| http://purl.uniprot.org/unirules/MF_00040#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00040#construct-template-40 |
| http://purl.uniprot.org/unirules/MF_00040#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00040#construct-template-44 |
| http://purl.uniprot.org/unirules/MF_00040#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00040#construct-template-43 |
| http://purl.uniprot.org/unirules/MF_00040#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00040#construct-template-42 |
| http://purl.uniprot.org/unirules/MF_00040#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00040#construct-template-46 |
| http://purl.uniprot.org/unirules/MF_00040#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00040#construct-template-45 |
| http://purl.uniprot.org/unirules/MF_00040#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00040#construct-template-48 |
| http://purl.uniprot.org/unirules/MF_00040#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00040#construct-template-47 |
| http://purl.uniprot.org/unirules/MF_00040#construct | http://www.w3.org/ns/shacl#prefixes | http://purl.uniprot.org/unirules/ |
| http://purl.uniprot.org/unirules/MF_00040#construct | http://spinrdf.org/sp#where | http://purl.uniprot.org/unirules/MF_00040#construct-where-list-0 |
| http://purl.uniprot.org/unirules/MF_00040#construct | http://spinrdf.org/sp#templates | http://purl.uniprot.org/unirules/MF_00040#construct-template-list-0 |
| http://purl.uniprot.org/unirules/MF_00040#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:16188 up:source unirule:MF_00040 .
_:16189 up:source unirule:MF_00040 .
_:16190 up:source unirule:MF_00040 .
_:16191 up:source unirule:MF_00040 .
_:16192 up:source unirule:MF_00040 .
_:16193 up:source unirule:MF_00040 .
_:16194 up:source unirule:MF_00040 .
_:16195 up:source unirule:MF_00040 .
_:16196 up:source unirule:MF_00040 .
_:16197 up:source unirule:MF_00040 .
_:16198 up:source unirule:MF_00040 .
_:16199 up:source unirule:MF_00040 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ;
up:classifiedWith GO:0005737 ,
GO:0006415 ,
keyword:648 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:fullName 'Ribosome-recycling factor' ;
up:shortName 'RRF' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Ribosome-releasing factor' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'frr' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another.' .
?annotation4 a up:Subcellular_Location_Annotation .
?annotation4li5 up:cellularComponent .
?annotation6 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the RRF family.' .
?case7 up:classifiedWith keyword:7 .
?pfs8 up:annotation ?annotation9 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'N6-acetyllysine' .
?pfsb10 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
_:16200 a rdf:Statement ;
up:attribution _:16188 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:16201 a rdf:Statement ;
up:attribution _:16189 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:16202 a rdf:Statement ;
up:attribution _:16190 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:16203 a rdf:Statement ;
up:attribution _:16191 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:16204 a rdf:Statement ;
up:attribution _:16192 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:16205 a rdf:Statement ;
up:attribution _:16193 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:16206 a rdf:Statement ;
up:attribution _:16194 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:16207 a rdf:Statement ;
up:attribution _:16195 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:648 .
_:16208 a rdf:Statement ;
up:attribution _:16196 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006415 .
_:16209 a rdf:Statement ;
up:attribution _:16197 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:16210 a rdf:Statement ;
up:attribution _:16198 ;
rdf:subject ?case7 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:7 .
_:16211 a rdf:Statement ;
up:source unirule:MF_00040 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:16212 a rdf:Statement ;
up:attribution _:16199 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00040
#Rule MF_00040 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2023-06-01
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00040 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_00040a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00040a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00040a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00040a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00040a6')) AS ?annotation6) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch19 faldo:location ?templateMotifSequenceMatchRegionP0A80520 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A80522 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A805MF_0004015 .
?templateMotifSequenceMatchRegionP0A80520 faldo:begin ?templateMotifSequenceMatchBeginP0A80521 .
?templateMotifSequenceMatchBeginP0A80521 faldo:position ?templateMotifSequenceMatchBeginPositionP0A80516 ;
faldo:reference isoform:P0A805-1 .
?templateMotifSequenceProfileAlignmentOperationP0A80522 edam:has_input signature:MF_00040 ;
rdf:type edam:operation_0300 .
?targetMotifMatch23 faldo:location ?targetMotifMatchRegionMatch24 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0004026 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A805MF_0004017 .
?targetMotifMatchRegionMatch24 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0004025 .
?targetMotifMatchRegionMatchBeginMF_0004025 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0004018 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0004026 edam:has_input signature:MF_00040 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFT_1) .
VALUES ?supertaxon14 {taxon:620 taxon:561}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon14 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A805MF_0004015, 1, (STRLEN(?templateMotifCigarP0A805MF_0004015) - STRLEN(REPLACE(?templateMotifCigarP0A805MF_0004015, CONCAT('^(?:-*[^-]){', STR(((162 - ?templateMotifSequenceMatchBeginPositionP0A80516) + 1)), '}'), '')))), '[a-z]', '')) AS ?step127) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A805MF_0004017, 1, (STRLEN(?targetMotifMatchCigarP0A805MF_0004017) - STRLEN(REPLACE(?targetMotifMatchCigarP0A805MF_0004017, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step127), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A805MF_0004017, 1, (STRLEN(?targetMotifMatchCigarP0A805MF_0004017) - STRLEN(REPLACE(?targetMotifMatchCigarP0A805MF_0004017, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step127), '}'), '')))), '[^-]', ''))) AS ?step228) .
BIND(((?step228 + ?targetMotifMatchRegionMatchBeginPositionMF_0004018) - 1) AS ?thisPositionOn12) .
BIND(?thisPositionOn12 AS ?thisPositionOn13) .
BIND(?this AS ?pfs1t29) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfse11) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn12, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_00040a9')) AS ?annotation9) .
BIND(?this AS ?pfs8) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag30) .
}
BIND(IF(BOUND(?tagFT_1), ?caseWithTag30, ?UNBOUND_VARIABLE) AS ?case7) .
}
"xsd:string |
| http://purl.uniprot.org/unirules/MF_00040 | http://www.w3.org/ns/shacl#rule | http://purl.uniprot.org/unirules/MF_00040#construct |
