| http://purl.uniprot.org/unirules/MF_04079#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
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?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation5 ,
?annotation6 ,
?annotation10 ,
?annotation11 ,
?annotation12 ,
?annotation13 ,
?annotation14 ,
?annotation15 ,
?annotation16 ,
?annotation17 ,
?annotation18 ,
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up:classifiedWith GO:0001070 ,
GO:0005576 ,
GO:0006351 ,
GO:0010801 ,
GO:0019904 ,
GO:0030332 ,
GO:0030430 ,
GO:0032968 ,
GO:0039502 ,
GO:0039525 ,
GO:0042025 ,
GO:0042805 ,
GO:0044196 ,
GO:0046872 ,
GO:0050434 ,
GO:1990970 ,
keyword:1017 ,
keyword:1035 ,
keyword:1048 ,
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keyword:10 ,
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keyword:479 ,
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keyword:694 ,
keyword:7 ,
keyword:804 ,
keyword:805 ,
keyword:832 ,
keyword:862 ,
keyword:899 ,
keyword:945 ,
keyword:964 ;
up:recommendedName ?name0 .
?name0 up:fullName 'Protein Tat' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Transactivating regulatory protein' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'tat' .
?annotation3 a up:Function_Annotation ;
rdfs:comment "Transcriptional activator that increases RNA Pol II processivity, thereby increasing the level of full-length viral transcripts. Recognizes a hairpin structure at the 5'-LTR of the nascent viral mRNAs referred to as the transactivation responsive RNA element (TAR) and recruits the cyclin T1-CDK9 complex (P-TEFb complex) that will in turn hyperphosphorylate the RNA polymerase II to allow efficient elongation. The CDK9 component of P-TEFb and other Tat-activated kinases hyperphosphorylate the C-terminus of RNA Pol II that becomes stabilized and much more processive. Other factors such as HTATSF1/Tat-SF1, SUPT5H/SPT5, and HTATIP2 are also important for Tat's function. Besides its effect on RNA Pol II processivity, Tat induces chromatin remodeling of proviral genes by recruiting the histone acetyltransferases (HATs) CREBBP, EP300 and PCAF to the chromatin. This also contributes to the increase in proviral transcription rate, especially when the provirus integrates in transcriptionally silent region of the host genome. To ensure maximal activation of the LTR, Tat mediates nuclear translocation of NF-kappa-B by interacting with host RELA. Through its interaction with host TBP, Tat may also modulate transcription initiation. Tat can reactivate a latently infected cell by penetrating in it and transactivating its LTR promoter. In the cytoplasm, Tat is thought to act as a translational activator of HIV-1 mRNAs." .
?annotation4 a up:Function_Annotation ;
rdfs:comment 'Extracellular circulating Tat can be endocytosed by surrounding uninfected cells via the binding to several surface receptors such as CD26, CXCR4, heparan sulfate proteoglycans (HSPG) or LDLR. Neurons are rarely infected, but they internalize Tat via their LDLR. Through its interaction with nuclear HATs, Tat is potentially able to control the acetylation-dependent cellular gene expression. Modulates the expression of many cellular genes involved in cell survival, proliferation or in coding for cytokines or cytokine receptors. Tat plays a role in T-cell and neurons apoptosis. Tat induced neurotoxicity and apoptosis probably contribute to neuroAIDS. Circulating Tat also acts as a chemokine-like and/or growth factor-like molecule that binds to specific receptors on the surface of the cells, affecting many cellular pathways. In the vascular system, Tat binds to ITGAV/ITGB3 and ITGA5/ITGB1 integrins dimers at the surface of endothelial cells and competes with bFGF for heparin-binding sites, leading to an excess of soluble bFGF.' .
?annotation5 a up:Subunit_Annotation ;
rdfs:comment "Interacts with host CCNT1. Associates with the P-TEFb complex composed at least of Tat, P-TEFb (CDK9 and CCNT1), TAR RNA, RNA Pol II. Recruits the HATs CREBBP, TAF1/TFIID, EP300, PCAF and GCN5L2. Interacts with host KAT5/Tip60; this interaction targets the latter to degradation. Interacts with the host deacetylase SIRT1. Interacts with host capping enzyme RNGTT; this interaction stimulates RNGTT. Binds to host KDR, and to the host integrins ITGAV/ITGB3 and ITGA5/ITGB1. Interacts with host KPNB1/importin beta-1 without previous binding to KPNA1/importin alpha-1. Interacts with EIF2AK2. Interacts with host nucleosome assembly protein NAP1L1; this interaction may be required for the transport of Tat within the nucleus, since the two proteins interact at the nuclear rim. Interacts with host C1QBP/SF2P32; this interaction involves lysine-acetylated Tat. Interacts with the host chemokine receptors CCR2, CCR3 and CXCR4. Interacts with host DPP4/CD26; this interaction may trigger an anti-proliferative effect. Interacts with host LDLR. Interacts with the host extracellular matrix metalloproteinase MMP1. Interacts with host PRMT6; this interaction mediates Tat's methylation. Interacts with, and is ubiquitinated by MDM2/Hdm2. Interacts with host PSMC3 and HTATIP2. Interacts with STAB1; this interaction may overcome SATB1-mediated repression of IL2 and IL2RA (interleukin) in T cells by binding to the same domain than HDAC1. Interacts (when acetylated) with human CDK13, thereby increasing HIV-1 mRNA splicing and promoting the production of the doubly spliced HIV-1 protein Nef.Interacts with host TBP; this interaction modulates the activity of transcriptional pre-initiation complex. Interacts with host RELA." .
?annotation6 a up:Subcellular_Location_Annotation ;
rdfs:comment 'Probably localizes to both nuclear and nucleolar compartments. Nuclear localization is mediated through the interaction of the nuclear localization signal with importin KPNB1. Secretion occurs through a Golgi-independent pathway. Tat is released from infected cells to the extracellular space where it remains associated to the cell membrane, or is secreted into the cerebrospinal fluid and sera. Extracellular Tat can be endocytosed by surrounding uninfected cells via binding to several receptors depending on the cell type' .
?annotation6li7 up:cellularComponent .
?annotation6li8 up:cellularComponent .
?annotation6li9 up:cellularComponent .
?annotation10 a up:Domain_Annotation ;
rdfs:comment 'The transactivation domain mediates the interaction with CCNT1, GCN5L2, and MDM2.' .
?annotation11 a up:Domain_Annotation ;
rdfs:comment "The Arg-rich RNA-binding region binds the TAR RNA. This region also mediates the nuclear localization through direct binding to KPNB1 and is involved in Tat's transfer across cell membranes (protein transduction). The same region is required for the interaction with EP300, PCAF, EIF2AK2 and KDR." .
?annotation12 a up:Domain_Annotation ;
rdfs:comment 'The Cys-rich region may bind 2 zinc ions. This region is involved in binding to KAT5.' .
?annotation13 a up:Domain_Annotation ;
rdfs:comment 'The cell attachment site mediates the interaction with ITGAV/ITGB3 and ITGA5/ITGB1 integrins, leading to vascular cell migration and invasion. This interaction also provides endothelial cells with the adhesion signal they require to grow in response to mitogens.' .
?annotation14 a up:PTM_Annotation ;
rdfs:comment "Acetylation by EP300, CREBBP, GCN5L2/GCN5 and PCAF regulates the transactivation activity of Tat. EP300-mediated acetylation of Lys-50 promotes dissociation of Tat from the TAR RNA through the competitive binding to PCAF's bromodomain. In addition, the non-acetylated Tat's N-terminus can also interact with PCAF. PCAF-mediated acetylation of Lys-28 enhances Tat's binding to CCNT1. Lys-50 is deacetylated by SIRT1." .
?annotation15 a up:PTM_Annotation ;
rdfs:comment 'Phosphorylated by EIF2AK2 on serine and threonine residues adjacent to the basic region important for TAR RNA binding and function. Phosphorylation of Tat by EIF2AK2 is dependent on the prior activation of EIF2AK2 by dsRNA.' .
?annotation16 a up:PTM_Annotation ;
rdfs:comment 'Asymmetrical arginine methylation by host PRMT6 seems to diminish the transactivation capacity of Tat and affects the interaction with host CCNT1.' .
?annotation17 a up:PTM_Annotation ;
rdfs:comment 'Polyubiquitination by host MDM2 does not target Tat to degradation, but activates its transactivation function and fosters interaction with CCNT1 and TAR RNA.' .
?annotation18 a up:Annotation ;
rdfs:comment 'HIV-1 lineages are divided in three main groups, M (for Major), O (for Outlier), and N (for New, or Non-M, Non-O). The vast majority of strains found worldwide belong to the group M. Group O seems to be endemic to and largely confined to Cameroon and neighboring countries in West Central Africa, where these viruses represent a small minority of HIV-1 strains. The group N is represented by a limited number of isolates from Cameroonian persons. The group M is further subdivided in 9 clades or subtypes (A to D, F to H, J and K).' .
?annotation19 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the lentiviruses Tat family.' .
?pfs20 up:annotation ?annotation21 .
?annotation21 faldo:begin ?pfsb22 ;
faldo:end ?pfse23 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Transactivation' .
?pfsb22 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfse23 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?pfs26 up:annotation ?annotation27 .
?annotation27 faldo:begin ?pfsb28 ;
faldo:end ?pfse29 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Interaction with human CREBBP' .
?pfsb28 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?pfse29 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?pfs32 up:annotation ?annotation33 .
?annotation33 faldo:begin ?pfsb34 ;
faldo:end ?pfse35 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Cysteine-rich' .
?pfsb34 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?pfse35 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?pfs38 up:annotation ?annotation39 .
?annotation39 faldo:begin ?pfsb40 ;
faldo:end ?pfse41 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Core' .
?pfsb40 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?pfse41 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?pfs44 up:annotation ?annotation45 .
?annotation45 faldo:begin ?pfsb46 ;
faldo:end ?pfse47 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Interaction with the host capping enzyme RNGTT' .
?pfsb46 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?pfse47 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?pfs50 up:annotation ?annotation51 .
?annotation51 faldo:begin ?pfsb52 ;
faldo:end ?pfse53 ;
rdf:type up:Motif_Annotation ;
rdfs:comment 'Nuclear localization signal, RNA-binding (TAR), and protein transduction' .
?pfsb52 faldo:position ?thisPositionOn54 ;
rdf:type faldo:ExactPosition .
?pfse53 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
?pfs56 up:annotation ?annotation57 .
?annotation57 faldo:begin ?pfsb58 ;
faldo:end ?pfse59 ;
rdf:type up:Motif_Annotation ;
rdfs:comment 'Cell attachment site' .
?pfsb58 faldo:position ?thisPositionOn60 ;
rdf:type faldo:ExactPosition .
?pfse59 faldo:position ?thisPositionOn61 ;
rdf:type faldo:ExactPosition .
?pfs62 up:annotation ?annotation63 .
?annotation63 faldo:begin ?pfsb64 ;
faldo:end ?pfse65 ;
up:ligand ?ligand66 ;
rdf:type up:Binding_Site_Annotation .
?pfsb64 faldo:position ?thisPositionOn67 ;
rdf:type faldo:ExactPosition .
?pfse65 faldo:position ?thisPositionOn68 ;
rdf:type faldo:ExactPosition .
?ligand66 rdfs:subClassOf chebi:29105 .
?pfs69 up:annotation ?annotation70 .
?annotation70 faldo:begin ?pfsb71 ;
faldo:end ?pfse72 ;
up:ligand ?ligand73 ;
rdf:type up:Binding_Site_Annotation .
?pfsb71 faldo:position ?thisPositionOn74 ;
rdf:type faldo:ExactPosition .
?pfse72 faldo:position ?thisPositionOn75 ;
rdf:type faldo:ExactPosition .
?ligand73 rdfs:subClassOf chebi:29105 .
?pfs76 up:annotation ?annotation77 .
?annotation77 faldo:begin ?pfsb78 ;
faldo:end ?pfse79 ;
up:ligand ?ligand80 ;
rdf:type up:Binding_Site_Annotation .
?pfsb78 faldo:position ?thisPositionOn81 ;
rdf:type faldo:ExactPosition .
?pfse79 faldo:position ?thisPositionOn82 ;
rdf:type faldo:ExactPosition .
?ligand80 rdfs:subClassOf chebi:29105 .
?pfs83 up:annotation ?annotation84 .
?annotation84 faldo:begin ?pfsb85 ;
faldo:end ?pfse86 ;
up:ligand ?ligand87 ;
rdf:type up:Binding_Site_Annotation .
?pfsb85 faldo:position ?thisPositionOn88 ;
rdf:type faldo:ExactPosition .
?pfse86 faldo:position ?thisPositionOn89 ;
rdf:type faldo:ExactPosition .
?ligand87 rdfs:subClassOf chebi:29105 .
?pfs90 up:annotation ?annotation91 .
?annotation91 faldo:begin ?pfsb92 ;
faldo:end ?pfse93 ;
up:ligand ?ligand94 ;
rdf:type up:Binding_Site_Annotation .
?pfsb92 faldo:position ?thisPositionOn95 ;
rdf:type faldo:ExactPosition .
?pfse93 faldo:position ?thisPositionOn96 ;
rdf:type faldo:ExactPosition .
?ligand94 rdfs:subClassOf chebi:29105 .
?pfs97 up:annotation ?annotation98 .
?annotation98 faldo:begin ?pfsb99 ;
faldo:end ?pfse100 ;
up:ligand ?ligand101 ;
rdf:type up:Binding_Site_Annotation .
?pfsb99 faldo:position ?thisPositionOn102 ;
rdf:type faldo:ExactPosition .
?pfse100 faldo:position ?thisPositionOn103 ;
rdf:type faldo:ExactPosition .
?ligand101 rdfs:subClassOf chebi:29105 .
?pfs104 up:annotation ?annotation105 .
?annotation105 faldo:begin ?pfsb106 ;
faldo:end ?pfse107 ;
up:ligand ?ligand108 ;
rdf:type up:Binding_Site_Annotation .
?pfsb106 faldo:position ?thisPositionOn109 ;
rdf:type faldo:ExactPosition .
?pfse107 faldo:position ?thisPositionOn110 ;
rdf:type faldo:ExactPosition .
?ligand108 rdfs:subClassOf chebi:29105 .
?pfs111 up:annotation ?annotation112 .
?annotation112 faldo:begin ?pfsb113 ;
faldo:end ?pfse114 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Essential for Tat translocation through the endosomal membrane' .
?pfsb113 faldo:position ?thisPositionOn115 ;
rdf:type faldo:ExactPosition .
?pfse114 faldo:position ?thisPositionOn116 ;
rdf:type faldo:ExactPosition .
?pfs117 up:annotation ?annotation118 .
?annotation118 faldo:begin ?pfsb119 ;
faldo:end ?pfse120 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'N6-acetyllysine; by host PCAF' .
?pfsb119 faldo:position ?thisPositionOn121 ;
rdf:type faldo:ExactPosition .
?pfse120 faldo:position ?thisPositionOn122 ;
rdf:type faldo:ExactPosition .
?pfs123 up:annotation ?annotation124 .
?annotation124 faldo:begin ?pfsb125 ;
faldo:end ?pfse126 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'N6-acetyllysine; by host EP300 and GCN5L2' .
?pfsb125 faldo:position ?thisPositionOn127 ;
rdf:type faldo:ExactPosition .
?pfse126 faldo:position ?thisPositionOn128 ;
rdf:type faldo:ExactPosition .
?pfs129 up:annotation ?annotation130 .
?annotation130 faldo:begin ?pfsb131 ;
faldo:end ?pfse132 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'N6-acetyllysine; by host EP300 and GCN5L2' .
?pfsb131 faldo:position ?thisPositionOn133 ;
rdf:type faldo:ExactPosition .
?pfse132 faldo:position ?thisPositionOn134 ;
rdf:type faldo:ExactPosition .
?pfs135 up:annotation ?annotation136 .
?annotation136 faldo:begin ?pfsb137 ;
faldo:end ?pfse138 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Asymmetric dimethylarginine; by host PRMT6' .
?pfsb137 faldo:position ?thisPositionOn139 ;
rdf:type faldo:ExactPosition .
?pfse138 faldo:position ?thisPositionOn140 ;
rdf:type faldo:ExactPosition .
?pfs141 up:annotation ?annotation142 .
?annotation142 faldo:begin ?pfsb143 ;
faldo:end ?pfse144 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Asymmetric dimethylarginine; by host PRMT6' .
?pfsb143 faldo:position ?thisPositionOn145 ;
rdf:type faldo:ExactPosition .
?pfse144 faldo:position ?thisPositionOn146 ;
rdf:type faldo:ExactPosition .
?pfs147 up:annotation ?annotation148 .
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faldo:end ?pfse150 ;
rdf:type up:Cross-link_Annotation ;
rdfs:comment 'Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)' .
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rdf:type faldo:ExactPosition .
?pfse150 faldo:position ?thisPositionOn152 ;
rdf:type faldo:ExactPosition .
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rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1122 .
_:934955 a rdf:Statement ;
up:attribution _:934880 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1126 .
_:934956 a rdf:Statement ;
up:attribution _:934881 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:597 .
_:934957 a rdf:Statement ;
up:attribution _:934882 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:694 .
_:934958 a rdf:Statement ;
up:attribution _:934883 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:964 .
_:934959 a rdf:Statement ;
up:attribution _:934884 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:804 .
_:934960 a rdf:Statement ;
up:attribution _:934885 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:805 .
_:934961 a rdf:Statement ;
up:attribution _:934886 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:832 .
_:934962 a rdf:Statement ;
up:attribution _:934887 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:899 .
_:934963 a rdf:Statement ;
up:attribution _:934888 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:862 .
_:934964 a rdf:Statement ;
up:attribution _:934889 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005576 .
_:934965 a rdf:Statement ;
up:attribution _:934890 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0030430 .
_:934966 a rdf:Statement ;
up:attribution _:934891 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0044196 .
_:934967 a rdf:Statement ;
up:attribution _:934892 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0042025 .
_:934968 a rdf:Statement ;
up:attribution _:934893 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0042805 .
_:934969 a rdf:Statement ;
up:attribution _:934894 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0030332 .
_:934970 a rdf:Statement ;
up:attribution _:934895 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0046872 .
_:934971 a rdf:Statement ;
up:attribution _:934896 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019904 .
_:934972 a rdf:Statement ;
up:attribution _:934897 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0001070 .
_:934973 a rdf:Statement ;
up:attribution _:934898 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:1990970 .
_:934974 a rdf:Statement ;
up:attribution _:934899 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0039525 .
_:934975 a rdf:Statement ;
up:attribution _:934900 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0010801 .
_:934976 a rdf:Statement ;
up:attribution _:934901 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0032968 .
_:934977 a rdf:Statement ;
up:attribution _:934902 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0050434 .
_:934978 a rdf:Statement ;
up:attribution _:934903 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0039502 .
_:934979 a rdf:Statement ;
up:attribution _:934904 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006351 .
_:934980 a rdf:Statement ;
up:source unirule:MF_04079 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:934981 a rdf:Statement ;
up:attribution _:934905 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:934982 a rdf:Statement ;
up:source unirule:MF_04079 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:934983 a rdf:Statement ;
up:attribution _:934906 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:934984 a rdf:Statement ;
up:source unirule:MF_04079 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:934985 a rdf:Statement ;
up:attribution _:934907 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:934986 a rdf:Statement ;
up:source unirule:MF_04079 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:934987 a rdf:Statement ;
up:attribution _:934908 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:934988 a rdf:Statement ;
up:source unirule:MF_04079 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:934989 a rdf:Statement ;
up:attribution _:934909 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:934990 a rdf:Statement ;
up:source unirule:MF_04079 ;
rdf:subject ?pfs50 ;
rdf:predicate up:annotation ;
rdf:object ?annotation51 .
_:934991 a rdf:Statement ;
up:attribution _:934910 ;
rdf:subject ?pfs50 ;
rdf:predicate up:annotation ;
rdf:object ?annotation51 .
_:934992 a rdf:Statement ;
up:source unirule:MF_04079 ;
rdf:subject ?pfs56 ;
rdf:predicate up:annotation ;
rdf:object ?annotation57 .
_:934993 a rdf:Statement ;
up:attribution _:934911 ;
rdf:subject ?pfs56 ;
rdf:predicate up:annotation ;
rdf:object ?annotation57 .
_:934994 a rdf:Statement ;
up:source unirule:MF_04079 ;
rdf:subject ?pfs62 ;
rdf:predicate up:annotation ;
rdf:object ?annotation63 .
_:934995 a rdf:Statement ;
up:attribution _:934912 ;
rdf:subject ?pfs62 ;
rdf:predicate up:annotation ;
rdf:object ?annotation63 .
_:934996 a rdf:Statement ;
up:source unirule:MF_04079 ;
rdf:subject ?pfs69 ;
rdf:predicate up:annotation ;
rdf:object ?annotation70 .
_:934997 a rdf:Statement ;
up:attribution _:934913 ;
rdf:subject ?pfs69 ;
rdf:predicate up:annotation ;
rdf:object ?annotation70 .
_:934998 a rdf:Statement ;
up:source unirule:MF_04079 ;
rdf:subject ?pfs76 ;
rdf:predicate up:annotation ;
rdf:object ?annotation77 .
_:934999 a rdf:Statement ;
up:attribution _:934914 ;
rdf:subject ?pfs76 ;
rdf:predicate up:annotation ;
rdf:object ?annotation77 .
_:935000 a rdf:Statement ;
up:source unirule:MF_04079 ;
rdf:subject ?pfs83 ;
rdf:predicate up:annotation ;
rdf:object ?annotation84 .
_:935001 a rdf:Statement ;
up:attribution _:934915 ;
rdf:subject ?pfs83 ;
rdf:predicate up:annotation ;
rdf:object ?annotation84 .
_:935002 a rdf:Statement ;
up:source unirule:MF_04079 ;
rdf:subject ?pfs90 ;
rdf:predicate up:annotation ;
rdf:object ?annotation91 .
_:935003 a rdf:Statement ;
up:attribution _:934916 ;
rdf:subject ?pfs90 ;
rdf:predicate up:annotation ;
rdf:object ?annotation91 .
_:935004 a rdf:Statement ;
up:source unirule:MF_04079 ;
rdf:subject ?pfs97 ;
rdf:predicate up:annotation ;
rdf:object ?annotation98 .
_:935005 a rdf:Statement ;
up:attribution _:934917 ;
rdf:subject ?pfs97 ;
rdf:predicate up:annotation ;
rdf:object ?annotation98 .
_:935006 a rdf:Statement ;
up:source unirule:MF_04079 ;
rdf:subject ?pfs104 ;
rdf:predicate up:annotation ;
rdf:object ?annotation105 .
_:935007 a rdf:Statement ;
up:attribution _:934918 ;
rdf:subject ?pfs104 ;
rdf:predicate up:annotation ;
rdf:object ?annotation105 .
_:935008 a rdf:Statement ;
up:source unirule:MF_04079 ;
rdf:subject ?pfs111 ;
rdf:predicate up:annotation ;
rdf:object ?annotation112 .
_:935009 a rdf:Statement ;
up:attribution _:934919 ;
rdf:subject ?pfs111 ;
rdf:predicate up:annotation ;
rdf:object ?annotation112 .
_:935010 a rdf:Statement ;
up:source unirule:MF_04079 ;
rdf:subject ?pfs117 ;
rdf:predicate up:annotation ;
rdf:object ?annotation118 .
_:935011 a rdf:Statement ;
up:attribution _:934920 ;
rdf:subject ?pfs117 ;
rdf:predicate up:annotation ;
rdf:object ?annotation118 .
_:935012 a rdf:Statement ;
up:source unirule:MF_04079 ;
rdf:subject ?pfs123 ;
rdf:predicate up:annotation ;
rdf:object ?annotation124 .
_:935013 a rdf:Statement ;
up:attribution _:934921 ;
rdf:subject ?pfs123 ;
rdf:predicate up:annotation ;
rdf:object ?annotation124 .
_:935014 a rdf:Statement ;
up:source unirule:MF_04079 ;
rdf:subject ?pfs129 ;
rdf:predicate up:annotation ;
rdf:object ?annotation130 .
_:935015 a rdf:Statement ;
up:attribution _:934922 ;
rdf:subject ?pfs129 ;
rdf:predicate up:annotation ;
rdf:object ?annotation130 .
_:935016 a rdf:Statement ;
up:source unirule:MF_04079 ;
rdf:subject ?pfs135 ;
rdf:predicate up:annotation ;
rdf:object ?annotation136 .
_:935017 a rdf:Statement ;
up:attribution _:934923 ;
rdf:subject ?pfs135 ;
rdf:predicate up:annotation ;
rdf:object ?annotation136 .
_:935018 a rdf:Statement ;
up:source unirule:MF_04079 ;
rdf:subject ?pfs141 ;
rdf:predicate up:annotation ;
rdf:object ?annotation142 .
_:935019 a rdf:Statement ;
up:attribution _:934924 ;
rdf:subject ?pfs141 ;
rdf:predicate up:annotation ;
rdf:object ?annotation142 .
_:935020 a rdf:Statement ;
up:source unirule:MF_04079 ;
rdf:subject ?pfs147 ;
rdf:predicate up:annotation ;
rdf:object ?annotation148 .
_:935021 a rdf:Statement ;
up:attribution _:934925 ;
rdf:subject ?pfs147 ;
rdf:predicate up:annotation ;
rdf:object ?annotation148 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_04079
#Rule MF_04079 Created by:? on:2017-05-29 Modified by:Catherine Rivoire on:2024-11-05
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_04079 .
?thisOrganism rdfs:subClassOf+ taxon:11646 .
BIND(URI(CONCAT(STR(?this), '#MF_04079a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_04079a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_04079a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_04079a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_04079a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_04079a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_04079a10')) AS ?annotation10) .
BIND(URI(CONCAT(STR(?this), '#MF_04079a11')) AS ?annotation11) .
BIND(URI(CONCAT(STR(?this), '#MF_04079a12')) AS ?annotation12) .
BIND(URI(CONCAT(STR(?this), '#MF_04079a13')) AS ?annotation13) .
BIND(URI(CONCAT(STR(?this), '#MF_04079a14')) AS ?annotation14) .
BIND(URI(CONCAT(STR(?this), '#MF_04079a15')) AS ?annotation15) .
BIND(URI(CONCAT(STR(?this), '#MF_04079a16')) AS ?annotation16) .
BIND(URI(CONCAT(STR(?this), '#MF_04079a17')) AS ?annotation17) .
BIND(URI(CONCAT(STR(?this), '#MF_04079a18')) AS ?annotation18) .
BIND(URI(CONCAT(STR(?this), '#MF_04079a19')) AS ?annotation19) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch157 faldo:location ?templateMotifSequenceMatchRegionP04608158 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP04608160 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04608MF_04079153 .
?templateMotifSequenceMatchRegionP04608158 faldo:begin ?templateMotifSequenceMatchBeginP04608159 .
?templateMotifSequenceMatchBeginP04608159 faldo:position ?templateMotifSequenceMatchBeginPositionP04608154 ;
faldo:reference isoform:P04608-1 .
?templateMotifSequenceProfileAlignmentOperationP04608160 edam:has_input signature:MF_04079 ;
rdf:type edam:operation_0300 .
?targetMotifMatch161 faldo:location ?targetMotifMatchRegionMatch162 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04079164 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04608MF_04079155 .
?targetMotifMatchRegionMatch162 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04079163 .
?targetMotifMatchRegionMatchBeginMF_04079163 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04079156 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04079164 edam:has_input signature:MF_04079 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04608MF_04079153, 1, (STRLEN(?templateMotifCigarP04608MF_04079153) - STRLEN(REPLACE(?templateMotifCigarP04608MF_04079153, CONCAT('^(?:-*[^-]){', STR(((1 - ?templateMotifSequenceMatchBeginPositionP04608154) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1165) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04608MF_04079155, 1, (STRLEN(?targetMotifMatchCigarP04608MF_04079155) - STRLEN(REPLACE(?targetMotifMatchCigarP04608MF_04079155, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1165), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04608MF_04079155, 1, (STRLEN(?targetMotifMatchCigarP04608MF_04079155) - STRLEN(REPLACE(?targetMotifMatchCigarP04608MF_04079155, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1165), '}'), '')))), '[^-]', ''))) AS ?step2166) .
BIND(((?step2166 + ?targetMotifMatchRegionMatchBeginPositionMF_04079156) - 1) AS ?thisPositionOn24) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04608MF_04079153, 1, (STRLEN(?templateMotifCigarP04608MF_04079153) - STRLEN(REPLACE(?templateMotifCigarP04608MF_04079153, CONCAT('^(?:-*[^-]){', STR(((48 - ?templateMotifSequenceMatchBeginPositionP04608154) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1167) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04608MF_04079155, 1, (STRLEN(?targetMotifMatchCigarP04608MF_04079155) - STRLEN(REPLACE(?targetMotifMatchCigarP04608MF_04079155, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1167), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04608MF_04079155, 1, (STRLEN(?targetMotifMatchCigarP04608MF_04079155) - STRLEN(REPLACE(?targetMotifMatchCigarP04608MF_04079155, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1167), '}'), '')))), '[^-]', ''))) AS ?step2168) .
BIND(((?step2168 + ?targetMotifMatchRegionMatchBeginPositionMF_04079156) - 1) AS ?thisPositionOn25) .
BIND(?this AS ?pfs1t169) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb22) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse23) .
FILTER ((BOUND(?thisPositionOn24) && BOUND(?thisPositionOn25))) .
BIND(URI(CONCAT(STR(?this), '#MF_04079a21')) AS ?annotation21) .
BIND(?this AS ?pfs20) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch174 faldo:location ?templateMotifSequenceMatchRegionP04608175 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP04608177 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04608MF_04079170 .
?templateMotifSequenceMatchRegionP04608175 faldo:begin ?templateMotifSequenceMatchBeginP04608176 .
?templateMotifSequenceMatchBeginP04608176 faldo:position ?templateMotifSequenceMatchBeginPositionP04608171 ;
faldo:reference isoform:P04608-1 .
?templateMotifSequenceProfileAlignmentOperationP04608177 edam:has_input signature:MF_04079 ;
rdf:type edam:operation_0300 .
?targetMotifMatch178 faldo:location ?targetMotifMatchRegionMatch179 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04079181 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04608MF_04079172 .
?targetMotifMatchRegionMatch179 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04079180 .
?targetMotifMatchRegionMatchBeginMF_04079180 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04079173 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04079181 edam:has_input signature:MF_04079 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04608MF_04079170, 1, (STRLEN(?templateMotifCigarP04608MF_04079170) - STRLEN(REPLACE(?templateMotifCigarP04608MF_04079170, CONCAT('^(?:-*[^-]){', STR(((1 - ?templateMotifSequenceMatchBeginPositionP04608171) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1182) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04608MF_04079172, 1, (STRLEN(?targetMotifMatchCigarP04608MF_04079172) - STRLEN(REPLACE(?targetMotifMatchCigarP04608MF_04079172, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1182), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04608MF_04079172, 1, (STRLEN(?targetMotifMatchCigarP04608MF_04079172) - STRLEN(REPLACE(?targetMotifMatchCigarP04608MF_04079172, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1182), '}'), '')))), '[^-]', ''))) AS ?step2183) .
BIND(((?step2183 + ?targetMotifMatchRegionMatchBeginPositionMF_04079173) - 1) AS ?thisPositionOn30) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04608MF_04079170, 1, (STRLEN(?templateMotifCigarP04608MF_04079170) - STRLEN(REPLACE(?templateMotifCigarP04608MF_04079170, CONCAT('^(?:-*[^-]){', STR(((24 - ?templateMotifSequenceMatchBeginPositionP04608171) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1184) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04608MF_04079172, 1, (STRLEN(?targetMotifMatchCigarP04608MF_04079172) - STRLEN(REPLACE(?targetMotifMatchCigarP04608MF_04079172, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1184), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04608MF_04079172, 1, (STRLEN(?targetMotifMatchCigarP04608MF_04079172) - STRLEN(REPLACE(?targetMotifMatchCigarP04608MF_04079172, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1184), '}'), '')))), '[^-]', ''))) AS ?step2185) .
BIND(((?step2185 + ?targetMotifMatchRegionMatchBeginPositionMF_04079173) - 1) AS ?thisPositionOn31) .
BIND(?this AS ?pfs1t186) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb28) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse29) .
FILTER ((BOUND(?thisPositionOn30) && BOUND(?thisPositionOn31))) .
BIND(URI(CONCAT(STR(?this), '#MF_04079a27')) AS ?annotation27) .
BIND(?this AS ?pfs26) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch191 faldo:location ?templateMotifSequenceMatchRegionP04608192 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP04608194 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04608MF_04079187 .
?templateMotifSequenceMatchRegionP04608192 faldo:begin ?templateMotifSequenceMatchBeginP04608193 .
?templateMotifSequenceMatchBeginP04608193 faldo:position ?templateMotifSequenceMatchBeginPositionP04608188 ;
faldo:reference isoform:P04608-1 .
?templateMotifSequenceProfileAlignmentOperationP04608194 edam:has_input signature:MF_04079 ;
rdf:type edam:operation_0300 .
?targetMotifMatch195 faldo:location ?targetMotifMatchRegionMatch196 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04079198 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04608MF_04079189 .
?targetMotifMatchRegionMatch196 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04079197 .
?targetMotifMatchRegionMatchBeginMF_04079197 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04079190 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04079198 edam:has_input signature:MF_04079 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04608MF_04079187, 1, (STRLEN(?templateMotifCigarP04608MF_04079187) - STRLEN(REPLACE(?templateMotifCigarP04608MF_04079187, CONCAT('^(?:-*[^-]){', STR(((22 - ?templateMotifSequenceMatchBeginPositionP04608188) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1199) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04608MF_04079189, 1, (STRLEN(?targetMotifMatchCigarP04608MF_04079189) - STRLEN(REPLACE(?targetMotifMatchCigarP04608MF_04079189, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1199), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04608MF_04079189, 1, (STRLEN(?targetMotifMatchCigarP04608MF_04079189) - STRLEN(REPLACE(?targetMotifMatchCigarP04608MF_04079189, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1199), '}'), '')))), '[^-]', ''))) AS ?step2200) .
BIND(((?step2200 + ?targetMotifMatchRegionMatchBeginPositionMF_04079190) - 1) AS ?thisPositionOn36) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04608MF_04079187, 1, (STRLEN(?templateMotifCigarP04608MF_04079187) - STRLEN(REPLACE(?templateMotifCigarP04608MF_04079187, CONCAT('^(?:-*[^-]){', STR(((37 - ?templateMotifSequenceMatchBeginPositionP04608188) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1201) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04608MF_04079189, 1, (STRLEN(?targetMotifMatchCigarP04608MF_04079189) - STRLEN(REPLACE(?targetMotifMatchCigarP04608MF_04079189, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1201), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04608MF_04079189, 1, (STRLEN(?targetMotifMatchCigarP04608MF_04079189) - STRLEN(REPLACE(?targetMotifMatchCigarP04608MF_04079189, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1201), '}'), '')))), '[^-]', ''))) AS ?step2202) .
BIND(((?step2202 + ?targetMotifMatchRegionMatchBeginPositionMF_04079190) - 1) AS ?thisPositionOn37) .
BIND(?this AS ?pfs1t203) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfsb34) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfse35) .
FILTER ((BOUND(?thisPositionOn36) && BOUND(?thisPositionOn37))) .
BIND(URI(CONCAT(STR(?this), '#MF_04079a33')) AS ?annotation33) .
BIND(?this AS ?pfs32) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch208 faldo:location ?templateMotifSequenceMatchRegionP04608209 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP04608211 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04608MF_04079204 .
?templateMotifSequenceMatchRegionP04608209 faldo:begin ?templateMotifSequenceMatchBeginP04608210 .
?templateMotifSequenceMatchBeginP04608210 faldo:position ?templateMotifSequenceMatchBeginPositionP04608205 ;
faldo:reference isoform:P04608-1 .
?templateMotifSequenceProfileAlignmentOperationP04608211 edam:has_input signature:MF_04079 ;
rdf:type edam:operation_0300 .
?targetMotifMatch212 faldo:location ?targetMotifMatchRegionMatch213 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04079215 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04608MF_04079206 .
?targetMotifMatchRegionMatch213 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04079214 .
?targetMotifMatchRegionMatchBeginMF_04079214 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04079207 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04079215 edam:has_input signature:MF_04079 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04608MF_04079204, 1, (STRLEN(?templateMotifCigarP04608MF_04079204) - STRLEN(REPLACE(?templateMotifCigarP04608MF_04079204, CONCAT('^(?:-*[^-]){', STR(((38 - ?templateMotifSequenceMatchBeginPositionP04608205) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1216) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04608MF_04079206, 1, (STRLEN(?targetMotifMatchCigarP04608MF_04079206) - STRLEN(REPLACE(?targetMotifMatchCigarP04608MF_04079206, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1216), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04608MF_04079206, 1, (STRLEN(?targetMotifMatchCigarP04608MF_04079206) - STRLEN(REPLACE(?targetMotifMatchCigarP04608MF_04079206, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1216), '}'), '')))), '[^-]', ''))) AS ?step2217) .
BIND(((?step2217 + ?targetMotifMatchRegionMatchBeginPositionMF_04079207) - 1) AS ?thisPositionOn42) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04608MF_04079204, 1, (STRLEN(?templateMotifCigarP04608MF_04079204) - STRLEN(REPLACE(?templateMotifCigarP04608MF_04079204, CONCAT('^(?:-*[^-]){', STR(((48 - ?templateMotifSequenceMatchBeginPositionP04608205) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1218) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04608MF_04079206, 1, (STRLEN(?targetMotifMatchCigarP04608MF_04079206) - STRLEN(REPLACE(?targetMotifMatchCigarP04608MF_04079206, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1218), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04608MF_04079206, 1, (STRLEN(?targetMotifMatchCigarP04608MF_04079206) - STRLEN(REPLACE(?targetMotifMatchCigarP04608MF_04079206, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1218), '}'), '')))), '[^-]', ''))) AS ?step2219) .
BIND(((?step2219 + ?targetMotifMatchRegionMatchBeginPositionMF_04079207) - 1) AS ?thisPositionOn43) .
BIND(?this AS ?pfs1t220) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb40) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse41) .
FILTER ((BOUND(?thisPositionOn42) && BOUND(?thisPositionOn43))) .
BIND(URI(CONCAT(STR(?this), '#MF_04079a39')) AS ?annotation39) .
BIND(?this AS ?pfs38) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch225 faldo:location ?templateMotifSequenceMatchRegionP04608226 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP04608228 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04608MF_04079221 .
?templateMotifSequenceMatchRegionP04608226 faldo:begin ?templateMotifSequenceMatchBeginP04608227 .
?templateMotifSequenceMatchBeginP04608227 faldo:position ?templateMotifSequenceMatchBeginPositionP04608222 ;
faldo:reference isoform:P04608-1 .
?templateMotifSequenceProfileAlignmentOperationP04608228 edam:has_input signature:MF_04079 ;
rdf:type edam:operation_0300 .
?targetMotifMatch229 faldo:location ?targetMotifMatchRegionMatch230 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04079232 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04608MF_04079223 .
?targetMotifMatchRegionMatch230 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04079231 .
?targetMotifMatchRegionMatchBeginMF_04079231 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04079224 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04079232 edam:has_input signature:MF_04079 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04608MF_04079221, 1, (STRLEN(?templateMotifCigarP04608MF_04079221) - STRLEN(REPLACE(?templateMotifCigarP04608MF_04079221, CONCAT('^(?:-*[^-]){', STR(((49 - ?templateMotifSequenceMatchBeginPositionP04608222) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1233) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04608MF_04079223, 1, (STRLEN(?targetMotifMatchCigarP04608MF_04079223) - STRLEN(REPLACE(?targetMotifMatchCigarP04608MF_04079223, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1233), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04608MF_04079223, 1, (STRLEN(?targetMotifMatchCigarP04608MF_04079223) - STRLEN(REPLACE(?targetMotifMatchCigarP04608MF_04079223, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1233), '}'), '')))), '[^-]', ''))) AS ?step2234) .
BIND(((?step2234 + ?targetMotifMatchRegionMatchBeginPositionMF_04079224) - 1) AS ?thisPositionOn48) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04608MF_04079221, 1, (STRLEN(?templateMotifCigarP04608MF_04079221) - STRLEN(REPLACE(?templateMotifCigarP04608MF_04079221, CONCAT('^(?:-*[^-]){', STR(((86 - ?templateMotifSequenceMatchBeginPositionP04608222) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1235) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04608MF_04079223, 1, (STRLEN(?targetMotifMatchCigarP04608MF_04079223) - STRLEN(REPLACE(?targetMotifMatchCigarP04608MF_04079223, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1235), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04608MF_04079223, 1, (STRLEN(?targetMotifMatchCigarP04608MF_04079223) - STRLEN(REPLACE(?targetMotifMatchCigarP04608MF_04079223, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1235), '}'), '')))), '[^-]', ''))) AS ?step2236) .
BIND(((?step2236 + ?targetMotifMatchRegionMatchBeginPositionMF_04079224) - 1) AS ?thisPositionOn49) .
BIND(?this AS ?pfs1t237) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfsb46) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfse47) .
FILTER ((BOUND(?thisPositionOn48) && BOUND(?thisPositionOn49))) .
BIND(URI(CONCAT(STR(?this), '#MF_04079a45')) AS ?annotation45) .
BIND(?this AS ?pfs44) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch242 faldo:location ?templateMotifSequenceMatchRegionP04608243 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP04608245 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04608MF_04079238 .
?templateMotifSequenceMatchRegionP04608243 faldo:begin ?templateMotifSequenceMatchBeginP04608244 .
?templateMotifSequenceMatchBeginP04608244 faldo:position ?templateMotifSequenceMatchBeginPositionP04608239 ;
faldo:reference isoform:P04608-1 .
?templateMotifSequenceProfileAlignmentOperationP04608245 edam:has_input signature:MF_04079 ;
rdf:type edam:operation_0300 .
?targetMotifMatch246 faldo:location ?targetMotifMatchRegionMatch247 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04079249 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04608MF_04079240 .
?targetMotifMatchRegionMatch247 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04079248 .
?targetMotifMatchRegionMatchBeginMF_04079248 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04079241 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04079249 edam:has_input signature:MF_04079 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04608MF_04079238, 1, (STRLEN(?templateMotifCigarP04608MF_04079238) - STRLEN(REPLACE(?templateMotifCigarP04608MF_04079238, CONCAT('^(?:-*[^-]){', STR(((49 - ?templateMotifSequenceMatchBeginPositionP04608239) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1250) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04608MF_04079240, 1, (STRLEN(?targetMotifMatchCigarP04608MF_04079240) - STRLEN(REPLACE(?targetMotifMatchCigarP04608MF_04079240, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1250), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04608MF_04079240, 1, (STRLEN(?targetMotifMatchCigarP04608MF_04079240) - STRLEN(REPLACE(?targetMotifMatchCigarP04608MF_04079240, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1250), '}'), '')))), '[^-]', ''))) AS ?step2251) .
BIND(((?step2251 + ?targetMotifMatchRegionMatchBeginPositionMF_04079241) - 1) AS ?thisPositionOn54) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04608MF_04079238, 1, (STRLEN(?templateMotifCigarP04608MF_04079238) - STRLEN(REPLACE(?templateMotifCigarP04608MF_04079238, CONCAT('^(?:-*[^-]){', STR(((57 - ?templateMotifSequenceMatchBeginPositionP04608239) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1252) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04608MF_04079240, 1, (STRLEN(?targetMotifMatchCigarP04608MF_04079240) - STRLEN(REPLACE(?targetMotifMatchCigarP04608MF_04079240, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1252), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04608MF_04079240, 1, (STRLEN(?targetMotifMatchCigarP04608MF_04079240) - STRLEN(REPLACE(?targetMotifMatchCigarP04608MF_04079240, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1252), '}'), '')))), '[^-]', ''))) AS ?step2253) .
BIND(((?step2253 + ?targetMotifMatchRegionMatchBeginPositionMF_04079241) - 1) AS ?thisPositionOn55) .
BIND(?this AS ?pfs1t254) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfsb52) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfse53) .
FILTER ((BOUND(?thisPositionOn54) && BOUND(?thisPositionOn55))) .
BIND(URI(CONCAT(STR(?this), '#MF_04079a51')) AS ?annotation51) .
BIND(?this AS ?pfs50) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch259 faldo:location ?templateMotifSequenceMatchRegionP04608260 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP04608262 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04608MF_04079255 .
?templateMotifSequenceMatchRegionP04608260 faldo:begin ?templateMotifSequenceMatchBeginP04608261 .
?templateMotifSequenceMatchBeginP04608261 faldo:position ?templateMotifSequenceMatchBeginPositionP04608256 ;
faldo:reference isoform:P04608-1 .
?templateMotifSequenceProfileAlignmentOperationP04608262 edam:has_input signature:MF_04079 ;
rdf:type edam:operation_0300 .
?targetMotifMatch263 faldo:location ?targetMotifMatchRegionMatch264 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04079266 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04608MF_04079257 .
?targetMotifMatchRegionMatch264 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04079265 .
?targetMotifMatchRegionMatchBeginMF_04079265 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04079258 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04079266 edam:has_input signature:MF_04079 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04608MF_04079255, 1, (STRLEN(?templateMotifCigarP04608MF_04079255) - STRLEN(REPLACE(?templateMotifCigarP04608MF_04079255, CONCAT('^(?:-*[^-]){', STR(((78 - ?templateMotifSequenceMatchBeginPositionP04608256) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1267) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04608MF_04079257, 1, (STRLEN(?targetMotifMatchCigarP04608MF_04079257) - STRLEN(REPLACE(?targetMotifMatchCigarP04608MF_04079257, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1267), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04608MF_04079257, 1, (STRLEN(?targetMotifMatchCigarP04608MF_04079257) - STRLEN(REPLACE(?targetMotifMatchCigarP04608MF_04079257, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1267), '}'), '')))), '[^-]', ''))) AS ?step2268) .
BIND(((?step2268 + ?targetMotifMatchRegionMatchBeginPositionMF_04079258) - 1) AS ?thisPositionOn60) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04608MF_04079255, 1, (STRLEN(?templateMotifCigarP04608MF_04079255) - STRLEN(REPLACE(?templateMotifCigarP04608MF_04079255, CONCAT('^(?:-*[^-]){', STR(((80 - ?templateMotifSequenceMatchBeginPositionP04608256) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1269) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04608MF_04079257, 1, (STRLEN(?targetMotifMatchCigarP04608MF_04079257) - STRLEN(REPLACE(?targetMotifMatchCigarP04608MF_04079257, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1269), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04608MF_04079257, 1, (STRLEN(?targetMotifMatchCigarP04608MF_04079257) - STRLEN(REPLACE(?targetMotifMatchCigarP04608MF_04079257, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1269), '}'), '')))), '[^-]', ''))) AS ?step2270) .
BIND(((?step2270 + ?targetMotifMatchRegionMatchBeginPositionMF_04079258) - 1) AS ?thisPositionOn61) .
BIND(?this AS ?pfs1t271) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfsb58) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfse59) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn60, (?thisPositionOn61 - ?thisPositionOn60)) = 'RGD')) .
BIND(URI(CONCAT(STR(?this), '#MF_04079a57')) AS ?annotation57) .
BIND(?this AS ?pfs56) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch276 faldo:location ?templateMotifSequenceMatchRegionP04608277 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP04608279 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04608MF_04079272 .
?templateMotifSequenceMatchRegionP04608277 faldo:begin ?templateMotifSequenceMatchBeginP04608278 .
?templateMotifSequenceMatchBeginP04608278 faldo:position ?templateMotifSequenceMatchBeginPositionP04608273 ;
faldo:reference isoform:P04608-1 .
?templateMotifSequenceProfileAlignmentOperationP04608279 edam:has_input signature:MF_04079 ;
rdf:type edam:operation_0300 .
?targetMotifMatch280 faldo:location ?targetMotifMatchRegionMatch281 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04079283 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04608MF_04079274 .
?targetMotifMatchRegionMatch281 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04079282 .
?targetMotifMatchRegionMatchBeginMF_04079282 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04079275 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04079283 edam:has_input signature:MF_04079 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04608MF_04079272, 1, (STRLEN(?templateMotifCigarP04608MF_04079272) - STRLEN(REPLACE(?templateMotifCigarP04608MF_04079272, CONCAT('^(?:-*[^-]){', STR(((22 - ?templateMotifSequenceMatchBeginPositionP04608273) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1284) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04608MF_04079274, 1, (STRLEN(?targetMotifMatchCigarP04608MF_04079274) - STRLEN(REPLACE(?targetMotifMatchCigarP04608MF_04079274, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1284), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04608MF_04079274, 1, (STRLEN(?targetMotifMatchCigarP04608MF_04079274) - STRLEN(REPLACE(?targetMotifMatchCigarP04608MF_04079274, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1284), '}'), '')))), '[^-]', ''))) AS ?step2285) .
BIND(((?step2285 + ?targetMotifMatchRegionMatchBeginPositionMF_04079275) - 1) AS ?thisPositionOn67) .
BIND(?thisPositionOn67 AS ?thisPositionOn68) .
BIND(?this AS ?pfs1t286) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfsb64) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn68))) AS ?pfse65) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn67, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_04079a63')) AS ?annotation63) .
BIND(?this AS ?pfs62) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch291 faldo:location ?templateMotifSequenceMatchRegionP04608292 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP04608294 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04608MF_04079287 .
?templateMotifSequenceMatchRegionP04608292 faldo:begin ?templateMotifSequenceMatchBeginP04608293 .
?templateMotifSequenceMatchBeginP04608293 faldo:position ?templateMotifSequenceMatchBeginPositionP04608288 ;
faldo:reference isoform:P04608-1 .
?templateMotifSequenceProfileAlignmentOperationP04608294 edam:has_input signature:MF_04079 ;
rdf:type edam:operation_0300 .
?targetMotifMatch295 faldo:location ?targetMotifMatchRegionMatch296 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04079298 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04608MF_04079289 .
?targetMotifMatchRegionMatch296 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04079297 .
?targetMotifMatchRegionMatchBeginMF_04079297 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04079290 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04079298 edam:has_input signature:MF_04079 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04608MF_04079287, 1, (STRLEN(?templateMotifCigarP04608MF_04079287) - STRLEN(REPLACE(?templateMotifCigarP04608MF_04079287, CONCAT('^(?:-*[^-]){', STR(((25 - ?templateMotifSequenceMatchBeginPositionP04608288) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1299) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04608MF_04079289, 1, (STRLEN(?targetMotifMatchCigarP04608MF_04079289) - STRLEN(REPLACE(?targetMotifMatchCigarP04608MF_04079289, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1299), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04608MF_04079289, 1, (STRLEN(?targetMotifMatchCigarP04608MF_04079289) - STRLEN(REPLACE(?targetMotifMatchCigarP04608MF_04079289, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1299), '}'), '')))), '[^-]', ''))) AS ?step2300) .
BIND(((?step2300 + ?targetMotifMatchRegionMatchBeginPositionMF_04079290) - 1) AS ?thisPositionOn74) .
BIND(?thisPositionOn74 AS ?thisPositionOn75) .
BIND(?this AS ?pfs1t301) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn74))) AS ?pfsb71) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn75))) AS ?pfse72) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn74, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_04079a70')) AS ?annotation70) .
BIND(?this AS ?pfs69) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch306 faldo:location ?templateMotifSequenceMatchRegionP04608307 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP04608309 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04608MF_04079302 .
?templateMotifSequenceMatchRegionP04608307 faldo:begin ?templateMotifSequenceMatchBeginP04608308 .
?templateMotifSequenceMatchBeginP04608308 faldo:position ?templateMotifSequenceMatchBeginPositionP04608303 ;
faldo:reference isoform:P04608-1 .
?templateMotifSequenceProfileAlignmentOperationP04608309 edam:has_input signature:MF_04079 ;
rdf:type edam:operation_0300 .
?targetMotifMatch310 faldo:location ?targetMotifMatchRegionMatch311 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04079313 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04608MF_04079304 .
?targetMotifMatchRegionMatch311 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04079312 .
?targetMotifMatchRegionMatchBeginMF_04079312 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04079305 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04079313 edam:has_input signature:MF_04079 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04608MF_04079302, 1, (STRLEN(?templateMotifCigarP04608MF_04079302) - STRLEN(REPLACE(?templateMotifCigarP04608MF_04079302, CONCAT('^(?:-*[^-]){', STR(((27 - ?templateMotifSequenceMatchBeginPositionP04608303) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1314) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04608MF_04079304, 1, (STRLEN(?targetMotifMatchCigarP04608MF_04079304) - STRLEN(REPLACE(?targetMotifMatchCigarP04608MF_04079304, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1314), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04608MF_04079304, 1, (STRLEN(?targetMotifMatchCigarP04608MF_04079304) - STRLEN(REPLACE(?targetMotifMatchCigarP04608MF_04079304, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1314), '}'), '')))), '[^-]', ''))) AS ?step2315) .
BIND(((?step2315 + ?targetMotifMatchRegionMatchBeginPositionMF_04079305) - 1) AS ?thisPositionOn81) .
BIND(?thisPositionOn81 AS ?thisPositionOn82) .
BIND(?this AS ?pfs1t316) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn81))) AS ?pfsb78) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn82))) AS ?pfse79) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn81, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_04079a77')) AS ?annotation77) .
BIND(?this AS ?pfs76) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch321 faldo:location ?templateMotifSequenceMatchRegionP04608322 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP04608324 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04608MF_04079317 .
?templateMotifSequenceMatchRegionP04608322 faldo:begin ?templateMotifSequenceMatchBeginP04608323 .
?templateMotifSequenceMatchBeginP04608323 faldo:position ?templateMotifSequenceMatchBeginPositionP04608318 ;
faldo:reference isoform:P04608-1 .
?templateMotifSequenceProfileAlignmentOperationP04608324 edam:has_input signature:MF_04079 ;
rdf:type edam:operation_0300 .
?targetMotifMatch325 faldo:location ?targetMotifMatchRegionMatch326 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04079328 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04608MF_04079319 .
?targetMotifMatchRegionMatch326 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04079327 .
?targetMotifMatchRegionMatchBeginMF_04079327 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04079320 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04079328 edam:has_input signature:MF_04079 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04608MF_04079317, 1, (STRLEN(?templateMotifCigarP04608MF_04079317) - STRLEN(REPLACE(?templateMotifCigarP04608MF_04079317, CONCAT('^(?:-*[^-]){', STR(((30 - ?templateMotifSequenceMatchBeginPositionP04608318) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1329) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04608MF_04079319, 1, (STRLEN(?targetMotifMatchCigarP04608MF_04079319) - STRLEN(REPLACE(?targetMotifMatchCigarP04608MF_04079319, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1329), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04608MF_04079319, 1, (STRLEN(?targetMotifMatchCigarP04608MF_04079319) - STRLEN(REPLACE(?targetMotifMatchCigarP04608MF_04079319, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1329), '}'), '')))), '[^-]', ''))) AS ?step2330) .
BIND(((?step2330 + ?targetMotifMatchRegionMatchBeginPositionMF_04079320) - 1) AS ?thisPositionOn88) .
BIND(?thisPositionOn88 AS ?thisPositionOn89) .
BIND(?this AS ?pfs1t331) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn88))) AS ?pfsb85) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn89))) AS ?pfse86) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn88, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_04079a84')) AS ?annotation84) .
BIND(?this AS ?pfs83) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch336 faldo:location ?templateMotifSequenceMatchRegionP04608337 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP04608339 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04608MF_04079332 .
?templateMotifSequenceMatchRegionP04608337 faldo:begin ?templateMotifSequenceMatchBeginP04608338 .
?templateMotifSequenceMatchBeginP04608338 faldo:position ?templateMotifSequenceMatchBeginPositionP04608333 ;
faldo:reference isoform:P04608-1 .
?templateMotifSequenceProfileAlignmentOperationP04608339 edam:has_input signature:MF_04079 ;
rdf:type edam:operation_0300 .
?targetMotifMatch340 faldo:location ?targetMotifMatchRegionMatch341 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04079343 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04608MF_04079334 .
?targetMotifMatchRegionMatch341 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04079342 .
?targetMotifMatchRegionMatchBeginMF_04079342 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04079335 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04079343 edam:has_input signature:MF_04079 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04608MF_04079332, 1, (STRLEN(?templateMotifCigarP04608MF_04079332) - STRLEN(REPLACE(?templateMotifCigarP04608MF_04079332, CONCAT('^(?:-*[^-]){', STR(((33 - ?templateMotifSequenceMatchBeginPositionP04608333) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1344) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04608MF_04079334, 1, (STRLEN(?targetMotifMatchCigarP04608MF_04079334) - STRLEN(REPLACE(?targetMotifMatchCigarP04608MF_04079334, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1344), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04608MF_04079334, 1, (STRLEN(?targetMotifMatchCigarP04608MF_04079334) - STRLEN(REPLACE(?targetMotifMatchCigarP04608MF_04079334, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1344), '}'), '')))), '[^-]', ''))) AS ?step2345) .
BIND(((?step2345 + ?targetMotifMatchRegionMatchBeginPositionMF_04079335) - 1) AS ?thisPositionOn95) .
BIND(?thisPositionOn95 AS ?thisPositionOn96) .
BIND(?this AS ?pfs1t346) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn95))) AS ?pfsb92) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn96))) AS ?pfse93) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn95, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_04079a91')) AS ?annotation91) .
BIND(?this AS ?pfs90) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch351 faldo:location ?templateMotifSequenceMatchRegionP04608352 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP04608354 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04608MF_04079347 .
?templateMotifSequenceMatchRegionP04608352 faldo:begin ?templateMotifSequenceMatchBeginP04608353 .
?templateMotifSequenceMatchBeginP04608353 faldo:position ?templateMotifSequenceMatchBeginPositionP04608348 ;
faldo:reference isoform:P04608-1 .
?templateMotifSequenceProfileAlignmentOperationP04608354 edam:has_input signature:MF_04079 ;
rdf:type edam:operation_0300 .
?targetMotifMatch355 faldo:location ?targetMotifMatchRegionMatch356 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04079358 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04608MF_04079349 .
?targetMotifMatchRegionMatch356 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04079357 .
?targetMotifMatchRegionMatchBeginMF_04079357 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04079350 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04079358 edam:has_input signature:MF_04079 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04608MF_04079347, 1, (STRLEN(?templateMotifCigarP04608MF_04079347) - STRLEN(REPLACE(?templateMotifCigarP04608MF_04079347, CONCAT('^(?:-*[^-]){', STR(((34 - ?templateMotifSequenceMatchBeginPositionP04608348) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1359) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04608MF_04079349, 1, (STRLEN(?targetMotifMatchCigarP04608MF_04079349) - STRLEN(REPLACE(?targetMotifMatchCigarP04608MF_04079349, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1359), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04608MF_04079349, 1, (STRLEN(?targetMotifMatchCigarP04608MF_04079349) - STRLEN(REPLACE(?targetMotifMatchCigarP04608MF_04079349, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1359), '}'), '')))), '[^-]', ''))) AS ?step2360) .
BIND(((?step2360 + ?targetMotifMatchRegionMatchBeginPositionMF_04079350) - 1) AS ?thisPositionOn102) .
BIND(?thisPositionOn102 AS ?thisPositionOn103) .
BIND(?this AS ?pfs1t361) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn102))) AS ?pfsb99) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn103))) AS ?pfse100) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn102, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_04079a98')) AS ?annotation98) .
BIND(?this AS ?pfs97) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch366 faldo:location ?templateMotifSequenceMatchRegionP04608367 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP04608369 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04608MF_04079362 .
?templateMotifSequenceMatchRegionP04608367 faldo:begin ?templateMotifSequenceMatchBeginP04608368 .
?templateMotifSequenceMatchBeginP04608368 faldo:position ?templateMotifSequenceMatchBeginPositionP04608363 ;
faldo:reference isoform:P04608-1 .
?templateMotifSequenceProfileAlignmentOperationP04608369 edam:has_input signature:MF_04079 ;
rdf:type edam:operation_0300 .
?targetMotifMatch370 faldo:location ?targetMotifMatchRegionMatch371 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04079373 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04608MF_04079364 .
?targetMotifMatchRegionMatch371 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04079372 .
?targetMotifMatchRegionMatchBeginMF_04079372 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04079365 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04079373 edam:has_input signature:MF_04079 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04608MF_04079362, 1, (STRLEN(?templateMotifCigarP04608MF_04079362) - STRLEN(REPLACE(?templateMotifCigarP04608MF_04079362, CONCAT('^(?:-*[^-]){', STR(((37 - ?templateMotifSequenceMatchBeginPositionP04608363) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1374) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04608MF_04079364, 1, (STRLEN(?targetMotifMatchCigarP04608MF_04079364) - STRLEN(REPLACE(?targetMotifMatchCigarP04608MF_04079364, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1374), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04608MF_04079364, 1, (STRLEN(?targetMotifMatchCigarP04608MF_04079364) - STRLEN(REPLACE(?targetMotifMatchCigarP04608MF_04079364, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1374), '}'), '')))), '[^-]', ''))) AS ?step2375) .
BIND(((?step2375 + ?targetMotifMatchRegionMatchBeginPositionMF_04079365) - 1) AS ?thisPositionOn109) .
BIND(?thisPositionOn109 AS ?thisPositionOn110) .
BIND(?this AS ?pfs1t376) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn109))) AS ?pfsb106) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn110))) AS ?pfse107) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn109, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_04079a105')) AS ?annotation105) .
BIND(?this AS ?pfs104) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch381 faldo:location ?templateMotifSequenceMatchRegionP04608382 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP04608384 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04608MF_04079377 .
?templateMotifSequenceMatchRegionP04608382 faldo:begin ?templateMotifSequenceMatchBeginP04608383 .
?templateMotifSequenceMatchBeginP04608383 faldo:position ?templateMotifSequenceMatchBeginPositionP04608378 ;
faldo:reference isoform:P04608-1 .
?templateMotifSequenceProfileAlignmentOperationP04608384 edam:has_input signature:MF_04079 ;
rdf:type edam:operation_0300 .
?targetMotifMatch385 faldo:location ?targetMotifMatchRegionMatch386 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04079388 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04608MF_04079379 .
?targetMotifMatchRegionMatch386 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04079387 .
?targetMotifMatchRegionMatchBeginMF_04079387 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04079380 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04079388 edam:has_input signature:MF_04079 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04608MF_04079377, 1, (STRLEN(?templateMotifCigarP04608MF_04079377) - STRLEN(REPLACE(?templateMotifCigarP04608MF_04079377, CONCAT('^(?:-*[^-]){', STR(((11 - ?templateMotifSequenceMatchBeginPositionP04608378) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1389) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04608MF_04079379, 1, (STRLEN(?targetMotifMatchCigarP04608MF_04079379) - STRLEN(REPLACE(?targetMotifMatchCigarP04608MF_04079379, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1389), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04608MF_04079379, 1, (STRLEN(?targetMotifMatchCigarP04608MF_04079379) - STRLEN(REPLACE(?targetMotifMatchCigarP04608MF_04079379, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1389), '}'), '')))), '[^-]', ''))) AS ?step2390) .
BIND(((?step2390 + ?targetMotifMatchRegionMatchBeginPositionMF_04079380) - 1) AS ?thisPositionOn115) .
BIND(?thisPositionOn115 AS ?thisPositionOn116) .
BIND(?this AS ?pfs1t391) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn115))) AS ?pfsb113) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn116))) AS ?pfse114) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn115, 1) = 'W')) .
BIND(URI(CONCAT(STR(?this), '#MF_04079a112')) AS ?annotation112) .
BIND(?this AS ?pfs111) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch396 faldo:location ?templateMotifSequenceMatchRegionP04608397 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP04608399 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04608MF_04079392 .
?templateMotifSequenceMatchRegionP04608397 faldo:begin ?templateMotifSequenceMatchBeginP04608398 .
?templateMotifSequenceMatchBeginP04608398 faldo:position ?templateMotifSequenceMatchBeginPositionP04608393 ;
faldo:reference isoform:P04608-1 .
?templateMotifSequenceProfileAlignmentOperationP04608399 edam:has_input signature:MF_04079 ;
rdf:type edam:operation_0300 .
?targetMotifMatch400 faldo:location ?targetMotifMatchRegionMatch401 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04079403 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04608MF_04079394 .
?targetMotifMatchRegionMatch401 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04079402 .
?targetMotifMatchRegionMatchBeginMF_04079402 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04079395 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04079403 edam:has_input signature:MF_04079 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04608MF_04079392, 1, (STRLEN(?templateMotifCigarP04608MF_04079392) - STRLEN(REPLACE(?templateMotifCigarP04608MF_04079392, CONCAT('^(?:-*[^-]){', STR(((28 - ?templateMotifSequenceMatchBeginPositionP04608393) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1404) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04608MF_04079394, 1, (STRLEN(?targetMotifMatchCigarP04608MF_04079394) - STRLEN(REPLACE(?targetMotifMatchCigarP04608MF_04079394, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1404), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04608MF_04079394, 1, (STRLEN(?targetMotifMatchCigarP04608MF_04079394) - STRLEN(REPLACE(?targetMotifMatchCigarP04608MF_04079394, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1404), '}'), '')))), '[^-]', ''))) AS ?step2405) .
BIND(((?step2405 + ?targetMotifMatchRegionMatchBeginPositionMF_04079395) - 1) AS ?thisPositionOn121) .
BIND(?thisPositionOn121 AS ?thisPositionOn122) .
BIND(?this AS ?pfs1t406) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn121))) AS ?pfsb119) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn122))) AS ?pfse120) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn121, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_04079a118')) AS ?annotation118) .
BIND(?this AS ?pfs117) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch411 faldo:location ?templateMotifSequenceMatchRegionP04608412 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP04608414 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04608MF_04079407 .
?templateMotifSequenceMatchRegionP04608412 faldo:begin ?templateMotifSequenceMatchBeginP04608413 .
?templateMotifSequenceMatchBeginP04608413 faldo:position ?templateMotifSequenceMatchBeginPositionP04608408 ;
faldo:reference isoform:P04608-1 .
?templateMotifSequenceProfileAlignmentOperationP04608414 edam:has_input signature:MF_04079 ;
rdf:type edam:operation_0300 .
?targetMotifMatch415 faldo:location ?targetMotifMatchRegionMatch416 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04079418 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04608MF_04079409 .
?targetMotifMatchRegionMatch416 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04079417 .
?targetMotifMatchRegionMatchBeginMF_04079417 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04079410 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04079418 edam:has_input signature:MF_04079 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04608MF_04079407, 1, (STRLEN(?templateMotifCigarP04608MF_04079407) - STRLEN(REPLACE(?templateMotifCigarP04608MF_04079407, CONCAT('^(?:-*[^-]){', STR(((50 - ?templateMotifSequenceMatchBeginPositionP04608408) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1419) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04608MF_04079409, 1, (STRLEN(?targetMotifMatchCigarP04608MF_04079409) - STRLEN(REPLACE(?targetMotifMatchCigarP04608MF_04079409, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1419), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04608MF_04079409, 1, (STRLEN(?targetMotifMatchCigarP04608MF_04079409) - STRLEN(REPLACE(?targetMotifMatchCigarP04608MF_04079409, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1419), '}'), '')))), '[^-]', ''))) AS ?step2420) .
BIND(((?step2420 + ?targetMotifMatchRegionMatchBeginPositionMF_04079410) - 1) AS ?thisPositionOn127) .
BIND(?thisPositionOn127 AS ?thisPositionOn128) .
BIND(?this AS ?pfs1t421) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn127))) AS ?pfsb125) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn128))) AS ?pfse126) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn127, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_04079a124')) AS ?annotation124) .
BIND(?this AS ?pfs123) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch426 faldo:location ?templateMotifSequenceMatchRegionP04608427 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP04608429 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04608MF_04079422 .
?templateMotifSequenceMatchRegionP04608427 faldo:begin ?templateMotifSequenceMatchBeginP04608428 .
?templateMotifSequenceMatchBeginP04608428 faldo:position ?templateMotifSequenceMatchBeginPositionP04608423 ;
faldo:reference isoform:P04608-1 .
?templateMotifSequenceProfileAlignmentOperationP04608429 edam:has_input signature:MF_04079 ;
rdf:type edam:operation_0300 .
?targetMotifMatch430 faldo:location ?targetMotifMatchRegionMatch431 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04079433 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04608MF_04079424 .
?targetMotifMatchRegionMatch431 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04079432 .
?targetMotifMatchRegionMatchBeginMF_04079432 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04079425 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04079433 edam:has_input signature:MF_04079 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04608MF_04079422, 1, (STRLEN(?templateMotifCigarP04608MF_04079422) - STRLEN(REPLACE(?templateMotifCigarP04608MF_04079422, CONCAT('^(?:-*[^-]){', STR(((51 - ?templateMotifSequenceMatchBeginPositionP04608423) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1434) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04608MF_04079424, 1, (STRLEN(?targetMotifMatchCigarP04608MF_04079424) - STRLEN(REPLACE(?targetMotifMatchCigarP04608MF_04079424, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1434), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04608MF_04079424, 1, (STRLEN(?targetMotifMatchCigarP04608MF_04079424) - STRLEN(REPLACE(?targetMotifMatchCigarP04608MF_04079424, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1434), '}'), '')))), '[^-]', ''))) AS ?step2435) .
BIND(((?step2435 + ?targetMotifMatchRegionMatchBeginPositionMF_04079425) - 1) AS ?thisPositionOn133) .
BIND(?thisPositionOn133 AS ?thisPositionOn134) .
BIND(?this AS ?pfs1t436) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn133))) AS ?pfsb131) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn134))) AS ?pfse132) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn133, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_04079a130')) AS ?annotation130) .
BIND(?this AS ?pfs129) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch441 faldo:location ?templateMotifSequenceMatchRegionP04608442 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP04608444 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04608MF_04079437 .
?templateMotifSequenceMatchRegionP04608442 faldo:begin ?templateMotifSequenceMatchBeginP04608443 .
?templateMotifSequenceMatchBeginP04608443 faldo:position ?templateMotifSequenceMatchBeginPositionP04608438 ;
faldo:reference isoform:P04608-1 .
?templateMotifSequenceProfileAlignmentOperationP04608444 edam:has_input signature:MF_04079 ;
rdf:type edam:operation_0300 .
?targetMotifMatch445 faldo:location ?targetMotifMatchRegionMatch446 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04079448 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04608MF_04079439 .
?targetMotifMatchRegionMatch446 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04079447 .
?targetMotifMatchRegionMatchBeginMF_04079447 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04079440 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04079448 edam:has_input signature:MF_04079 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04608MF_04079437, 1, (STRLEN(?templateMotifCigarP04608MF_04079437) - STRLEN(REPLACE(?templateMotifCigarP04608MF_04079437, CONCAT('^(?:-*[^-]){', STR(((52 - ?templateMotifSequenceMatchBeginPositionP04608438) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1449) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04608MF_04079439, 1, (STRLEN(?targetMotifMatchCigarP04608MF_04079439) - STRLEN(REPLACE(?targetMotifMatchCigarP04608MF_04079439, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1449), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04608MF_04079439, 1, (STRLEN(?targetMotifMatchCigarP04608MF_04079439) - STRLEN(REPLACE(?targetMotifMatchCigarP04608MF_04079439, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1449), '}'), '')))), '[^-]', ''))) AS ?step2450) .
BIND(((?step2450 + ?targetMotifMatchRegionMatchBeginPositionMF_04079440) - 1) AS ?thisPositionOn139) .
BIND(?thisPositionOn139 AS ?thisPositionOn140) .
BIND(?this AS ?pfs1t451) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn139))) AS ?pfsb137) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn140))) AS ?pfse138) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn139, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_04079a136')) AS ?annotation136) .
BIND(?this AS ?pfs135) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch456 faldo:location ?templateMotifSequenceMatchRegionP04608457 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP04608459 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04608MF_04079452 .
?templateMotifSequenceMatchRegionP04608457 faldo:begin ?templateMotifSequenceMatchBeginP04608458 .
?templateMotifSequenceMatchBeginP04608458 faldo:position ?templateMotifSequenceMatchBeginPositionP04608453 ;
faldo:reference isoform:P04608-1 .
?templateMotifSequenceProfileAlignmentOperationP04608459 edam:has_input signature:MF_04079 ;
rdf:type edam:operation_0300 .
?targetMotifMatch460 faldo:location ?targetMotifMatchRegionMatch461 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04079463 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04608MF_04079454 .
?targetMotifMatchRegionMatch461 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04079462 .
?targetMotifMatchRegionMatchBeginMF_04079462 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04079455 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04079463 edam:has_input signature:MF_04079 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04608MF_04079452, 1, (STRLEN(?templateMotifCigarP04608MF_04079452) - STRLEN(REPLACE(?templateMotifCigarP04608MF_04079452, CONCAT('^(?:-*[^-]){', STR(((53 - ?templateMotifSequenceMatchBeginPositionP04608453) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1464) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04608MF_04079454, 1, (STRLEN(?targetMotifMatchCigarP04608MF_04079454) - STRLEN(REPLACE(?targetMotifMatchCigarP04608MF_04079454, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1464), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04608MF_04079454, 1, (STRLEN(?targetMotifMatchCigarP04608MF_04079454) - STRLEN(REPLACE(?targetMotifMatchCigarP04608MF_04079454, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1464), '}'), '')))), '[^-]', ''))) AS ?step2465) .
BIND(((?step2465 + ?targetMotifMatchRegionMatchBeginPositionMF_04079455) - 1) AS ?thisPositionOn145) .
BIND(?thisPositionOn145 AS ?thisPositionOn146) .
BIND(?this AS ?pfs1t466) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn145))) AS ?pfsb143) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn146))) AS ?pfse144) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn145, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_04079a142')) AS ?annotation142) .
BIND(?this AS ?pfs141) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch471 faldo:location ?templateMotifSequenceMatchRegionP04608472 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP04608474 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04608MF_04079467 .
?templateMotifSequenceMatchRegionP04608472 faldo:begin ?templateMotifSequenceMatchBeginP04608473 .
?templateMotifSequenceMatchBeginP04608473 faldo:position ?templateMotifSequenceMatchBeginPositionP04608468 ;
faldo:reference isoform:P04608-1 .
?templateMotifSequenceProfileAlignmentOperationP04608474 edam:has_input signature:MF_04079 ;
rdf:type edam:operation_0300 .
?targetMotifMatch475 faldo:location ?targetMotifMatchRegionMatch476 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04079478 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04608MF_04079469 .
?targetMotifMatchRegionMatch476 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04079477 .
?targetMotifMatchRegionMatchBeginMF_04079477 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04079470 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04079478 edam:has_input signature:MF_04079 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04608MF_04079467, 1, (STRLEN(?templateMotifCigarP04608MF_04079467) - STRLEN(REPLACE(?templateMotifCigarP04608MF_04079467, CONCAT('^(?:-*[^-]){', STR(((71 - ?templateMotifSequenceMatchBeginPositionP04608468) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1479) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04608MF_04079469, 1, (STRLEN(?targetMotifMatchCigarP04608MF_04079469) - STRLEN(REPLACE(?targetMotifMatchCigarP04608MF_04079469, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1479), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04608MF_04079469, 1, (STRLEN(?targetMotifMatchCigarP04608MF_04079469) - STRLEN(REPLACE(?targetMotifMatchCigarP04608MF_04079469, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1479), '}'), '')))), '[^-]', ''))) AS ?step2480) .
BIND(((?step2480 + ?targetMotifMatchRegionMatchBeginPositionMF_04079470) - 1) AS ?thisPositionOn151) .
BIND(?thisPositionOn151 AS ?thisPositionOn152) .
BIND(?this AS ?pfs1t481) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn151))) AS ?pfsb149) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn152))) AS ?pfse150) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn151, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_04079a148')) AS ?annotation148) .
BIND(?this AS ?pfs147) .
}
}
"xsd:string |
