| http://purl.uniprot.org/unirules/MF_01225#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:432187 up:source unirule:MF_01225 .
_:432188 up:source unirule:MF_01225 .
_:432189 up:source unirule:MF_01225 .
_:432190 up:source unirule:MF_01225 .
_:432191 up:source unirule:MF_01225 .
_:432192 up:source unirule:MF_01225 .
_:432193 up:source unirule:MF_01225 .
_:432194 up:source unirule:MF_01225 .
_:432195 up:source unirule:MF_01225 .
_:432196 up:source unirule:MF_01225 .
_:432197 up:source unirule:MF_01225 .
_:432198 up:source unirule:MF_01225 .
_:432199 up:source unirule:MF_01225 .
_:432200 up:source unirule:MF_01225 .
_:432201 up:source unirule:MF_01225 .
_:432202 up:source unirule:MF_01225 .
_:432203 up:source unirule:MF_01225 .
_:432204 up:source unirule:MF_01225 .
_:432205 up:source unirule:MF_01225 .
_:432206 up:source unirule:MF_01225 .
_:432207 up:source unirule:MF_01225 .
_:432208 up:source unirule:MF_01225 .
_:432209 up:source unirule:MF_01225 .
_:432210 up:source unirule:MF_01225 .
_:432211 up:source unirule:MF_01225 .
_:432212 up:source unirule:MF_01225 .
_:432213 up:source unirule:MF_01225 .
_:432214 up:source unirule:MF_01225 .
_:432215 up:source unirule:MF_01225 .
_:432216 up:source unirule:MF_01225 .
_:432217 up:source unirule:MF_01225 .
_:432218 up:source unirule:MF_01225 .
_:432219 up:source unirule:MF_01225 .
_:432220 up:source unirule:MF_01225 .
_:432221 up:source unirule:MF_01225 .
_:432222 up:source unirule:MF_01225 .
_:432223 up:source unirule:MF_01225 .
_:432224 up:source unirule:MF_01225 .
_:432225 up:source unirule:MF_01225 .
_:432226 up:source unirule:MF_01225 .
_:432227 up:source unirule:MF_01225 .
_:432228 up:source unirule:MF_01225 .
_:432229 up:source unirule:MF_01225 .
_:432230 up:source unirule:MF_01225 .
_:432231 up:source unirule:MF_01225 .
_:432232 up:source unirule:MF_01225 .
_:432233 up:source unirule:MF_01225 .
_:432234 up:source unirule:MF_01225 .
_:432235 up:source unirule:MF_01225 .
_:432236 up:source unirule:MF_01225 .
_:432237 up:source unirule:MF_01225 .
_:432238 up:source unirule:MF_01225 .
_:432239 up:source unirule:MF_01225 .
_:432240 up:source unirule:MF_01225 .
?this up:annotation ?annotation1 ,
?annotation2 ,
?annotation4 ,
?annotation5 ,
?annotation6 ;
up:classifiedWith GO:0005525 ,
GO:0006777 ,
GO:0051539 ,
GO:0061798 ,
GO:1904047 ,
keyword:342 ,
keyword:408 ,
keyword:411 ,
keyword:456 ,
keyword:479 ,
keyword:4 ,
keyword:501 ,
keyword:547 ,
keyword:949 .
?gene0 skos:prefLabel 'moaA' .
?annotation1 a up:Function_Annotation ;
rdfs:comment "Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8-dihydroguanosine 5'-triphosphate." .
?annotation2 up:activity ?activity3 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity3 up:catalyticActivity ;
up:enzymeClass .
?annotation4 up:cofactor chebi:49883 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 2 [4Fe-4S] clusters. Binds 1 [4Fe-4S] cluster coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine and 1 [4Fe-4S] cluster coordinated with 3 cysteines and the GTP-derived substrate.' .
?annotation5 a up:Pathway_Annotation ;
rdfs:comment 'Cofactor biosynthesis; molybdopterin biosynthesis.' .
?annotation6 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the radical SAM superfamily. MoaA family.' .
?case7 up:alternativeName ?name9 ;
up:recommendedName ?name8 .
?name8 up:ecName '4.1.99.22' ;
up:fullName "Probable GTP 3',8-cyclase" ;
rdf:type up:Structured_Name .
?name9 up:fullName 'Molybdenum cofactor biosynthesis protein A' ;
rdf:type up:Structured_Name .
?case10 up:alternativeName ?name12 ;
up:recommendedName ?name11 .
?name11 up:ecName '4.1.99.22' ;
up:fullName "GTP 3',8-cyclase" ;
rdf:type up:Structured_Name .
?name12 up:fullName 'Molybdenum cofactor biosynthesis protein A' ;
rdf:type up:Structured_Name .
?pfs13 up:annotation ?annotation14 .
?annotation14 faldo:begin ?pfsb15 ;
faldo:end ?pfse16 ;
up:ligand ?ligand17 ;
rdf:type up:Binding_Site_Annotation .
?pfsb15 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfse16 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?ligand17 rdfs:subClassOf chebi:37565 .
?pfs20 up:annotation ?annotation21 .
?annotation21 faldo:begin ?pfsb22 ;
faldo:end ?pfse23 ;
up:ligand ?ligand24 ;
rdf:type up:Binding_Site_Annotation .
?pfsb22 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?pfse23 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?ligand24 rdfs:subClassOf chebi:49883 .
?pfs27 up:annotation ?annotation28 .
?annotation28 faldo:begin ?pfsb29 ;
faldo:end ?pfse30 ;
up:ligand ?ligand31 ;
rdf:type up:Binding_Site_Annotation .
?pfsb29 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?pfse30 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?ligand31 rdfs:subClassOf chebi:49883 .
?pfs34 up:annotation ?annotation35 .
?annotation35 faldo:begin ?pfsb36 ;
faldo:end ?pfse37 ;
up:ligand ?ligand38 ;
rdf:type up:Binding_Site_Annotation .
?pfsb36 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?pfse37 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?ligand38 rdfs:subClassOf chebi:49883 .
?pfs41 up:annotation ?annotation42 .
?annotation42 faldo:begin ?pfsb43 ;
faldo:end ?pfse44 ;
up:ligand ?ligand45 ;
rdf:type up:Binding_Site_Annotation .
?pfsb43 faldo:position ?thisPositionOn46 ;
rdf:type faldo:ExactPosition .
?pfse44 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?ligand45 rdfs:subClassOf chebi:49883 .
?pfs48 up:annotation ?annotation49 .
?annotation49 faldo:begin ?pfsb50 ;
faldo:end ?pfse51 ;
up:ligand ?ligand52 ;
rdf:type up:Binding_Site_Annotation .
?pfsb50 faldo:position ?thisPositionOn53 ;
rdf:type faldo:ExactPosition .
?pfse51 faldo:position ?thisPositionOn54 ;
rdf:type faldo:ExactPosition .
?ligand52 rdfs:subClassOf chebi:49883 .
?pfs55 up:annotation ?annotation56 .
?annotation56 faldo:begin ?pfsb57 ;
faldo:end ?pfse58 ;
up:ligand ?ligand59 ;
rdf:type up:Binding_Site_Annotation .
?pfsb57 faldo:position ?thisPositionOn60 ;
rdf:type faldo:ExactPosition .
?pfse58 faldo:position ?thisPositionOn61 ;
rdf:type faldo:ExactPosition .
?ligand59 rdfs:subClassOf chebi:49883 .
?pfs62 up:annotation ?annotation63 .
?annotation63 faldo:begin ?pfsb64 ;
faldo:end ?pfse65 ;
up:ligand ?ligand66 ;
rdf:type up:Binding_Site_Annotation .
?pfsb64 faldo:position ?thisPositionOn67 ;
rdf:type faldo:ExactPosition .
?pfse65 faldo:position ?thisPositionOn68 ;
rdf:type faldo:ExactPosition .
?ligand66 rdfs:subClassOf chebi:37565 .
?pfs69 up:annotation ?annotation70 .
?annotation70 faldo:begin ?pfsb71 ;
faldo:end ?pfse72 ;
up:ligand ?ligand73 ;
rdf:type up:Binding_Site_Annotation .
?pfsb71 faldo:position ?thisPositionOn74 ;
rdf:type faldo:ExactPosition .
?pfse72 faldo:position ?thisPositionOn75 ;
rdf:type faldo:ExactPosition .
?ligand73 rdfs:subClassOf chebi:59789 .
?pfs76 up:annotation ?annotation77 .
?annotation77 faldo:begin ?pfsb78 ;
faldo:end ?pfse79 ;
up:ligand ?ligand80 ;
rdf:type up:Binding_Site_Annotation .
?pfsb78 faldo:position ?thisPositionOn81 ;
rdf:type faldo:ExactPosition .
?pfse79 faldo:position ?thisPositionOn82 ;
rdf:type faldo:ExactPosition .
?ligand80 rdfs:subClassOf chebi:37565 .
?pfs83 up:annotation ?annotation84 .
?annotation84 faldo:begin ?pfsb85 ;
faldo:end ?pfse86 ;
up:ligand ?ligand87 ;
rdf:type up:Binding_Site_Annotation .
?pfsb85 faldo:position ?thisPositionOn88 ;
rdf:type faldo:ExactPosition .
?pfse86 faldo:position ?thisPositionOn89 ;
rdf:type faldo:ExactPosition .
?ligand87 rdfs:subClassOf chebi:59789 .
?pfs90 up:annotation ?annotation91 .
?annotation91 faldo:begin ?pfsb92 ;
faldo:end ?pfse93 ;
up:ligand ?ligand94 ;
rdf:type up:Binding_Site_Annotation .
?pfsb92 faldo:position ?thisPositionOn95 ;
rdf:type faldo:ExactPosition .
?pfse93 faldo:position ?thisPositionOn96 ;
rdf:type faldo:ExactPosition .
?ligand94 rdfs:subClassOf chebi:37565 .
?pfs97 up:annotation ?annotation98 .
?annotation98 faldo:begin ?pfsb99 ;
faldo:end ?pfse100 ;
up:ligand ?ligand101 ;
rdf:type up:Binding_Site_Annotation .
?pfsb99 faldo:position ?thisPositionOn102 ;
rdf:type faldo:ExactPosition .
?pfse100 faldo:position ?thisPositionOn103 ;
rdf:type faldo:ExactPosition .
?ligand101 rdfs:subClassOf chebi:59789 .
?pfs104 up:annotation ?annotation105 .
?annotation105 faldo:begin ?pfsb106 ;
faldo:end ?pfse107 ;
up:ligand ?ligand108 ;
rdf:type up:Binding_Site_Annotation .
?pfsb106 faldo:position ?thisPositionOn109 ;
rdf:type faldo:ExactPosition .
?pfse107 faldo:position ?thisPositionOn110 ;
rdf:type faldo:ExactPosition .
?ligand108 rdfs:subClassOf chebi:37565 .
?pfs111 up:annotation ?annotation112 .
?annotation112 faldo:begin ?pfsb113 ;
faldo:end ?pfse114 ;
up:ligand ?ligand115 ;
rdf:type up:Binding_Site_Annotation .
?pfsb113 faldo:position ?thisPositionOn116 ;
rdf:type faldo:ExactPosition .
?pfse114 faldo:position ?thisPositionOn117 ;
rdf:type faldo:ExactPosition .
?ligand115 rdfs:subClassOf chebi:59789 .
?pfs118 up:annotation ?annotation119 .
?annotation119 faldo:begin ?pfsb120 ;
faldo:end ?pfse121 ;
up:ligand ?ligand122 ;
rdf:type up:Binding_Site_Annotation .
?pfsb120 faldo:position ?thisPositionOn123 ;
rdf:type faldo:ExactPosition .
?pfse121 faldo:position ?thisPositionOn124 ;
rdf:type faldo:ExactPosition .
?ligand122 rdfs:subClassOf chebi:37565 .
?pfs125 up:annotation ?annotation126 .
?annotation126 faldo:begin ?pfsb127 ;
faldo:end ?pfse128 ;
up:ligand ?ligand129 ;
rdf:type up:Binding_Site_Annotation .
?pfsb127 faldo:position ?thisPositionOn130 ;
rdf:type faldo:ExactPosition .
?pfse128 faldo:position ?thisPositionOn131 ;
rdf:type faldo:ExactPosition .
?ligand129 rdfs:subClassOf chebi:49883 .
?pfs132 up:annotation ?annotation133 .
?annotation133 faldo:begin ?pfsb134 ;
faldo:end ?pfse135 ;
up:ligand ?ligand136 ;
rdf:type up:Binding_Site_Annotation .
?pfsb134 faldo:position ?thisPositionOn137 ;
rdf:type faldo:ExactPosition .
?pfse135 faldo:position ?thisPositionOn138 ;
rdf:type faldo:ExactPosition .
?ligand136 rdfs:subClassOf chebi:49883 .
?pfs139 up:annotation ?annotation140 .
?annotation140 faldo:begin ?pfsb141 ;
faldo:end ?pfse142 ;
up:ligand ?ligand143 ;
rdf:type up:Binding_Site_Annotation .
?pfsb141 faldo:position ?thisPositionOn144 ;
rdf:type faldo:ExactPosition .
?pfse142 faldo:position ?thisPositionOn145 ;
rdf:type faldo:ExactPosition .
?ligand143 rdfs:subClassOf chebi:49883 .
?pfs146 up:annotation ?annotation147 .
?annotation147 faldo:begin ?pfsb148 ;
faldo:end ?pfse149 ;
up:ligand ?ligand150 ;
rdf:type up:Binding_Site_Annotation .
?pfsb148 faldo:position ?thisPositionOn151 ;
rdf:type faldo:ExactPosition .
?pfse149 faldo:position ?thisPositionOn152 ;
rdf:type faldo:ExactPosition .
?ligand150 rdfs:subClassOf chebi:49883 .
?pfs153 up:annotation ?annotation154 .
?annotation154 faldo:begin ?pfsb155 ;
faldo:end ?pfse156 ;
up:ligand ?ligand157 ;
rdf:type up:Binding_Site_Annotation .
?pfsb155 faldo:position ?thisPositionOn158 ;
rdf:type faldo:ExactPosition .
?pfse156 faldo:position ?thisPositionOn159 ;
rdf:type faldo:ExactPosition .
?ligand157 rdfs:subClassOf chebi:49883 .
?pfs160 up:annotation ?annotation161 .
?annotation161 faldo:begin ?pfsb162 ;
faldo:end ?pfse163 ;
up:ligand ?ligand164 ;
rdf:type up:Binding_Site_Annotation .
?pfsb162 faldo:position ?thisPositionOn165 ;
rdf:type faldo:ExactPosition .
?pfse163 faldo:position ?thisPositionOn166 ;
rdf:type faldo:ExactPosition .
?ligand164 rdfs:subClassOf chebi:49883 .
?pfs167 up:annotation ?annotation168 .
?annotation168 faldo:begin ?pfsb169 ;
faldo:end ?pfse170 ;
up:ligand ?ligand171 ;
rdf:type up:Binding_Site_Annotation .
?pfsb169 faldo:position ?thisPositionOn172 ;
rdf:type faldo:ExactPosition .
?pfse170 faldo:position ?thisPositionOn173 ;
rdf:type faldo:ExactPosition .
?ligand171 rdfs:subClassOf chebi:37565 .
?pfs174 up:annotation ?annotation175 .
?annotation175 faldo:begin ?pfsb176 ;
faldo:end ?pfse177 ;
up:ligand ?ligand178 ;
rdf:type up:Binding_Site_Annotation .
?pfsb176 faldo:position ?thisPositionOn179 ;
rdf:type faldo:ExactPosition .
?pfse177 faldo:position ?thisPositionOn180 ;
rdf:type faldo:ExactPosition .
?ligand178 rdfs:subClassOf chebi:59789 .
?pfs181 up:annotation ?annotation182 .
?annotation182 faldo:begin ?pfsb183 ;
faldo:end ?pfse184 ;
up:ligand ?ligand185 ;
rdf:type up:Binding_Site_Annotation .
?pfsb183 faldo:position ?thisPositionOn186 ;
rdf:type faldo:ExactPosition .
?pfse184 faldo:position ?thisPositionOn187 ;
rdf:type faldo:ExactPosition .
?ligand185 rdfs:subClassOf chebi:37565 .
?pfs188 up:annotation ?annotation189 .
?annotation189 faldo:begin ?pfsb190 ;
faldo:end ?pfse191 ;
up:ligand ?ligand192 ;
rdf:type up:Binding_Site_Annotation .
?pfsb190 faldo:position ?thisPositionOn193 ;
rdf:type faldo:ExactPosition .
?pfse191 faldo:position ?thisPositionOn194 ;
rdf:type faldo:ExactPosition .
?ligand192 rdfs:subClassOf chebi:59789 .
?pfs195 up:annotation ?annotation196 .
?annotation196 faldo:begin ?pfsb197 ;
faldo:end ?pfse198 ;
up:ligand ?ligand199 ;
rdf:type up:Binding_Site_Annotation .
?pfsb197 faldo:position ?thisPositionOn200 ;
rdf:type faldo:ExactPosition .
?pfse198 faldo:position ?thisPositionOn201 ;
rdf:type faldo:ExactPosition .
?ligand199 rdfs:subClassOf chebi:37565 .
?pfs202 up:annotation ?annotation203 .
?annotation203 faldo:begin ?pfsb204 ;
faldo:end ?pfse205 ;
up:ligand ?ligand206 ;
rdf:type up:Binding_Site_Annotation .
?pfsb204 faldo:position ?thisPositionOn207 ;
rdf:type faldo:ExactPosition .
?pfse205 faldo:position ?thisPositionOn208 ;
rdf:type faldo:ExactPosition .
?ligand206 rdfs:subClassOf chebi:59789 .
?pfs209 up:annotation ?annotation210 .
?annotation210 faldo:begin ?pfsb211 ;
faldo:end ?pfse212 ;
up:ligand ?ligand213 ;
rdf:type up:Binding_Site_Annotation .
?pfsb211 faldo:position ?thisPositionOn214 ;
rdf:type faldo:ExactPosition .
?pfse212 faldo:position ?thisPositionOn215 ;
rdf:type faldo:ExactPosition .
?ligand213 rdfs:subClassOf chebi:37565 .
?pfs216 up:annotation ?annotation217 .
?annotation217 faldo:begin ?pfsb218 ;
faldo:end ?pfse219 ;
up:ligand ?ligand220 ;
rdf:type up:Binding_Site_Annotation .
?pfsb218 faldo:position ?thisPositionOn221 ;
rdf:type faldo:ExactPosition .
?pfse219 faldo:position ?thisPositionOn222 ;
rdf:type faldo:ExactPosition .
?ligand220 rdfs:subClassOf chebi:59789 .
_:432241 a rdf:Statement ;
up:attribution _:432187 ;
rdf:subject ?gene0 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene0 .
_:432242 a rdf:Statement ;
up:attribution _:432188 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation1 .
_:432243 a rdf:Statement ;
up:attribution _:432189 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:432244 a rdf:Statement ;
up:attribution _:432190 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:432245 a rdf:Statement ;
up:attribution _:432191 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:432246 a rdf:Statement ;
up:attribution _:432192 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:432247 a rdf:Statement ;
up:attribution _:432193 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:4 .
_:432248 a rdf:Statement ;
up:attribution _:432194 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:342 .
_:432249 a rdf:Statement ;
up:attribution _:432195 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:408 .
_:432250 a rdf:Statement ;
up:attribution _:432196 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:411 .
_:432251 a rdf:Statement ;
up:attribution _:432197 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:456 .
_:432252 a rdf:Statement ;
up:attribution _:432198 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:432253 a rdf:Statement ;
up:attribution _:432199 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:501 .
_:432254 a rdf:Statement ;
up:attribution _:432200 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:432255 a rdf:Statement ;
up:attribution _:432201 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:949 .
_:432256 a rdf:Statement ;
up:attribution _:432202 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005525 .
_:432257 a rdf:Statement ;
up:attribution _:432203 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0051539 .
_:432258 a rdf:Statement ;
up:attribution _:432204 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0061798 .
_:432259 a rdf:Statement ;
up:attribution _:432205 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:1904047 .
_:432260 a rdf:Statement ;
up:attribution _:432206 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006777 .
_:432261 a rdf:Statement ;
up:attribution _:432207 ;
rdf:subject ?case7 ;
rdf:predicate up:recommendedName ;
rdf:object ?name8 .
_:432262 a rdf:Statement ;
up:attribution _:432208 ;
rdf:subject ?case7 ;
rdf:predicate up:alternativeName ;
rdf:object ?name9 .
_:432263 a rdf:Statement ;
up:attribution _:432209 ;
rdf:subject ?case10 ;
rdf:predicate up:recommendedName ;
rdf:object ?name11 .
_:432264 a rdf:Statement ;
up:attribution _:432210 ;
rdf:subject ?case10 ;
rdf:predicate up:alternativeName ;
rdf:object ?name12 .
_:432265 a rdf:Statement ;
up:source unirule:MF_01225 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:432266 a rdf:Statement ;
up:attribution _:432211 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:432267 a rdf:Statement ;
up:source unirule:MF_01225 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:432268 a rdf:Statement ;
up:attribution _:432212 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:432269 a rdf:Statement ;
up:source unirule:MF_01225 ;
rdf:subject ?pfs27 ;
rdf:predicate up:annotation ;
rdf:object ?annotation28 .
_:432270 a rdf:Statement ;
up:attribution _:432213 ;
rdf:subject ?pfs27 ;
rdf:predicate up:annotation ;
rdf:object ?annotation28 .
_:432271 a rdf:Statement ;
up:source unirule:MF_01225 ;
rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
_:432272 a rdf:Statement ;
up:attribution _:432214 ;
rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
_:432273 a rdf:Statement ;
up:source unirule:MF_01225 ;
rdf:subject ?pfs41 ;
rdf:predicate up:annotation ;
rdf:object ?annotation42 .
_:432274 a rdf:Statement ;
up:attribution _:432215 ;
rdf:subject ?pfs41 ;
rdf:predicate up:annotation ;
rdf:object ?annotation42 .
_:432275 a rdf:Statement ;
up:source unirule:MF_01225 ;
rdf:subject ?pfs48 ;
rdf:predicate up:annotation ;
rdf:object ?annotation49 .
_:432276 a rdf:Statement ;
up:attribution _:432216 ;
rdf:subject ?pfs48 ;
rdf:predicate up:annotation ;
rdf:object ?annotation49 .
_:432277 a rdf:Statement ;
up:source unirule:MF_01225 ;
rdf:subject ?pfs55 ;
rdf:predicate up:annotation ;
rdf:object ?annotation56 .
_:432278 a rdf:Statement ;
up:attribution _:432217 ;
rdf:subject ?pfs55 ;
rdf:predicate up:annotation ;
rdf:object ?annotation56 .
_:432279 a rdf:Statement ;
up:source unirule:MF_01225 ;
rdf:subject ?pfs62 ;
rdf:predicate up:annotation ;
rdf:object ?annotation63 .
_:432280 a rdf:Statement ;
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rdf:subject ?pfs62 ;
rdf:predicate up:annotation ;
rdf:object ?annotation63 .
_:432281 a rdf:Statement ;
up:source unirule:MF_01225 ;
rdf:subject ?pfs69 ;
rdf:predicate up:annotation ;
rdf:object ?annotation70 .
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up:attribution _:432219 ;
rdf:subject ?pfs69 ;
rdf:predicate up:annotation ;
rdf:object ?annotation70 .
_:432283 a rdf:Statement ;
up:source unirule:MF_01225 ;
rdf:subject ?pfs76 ;
rdf:predicate up:annotation ;
rdf:object ?annotation77 .
_:432284 a rdf:Statement ;
up:attribution _:432220 ;
rdf:subject ?pfs76 ;
rdf:predicate up:annotation ;
rdf:object ?annotation77 .
_:432285 a rdf:Statement ;
up:source unirule:MF_01225 ;
rdf:subject ?pfs83 ;
rdf:predicate up:annotation ;
rdf:object ?annotation84 .
_:432286 a rdf:Statement ;
up:attribution _:432221 ;
rdf:subject ?pfs83 ;
rdf:predicate up:annotation ;
rdf:object ?annotation84 .
_:432287 a rdf:Statement ;
up:source unirule:MF_01225 ;
rdf:subject ?pfs90 ;
rdf:predicate up:annotation ;
rdf:object ?annotation91 .
_:432288 a rdf:Statement ;
up:attribution _:432222 ;
rdf:subject ?pfs90 ;
rdf:predicate up:annotation ;
rdf:object ?annotation91 .
_:432289 a rdf:Statement ;
up:source unirule:MF_01225 ;
rdf:subject ?pfs97 ;
rdf:predicate up:annotation ;
rdf:object ?annotation98 .
_:432290 a rdf:Statement ;
up:attribution _:432223 ;
rdf:subject ?pfs97 ;
rdf:predicate up:annotation ;
rdf:object ?annotation98 .
_:432291 a rdf:Statement ;
up:source unirule:MF_01225 ;
rdf:subject ?pfs104 ;
rdf:predicate up:annotation ;
rdf:object ?annotation105 .
_:432292 a rdf:Statement ;
up:attribution _:432224 ;
rdf:subject ?pfs104 ;
rdf:predicate up:annotation ;
rdf:object ?annotation105 .
_:432293 a rdf:Statement ;
up:source unirule:MF_01225 ;
rdf:subject ?pfs111 ;
rdf:predicate up:annotation ;
rdf:object ?annotation112 .
_:432294 a rdf:Statement ;
up:attribution _:432225 ;
rdf:subject ?pfs111 ;
rdf:predicate up:annotation ;
rdf:object ?annotation112 .
_:432295 a rdf:Statement ;
up:source unirule:MF_01225 ;
rdf:subject ?pfs118 ;
rdf:predicate up:annotation ;
rdf:object ?annotation119 .
_:432296 a rdf:Statement ;
up:attribution _:432226 ;
rdf:subject ?pfs118 ;
rdf:predicate up:annotation ;
rdf:object ?annotation119 .
_:432297 a rdf:Statement ;
up:source unirule:MF_01225 ;
rdf:subject ?pfs125 ;
rdf:predicate up:annotation ;
rdf:object ?annotation126 .
_:432298 a rdf:Statement ;
up:attribution _:432227 ;
rdf:subject ?pfs125 ;
rdf:predicate up:annotation ;
rdf:object ?annotation126 .
_:432299 a rdf:Statement ;
up:source unirule:MF_01225 ;
rdf:subject ?pfs132 ;
rdf:predicate up:annotation ;
rdf:object ?annotation133 .
_:432300 a rdf:Statement ;
up:attribution _:432228 ;
rdf:subject ?pfs132 ;
rdf:predicate up:annotation ;
rdf:object ?annotation133 .
_:432301 a rdf:Statement ;
up:source unirule:MF_01225 ;
rdf:subject ?pfs139 ;
rdf:predicate up:annotation ;
rdf:object ?annotation140 .
_:432302 a rdf:Statement ;
up:attribution _:432229 ;
rdf:subject ?pfs139 ;
rdf:predicate up:annotation ;
rdf:object ?annotation140 .
_:432303 a rdf:Statement ;
up:source unirule:MF_01225 ;
rdf:subject ?pfs146 ;
rdf:predicate up:annotation ;
rdf:object ?annotation147 .
_:432304 a rdf:Statement ;
up:attribution _:432230 ;
rdf:subject ?pfs146 ;
rdf:predicate up:annotation ;
rdf:object ?annotation147 .
_:432305 a rdf:Statement ;
up:source unirule:MF_01225 ;
rdf:subject ?pfs153 ;
rdf:predicate up:annotation ;
rdf:object ?annotation154 .
_:432306 a rdf:Statement ;
up:attribution _:432231 ;
rdf:subject ?pfs153 ;
rdf:predicate up:annotation ;
rdf:object ?annotation154 .
_:432307 a rdf:Statement ;
up:source unirule:MF_01225 ;
rdf:subject ?pfs160 ;
rdf:predicate up:annotation ;
rdf:object ?annotation161 .
_:432308 a rdf:Statement ;
up:attribution _:432232 ;
rdf:subject ?pfs160 ;
rdf:predicate up:annotation ;
rdf:object ?annotation161 .
_:432309 a rdf:Statement ;
up:source unirule:MF_01225 ;
rdf:subject ?pfs167 ;
rdf:predicate up:annotation ;
rdf:object ?annotation168 .
_:432310 a rdf:Statement ;
up:attribution _:432233 ;
rdf:subject ?pfs167 ;
rdf:predicate up:annotation ;
rdf:object ?annotation168 .
_:432311 a rdf:Statement ;
up:source unirule:MF_01225 ;
rdf:subject ?pfs174 ;
rdf:predicate up:annotation ;
rdf:object ?annotation175 .
_:432312 a rdf:Statement ;
up:attribution _:432234 ;
rdf:subject ?pfs174 ;
rdf:predicate up:annotation ;
rdf:object ?annotation175 .
_:432313 a rdf:Statement ;
up:source unirule:MF_01225 ;
rdf:subject ?pfs181 ;
rdf:predicate up:annotation ;
rdf:object ?annotation182 .
_:432314 a rdf:Statement ;
up:attribution _:432235 ;
rdf:subject ?pfs181 ;
rdf:predicate up:annotation ;
rdf:object ?annotation182 .
_:432315 a rdf:Statement ;
up:source unirule:MF_01225 ;
rdf:subject ?pfs188 ;
rdf:predicate up:annotation ;
rdf:object ?annotation189 .
_:432316 a rdf:Statement ;
up:attribution _:432236 ;
rdf:subject ?pfs188 ;
rdf:predicate up:annotation ;
rdf:object ?annotation189 .
_:432317 a rdf:Statement ;
up:source unirule:MF_01225 ;
rdf:subject ?pfs195 ;
rdf:predicate up:annotation ;
rdf:object ?annotation196 .
_:432318 a rdf:Statement ;
up:attribution _:432237 ;
rdf:subject ?pfs195 ;
rdf:predicate up:annotation ;
rdf:object ?annotation196 .
_:432319 a rdf:Statement ;
up:source unirule:MF_01225 ;
rdf:subject ?pfs202 ;
rdf:predicate up:annotation ;
rdf:object ?annotation203 .
_:432320 a rdf:Statement ;
up:attribution _:432238 ;
rdf:subject ?pfs202 ;
rdf:predicate up:annotation ;
rdf:object ?annotation203 .
_:432321 a rdf:Statement ;
up:source unirule:MF_01225 ;
rdf:subject ?pfs209 ;
rdf:predicate up:annotation ;
rdf:object ?annotation210 .
_:432322 a rdf:Statement ;
up:attribution _:432239 ;
rdf:subject ?pfs209 ;
rdf:predicate up:annotation ;
rdf:object ?annotation210 .
_:432323 a rdf:Statement ;
up:source unirule:MF_01225 ;
rdf:subject ?pfs216 ;
rdf:predicate up:annotation ;
rdf:object ?annotation217 .
_:432324 a rdf:Statement ;
up:attribution _:432240 ;
rdf:subject ?pfs216 ;
rdf:predicate up:annotation ;
rdf:object ?annotation217 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01225
#Rule MF_01225 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-03
{
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01225_B .
?thisOrganism rdfs:subClassOf+ taxon:2 .
} UNION {
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01225_A .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
}
BIND(URI(CONCAT(STR(?this), '#MF_01225a1')) AS ?annotation1) .
BIND(URI(CONCAT(STR(?this), '#MF_01225a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01225a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01225a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01225a6')) AS ?annotation6) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch227 faldo:location ?templateMotifSequenceMatchRegionQ9V2G2228 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9V2G2230 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9V2G2MF_01225_A223 .
?templateMotifSequenceMatchRegionQ9V2G2228 faldo:begin ?templateMotifSequenceMatchBeginQ9V2G2229 .
?templateMotifSequenceMatchBeginQ9V2G2229 faldo:position ?templateMotifSequenceMatchBeginPositionQ9V2G2224 ;
faldo:reference isoform:Q9V2G2-1 .
?templateMotifSequenceProfileAlignmentOperationQ9V2G2230 edam:has_input signature:MF_01225_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch231 faldo:location ?targetMotifMatchRegionMatch232 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01225_A234 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9V2G2MF_01225_A225 .
?targetMotifMatchRegionMatch232 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01225_A233 .
?targetMotifMatchRegionMatchBeginMF_01225_A233 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01225_A226 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01225_A234 edam:has_input signature:MF_01225_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9V2G2MF_01225_A223, 1, (STRLEN(?templateMotifCigarQ9V2G2MF_01225_A223) - STRLEN(REPLACE(?templateMotifCigarQ9V2G2MF_01225_A223, CONCAT('^(?:-*[^-]){', STR(((255 - ?templateMotifSequenceMatchBeginPositionQ9V2G2224) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1235) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9V2G2MF_01225_A225, 1, (STRLEN(?targetMotifMatchCigarQ9V2G2MF_01225_A225) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2G2MF_01225_A225, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1235), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9V2G2MF_01225_A225, 1, (STRLEN(?targetMotifMatchCigarQ9V2G2MF_01225_A225) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2G2MF_01225_A225, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1235), '}'), '')))), '[^-]', ''))) AS ?step2236) .
BIND(((?step2236 + ?targetMotifMatchRegionMatchBeginPositionMF_01225_A226) - 1) AS ?thisPositionOn18) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9V2G2MF_01225_A223, 1, (STRLEN(?templateMotifCigarQ9V2G2MF_01225_A223) - STRLEN(REPLACE(?templateMotifCigarQ9V2G2MF_01225_A223, CONCAT('^(?:-*[^-]){', STR(((257 - ?templateMotifSequenceMatchBeginPositionQ9V2G2224) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1237) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9V2G2MF_01225_A225, 1, (STRLEN(?targetMotifMatchCigarQ9V2G2MF_01225_A225) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2G2MF_01225_A225, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1237), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9V2G2MF_01225_A225, 1, (STRLEN(?targetMotifMatchCigarQ9V2G2MF_01225_A225) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2G2MF_01225_A225, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1237), '}'), '')))), '[^-]', ''))) AS ?step2238) .
BIND(((?step2238 + ?targetMotifMatchRegionMatchBeginPositionMF_01225_A226) - 1) AS ?thisPositionOn19) .
BIND(?this AS ?pfs1t239) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb15) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse16) .
FILTER (REGEX('R[ARNDCQEGHILKMFPSTWYVBZJUOX]R', SUBSTR(?thisSequenceValue, ?thisPositionOn18, (?thisPositionOn19 - ?thisPositionOn18)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01225a14')) AS ?annotation14) .
BIND(?this AS ?pfs13) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch244 faldo:location ?templateMotifSequenceMatchRegionQ9V2G2245 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9V2G2247 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9V2G2MF_01225_A240 .
?templateMotifSequenceMatchRegionQ9V2G2245 faldo:begin ?templateMotifSequenceMatchBeginQ9V2G2246 .
?templateMotifSequenceMatchBeginQ9V2G2246 faldo:position ?templateMotifSequenceMatchBeginPositionQ9V2G2241 ;
faldo:reference isoform:Q9V2G2-1 .
?templateMotifSequenceProfileAlignmentOperationQ9V2G2247 edam:has_input signature:MF_01225_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch248 faldo:location ?targetMotifMatchRegionMatch249 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01225_A251 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9V2G2MF_01225_A242 .
?targetMotifMatchRegionMatch249 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01225_A250 .
?targetMotifMatchRegionMatchBeginMF_01225_A250 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01225_A243 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01225_A251 edam:has_input signature:MF_01225_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9V2G2MF_01225_A240, 1, (STRLEN(?templateMotifCigarQ9V2G2MF_01225_A240) - STRLEN(REPLACE(?templateMotifCigarQ9V2G2MF_01225_A240, CONCAT('^(?:-*[^-]){', STR(((21 - ?templateMotifSequenceMatchBeginPositionQ9V2G2241) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1252) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9V2G2MF_01225_A242, 1, (STRLEN(?targetMotifMatchCigarQ9V2G2MF_01225_A242) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2G2MF_01225_A242, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1252), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9V2G2MF_01225_A242, 1, (STRLEN(?targetMotifMatchCigarQ9V2G2MF_01225_A242) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2G2MF_01225_A242, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1252), '}'), '')))), '[^-]', ''))) AS ?step2253) .
BIND(((?step2253 + ?targetMotifMatchRegionMatchBeginPositionMF_01225_A243) - 1) AS ?thisPositionOn25) .
BIND(?thisPositionOn25 AS ?thisPositionOn26) .
BIND(?this AS ?pfs1t254) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfsb22) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfse23) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn25, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_01225a21')) AS ?annotation21) .
BIND(?this AS ?pfs20) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch259 faldo:location ?templateMotifSequenceMatchRegionQ9V2G2260 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9V2G2262 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9V2G2MF_01225_A255 .
?templateMotifSequenceMatchRegionQ9V2G2260 faldo:begin ?templateMotifSequenceMatchBeginQ9V2G2261 .
?templateMotifSequenceMatchBeginQ9V2G2261 faldo:position ?templateMotifSequenceMatchBeginPositionQ9V2G2256 ;
faldo:reference isoform:Q9V2G2-1 .
?templateMotifSequenceProfileAlignmentOperationQ9V2G2262 edam:has_input signature:MF_01225_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch263 faldo:location ?targetMotifMatchRegionMatch264 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01225_A266 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9V2G2MF_01225_A257 .
?targetMotifMatchRegionMatch264 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01225_A265 .
?targetMotifMatchRegionMatchBeginMF_01225_A265 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01225_A258 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01225_A266 edam:has_input signature:MF_01225_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9V2G2MF_01225_A255, 1, (STRLEN(?templateMotifCigarQ9V2G2MF_01225_A255) - STRLEN(REPLACE(?templateMotifCigarQ9V2G2MF_01225_A255, CONCAT('^(?:-*[^-]){', STR(((25 - ?templateMotifSequenceMatchBeginPositionQ9V2G2256) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1267) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9V2G2MF_01225_A257, 1, (STRLEN(?targetMotifMatchCigarQ9V2G2MF_01225_A257) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2G2MF_01225_A257, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1267), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9V2G2MF_01225_A257, 1, (STRLEN(?targetMotifMatchCigarQ9V2G2MF_01225_A257) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2G2MF_01225_A257, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1267), '}'), '')))), '[^-]', ''))) AS ?step2268) .
BIND(((?step2268 + ?targetMotifMatchRegionMatchBeginPositionMF_01225_A258) - 1) AS ?thisPositionOn32) .
BIND(?thisPositionOn32 AS ?thisPositionOn33) .
BIND(?this AS ?pfs1t269) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfsb29) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfse30) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn32, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_01225a28')) AS ?annotation28) .
BIND(?this AS ?pfs27) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch274 faldo:location ?templateMotifSequenceMatchRegionQ9V2G2275 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9V2G2277 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9V2G2MF_01225_A270 .
?templateMotifSequenceMatchRegionQ9V2G2275 faldo:begin ?templateMotifSequenceMatchBeginQ9V2G2276 .
?templateMotifSequenceMatchBeginQ9V2G2276 faldo:position ?templateMotifSequenceMatchBeginPositionQ9V2G2271 ;
faldo:reference isoform:Q9V2G2-1 .
?templateMotifSequenceProfileAlignmentOperationQ9V2G2277 edam:has_input signature:MF_01225_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch278 faldo:location ?targetMotifMatchRegionMatch279 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01225_A281 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9V2G2MF_01225_A272 .
?targetMotifMatchRegionMatch279 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01225_A280 .
?targetMotifMatchRegionMatchBeginMF_01225_A280 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01225_A273 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01225_A281 edam:has_input signature:MF_01225_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9V2G2MF_01225_A270, 1, (STRLEN(?templateMotifCigarQ9V2G2MF_01225_A270) - STRLEN(REPLACE(?templateMotifCigarQ9V2G2MF_01225_A270, CONCAT('^(?:-*[^-]){', STR(((28 - ?templateMotifSequenceMatchBeginPositionQ9V2G2271) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1282) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9V2G2MF_01225_A272, 1, (STRLEN(?targetMotifMatchCigarQ9V2G2MF_01225_A272) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2G2MF_01225_A272, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1282), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9V2G2MF_01225_A272, 1, (STRLEN(?targetMotifMatchCigarQ9V2G2MF_01225_A272) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2G2MF_01225_A272, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1282), '}'), '')))), '[^-]', ''))) AS ?step2283) .
BIND(((?step2283 + ?targetMotifMatchRegionMatchBeginPositionMF_01225_A273) - 1) AS ?thisPositionOn39) .
BIND(?thisPositionOn39 AS ?thisPositionOn40) .
BIND(?this AS ?pfs1t284) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfsb36) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfse37) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn39, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_01225a35')) AS ?annotation35) .
BIND(?this AS ?pfs34) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch289 faldo:location ?templateMotifSequenceMatchRegionQ9V2G2290 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9V2G2292 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9V2G2MF_01225_A285 .
?templateMotifSequenceMatchRegionQ9V2G2290 faldo:begin ?templateMotifSequenceMatchBeginQ9V2G2291 .
?templateMotifSequenceMatchBeginQ9V2G2291 faldo:position ?templateMotifSequenceMatchBeginPositionQ9V2G2286 ;
faldo:reference isoform:Q9V2G2-1 .
?templateMotifSequenceProfileAlignmentOperationQ9V2G2292 edam:has_input signature:MF_01225_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch293 faldo:location ?targetMotifMatchRegionMatch294 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01225_A296 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9V2G2MF_01225_A287 .
?targetMotifMatchRegionMatch294 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01225_A295 .
?targetMotifMatchRegionMatchBeginMF_01225_A295 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01225_A288 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01225_A296 edam:has_input signature:MF_01225_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9V2G2MF_01225_A285, 1, (STRLEN(?templateMotifCigarQ9V2G2MF_01225_A285) - STRLEN(REPLACE(?templateMotifCigarQ9V2G2MF_01225_A285, CONCAT('^(?:-*[^-]){', STR(((250 - ?templateMotifSequenceMatchBeginPositionQ9V2G2286) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1297) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9V2G2MF_01225_A287, 1, (STRLEN(?targetMotifMatchCigarQ9V2G2MF_01225_A287) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2G2MF_01225_A287, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1297), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9V2G2MF_01225_A287, 1, (STRLEN(?targetMotifMatchCigarQ9V2G2MF_01225_A287) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2G2MF_01225_A287, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1297), '}'), '')))), '[^-]', ''))) AS ?step2298) .
BIND(((?step2298 + ?targetMotifMatchRegionMatchBeginPositionMF_01225_A288) - 1) AS ?thisPositionOn46) .
BIND(?thisPositionOn46 AS ?thisPositionOn47) .
BIND(?this AS ?pfs1t299) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfsb43) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfse44) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn46, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_01225a42')) AS ?annotation42) .
BIND(?this AS ?pfs41) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch304 faldo:location ?templateMotifSequenceMatchRegionQ9V2G2305 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9V2G2307 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9V2G2MF_01225_A300 .
?templateMotifSequenceMatchRegionQ9V2G2305 faldo:begin ?templateMotifSequenceMatchBeginQ9V2G2306 .
?templateMotifSequenceMatchBeginQ9V2G2306 faldo:position ?templateMotifSequenceMatchBeginPositionQ9V2G2301 ;
faldo:reference isoform:Q9V2G2-1 .
?templateMotifSequenceProfileAlignmentOperationQ9V2G2307 edam:has_input signature:MF_01225_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch308 faldo:location ?targetMotifMatchRegionMatch309 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01225_A311 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9V2G2MF_01225_A302 .
?targetMotifMatchRegionMatch309 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01225_A310 .
?targetMotifMatchRegionMatchBeginMF_01225_A310 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01225_A303 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01225_A311 edam:has_input signature:MF_01225_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9V2G2MF_01225_A300, 1, (STRLEN(?templateMotifCigarQ9V2G2MF_01225_A300) - STRLEN(REPLACE(?templateMotifCigarQ9V2G2MF_01225_A300, CONCAT('^(?:-*[^-]){', STR(((253 - ?templateMotifSequenceMatchBeginPositionQ9V2G2301) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1312) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9V2G2MF_01225_A302, 1, (STRLEN(?targetMotifMatchCigarQ9V2G2MF_01225_A302) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2G2MF_01225_A302, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1312), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9V2G2MF_01225_A302, 1, (STRLEN(?targetMotifMatchCigarQ9V2G2MF_01225_A302) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2G2MF_01225_A302, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1312), '}'), '')))), '[^-]', ''))) AS ?step2313) .
BIND(((?step2313 + ?targetMotifMatchRegionMatchBeginPositionMF_01225_A303) - 1) AS ?thisPositionOn53) .
BIND(?thisPositionOn53 AS ?thisPositionOn54) .
BIND(?this AS ?pfs1t314) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfsb50) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfse51) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn53, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_01225a49')) AS ?annotation49) .
BIND(?this AS ?pfs48) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch319 faldo:location ?templateMotifSequenceMatchRegionQ9V2G2320 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9V2G2322 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9V2G2MF_01225_A315 .
?templateMotifSequenceMatchRegionQ9V2G2320 faldo:begin ?templateMotifSequenceMatchBeginQ9V2G2321 .
?templateMotifSequenceMatchBeginQ9V2G2321 faldo:position ?templateMotifSequenceMatchBeginPositionQ9V2G2316 ;
faldo:reference isoform:Q9V2G2-1 .
?templateMotifSequenceProfileAlignmentOperationQ9V2G2322 edam:has_input signature:MF_01225_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch323 faldo:location ?targetMotifMatchRegionMatch324 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01225_A326 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9V2G2MF_01225_A317 .
?targetMotifMatchRegionMatch324 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01225_A325 .
?targetMotifMatchRegionMatchBeginMF_01225_A325 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01225_A318 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01225_A326 edam:has_input signature:MF_01225_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9V2G2MF_01225_A315, 1, (STRLEN(?templateMotifCigarQ9V2G2MF_01225_A315) - STRLEN(REPLACE(?templateMotifCigarQ9V2G2MF_01225_A315, CONCAT('^(?:-*[^-]){', STR(((267 - ?templateMotifSequenceMatchBeginPositionQ9V2G2316) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1327) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9V2G2MF_01225_A317, 1, (STRLEN(?targetMotifMatchCigarQ9V2G2MF_01225_A317) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2G2MF_01225_A317, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1327), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9V2G2MF_01225_A317, 1, (STRLEN(?targetMotifMatchCigarQ9V2G2MF_01225_A317) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2G2MF_01225_A317, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1327), '}'), '')))), '[^-]', ''))) AS ?step2328) .
BIND(((?step2328 + ?targetMotifMatchRegionMatchBeginPositionMF_01225_A318) - 1) AS ?thisPositionOn60) .
BIND(?thisPositionOn60 AS ?thisPositionOn61) .
BIND(?this AS ?pfs1t329) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfsb57) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfse58) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn60, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_01225a56')) AS ?annotation56) .
BIND(?this AS ?pfs55) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch334 faldo:location ?templateMotifSequenceMatchRegionQ9V2G2335 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9V2G2337 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9V2G2MF_01225_A330 .
?templateMotifSequenceMatchRegionQ9V2G2335 faldo:begin ?templateMotifSequenceMatchBeginQ9V2G2336 .
?templateMotifSequenceMatchBeginQ9V2G2336 faldo:position ?templateMotifSequenceMatchBeginPositionQ9V2G2331 ;
faldo:reference isoform:Q9V2G2-1 .
?templateMotifSequenceProfileAlignmentOperationQ9V2G2337 edam:has_input signature:MF_01225_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch338 faldo:location ?targetMotifMatchRegionMatch339 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01225_A341 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9V2G2MF_01225_A332 .
?targetMotifMatchRegionMatch339 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01225_A340 .
?targetMotifMatchRegionMatchBeginMF_01225_A340 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01225_A333 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01225_A341 edam:has_input signature:MF_01225_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9V2G2MF_01225_A330, 1, (STRLEN(?templateMotifCigarQ9V2G2MF_01225_A330) - STRLEN(REPLACE(?templateMotifCigarQ9V2G2MF_01225_A330, CONCAT('^(?:-*[^-]){', STR(((14 - ?templateMotifSequenceMatchBeginPositionQ9V2G2331) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1342) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9V2G2MF_01225_A332, 1, (STRLEN(?targetMotifMatchCigarQ9V2G2MF_01225_A332) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2G2MF_01225_A332, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1342), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9V2G2MF_01225_A332, 1, (STRLEN(?targetMotifMatchCigarQ9V2G2MF_01225_A332) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2G2MF_01225_A332, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1342), '}'), '')))), '[^-]', ''))) AS ?step2343) .
BIND(((?step2343 + ?targetMotifMatchRegionMatchBeginPositionMF_01225_A333) - 1) AS ?thisPositionOn67) .
BIND(?thisPositionOn67 AS ?thisPositionOn68) .
BIND(?this AS ?pfs1t344) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfsb64) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn68))) AS ?pfse65) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn67, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01225a63')) AS ?annotation63) .
BIND(?this AS ?pfs62) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch349 faldo:location ?templateMotifSequenceMatchRegionQ9V2G2350 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9V2G2352 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9V2G2MF_01225_A345 .
?templateMotifSequenceMatchRegionQ9V2G2350 faldo:begin ?templateMotifSequenceMatchBeginQ9V2G2351 .
?templateMotifSequenceMatchBeginQ9V2G2351 faldo:position ?templateMotifSequenceMatchBeginPositionQ9V2G2346 ;
faldo:reference isoform:Q9V2G2-1 .
?templateMotifSequenceProfileAlignmentOperationQ9V2G2352 edam:has_input signature:MF_01225_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch353 faldo:location ?targetMotifMatchRegionMatch354 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01225_A356 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9V2G2MF_01225_A347 .
?targetMotifMatchRegionMatch354 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01225_A355 .
?targetMotifMatchRegionMatchBeginMF_01225_A355 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01225_A348 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01225_A356 edam:has_input signature:MF_01225_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9V2G2MF_01225_A345, 1, (STRLEN(?templateMotifCigarQ9V2G2MF_01225_A345) - STRLEN(REPLACE(?templateMotifCigarQ9V2G2MF_01225_A345, CONCAT('^(?:-*[^-]){', STR(((27 - ?templateMotifSequenceMatchBeginPositionQ9V2G2346) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1357) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9V2G2MF_01225_A347, 1, (STRLEN(?targetMotifMatchCigarQ9V2G2MF_01225_A347) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2G2MF_01225_A347, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1357), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9V2G2MF_01225_A347, 1, (STRLEN(?targetMotifMatchCigarQ9V2G2MF_01225_A347) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2G2MF_01225_A347, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1357), '}'), '')))), '[^-]', ''))) AS ?step2358) .
BIND(((?step2358 + ?targetMotifMatchRegionMatchBeginPositionMF_01225_A348) - 1) AS ?thisPositionOn74) .
BIND(?thisPositionOn74 AS ?thisPositionOn75) .
BIND(?this AS ?pfs1t359) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn74))) AS ?pfsb71) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn75))) AS ?pfse72) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn74, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_01225a70')) AS ?annotation70) .
BIND(?this AS ?pfs69) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch364 faldo:location ?templateMotifSequenceMatchRegionQ9V2G2365 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9V2G2367 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9V2G2MF_01225_A360 .
?templateMotifSequenceMatchRegionQ9V2G2365 faldo:begin ?templateMotifSequenceMatchBeginQ9V2G2366 .
?templateMotifSequenceMatchBeginQ9V2G2366 faldo:position ?templateMotifSequenceMatchBeginPositionQ9V2G2361 ;
faldo:reference isoform:Q9V2G2-1 .
?templateMotifSequenceProfileAlignmentOperationQ9V2G2367 edam:has_input signature:MF_01225_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch368 faldo:location ?targetMotifMatchRegionMatch369 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01225_A371 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9V2G2MF_01225_A362 .
?targetMotifMatchRegionMatch369 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01225_A370 .
?targetMotifMatchRegionMatchBeginMF_01225_A370 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01225_A363 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01225_A371 edam:has_input signature:MF_01225_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9V2G2MF_01225_A360, 1, (STRLEN(?templateMotifCigarQ9V2G2MF_01225_A360) - STRLEN(REPLACE(?templateMotifCigarQ9V2G2MF_01225_A360, CONCAT('^(?:-*[^-]){', STR(((61 - ?templateMotifSequenceMatchBeginPositionQ9V2G2361) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1372) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9V2G2MF_01225_A362, 1, (STRLEN(?targetMotifMatchCigarQ9V2G2MF_01225_A362) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2G2MF_01225_A362, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1372), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9V2G2MF_01225_A362, 1, (STRLEN(?targetMotifMatchCigarQ9V2G2MF_01225_A362) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2G2MF_01225_A362, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1372), '}'), '')))), '[^-]', ''))) AS ?step2373) .
BIND(((?step2373 + ?targetMotifMatchRegionMatchBeginPositionMF_01225_A363) - 1) AS ?thisPositionOn81) .
BIND(?thisPositionOn81 AS ?thisPositionOn82) .
BIND(?this AS ?pfs1t374) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn81))) AS ?pfsb78) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn82))) AS ?pfse79) .
FILTER (REGEX('[KR]', SUBSTR(?thisSequenceValue, ?thisPositionOn81, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01225a77')) AS ?annotation77) .
BIND(?this AS ?pfs76) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch379 faldo:location ?templateMotifSequenceMatchRegionQ9V2G2380 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9V2G2382 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9V2G2MF_01225_A375 .
?templateMotifSequenceMatchRegionQ9V2G2380 faldo:begin ?templateMotifSequenceMatchBeginQ9V2G2381 .
?templateMotifSequenceMatchBeginQ9V2G2381 faldo:position ?templateMotifSequenceMatchBeginPositionQ9V2G2376 ;
faldo:reference isoform:Q9V2G2-1 .
?templateMotifSequenceProfileAlignmentOperationQ9V2G2382 edam:has_input signature:MF_01225_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch383 faldo:location ?targetMotifMatchRegionMatch384 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01225_A386 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9V2G2MF_01225_A377 .
?targetMotifMatchRegionMatch384 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01225_A385 .
?targetMotifMatchRegionMatchBeginMF_01225_A385 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01225_A378 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01225_A386 edam:has_input signature:MF_01225_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9V2G2MF_01225_A375, 1, (STRLEN(?templateMotifCigarQ9V2G2MF_01225_A375) - STRLEN(REPLACE(?templateMotifCigarQ9V2G2MF_01225_A375, CONCAT('^(?:-*[^-]){', STR(((65 - ?templateMotifSequenceMatchBeginPositionQ9V2G2376) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1387) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9V2G2MF_01225_A377, 1, (STRLEN(?targetMotifMatchCigarQ9V2G2MF_01225_A377) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2G2MF_01225_A377, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1387), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9V2G2MF_01225_A377, 1, (STRLEN(?targetMotifMatchCigarQ9V2G2MF_01225_A377) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2G2MF_01225_A377, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1387), '}'), '')))), '[^-]', ''))) AS ?step2388) .
BIND(((?step2388 + ?targetMotifMatchRegionMatchBeginPositionMF_01225_A378) - 1) AS ?thisPositionOn88) .
BIND(?thisPositionOn88 AS ?thisPositionOn89) .
BIND(?this AS ?pfs1t389) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn88))) AS ?pfsb85) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn89))) AS ?pfse86) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn88, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_01225a84')) AS ?annotation84) .
BIND(?this AS ?pfs83) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch394 faldo:location ?templateMotifSequenceMatchRegionQ9V2G2395 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9V2G2397 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9V2G2MF_01225_A390 .
?templateMotifSequenceMatchRegionQ9V2G2395 faldo:begin ?templateMotifSequenceMatchBeginQ9V2G2396 .
?templateMotifSequenceMatchBeginQ9V2G2396 faldo:position ?templateMotifSequenceMatchBeginPositionQ9V2G2391 ;
faldo:reference isoform:Q9V2G2-1 .
?templateMotifSequenceProfileAlignmentOperationQ9V2G2397 edam:has_input signature:MF_01225_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch398 faldo:location ?targetMotifMatchRegionMatch399 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01225_A401 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9V2G2MF_01225_A392 .
?targetMotifMatchRegionMatch399 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01225_A400 .
?targetMotifMatchRegionMatchBeginMF_01225_A400 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01225_A393 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01225_A401 edam:has_input signature:MF_01225_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9V2G2MF_01225_A390, 1, (STRLEN(?templateMotifCigarQ9V2G2MF_01225_A390) - STRLEN(REPLACE(?templateMotifCigarQ9V2G2MF_01225_A390, CONCAT('^(?:-*[^-]){', STR(((90 - ?templateMotifSequenceMatchBeginPositionQ9V2G2391) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1402) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9V2G2MF_01225_A392, 1, (STRLEN(?targetMotifMatchCigarQ9V2G2MF_01225_A392) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2G2MF_01225_A392, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1402), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9V2G2MF_01225_A392, 1, (STRLEN(?targetMotifMatchCigarQ9V2G2MF_01225_A392) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2G2MF_01225_A392, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1402), '}'), '')))), '[^-]', ''))) AS ?step2403) .
BIND(((?step2403 + ?targetMotifMatchRegionMatchBeginPositionMF_01225_A393) - 1) AS ?thisPositionOn95) .
BIND(?thisPositionOn95 AS ?thisPositionOn96) .
BIND(?this AS ?pfs1t404) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn95))) AS ?pfsb92) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn96))) AS ?pfse93) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn95, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_01225a91')) AS ?annotation91) .
BIND(?this AS ?pfs90) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch409 faldo:location ?templateMotifSequenceMatchRegionQ9V2G2410 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9V2G2412 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9V2G2MF_01225_A405 .
?templateMotifSequenceMatchRegionQ9V2G2410 faldo:begin ?templateMotifSequenceMatchBeginQ9V2G2411 .
?templateMotifSequenceMatchBeginQ9V2G2411 faldo:position ?templateMotifSequenceMatchBeginPositionQ9V2G2406 ;
faldo:reference isoform:Q9V2G2-1 .
?templateMotifSequenceProfileAlignmentOperationQ9V2G2412 edam:has_input signature:MF_01225_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch413 faldo:location ?targetMotifMatchRegionMatch414 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01225_A416 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9V2G2MF_01225_A407 .
?targetMotifMatchRegionMatch414 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01225_A415 .
?targetMotifMatchRegionMatchBeginMF_01225_A415 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01225_A408 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01225_A416 edam:has_input signature:MF_01225_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9V2G2MF_01225_A405, 1, (STRLEN(?templateMotifCigarQ9V2G2MF_01225_A405) - STRLEN(REPLACE(?templateMotifCigarQ9V2G2MF_01225_A405, CONCAT('^(?:-*[^-]){', STR(((114 - ?templateMotifSequenceMatchBeginPositionQ9V2G2406) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1417) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9V2G2MF_01225_A407, 1, (STRLEN(?targetMotifMatchCigarQ9V2G2MF_01225_A407) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2G2MF_01225_A407, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1417), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9V2G2MF_01225_A407, 1, (STRLEN(?targetMotifMatchCigarQ9V2G2MF_01225_A407) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2G2MF_01225_A407, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1417), '}'), '')))), '[^-]', ''))) AS ?step2418) .
BIND(((?step2418 + ?targetMotifMatchRegionMatchBeginPositionMF_01225_A408) - 1) AS ?thisPositionOn102) .
BIND(?thisPositionOn102 AS ?thisPositionOn103) .
BIND(?this AS ?pfs1t419) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn102))) AS ?pfsb99) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn103))) AS ?pfse100) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn102, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_01225a98')) AS ?annotation98) .
BIND(?this AS ?pfs97) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch424 faldo:location ?templateMotifSequenceMatchRegionQ9V2G2425 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9V2G2427 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9V2G2MF_01225_A420 .
?templateMotifSequenceMatchRegionQ9V2G2425 faldo:begin ?templateMotifSequenceMatchBeginQ9V2G2426 .
?templateMotifSequenceMatchBeginQ9V2G2426 faldo:position ?templateMotifSequenceMatchBeginPositionQ9V2G2421 ;
faldo:reference isoform:Q9V2G2-1 .
?templateMotifSequenceProfileAlignmentOperationQ9V2G2427 edam:has_input signature:MF_01225_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch428 faldo:location ?targetMotifMatchRegionMatch429 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01225_A431 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9V2G2MF_01225_A422 .
?targetMotifMatchRegionMatch429 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01225_A430 .
?targetMotifMatchRegionMatchBeginMF_01225_A430 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01225_A423 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01225_A431 edam:has_input signature:MF_01225_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9V2G2MF_01225_A420, 1, (STRLEN(?templateMotifCigarQ9V2G2MF_01225_A420) - STRLEN(REPLACE(?templateMotifCigarQ9V2G2MF_01225_A420, CONCAT('^(?:-*[^-]){', STR(((150 - ?templateMotifSequenceMatchBeginPositionQ9V2G2421) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1432) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9V2G2MF_01225_A422, 1, (STRLEN(?targetMotifMatchCigarQ9V2G2MF_01225_A422) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2G2MF_01225_A422, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1432), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9V2G2MF_01225_A422, 1, (STRLEN(?targetMotifMatchCigarQ9V2G2MF_01225_A422) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2G2MF_01225_A422, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1432), '}'), '')))), '[^-]', ''))) AS ?step2433) .
BIND(((?step2433 + ?targetMotifMatchRegionMatchBeginPositionMF_01225_A423) - 1) AS ?thisPositionOn109) .
BIND(?thisPositionOn109 AS ?thisPositionOn110) .
BIND(?this AS ?pfs1t434) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn109))) AS ?pfsb106) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn110))) AS ?pfse107) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn109, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01225a105')) AS ?annotation105) .
BIND(?this AS ?pfs104) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch439 faldo:location ?templateMotifSequenceMatchRegionQ9V2G2440 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9V2G2442 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9V2G2MF_01225_A435 .
?templateMotifSequenceMatchRegionQ9V2G2440 faldo:begin ?templateMotifSequenceMatchBeginQ9V2G2441 .
?templateMotifSequenceMatchBeginQ9V2G2441 faldo:position ?templateMotifSequenceMatchBeginPositionQ9V2G2436 ;
faldo:reference isoform:Q9V2G2-1 .
?templateMotifSequenceProfileAlignmentOperationQ9V2G2442 edam:has_input signature:MF_01225_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch443 faldo:location ?targetMotifMatchRegionMatch444 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01225_A446 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9V2G2MF_01225_A437 .
?targetMotifMatchRegionMatch444 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01225_A445 .
?targetMotifMatchRegionMatchBeginMF_01225_A445 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01225_A438 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01225_A446 edam:has_input signature:MF_01225_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9V2G2MF_01225_A435, 1, (STRLEN(?templateMotifCigarQ9V2G2MF_01225_A435) - STRLEN(REPLACE(?templateMotifCigarQ9V2G2MF_01225_A435, CONCAT('^(?:-*[^-]){', STR(((189 - ?templateMotifSequenceMatchBeginPositionQ9V2G2436) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1447) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9V2G2MF_01225_A437, 1, (STRLEN(?targetMotifMatchCigarQ9V2G2MF_01225_A437) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2G2MF_01225_A437, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1447), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9V2G2MF_01225_A437, 1, (STRLEN(?targetMotifMatchCigarQ9V2G2MF_01225_A437) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2G2MF_01225_A437, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1447), '}'), '')))), '[^-]', ''))) AS ?step2448) .
BIND(((?step2448 + ?targetMotifMatchRegionMatchBeginPositionMF_01225_A438) - 1) AS ?thisPositionOn116) .
BIND(?thisPositionOn116 AS ?thisPositionOn117) .
BIND(?this AS ?pfs1t449) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn116))) AS ?pfsb113) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn117))) AS ?pfse114) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn116, 1) = 'M')) .
BIND(URI(CONCAT(STR(?this), '#MF_01225a112')) AS ?annotation112) .
BIND(?this AS ?pfs111) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch454 faldo:location ?templateMotifSequenceMatchRegionP69848455 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP69848457 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP69848MF_01225_B450 .
?templateMotifSequenceMatchRegionP69848455 faldo:begin ?templateMotifSequenceMatchBeginP69848456 .
?templateMotifSequenceMatchBeginP69848456 faldo:position ?templateMotifSequenceMatchBeginPositionP69848451 ;
faldo:reference isoform:P69848-1 .
?templateMotifSequenceProfileAlignmentOperationP69848457 edam:has_input signature:MF_01225_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch458 faldo:location ?targetMotifMatchRegionMatch459 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01225_B461 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP69848MF_01225_B452 .
?targetMotifMatchRegionMatch459 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01225_B460 .
?targetMotifMatchRegionMatchBeginMF_01225_B460 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01225_B453 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01225_B461 edam:has_input signature:MF_01225_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69848MF_01225_B450, 1, (STRLEN(?templateMotifCigarP69848MF_01225_B450) - STRLEN(REPLACE(?templateMotifCigarP69848MF_01225_B450, CONCAT('^(?:-*[^-]){', STR(((266 - ?templateMotifSequenceMatchBeginPositionP69848451) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1462) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69848MF_01225_B452, 1, (STRLEN(?targetMotifMatchCigarP69848MF_01225_B452) - STRLEN(REPLACE(?targetMotifMatchCigarP69848MF_01225_B452, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1462), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69848MF_01225_B452, 1, (STRLEN(?targetMotifMatchCigarP69848MF_01225_B452) - STRLEN(REPLACE(?targetMotifMatchCigarP69848MF_01225_B452, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1462), '}'), '')))), '[^-]', ''))) AS ?step2463) .
BIND(((?step2463 + ?targetMotifMatchRegionMatchBeginPositionMF_01225_B453) - 1) AS ?thisPositionOn123) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69848MF_01225_B450, 1, (STRLEN(?templateMotifCigarP69848MF_01225_B450) - STRLEN(REPLACE(?templateMotifCigarP69848MF_01225_B450, CONCAT('^(?:-*[^-]){', STR(((268 - ?templateMotifSequenceMatchBeginPositionP69848451) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1464) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69848MF_01225_B452, 1, (STRLEN(?targetMotifMatchCigarP69848MF_01225_B452) - STRLEN(REPLACE(?targetMotifMatchCigarP69848MF_01225_B452, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1464), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69848MF_01225_B452, 1, (STRLEN(?targetMotifMatchCigarP69848MF_01225_B452) - STRLEN(REPLACE(?targetMotifMatchCigarP69848MF_01225_B452, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1464), '}'), '')))), '[^-]', ''))) AS ?step2465) .
BIND(((?step2465 + ?targetMotifMatchRegionMatchBeginPositionMF_01225_B453) - 1) AS ?thisPositionOn124) .
BIND(?this AS ?pfs2t466) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn123))) AS ?pfsb120) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn124))) AS ?pfse121) .
FILTER (REGEX('[RK][ARNDCQEGHILKMFPSTWYVBZJUOX]R', SUBSTR(?thisSequenceValue, ?thisPositionOn123, (?thisPositionOn124 - ?thisPositionOn123)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01225a119')) AS ?annotation119) .
BIND(?this AS ?pfs118) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch471 faldo:location ?templateMotifSequenceMatchRegionP69848472 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP69848474 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP69848MF_01225_B467 .
?templateMotifSequenceMatchRegionP69848472 faldo:begin ?templateMotifSequenceMatchBeginP69848473 .
?templateMotifSequenceMatchBeginP69848473 faldo:position ?templateMotifSequenceMatchBeginPositionP69848468 ;
faldo:reference isoform:P69848-1 .
?templateMotifSequenceProfileAlignmentOperationP69848474 edam:has_input signature:MF_01225_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch475 faldo:location ?targetMotifMatchRegionMatch476 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01225_B478 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP69848MF_01225_B469 .
?targetMotifMatchRegionMatch476 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01225_B477 .
?targetMotifMatchRegionMatchBeginMF_01225_B477 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01225_B470 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01225_B478 edam:has_input signature:MF_01225_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69848MF_01225_B467, 1, (STRLEN(?templateMotifCigarP69848MF_01225_B467) - STRLEN(REPLACE(?templateMotifCigarP69848MF_01225_B467, CONCAT('^(?:-*[^-]){', STR(((24 - ?templateMotifSequenceMatchBeginPositionP69848468) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1479) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69848MF_01225_B469, 1, (STRLEN(?targetMotifMatchCigarP69848MF_01225_B469) - STRLEN(REPLACE(?targetMotifMatchCigarP69848MF_01225_B469, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1479), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69848MF_01225_B469, 1, (STRLEN(?targetMotifMatchCigarP69848MF_01225_B469) - STRLEN(REPLACE(?targetMotifMatchCigarP69848MF_01225_B469, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1479), '}'), '')))), '[^-]', ''))) AS ?step2480) .
BIND(((?step2480 + ?targetMotifMatchRegionMatchBeginPositionMF_01225_B470) - 1) AS ?thisPositionOn130) .
BIND(?thisPositionOn130 AS ?thisPositionOn131) .
BIND(?this AS ?pfs2t481) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn130))) AS ?pfsb127) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn131))) AS ?pfse128) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn130, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_01225a126')) AS ?annotation126) .
BIND(?this AS ?pfs125) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch486 faldo:location ?templateMotifSequenceMatchRegionP69848487 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP69848489 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP69848MF_01225_B482 .
?templateMotifSequenceMatchRegionP69848487 faldo:begin ?templateMotifSequenceMatchBeginP69848488 .
?templateMotifSequenceMatchBeginP69848488 faldo:position ?templateMotifSequenceMatchBeginPositionP69848483 ;
faldo:reference isoform:P69848-1 .
?templateMotifSequenceProfileAlignmentOperationP69848489 edam:has_input signature:MF_01225_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch490 faldo:location ?targetMotifMatchRegionMatch491 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01225_B493 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP69848MF_01225_B484 .
?targetMotifMatchRegionMatch491 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01225_B492 .
?targetMotifMatchRegionMatchBeginMF_01225_B492 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01225_B485 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01225_B493 edam:has_input signature:MF_01225_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69848MF_01225_B482, 1, (STRLEN(?templateMotifCigarP69848MF_01225_B482) - STRLEN(REPLACE(?templateMotifCigarP69848MF_01225_B482, CONCAT('^(?:-*[^-]){', STR(((28 - ?templateMotifSequenceMatchBeginPositionP69848483) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1494) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69848MF_01225_B484, 1, (STRLEN(?targetMotifMatchCigarP69848MF_01225_B484) - STRLEN(REPLACE(?targetMotifMatchCigarP69848MF_01225_B484, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1494), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69848MF_01225_B484, 1, (STRLEN(?targetMotifMatchCigarP69848MF_01225_B484) - STRLEN(REPLACE(?targetMotifMatchCigarP69848MF_01225_B484, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1494), '}'), '')))), '[^-]', ''))) AS ?step2495) .
BIND(((?step2495 + ?targetMotifMatchRegionMatchBeginPositionMF_01225_B485) - 1) AS ?thisPositionOn137) .
BIND(?thisPositionOn137 AS ?thisPositionOn138) .
BIND(?this AS ?pfs2t496) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn137))) AS ?pfsb134) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn138))) AS ?pfse135) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn137, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_01225a133')) AS ?annotation133) .
BIND(?this AS ?pfs132) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch501 faldo:location ?templateMotifSequenceMatchRegionP69848502 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP69848504 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP69848MF_01225_B497 .
?templateMotifSequenceMatchRegionP69848502 faldo:begin ?templateMotifSequenceMatchBeginP69848503 .
?templateMotifSequenceMatchBeginP69848503 faldo:position ?templateMotifSequenceMatchBeginPositionP69848498 ;
faldo:reference isoform:P69848-1 .
?templateMotifSequenceProfileAlignmentOperationP69848504 edam:has_input signature:MF_01225_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch505 faldo:location ?targetMotifMatchRegionMatch506 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01225_B508 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP69848MF_01225_B499 .
?targetMotifMatchRegionMatch506 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01225_B507 .
?targetMotifMatchRegionMatchBeginMF_01225_B507 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01225_B500 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01225_B508 edam:has_input signature:MF_01225_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69848MF_01225_B497, 1, (STRLEN(?templateMotifCigarP69848MF_01225_B497) - STRLEN(REPLACE(?templateMotifCigarP69848MF_01225_B497, CONCAT('^(?:-*[^-]){', STR(((31 - ?templateMotifSequenceMatchBeginPositionP69848498) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1509) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69848MF_01225_B499, 1, (STRLEN(?targetMotifMatchCigarP69848MF_01225_B499) - STRLEN(REPLACE(?targetMotifMatchCigarP69848MF_01225_B499, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1509), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69848MF_01225_B499, 1, (STRLEN(?targetMotifMatchCigarP69848MF_01225_B499) - STRLEN(REPLACE(?targetMotifMatchCigarP69848MF_01225_B499, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1509), '}'), '')))), '[^-]', ''))) AS ?step2510) .
BIND(((?step2510 + ?targetMotifMatchRegionMatchBeginPositionMF_01225_B500) - 1) AS ?thisPositionOn144) .
BIND(?thisPositionOn144 AS ?thisPositionOn145) .
BIND(?this AS ?pfs2t511) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn144))) AS ?pfsb141) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn145))) AS ?pfse142) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn144, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_01225a140')) AS ?annotation140) .
BIND(?this AS ?pfs139) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch516 faldo:location ?templateMotifSequenceMatchRegionP69848517 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP69848519 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP69848MF_01225_B512 .
?templateMotifSequenceMatchRegionP69848517 faldo:begin ?templateMotifSequenceMatchBeginP69848518 .
?templateMotifSequenceMatchBeginP69848518 faldo:position ?templateMotifSequenceMatchBeginPositionP69848513 ;
faldo:reference isoform:P69848-1 .
?templateMotifSequenceProfileAlignmentOperationP69848519 edam:has_input signature:MF_01225_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch520 faldo:location ?targetMotifMatchRegionMatch521 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01225_B523 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP69848MF_01225_B514 .
?targetMotifMatchRegionMatch521 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01225_B522 .
?targetMotifMatchRegionMatchBeginMF_01225_B522 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01225_B515 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01225_B523 edam:has_input signature:MF_01225_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69848MF_01225_B512, 1, (STRLEN(?templateMotifCigarP69848MF_01225_B512) - STRLEN(REPLACE(?templateMotifCigarP69848MF_01225_B512, CONCAT('^(?:-*[^-]){', STR(((261 - ?templateMotifSequenceMatchBeginPositionP69848513) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1524) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69848MF_01225_B514, 1, (STRLEN(?targetMotifMatchCigarP69848MF_01225_B514) - STRLEN(REPLACE(?targetMotifMatchCigarP69848MF_01225_B514, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1524), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69848MF_01225_B514, 1, (STRLEN(?targetMotifMatchCigarP69848MF_01225_B514) - STRLEN(REPLACE(?targetMotifMatchCigarP69848MF_01225_B514, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1524), '}'), '')))), '[^-]', ''))) AS ?step2525) .
BIND(((?step2525 + ?targetMotifMatchRegionMatchBeginPositionMF_01225_B515) - 1) AS ?thisPositionOn151) .
BIND(?thisPositionOn151 AS ?thisPositionOn152) .
BIND(?this AS ?pfs2t526) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn151))) AS ?pfsb148) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn152))) AS ?pfse149) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn151, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_01225a147')) AS ?annotation147) .
BIND(?this AS ?pfs146) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch531 faldo:location ?templateMotifSequenceMatchRegionP69848532 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP69848534 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP69848MF_01225_B527 .
?templateMotifSequenceMatchRegionP69848532 faldo:begin ?templateMotifSequenceMatchBeginP69848533 .
?templateMotifSequenceMatchBeginP69848533 faldo:position ?templateMotifSequenceMatchBeginPositionP69848528 ;
faldo:reference isoform:P69848-1 .
?templateMotifSequenceProfileAlignmentOperationP69848534 edam:has_input signature:MF_01225_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch535 faldo:location ?targetMotifMatchRegionMatch536 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01225_B538 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP69848MF_01225_B529 .
?targetMotifMatchRegionMatch536 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01225_B537 .
?targetMotifMatchRegionMatchBeginMF_01225_B537 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01225_B530 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01225_B538 edam:has_input signature:MF_01225_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69848MF_01225_B527, 1, (STRLEN(?templateMotifCigarP69848MF_01225_B527) - STRLEN(REPLACE(?templateMotifCigarP69848MF_01225_B527, CONCAT('^(?:-*[^-]){', STR(((264 - ?templateMotifSequenceMatchBeginPositionP69848528) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1539) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69848MF_01225_B529, 1, (STRLEN(?targetMotifMatchCigarP69848MF_01225_B529) - STRLEN(REPLACE(?targetMotifMatchCigarP69848MF_01225_B529, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1539), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69848MF_01225_B529, 1, (STRLEN(?targetMotifMatchCigarP69848MF_01225_B529) - STRLEN(REPLACE(?targetMotifMatchCigarP69848MF_01225_B529, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1539), '}'), '')))), '[^-]', ''))) AS ?step2540) .
BIND(((?step2540 + ?targetMotifMatchRegionMatchBeginPositionMF_01225_B530) - 1) AS ?thisPositionOn158) .
BIND(?thisPositionOn158 AS ?thisPositionOn159) .
BIND(?this AS ?pfs2t541) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn158))) AS ?pfsb155) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn159))) AS ?pfse156) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn158, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_01225a154')) AS ?annotation154) .
BIND(?this AS ?pfs153) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch546 faldo:location ?templateMotifSequenceMatchRegionP69848547 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP69848549 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP69848MF_01225_B542 .
?templateMotifSequenceMatchRegionP69848547 faldo:begin ?templateMotifSequenceMatchBeginP69848548 .
?templateMotifSequenceMatchBeginP69848548 faldo:position ?templateMotifSequenceMatchBeginPositionP69848543 ;
faldo:reference isoform:P69848-1 .
?templateMotifSequenceProfileAlignmentOperationP69848549 edam:has_input signature:MF_01225_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch550 faldo:location ?targetMotifMatchRegionMatch551 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01225_B553 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP69848MF_01225_B544 .
?targetMotifMatchRegionMatch551 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01225_B552 .
?targetMotifMatchRegionMatchBeginMF_01225_B552 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01225_B545 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01225_B553 edam:has_input signature:MF_01225_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69848MF_01225_B542, 1, (STRLEN(?templateMotifCigarP69848MF_01225_B542) - STRLEN(REPLACE(?templateMotifCigarP69848MF_01225_B542, CONCAT('^(?:-*[^-]){', STR(((278 - ?templateMotifSequenceMatchBeginPositionP69848543) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1554) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69848MF_01225_B544, 1, (STRLEN(?targetMotifMatchCigarP69848MF_01225_B544) - STRLEN(REPLACE(?targetMotifMatchCigarP69848MF_01225_B544, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1554), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69848MF_01225_B544, 1, (STRLEN(?targetMotifMatchCigarP69848MF_01225_B544) - STRLEN(REPLACE(?targetMotifMatchCigarP69848MF_01225_B544, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1554), '}'), '')))), '[^-]', ''))) AS ?step2555) .
BIND(((?step2555 + ?targetMotifMatchRegionMatchBeginPositionMF_01225_B545) - 1) AS ?thisPositionOn165) .
BIND(?thisPositionOn165 AS ?thisPositionOn166) .
BIND(?this AS ?pfs2t556) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn165))) AS ?pfsb162) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn166))) AS ?pfse163) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn165, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_01225a161')) AS ?annotation161) .
BIND(?this AS ?pfs160) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch561 faldo:location ?templateMotifSequenceMatchRegionP69848562 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP69848564 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP69848MF_01225_B557 .
?templateMotifSequenceMatchRegionP69848562 faldo:begin ?templateMotifSequenceMatchBeginP69848563 .
?templateMotifSequenceMatchBeginP69848563 faldo:position ?templateMotifSequenceMatchBeginPositionP69848558 ;
faldo:reference isoform:P69848-1 .
?templateMotifSequenceProfileAlignmentOperationP69848564 edam:has_input signature:MF_01225_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch565 faldo:location ?targetMotifMatchRegionMatch566 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01225_B568 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP69848MF_01225_B559 .
?targetMotifMatchRegionMatch566 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01225_B567 .
?targetMotifMatchRegionMatchBeginMF_01225_B567 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01225_B560 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01225_B568 edam:has_input signature:MF_01225_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69848MF_01225_B557, 1, (STRLEN(?templateMotifCigarP69848MF_01225_B557) - STRLEN(REPLACE(?templateMotifCigarP69848MF_01225_B557, CONCAT('^(?:-*[^-]){', STR(((17 - ?templateMotifSequenceMatchBeginPositionP69848558) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1569) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69848MF_01225_B559, 1, (STRLEN(?targetMotifMatchCigarP69848MF_01225_B559) - STRLEN(REPLACE(?targetMotifMatchCigarP69848MF_01225_B559, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1569), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69848MF_01225_B559, 1, (STRLEN(?targetMotifMatchCigarP69848MF_01225_B559) - STRLEN(REPLACE(?targetMotifMatchCigarP69848MF_01225_B559, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1569), '}'), '')))), '[^-]', ''))) AS ?step2570) .
BIND(((?step2570 + ?targetMotifMatchRegionMatchBeginPositionMF_01225_B560) - 1) AS ?thisPositionOn172) .
BIND(?thisPositionOn172 AS ?thisPositionOn173) .
BIND(?this AS ?pfs2t571) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn172))) AS ?pfsb169) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn173))) AS ?pfse170) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn172, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01225a168')) AS ?annotation168) .
BIND(?this AS ?pfs167) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch576 faldo:location ?templateMotifSequenceMatchRegionP69848577 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP69848579 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP69848MF_01225_B572 .
?templateMotifSequenceMatchRegionP69848577 faldo:begin ?templateMotifSequenceMatchBeginP69848578 .
?templateMotifSequenceMatchBeginP69848578 faldo:position ?templateMotifSequenceMatchBeginPositionP69848573 ;
faldo:reference isoform:P69848-1 .
?templateMotifSequenceProfileAlignmentOperationP69848579 edam:has_input signature:MF_01225_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch580 faldo:location ?targetMotifMatchRegionMatch581 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01225_B583 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP69848MF_01225_B574 .
?targetMotifMatchRegionMatch581 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01225_B582 .
?targetMotifMatchRegionMatchBeginMF_01225_B582 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01225_B575 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01225_B583 edam:has_input signature:MF_01225_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69848MF_01225_B572, 1, (STRLEN(?templateMotifCigarP69848MF_01225_B572) - STRLEN(REPLACE(?templateMotifCigarP69848MF_01225_B572, CONCAT('^(?:-*[^-]){', STR(((30 - ?templateMotifSequenceMatchBeginPositionP69848573) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1584) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69848MF_01225_B574, 1, (STRLEN(?targetMotifMatchCigarP69848MF_01225_B574) - STRLEN(REPLACE(?targetMotifMatchCigarP69848MF_01225_B574, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1584), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69848MF_01225_B574, 1, (STRLEN(?targetMotifMatchCigarP69848MF_01225_B574) - STRLEN(REPLACE(?targetMotifMatchCigarP69848MF_01225_B574, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1584), '}'), '')))), '[^-]', ''))) AS ?step2585) .
BIND(((?step2585 + ?targetMotifMatchRegionMatchBeginPositionMF_01225_B575) - 1) AS ?thisPositionOn179) .
BIND(?thisPositionOn179 AS ?thisPositionOn180) .
BIND(?this AS ?pfs2t586) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn179))) AS ?pfsb176) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn180))) AS ?pfse177) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn179, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_01225a175')) AS ?annotation175) .
BIND(?this AS ?pfs174) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch591 faldo:location ?templateMotifSequenceMatchRegionP69848592 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP69848594 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP69848MF_01225_B587 .
?templateMotifSequenceMatchRegionP69848592 faldo:begin ?templateMotifSequenceMatchBeginP69848593 .
?templateMotifSequenceMatchBeginP69848593 faldo:position ?templateMotifSequenceMatchBeginPositionP69848588 ;
faldo:reference isoform:P69848-1 .
?templateMotifSequenceProfileAlignmentOperationP69848594 edam:has_input signature:MF_01225_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch595 faldo:location ?targetMotifMatchRegionMatch596 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01225_B598 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP69848MF_01225_B589 .
?targetMotifMatchRegionMatch596 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01225_B597 .
?targetMotifMatchRegionMatchBeginMF_01225_B597 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01225_B590 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01225_B598 edam:has_input signature:MF_01225_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69848MF_01225_B587, 1, (STRLEN(?templateMotifCigarP69848MF_01225_B587) - STRLEN(REPLACE(?templateMotifCigarP69848MF_01225_B587, CONCAT('^(?:-*[^-]){', STR(((71 - ?templateMotifSequenceMatchBeginPositionP69848588) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1599) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69848MF_01225_B589, 1, (STRLEN(?targetMotifMatchCigarP69848MF_01225_B589) - STRLEN(REPLACE(?targetMotifMatchCigarP69848MF_01225_B589, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1599), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69848MF_01225_B589, 1, (STRLEN(?targetMotifMatchCigarP69848MF_01225_B589) - STRLEN(REPLACE(?targetMotifMatchCigarP69848MF_01225_B589, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1599), '}'), '')))), '[^-]', ''))) AS ?step2600) .
BIND(((?step2600 + ?targetMotifMatchRegionMatchBeginPositionMF_01225_B590) - 1) AS ?thisPositionOn186) .
BIND(?thisPositionOn186 AS ?thisPositionOn187) .
BIND(?this AS ?pfs2t601) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn186))) AS ?pfsb183) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn187))) AS ?pfse184) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn186, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01225a182')) AS ?annotation182) .
BIND(?this AS ?pfs181) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch606 faldo:location ?templateMotifSequenceMatchRegionP69848607 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP69848609 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP69848MF_01225_B602 .
?templateMotifSequenceMatchRegionP69848607 faldo:begin ?templateMotifSequenceMatchBeginP69848608 .
?templateMotifSequenceMatchBeginP69848608 faldo:position ?templateMotifSequenceMatchBeginPositionP69848603 ;
faldo:reference isoform:P69848-1 .
?templateMotifSequenceProfileAlignmentOperationP69848609 edam:has_input signature:MF_01225_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch610 faldo:location ?targetMotifMatchRegionMatch611 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01225_B613 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP69848MF_01225_B604 .
?targetMotifMatchRegionMatch611 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01225_B612 .
?targetMotifMatchRegionMatchBeginMF_01225_B612 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01225_B605 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01225_B613 edam:has_input signature:MF_01225_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69848MF_01225_B602, 1, (STRLEN(?templateMotifCigarP69848MF_01225_B602) - STRLEN(REPLACE(?templateMotifCigarP69848MF_01225_B602, CONCAT('^(?:-*[^-]){', STR(((75 - ?templateMotifSequenceMatchBeginPositionP69848603) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1614) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69848MF_01225_B604, 1, (STRLEN(?targetMotifMatchCigarP69848MF_01225_B604) - STRLEN(REPLACE(?targetMotifMatchCigarP69848MF_01225_B604, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1614), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69848MF_01225_B604, 1, (STRLEN(?targetMotifMatchCigarP69848MF_01225_B604) - STRLEN(REPLACE(?targetMotifMatchCigarP69848MF_01225_B604, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1614), '}'), '')))), '[^-]', ''))) AS ?step2615) .
BIND(((?step2615 + ?targetMotifMatchRegionMatchBeginPositionMF_01225_B605) - 1) AS ?thisPositionOn193) .
BIND(?thisPositionOn193 AS ?thisPositionOn194) .
BIND(?this AS ?pfs2t616) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn193))) AS ?pfsb190) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn194))) AS ?pfse191) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn193, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_01225a189')) AS ?annotation189) .
BIND(?this AS ?pfs188) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch621 faldo:location ?templateMotifSequenceMatchRegionP69848622 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP69848624 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP69848MF_01225_B617 .
?templateMotifSequenceMatchRegionP69848622 faldo:begin ?templateMotifSequenceMatchBeginP69848623 .
?templateMotifSequenceMatchBeginP69848623 faldo:position ?templateMotifSequenceMatchBeginPositionP69848618 ;
faldo:reference isoform:P69848-1 .
?templateMotifSequenceProfileAlignmentOperationP69848624 edam:has_input signature:MF_01225_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch625 faldo:location ?targetMotifMatchRegionMatch626 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01225_B628 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP69848MF_01225_B619 .
?targetMotifMatchRegionMatch626 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01225_B627 .
?targetMotifMatchRegionMatchBeginMF_01225_B627 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01225_B620 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01225_B628 edam:has_input signature:MF_01225_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69848MF_01225_B617, 1, (STRLEN(?templateMotifCigarP69848MF_01225_B617) - STRLEN(REPLACE(?templateMotifCigarP69848MF_01225_B617, CONCAT('^(?:-*[^-]){', STR(((102 - ?templateMotifSequenceMatchBeginPositionP69848618) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1629) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69848MF_01225_B619, 1, (STRLEN(?targetMotifMatchCigarP69848MF_01225_B619) - STRLEN(REPLACE(?targetMotifMatchCigarP69848MF_01225_B619, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1629), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69848MF_01225_B619, 1, (STRLEN(?targetMotifMatchCigarP69848MF_01225_B619) - STRLEN(REPLACE(?targetMotifMatchCigarP69848MF_01225_B619, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1629), '}'), '')))), '[^-]', ''))) AS ?step2630) .
BIND(((?step2630 + ?targetMotifMatchRegionMatchBeginPositionMF_01225_B620) - 1) AS ?thisPositionOn200) .
BIND(?thisPositionOn200 AS ?thisPositionOn201) .
BIND(?this AS ?pfs2t631) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn200))) AS ?pfsb197) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn201))) AS ?pfse198) .
FILTER (REGEX('[TS]', SUBSTR(?thisSequenceValue, ?thisPositionOn200, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01225a196')) AS ?annotation196) .
BIND(?this AS ?pfs195) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch636 faldo:location ?templateMotifSequenceMatchRegionP69848637 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP69848639 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP69848MF_01225_B632 .
?templateMotifSequenceMatchRegionP69848637 faldo:begin ?templateMotifSequenceMatchBeginP69848638 .
?templateMotifSequenceMatchBeginP69848638 faldo:position ?templateMotifSequenceMatchBeginPositionP69848633 ;
faldo:reference isoform:P69848-1 .
?templateMotifSequenceProfileAlignmentOperationP69848639 edam:has_input signature:MF_01225_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch640 faldo:location ?targetMotifMatchRegionMatch641 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01225_B643 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP69848MF_01225_B634 .
?targetMotifMatchRegionMatch641 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01225_B642 .
?targetMotifMatchRegionMatchBeginMF_01225_B642 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01225_B635 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01225_B643 edam:has_input signature:MF_01225_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69848MF_01225_B632, 1, (STRLEN(?templateMotifCigarP69848MF_01225_B632) - STRLEN(REPLACE(?templateMotifCigarP69848MF_01225_B632, CONCAT('^(?:-*[^-]){', STR(((126 - ?templateMotifSequenceMatchBeginPositionP69848633) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1644) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69848MF_01225_B634, 1, (STRLEN(?targetMotifMatchCigarP69848MF_01225_B634) - STRLEN(REPLACE(?targetMotifMatchCigarP69848MF_01225_B634, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1644), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69848MF_01225_B634, 1, (STRLEN(?targetMotifMatchCigarP69848MF_01225_B634) - STRLEN(REPLACE(?targetMotifMatchCigarP69848MF_01225_B634, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1644), '}'), '')))), '[^-]', ''))) AS ?step2645) .
BIND(((?step2645 + ?targetMotifMatchRegionMatchBeginPositionMF_01225_B635) - 1) AS ?thisPositionOn207) .
BIND(?thisPositionOn207 AS ?thisPositionOn208) .
BIND(?this AS ?pfs2t646) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn207))) AS ?pfsb204) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn208))) AS ?pfse205) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn207, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_01225a203')) AS ?annotation203) .
BIND(?this AS ?pfs202) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch651 faldo:location ?templateMotifSequenceMatchRegionP69848652 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP69848654 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP69848MF_01225_B647 .
?templateMotifSequenceMatchRegionP69848652 faldo:begin ?templateMotifSequenceMatchBeginP69848653 .
?templateMotifSequenceMatchBeginP69848653 faldo:position ?templateMotifSequenceMatchBeginPositionP69848648 ;
faldo:reference isoform:P69848-1 .
?templateMotifSequenceProfileAlignmentOperationP69848654 edam:has_input signature:MF_01225_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch655 faldo:location ?targetMotifMatchRegionMatch656 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01225_B658 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP69848MF_01225_B649 .
?targetMotifMatchRegionMatch656 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01225_B657 .
?targetMotifMatchRegionMatchBeginMF_01225_B657 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01225_B650 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01225_B658 edam:has_input signature:MF_01225_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69848MF_01225_B647, 1, (STRLEN(?templateMotifCigarP69848MF_01225_B647) - STRLEN(REPLACE(?templateMotifCigarP69848MF_01225_B647, CONCAT('^(?:-*[^-]){', STR(((163 - ?templateMotifSequenceMatchBeginPositionP69848648) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1659) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69848MF_01225_B649, 1, (STRLEN(?targetMotifMatchCigarP69848MF_01225_B649) - STRLEN(REPLACE(?targetMotifMatchCigarP69848MF_01225_B649, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1659), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69848MF_01225_B649, 1, (STRLEN(?targetMotifMatchCigarP69848MF_01225_B649) - STRLEN(REPLACE(?targetMotifMatchCigarP69848MF_01225_B649, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1659), '}'), '')))), '[^-]', ''))) AS ?step2660) .
BIND(((?step2660 + ?targetMotifMatchRegionMatchBeginPositionMF_01225_B650) - 1) AS ?thisPositionOn214) .
BIND(?thisPositionOn214 AS ?thisPositionOn215) .
BIND(?this AS ?pfs2t661) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn214))) AS ?pfsb211) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn215))) AS ?pfse212) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn214, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01225a210')) AS ?annotation210) .
BIND(?this AS ?pfs209) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch666 faldo:location ?templateMotifSequenceMatchRegionP69848667 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP69848669 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP69848MF_01225_B662 .
?templateMotifSequenceMatchRegionP69848667 faldo:begin ?templateMotifSequenceMatchBeginP69848668 .
?templateMotifSequenceMatchBeginP69848668 faldo:position ?templateMotifSequenceMatchBeginPositionP69848663 ;
faldo:reference isoform:P69848-1 .
?templateMotifSequenceProfileAlignmentOperationP69848669 edam:has_input signature:MF_01225_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch670 faldo:location ?targetMotifMatchRegionMatch671 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01225_B673 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP69848MF_01225_B664 .
?targetMotifMatchRegionMatch671 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01225_B672 .
?targetMotifMatchRegionMatchBeginMF_01225_B672 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01225_B665 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01225_B673 edam:has_input signature:MF_01225_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69848MF_01225_B662, 1, (STRLEN(?templateMotifCigarP69848MF_01225_B662) - STRLEN(REPLACE(?templateMotifCigarP69848MF_01225_B662, CONCAT('^(?:-*[^-]){', STR(((197 - ?templateMotifSequenceMatchBeginPositionP69848663) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1674) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69848MF_01225_B664, 1, (STRLEN(?targetMotifMatchCigarP69848MF_01225_B664) - STRLEN(REPLACE(?targetMotifMatchCigarP69848MF_01225_B664, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1674), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69848MF_01225_B664, 1, (STRLEN(?targetMotifMatchCigarP69848MF_01225_B664) - STRLEN(REPLACE(?targetMotifMatchCigarP69848MF_01225_B664, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1674), '}'), '')))), '[^-]', ''))) AS ?step2675) .
BIND(((?step2675 + ?targetMotifMatchRegionMatchBeginPositionMF_01225_B665) - 1) AS ?thisPositionOn221) .
BIND(?thisPositionOn221 AS ?thisPositionOn222) .
BIND(?this AS ?pfs2t676) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn221))) AS ?pfsb218) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn222))) AS ?pfse219) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn221, 1) = 'M')) .
BIND(URI(CONCAT(STR(?this), '#MF_01225a217')) AS ?annotation217) .
BIND(?this AS ?pfs216) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(?this AS ?case7) .
BIND(URI(CONCAT(STR(?this), '#MF_01225a8')) AS ?name8) .
BIND(URI(CONCAT(STR(?this), '#MF_01225a9')) AS ?name9) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(?this AS ?case10) .
BIND(URI(CONCAT(STR(?this), '#MF_01225a11')) AS ?name11) .
BIND(URI(CONCAT(STR(?this), '#MF_01225a12')) AS ?name12) .
}
}
"xsd:string |
