416) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn117))) AS ?pfsb114) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn118))) AS ?pfse115) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn117, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_01631a113')) AS ?annotation113) .
BIND(?this AS ?pfs112) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch421 faldo:location ?templateMotifSequenceMatchRegionP0ACC7422 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ACC7424 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ACC7MF_01631417 .
?templateMotifSequenceMatchRegionP0ACC7422 faldo:begin ?templateMotifSequenceMatchBeginP0ACC7423 .
?templateMotifSequenceMatchBeginP0ACC7423 faldo:position ?templateMotifSequenceMatchBeginPositionP0ACC7418 ;
faldo:reference isoform:P0ACC7-1 .
?templateMotifSequenceProfileAlignmentOperationP0ACC7424 edam:has_input signature:MF_01631 ;
rdf:type edam:operation_0300 .
?targetMotifMatch425 faldo:location ?targetMotifMatchRegionMatch426 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01631428 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ACC7MF_01631419 .
?targetMotifMatchRegionMatch426 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01631427 .
?targetMotifMatchRegionMatchBeginMF_01631427 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01631420 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01631428 edam:has_input signature:MF_01631 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ACC7MF_01631417, 1, (STRLEN(?templateMotifCigarP0ACC7MF_01631417) - STRLEN(REPLACE(?templateMotifCigarP0ACC7MF_01631417, CONCAT('^(?:-*[^-]){', STR(((227 - ?templateMotifSequenceMatchBeginPositionP0ACC7418) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1429) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ACC7MF_01631419, 1, (STRLEN(?targetMotifMatchCigarP0ACC7MF_01631419) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACC7MF_01631419, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1429), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ACC7MF_01631419, 1, (STRLEN(?targetMotifMatchCigarP0ACC7MF_01631419) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACC7MF_01631419, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1429), '}'), '')))), '[^-]', ''))) AS ?step2430) .
BIND(((?step2430 + ?targetMotifMatchRegionMatchBeginPositionMF_01631420) - 1) AS ?thisPositionOn124) .
BIND(?thisPositionOn124 AS ?thisPositionOn125) .
BIND(?this AS ?pfs1t431) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn124))) AS ?pfsb121) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn125))) AS ?pfse122) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn124, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_01631a120')) AS ?annotation120) .
BIND(?this AS ?pfs119) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch436 faldo:location ?templateMotifSequenceMatchRegionP0ACC7437 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ACC7439 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ACC7MF_01631432 .
?templateMotifSequenceMatchRegionP0ACC7437 faldo:begin ?templateMotifSequenceMatchBeginP0ACC7438 .
?templateMotifSequenceMatchBeginP0ACC7438 faldo:position ?templateMotifSequenceMatchBeginPositionP0ACC7433 ;
faldo:reference isoform:P0ACC7-1 .
?templateMotifSequenceProfileAlignmentOperationP0ACC7439 edam:has_input signature:MF_01631 ;
rdf:type edam:operation_0300 .
?targetMotifMatch440 faldo:location ?targetMotifMatchRegionMatch441 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01631443 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ACC7MF_01631434 .
?targetMotifMatchRegionMatch441 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01631442 .
?targetMotifMatchRegionMatchBeginMF_01631442 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01631435 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01631443 edam:has_input signature:MF_01631 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ACC7MF_01631432, 1, (STRLEN(?templateMotifCigarP0ACC7MF_01631432) - STRLEN(REPLACE(?templateMotifCigarP0ACC7MF_01631432, CONCAT('^(?:-*[^-]){', STR(((333 - ?templateMotifSequenceMatchBeginPositionP0ACC7433) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1444) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ACC7MF_01631434, 1, (STRLEN(?targetMotifMatchCigarP0ACC7MF_01631434) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACC7MF_01631434, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1444), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ACC7MF_01631434, 1, (STRLEN(?targetMotifMatchCigarP0ACC7MF_01631434) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACC7MF_01631434, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1444), '}'), '')))), '[^-]', ''))) AS ?step2445) .
BIND(((?step2445 + ?targetMotifMatchRegionMatchBeginPositionMF_01631435) - 1) AS ?thisPositionOn131) .
BIND(?thisPositionOn131 AS ?thisPositionOn132) .
BIND(?this AS ?pfs1t446) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn131))) AS ?pfsb128) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn132))) AS ?pfse129) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn131, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01631a127')) AS ?annotation127) .
BIND(?this AS ?pfs126) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch451 faldo:location ?templateMotifSequenceMatchRegionP0ACC7452 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ACC7454 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ACC7MF_01631447 .
?templateMotifSequenceMatchRegionP0ACC7452 faldo:begin ?templateMotifSequenceMatchBeginP0ACC7453 .
?templateMotifSequenceMatchBeginP0ACC7453 faldo:position ?templateMotifSequenceMatchBeginPositionP0ACC7448 ;
faldo:reference isoform:P0ACC7-1 .
?templateMotifSequenceProfileAlignmentOperationP0ACC7454 edam:has_input signature:MF_01631 ;
rdf:type edam:operation_0300 .
?targetMotifMatch455 faldo:location ?targetMotifMatchRegionMatch456 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01631458 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ACC7MF_01631449 .
?targetMotifMatchRegionMatch456 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01631457 .
?targetMotifMatchRegionMatchBeginMF_01631457 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01631450 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01631458 edam:has_input signature:MF_01631 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ACC7MF_01631447, 1, (STRLEN(?templateMotifCigarP0ACC7MF_01631447) - STRLEN(REPLACE(?templateMotifCigarP0ACC7MF_01631447, CONCAT('^(?:-*[^-]){', STR(((351 - ?templateMotifSequenceMatchBeginPositionP0ACC7448) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1459) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ACC7MF_01631449, 1, (STRLEN(?targetMotifMatchCigarP0ACC7MF_01631449) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACC7MF_01631449, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1459), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ACC7MF_01631449, 1, (STRLEN(?targetMotifMatchCigarP0ACC7MF_01631449) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACC7MF_01631449, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1459), '}'), '')))), '[^-]', ''))) AS ?step2460) .
BIND(((?step2460 + ?targetMotifMatchRegionMatchBeginPositionMF_01631450) - 1) AS ?thisPositionOn138) .
BIND(?thisPositionOn138 AS ?thisPositionOn139) .
BIND(?this AS ?pfs1t461) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn138))) AS ?pfsb135) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn139))) AS ?pfse136) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn138, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01631a134')) AS ?annotation134) .
BIND(?this AS ?pfs133) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch466 faldo:location ?templateMotifSequenceMatchRegionP0ACC7467 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ACC7469 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ACC7MF_01631462 .
?templateMotifSequenceMatchRegionP0ACC7467 faldo:begin ?templateMotifSequenceMatchBeginP0ACC7468 .
?templateMotifSequenceMatchBeginP0ACC7468 faldo:position ?templateMotifSequenceMatchBeginPositionP0ACC7463 ;
faldo:reference isoform:P0ACC7-1 .
?templateMotifSequenceProfileAlignmentOperationP0ACC7469 edam:has_input signature:MF_01631 ;
rdf:type edam:operation_0300 .
?targetMotifMatch470 faldo:location ?targetMotifMatchRegionMatch471 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01631473 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ACC7MF_01631464 .
?targetMotifMatchRegionMatch471 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01631472 .
?targetMotifMatchRegionMatchBeginMF_01631472 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01631465 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01631473 edam:has_input signature:MF_01631 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ACC7MF_01631462, 1, (STRLEN(?templateMotifCigarP0ACC7MF_01631462) - STRLEN(REPLACE(?templateMotifCigarP0ACC7MF_01631462, CONCAT('^(?:-*[^-]){', STR(((366 - ?templateMotifSequenceMatchBeginPositionP0ACC7463) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1474) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ACC7MF_01631464, 1, (STRLEN(?targetMotifMatchCigarP0ACC7MF_01631464) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACC7MF_01631464, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1474), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ACC7MF_01631464, 1, (STRLEN(?targetMotifMatchCigarP0ACC7MF_01631464) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACC7MF_01631464, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1474), '}'), '')))), '[^-]', ''))) AS ?step2475) .
BIND(((?step2475 + ?targetMotifMatchRegionMatchBeginPositionMF_01631465) - 1) AS ?thisPositionOn145) .
BIND(?thisPositionOn145 AS ?thisPositionOn146) .
BIND(?this AS ?pfs1t476) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn145))) AS ?pfsb142) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn146))) AS ?pfse143) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn145, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_01631a141')) AS ?annotation141) .
BIND(?this AS ?pfs140) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch481 faldo:location ?templateMotifSequenceMatchRegionP0ACC7482 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ACC7484 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ACC7MF_01631477 .
?templateMotifSequenceMatchRegionP0ACC7482 faldo:begin ?templateMotifSequenceMatchBeginP0ACC7483 .
?templateMotifSequenceMatchBeginP0ACC7483 faldo:position ?templateMotifSequenceMatchBeginPositionP0ACC7478 ;
faldo:reference isoform:P0ACC7-1 .
?templateMotifSequenceProfileAlignmentOperationP0ACC7484 edam:has_input signature:MF_01631 ;
rdf:type edam:operation_0300 .
?targetMotifMatch485 faldo:location ?targetMotifMatchRegionMatch486 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01631488 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ACC7MF_01631479 .
?targetMotifMatchRegionMatch486 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01631487 .
?targetMotifMatchRegionMatchBeginMF_01631487 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01631480 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01631488 edam:has_input signature:MF_01631 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ACC7MF_01631477, 1, (STRLEN(?templateMotifCigarP0ACC7MF_01631477) - STRLEN(REPLACE(?templateMotifCigarP0ACC7MF_01631477, CONCAT('^(?:-*[^-]){', STR(((377 - ?templateMotifSequenceMatchBeginPositionP0ACC7478) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1489) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ACC7MF_01631479, 1, (STRLEN(?targetMotifMatchCigarP0ACC7MF_01631479) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACC7MF_01631479, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1489), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ACC7MF_01631479, 1, (STRLEN(?targetMotifMatchCigarP0ACC7MF_01631479) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACC7MF_01631479, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1489), '}'), '')))), '[^-]', ''))) AS ?step2490) .
BIND(((?step2490 + ?targetMotifMatchRegionMatchBeginPositionMF_01631480) - 1) AS ?thisPositionOn152) .
BIND(?thisPositionOn152 AS ?thisPositionOn153) .
BIND(?this AS ?pfs1t491) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn152))) AS ?pfsb149) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn153))) AS ?pfse150) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn152, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_01631a148')) AS ?annotation148) .
BIND(?this AS ?pfs147) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch496 faldo:location ?templateMotifSequenceMatchRegionP0ACC7497 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ACC7499 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ACC7MF_01631492 .
?templateMotifSequenceMatchRegionP0ACC7497 faldo:begin ?templateMotifSequenceMatchBeginP0ACC7498 .
?templateMotifSequenceMatchBeginP0ACC7498 faldo:position ?templateMotifSequenceMatchBeginPositionP0ACC7493 ;
faldo:reference isoform:P0ACC7-1 .
?templateMotifSequenceProfileAlignmentOperationP0ACC7499 edam:has_input signature:MF_01631 ;
rdf:type edam:operation_0300 .
?targetMotifMatch500 faldo:location ?targetMotifMatchRegionMatch501 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01631503 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ACC7MF_01631494 .
?targetMotifMatchRegionMatch501 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01631502 .
?targetMotifMatchRegionMatchBeginMF_01631502 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01631495 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01631503 edam:has_input signature:MF_01631 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ACC7MF_01631492, 1, (STRLEN(?templateMotifCigarP0ACC7MF_01631492) - STRLEN(REPLACE(?templateMotifCigarP0ACC7MF_01631492, CONCAT('^(?:-*[^-]){', STR(((380 - ?templateMotifSequenceMatchBeginPositionP0ACC7493) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1504) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ACC7MF_01631494, 1, (STRLEN(?targetMotifMatchCigarP0ACC7MF_01631494) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACC7MF_01631494, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1504), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ACC7MF_01631494, 1, (STRLEN(?targetMotifMatchCigarP0ACC7MF_01631494) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACC7MF_01631494, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1504), '}'), '')))), '[^-]', ''))) AS ?step2505) .
BIND(((?step2505 + ?targetMotifMatchRegionMatchBeginPositionMF_01631495) - 1) AS ?thisPositionOn159) .
BIND(?thisPositionOn159 AS ?thisPositionOn160) .
BIND(?this AS ?pfs1t506) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn159))) AS ?pfsb156) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn160))) AS ?pfse157) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn159, 1) = 'A')) .
BIND(URI(CONCAT(STR(?this), '#MF_01631a155')) AS ?annotation155) .
BIND(?this AS ?pfs154) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch511 faldo:location ?templateMotifSequenceMatchRegionP0ACC7512 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ACC7514 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ACC7MF_01631507 .
?templateMotifSequenceMatchRegionP0ACC7512 faldo:begin ?templateMotifSequenceMatchBeginP0ACC7513 .
?templateMotifSequenceMatchBeginP0ACC7513 faldo:position ?templateMotifSequenceMatchBeginPositionP0ACC7508 ;
faldo:reference isoform:P0ACC7-1 .
?templateMotifSequenceProfileAlignmentOperationP0ACC7514 edam:has_input signature:MF_01631 ;
rdf:type edam:operation_0300 .
?targetMotifMatch515 faldo:location ?targetMotifMatchRegionMatch516 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01631518 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ACC7MF_01631509 .
?targetMotifMatchRegionMatch516 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01631517 .
?targetMotifMatchRegionMatchBeginMF_01631517 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01631510 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01631518 edam:has_input signature:MF_01631 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ACC7MF_01631507, 1, (STRLEN(?templateMotifCigarP0ACC7MF_01631507) - STRLEN(REPLACE(?templateMotifCigarP0ACC7MF_01631507, CONCAT('^(?:-*[^-]){', STR(((405 - ?templateMotifSequenceMatchBeginPositionP0ACC7508) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1519) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ACC7MF_01631509, 1, (STRLEN(?targetMotifMatchCigarP0ACC7MF_01631509) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACC7MF_01631509, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1519), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ACC7MF_01631509, 1, (STRLEN(?targetMotifMatchCigarP0ACC7MF_01631509) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACC7MF_01631509, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1519), '}'), '')))), '[^-]', ''))) AS ?step2520) .
BIND(((?step2520 + ?targetMotifMatchRegionMatchBeginPositionMF_01631510) - 1) AS ?thisPositionOn166) .
BIND(?thisPositionOn166 AS ?thisPositionOn167) .
BIND(?this AS ?pfs1t521) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn166))) AS ?pfsb163) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn167))) AS ?pfse164) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn166, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_01631a162')) AS ?annotation162) .
BIND(?this AS ?pfs161) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch526 faldo:location ?templateMotifSequenceMatchRegionP0ACC7527 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ACC7529 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ACC7MF_01631522 .
?templateMotifSequenceMatchRegionP0ACC7527 faldo:begin ?templateMotifSequenceMatchBeginP0ACC7528 .
?templateMotifSequenceMatchBeginP0ACC7528 faldo:position ?templateMotifSequenceMatchBeginPositionP0ACC7523 ;
faldo:reference isoform:P0ACC7-1 .
?templateMotifSequenceProfileAlignmentOperationP0ACC7529 edam:has_input signature:MF_01631 ;
rdf:type edam:operation_0300 .
?targetMotifMatch530 faldo:location ?targetMotifMatchRegionMatch531 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01631533 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ACC7MF_01631524 .
?targetMotifMatchRegionMatch531 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01631532 .
?targetMotifMatchRegionMatchBeginMF_01631532 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01631525 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01631533 edam:has_input signature:MF_01631 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ACC7MF_01631522, 1, (STRLEN(?templateMotifCigarP0ACC7MF_01631522) - STRLEN(REPLACE(?templateMotifCigarP0ACC7MF_01631522, CONCAT('^(?:-*[^-]){', STR(((423 - ?templateMotifSequenceMatchBeginPositionP0ACC7523) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1534) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ACC7MF_01631524, 1, (STRLEN(?targetMotifMatchCigarP0ACC7MF_01631524) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACC7MF_01631524, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1534), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ACC7MF_01631524, 1, (STRLEN(?targetMotifMatchCigarP0ACC7MF_01631524) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACC7MF_01631524, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1534), '}'), '')))), '[^-]', ''))) AS ?step2535) .
BIND(((?step2535 + ?targetMotifMatchRegionMatchBeginPositionMF_01631525) - 1) AS ?thisPositionOn173) .
BIND(?thisPositionOn173 AS ?thisPositionOn174) .
BIND(?this AS ?pfs1t536) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn173))) AS ?pfsb170) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn174))) AS ?pfse171) .
FILTER (REGEX('[ACGST]', SUBSTR(?thisSequenceValue, ?thisPositionOn173, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01631a169')) AS ?annotation169) .
BIND(?this AS ?pfs168) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch541 faldo:location ?templateMotifSequenceMatchRegionP0ACC7542 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ACC7544 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ACC7MF_01631537 .
?templateMotifSequenceMatchRegionP0ACC7542 faldo:begin ?templateMotifSequenceMatchBeginP0ACC7543 .
?templateMotifSequenceMatchBeginP0ACC7543 faldo:position ?templateMotifSequenceMatchBeginPositionP0ACC7538 ;
faldo:reference isoform:P0ACC7-1 .
?templateMotifSequenceProfileAlignmentOperationP0ACC7544 edam:has_input signature:MF_01631 ;
rdf:type edam:operation_0300 .
?targetMotifMatch545 faldo:location ?targetMotifMatchRegionMatch546 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01631548 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ACC7MF_01631539 .
?targetMotifMatchRegionMatch546 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01631547 .
?targetMotifMatchRegionMatchBeginMF_01631547 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01631540 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01631548 edam:has_input signature:MF_01631 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ACC7MF_01631537, 1, (STRLEN(?templateMotifCigarP0ACC7MF_01631537) - STRLEN(REPLACE(?templateMotifCigarP0ACC7MF_01631537, CONCAT('^(?:-*[^-]){', STR(((440 - ?templateMotifSequenceMatchBeginPositionP0ACC7538) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1549) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ACC7MF_01631539, 1, (STRLEN(?targetMotifMatchCigarP0ACC7MF_01631539) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACC7MF_01631539, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1549), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ACC7MF_01631539, 1, (STRLEN(?targetMotifMatchCigarP0ACC7MF_01631539) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACC7MF_01631539, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1549), '}'), '')))), '[^-]', ''))) AS ?step2550) .
BIND(((?step2550 + ?targetMotifMatchRegionMatchBeginPositionMF_01631540) - 1) AS ?thisPositionOn180) .
BIND(?thisPositionOn180 AS ?thisPositionOn181) .
BIND(?this AS ?pfs1t551) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn180))) AS ?pfsb177) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn181))) AS ?pfse178) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn180, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01631a176')) AS ?annotation176) .
BIND(?this AS ?pfs175) .
}
}
"xsd:string |
