| http://purl.uniprot.org/unirules/MF_00045#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:18266 up:source unirule:MF_00045 .
_:18267 up:source unirule:MF_00045 .
_:18268 up:source unirule:MF_00045 .
_:18269 up:source unirule:MF_00045 .
_:18270 up:source unirule:MF_00045 .
_:18271 up:source unirule:MF_00045 .
_:18272 up:source unirule:MF_00045 .
_:18273 up:source unirule:MF_00045 .
_:18274 up:source unirule:MF_00045 .
_:18275 up:source unirule:MF_00045 .
_:18276 up:source unirule:MF_00045 .
_:18277 up:source unirule:MF_00045 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ;
up:classifiedWith GO:0005737 ,
GO:0016896 ,
keyword:269 ,
keyword:378 ,
keyword:540 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '3.1.-.-' ;
up:fullName 'Oligoribonuclease' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'orn' .
?annotation2 a up:Function_Annotation ;
rdfs:comment "3'-to-5' exoribonuclease specific for small oligoribonucleotides." .
?annotation3 a up:Subcellular_Location_Annotation .
?annotation3li4 up:cellularComponent .
?annotation5 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the oligoribonuclease family.' .
?pfs7 up:annotation ?annotation8 .
?annotation8 faldo:begin ?pfsb9 ;
faldo:end ?pfse10 ;
rdf:type up:Active_Site_Annotation .
?pfsb9 faldo:position ?thisPositionOn11 ;
rdf:type faldo:ExactPosition .
?pfse10 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
_:18278 a rdf:Statement ;
up:attribution _:18266 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:18279 a rdf:Statement ;
up:attribution _:18267 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:18280 a rdf:Statement ;
up:attribution _:18268 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:18281 a rdf:Statement ;
up:attribution _:18269 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:18282 a rdf:Statement ;
up:attribution _:18270 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:18283 a rdf:Statement ;
up:attribution _:18271 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:18284 a rdf:Statement ;
up:attribution _:18272 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:18285 a rdf:Statement ;
up:attribution _:18273 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:269 .
_:18286 a rdf:Statement ;
up:attribution _:18274 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:540 .
_:18287 a rdf:Statement ;
up:attribution _:18275 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016896 .
_:18288 a rdf:Statement ;
up:attribution _:18276 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:18289 a rdf:Statement ;
up:source unirule:MF_00045 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:18290 a rdf:Statement ;
up:attribution _:18277 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00045
#Rule MF_00045 Created by:? on:2005-02-28 Modified by:Catherine Rivoire on:2023-02-07
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00045 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_00045a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00045a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_00045a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00045a5')) AS ?annotation5) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch17 faldo:location ?templateMotifSequenceMatchRegionP0A78418 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A78420 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A784MF_0004513 .
?templateMotifSequenceMatchRegionP0A78418 faldo:begin ?templateMotifSequenceMatchBeginP0A78419 .
?templateMotifSequenceMatchBeginP0A78419 faldo:position ?templateMotifSequenceMatchBeginPositionP0A78414 ;
faldo:reference isoform:P0A784-1 .
?templateMotifSequenceProfileAlignmentOperationP0A78420 edam:has_input signature:MF_00045 ;
rdf:type edam:operation_0300 .
?targetMotifMatch21 faldo:location ?targetMotifMatchRegionMatch22 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0004524 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A784MF_0004515 .
?targetMotifMatchRegionMatch22 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0004523 .
?targetMotifMatchRegionMatchBeginMF_0004523 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0004516 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0004524 edam:has_input signature:MF_00045 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A784MF_0004513, 1, (STRLEN(?templateMotifCigarP0A784MF_0004513) - STRLEN(REPLACE(?templateMotifCigarP0A784MF_0004513, CONCAT('^(?:-*[^-]){', STR(((129 - ?templateMotifSequenceMatchBeginPositionP0A78414) + 1)), '}'), '')))), '[a-z]', '')) AS ?step125) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A784MF_0004515, 1, (STRLEN(?targetMotifMatchCigarP0A784MF_0004515) - STRLEN(REPLACE(?targetMotifMatchCigarP0A784MF_0004515, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step125), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A784MF_0004515, 1, (STRLEN(?targetMotifMatchCigarP0A784MF_0004515) - STRLEN(REPLACE(?targetMotifMatchCigarP0A784MF_0004515, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step125), '}'), '')))), '[^-]', ''))) AS ?step226) .
BIND(((?step226 + ?targetMotifMatchRegionMatchBeginPositionMF_0004516) - 1) AS ?thisPositionOn11) .
BIND(?thisPositionOn11 AS ?thisPositionOn12) .
BIND(?this AS ?pfs1t27) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn11))) AS ?pfsb9) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfse10) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn11, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_00045a8')) AS ?annotation8) .
BIND(?this AS ?pfs7) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:561 .
BIND(?this AS ?case6) .
}
}
"xsd:string |
