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| Subject | Predicate | Object |
|---|---|---|
| http://purl.uniprot.org/unirules/MF_00028#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00028#construct-template-43 |
| http://purl.uniprot.org/unirules/MF_00028#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00028#construct-template-22 |
| http://purl.uniprot.org/unirules/MF_00028#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00028#construct-template-41 |
| http://purl.uniprot.org/unirules/MF_00028#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00028#construct-template-48 |
| http://purl.uniprot.org/unirules/MF_00028#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00028#construct-template-46 |
| http://purl.uniprot.org/unirules/MF_00028#construct | http://www.w3.org/ns/shacl#prefixes | http://purl.uniprot.org/unirules/ |
| http://purl.uniprot.org/unirules/MF_00028#construct | http://spinrdf.org/sp#where | http://purl.uniprot.org/unirules/MF_00028#construct-where-list-0 |
| http://purl.uniprot.org/unirules/MF_00028#construct | http://spinrdf.org/sp#templates | http://purl.uniprot.org/unirules/MF_00028#construct-template-list-0 |
| http://purl.uniprot.org/unirules/MF_00028#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT { _:11639 up:source unirule:MF_00028 . _:11640 up:source unirule:MF_00028 . _:11641 up:source unirule:MF_00028 . _:11642 up:source unirule:MF_00028 . _:11643 up:source unirule:MF_00028 . _:11644 up:source unirule:MF_00028 . _:11645 up:source unirule:MF_00028 . _:11646 up:source unirule:MF_00028 . _:11647 up:source unirule:MF_00028 . _:11648 up:source unirule:MF_00028 . ?this up:annotation ?annotation1 , ?annotation2 , ?annotation3 ; up:classifiedWith GO:0009236 , GO:0015420 , keyword:169 , keyword:315 . ?gene0 skos:prefLabel 'cobQ' . ?annotation1 a up:Function_Annotation ; rdfs:comment 'Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation.' . ?annotation2 a up:Pathway_Annotation ; rdfs:comment 'Cofactor biosynthesis; adenosylcobalamin biosynthesis.' . ?annotation3 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the CobB/CobQ family. CobQ subfamily.' . ?pfs6 up:annotation ?annotation7 . ?annotation7 faldo:begin ?pfsb8 ; faldo:end ?pfse9 ; rdf:type up:Active_Site_Annotation ; rdfs:comment 'Nucleophile' . ?pfsb8 faldo:position ?thisPositionOn10 ; rdf:type faldo:ExactPosition . ?pfse9 faldo:position ?thisPositionOn11 ; rdf:type faldo:ExactPosition . ?pfs12 up:annotation ?annotation13 . ?annotation13 faldo:begin ?pfsb14 ; faldo:end ?pfse15 ; rdf:type up:Active_Site_Annotation . ?pfsb14 faldo:position ?thisPositionOn16 ; rdf:type faldo:ExactPosition . ?pfse15 faldo:position ?thisPositionOn17 ; rdf:type faldo:ExactPosition . _:11649 a rdf:Statement ; up:attribution _:11639 ; rdf:subject ?gene0 ; rdf:predicate up:encodedBy ; rdf:object ?gene0 . _:11650 a rdf:Statement ; up:attribution _:11640 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation1 . _:11651 a rdf:Statement ; up:attribution _:11641 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation2 . _:11652 a rdf:Statement ; up:attribution _:11642 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:11653 a rdf:Statement ; up:attribution _:11643 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:169 . _:11654 a rdf:Statement ; up:attribution _:11644 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:315 . _:11655 a rdf:Statement ; up:attribution _:11645 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0015420 . _:11656 a rdf:Statement ; up:attribution _:11646 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0009236 . _:11657 a rdf:Statement ; up:source unirule:MF_00028 ; rdf:subject ?pfs6 ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:11658 a rdf:Statement ; up:attribution _:11647 ; rdf:subject ?pfs6 ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:11659 a rdf:Statement ; up:source unirule:MF_00028 ; rdf:subject ?pfs12 ; rdf:predicate up:annotation ; rdf:object ?annotation13 . _:11660 a rdf:Statement ; up:attribution _:11648 ; rdf:subject ?pfs12 ; rdf:predicate up:annotation ; rdf:object ?annotation13 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_00028 #Rule MF_00028 Created by:? on:2005-02-28 Modified by:Catherine Rivoire on:2024-03-01 VALUES ?supertaxon18 {taxon:2 taxon:2157} ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00028 . ?thisOrganism rdfs:subClassOf+ ?supertaxon18 . BIND(URI(CONCAT(STR(?this), '#MF_00028a1')) AS ?annotation1) . BIND(URI(CONCAT(STR(?this), '#MF_00028a2')) AS ?annotation2) . BIND(URI(CONCAT(STR(?this), '#MF_00028a3')) AS ?annotation3) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch23 faldo:location ?templateMotifSequenceMatchRegionP2993224 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP2993226 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP29932MF_0002819 . ?templateMotifSequenceMatchRegionP2993224 faldo:begin ?templateMotifSequenceMatchBeginP2993225 . ?templateMotifSequenceMatchBeginP2993225 faldo:position ?templateMotifSequenceMatchBeginPositionP2993220 ; faldo:reference isoform:P29932-1 . ?templateMotifSequenceProfileAlignmentOperationP2993226 edam:has_input signature:MF_00028 ; rdf:type edam:operation_0300 . ?targetMotifMatch27 faldo:location ?targetMotifMatchRegionMatch28 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0002830 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP29932MF_0002821 . ?targetMotifMatchRegionMatch28 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0002829 . ?targetMotifMatchRegionMatchBeginMF_0002829 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0002822 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0002830 edam:has_input signature:MF_00028 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP29932MF_0002819, 1, (STRLEN(?templateMotifCigarP29932MF_0002819) - STRLEN(REPLACE(?templateMotifCigarP29932MF_0002819, CONCAT('^(?:-*[^-]){', STR(((333 - ?templateMotifSequenceMatchBeginPositionP2993220) + 1)), '}'), '')))), '[a-z]', '')) AS ?step131) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP29932MF_0002821, 1, (STRLEN(?targetMotifMatchCigarP29932MF_0002821) - STRLEN(REPLACE(?targetMotifMatchCigarP29932MF_0002821, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step131), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP29932MF_0002821, 1, (STRLEN(?targetMotifMatchCigarP29932MF_0002821) - STRLEN(REPLACE(?targetMotifMatchCigarP29932MF_0002821, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step131), '}'), '')))), '[^-]', ''))) AS ?step232) . BIND(((?step232 + ?targetMotifMatchRegionMatchBeginPositionMF_0002822) - 1) AS ?thisPositionOn10) . BIND(?thisPositionOn10 AS ?thisPositionOn11) . BIND(?this AS ?pfs1t33) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn10))) AS ?pfsb8) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn11))) AS ?pfse9) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn10, 1) = 'C')) . BIND(URI(CONCAT(STR(?this), '#MF_00028a7')) AS ?annotation7) . BIND(?this AS ?pfs6) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch38 faldo:location ?templateMotifSequenceMatchRegionP2993239 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP2993241 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP29932MF_0002834 . ?templateMotifSequenceMatchRegionP2993239 faldo:begin ?templateMotifSequenceMatchBeginP2993240 . ?templateMotifSequenceMatchBeginP2993240 faldo:position ?templateMotifSequenceMatchBeginPositionP2993235 ; faldo:reference isoform:P29932-1 . ?templateMotifSequenceProfileAlignmentOperationP2993241 edam:has_input signature:MF_00028 ; rdf:type edam:operation_0300 . ?targetMotifMatch42 faldo:location ?targetMotifMatchRegionMatch43 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0002845 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP29932MF_0002836 . ?targetMotifMatchRegionMatch43 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0002844 . ?targetMotifMatchRegionMatchBeginMF_0002844 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0002837 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0002845 edam:has_input signature:MF_00028 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP29932MF_0002834, 1, (STRLEN(?templateMotifCigarP29932MF_0002834) - STRLEN(REPLACE(?templateMotifCigarP29932MF_0002834, CONCAT('^(?:-*[^-]){', STR(((430 - ?templateMotifSequenceMatchBeginPositionP2993235) + 1)), '}'), '')))), '[a-z]', '')) AS ?step146) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP29932MF_0002836, 1, (STRLEN(?targetMotifMatchCigarP29932MF_0002836) - STRLEN(REPLACE(?targetMotifMatchCigarP29932MF_0002836, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step146), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP29932MF_0002836, 1, (STRLEN(?targetMotifMatchCigarP29932MF_0002836) - STRLEN(REPLACE(?targetMotifMatchCigarP29932MF_0002836, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step146), '}'), '')))), '[^-]', ''))) AS ?step247) . BIND(((?step247 + ?targetMotifMatchRegionMatchBeginPositionMF_0002837) - 1) AS ?thisPositionOn16) . BIND(?thisPositionOn16 AS ?thisPositionOn17) . BIND(?this AS ?pfs1t48) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb14) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse15) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn16, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_00028a13')) AS ?annotation13) . BIND(?this AS ?pfs12) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2157 . BIND(?this AS ?case4) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(?this AS ?case5) . } } "xsd:string |
| http://purl.uniprot.org/unirules/MF_00028 | http://www.w3.org/ns/shacl#rule | http://purl.uniprot.org/unirules/MF_00028#construct |