| http://purl.uniprot.org/unirules/MF_00078#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00078#construct-template-28 |
| http://purl.uniprot.org/unirules/MF_00078#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00078#construct-template-37 |
| http://purl.uniprot.org/unirules/MF_00078#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00078#construct-template-57 |
| http://purl.uniprot.org/unirules/MF_00078#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00078#construct-template-13 |
| http://purl.uniprot.org/unirules/MF_00078#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00078#construct-template-35 |
| http://purl.uniprot.org/unirules/MF_00078#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00078#construct-template-55 |
| http://purl.uniprot.org/unirules/MF_00078#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00078#construct-template-11 |
| http://purl.uniprot.org/unirules/MF_00078#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00078#construct-template-50 |
| http://purl.uniprot.org/unirules/MF_00078#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00078#construct-template-1 |
| http://purl.uniprot.org/unirules/MF_00078#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00078#construct-template-54 |
| http://purl.uniprot.org/unirules/MF_00078#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00078#construct-template-52 |
| http://purl.uniprot.org/unirules/MF_00078#construct | http://www.w3.org/ns/shacl#prefixes | http://purl.uniprot.org/unirules/ |
| http://purl.uniprot.org/unirules/MF_00078#construct | http://spinrdf.org/sp#where | http://purl.uniprot.org/unirules/MF_00078#construct-where-list-0 |
| http://purl.uniprot.org/unirules/MF_00078#construct | http://spinrdf.org/sp#templates | http://purl.uniprot.org/unirules/MF_00078#construct-template-list-0 |
| http://purl.uniprot.org/unirules/MF_00078#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:30363 up:source unirule:MF_00078 .
_:30364 up:source unirule:MF_00078 .
_:30365 up:source unirule:MF_00078 .
_:30366 up:source unirule:MF_00078 .
_:30367 up:source unirule:MF_00078 .
_:30368 up:source unirule:MF_00078 .
_:30369 up:source unirule:MF_00078 .
_:30370 up:source unirule:MF_00078 .
_:30371 up:source unirule:MF_00078 .
_:30372 up:source unirule:MF_00078 .
_:30373 up:source unirule:MF_00078 .
?this up:annotation ?annotation1 ,
?annotation2 ,
?annotation4 ,
?annotation5 ,
?annotation6 ;
up:classifiedWith GO:0016836 ,
GO:0019287 ,
keyword:414 ,
keyword:456 ;
up:recommendedName ?name0 .
?name0 up:ecName '4.2.1.182' ;
up:fullName 'Phosphomevalonate dehydratase small subunit' ;
up:shortName 'PMDh small subunit' ,
'PMDh-S' ;
rdf:type up:Structured_Name .
?annotation1 a up:Function_Annotation ;
rdfs:comment 'Component of a hydro-lyase that catalyzes the dehydration of mevalonate 5-phosphate (MVA5P) to form trans-anhydromevalonate 5-phosphate (tAHMP). Involved in the archaeal mevalonate (MVA) pathway, which provides fundamental precursors for isoprenoid biosynthesis, such as isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP).' .
?annotation2 up:activity ?activity3 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity3 up:catalyticActivity ;
up:enzymeClass .
?annotation4 a up:Pathway_Annotation ;
rdfs:comment 'Isoprenoid biosynthesis; isopentenyl diphosphate biosynthesis via mevalonate pathway.' .
?annotation5 a up:Subunit_Annotation ;
rdfs:comment 'Heterodimer composed of a large subunit (PMDh-L) and a small subunit (PMDh-S).' .
?annotation6 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the AcnX type II small subunit family.' .
?pfs7 up:annotation ?annotation8 .
?annotation8 faldo:begin ?pfsb9 ;
faldo:end ?pfse10 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb9 faldo:position ?thisPositionOn11 ;
rdf:type faldo:ExactPosition .
?pfse10 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
_:30374 a rdf:Statement ;
up:attribution _:30363 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:30375 a rdf:Statement ;
up:attribution _:30364 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation1 .
_:30376 a rdf:Statement ;
up:attribution _:30365 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:30377 a rdf:Statement ;
up:attribution _:30366 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:30378 a rdf:Statement ;
up:attribution _:30367 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:30379 a rdf:Statement ;
up:attribution _:30368 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:30380 a rdf:Statement ;
up:attribution _:30369 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:414 .
_:30381 a rdf:Statement ;
up:attribution _:30370 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:456 .
_:30382 a rdf:Statement ;
up:attribution _:30371 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016836 .
_:30383 a rdf:Statement ;
up:attribution _:30372 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019287 .
_:30384 a rdf:Statement ;
up:source unirule:MF_00078 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:30385 a rdf:Statement ;
up:attribution _:30373 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00078
#Rule MF_00078 Created by:? on:2005-02-28 Modified by:Catherine Rivoire on:2024-05-22
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00078 .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(URI(CONCAT(STR(?this), '#MF_00078a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00078a1')) AS ?annotation1) .
BIND(URI(CONCAT(STR(?this), '#MF_00078a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_00078a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00078a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00078a6')) AS ?annotation6) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch17 faldo:location ?templateMotifSequenceMatchRegionQ9YA4918 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9YA4920 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9YA49MF_0007813 .
?templateMotifSequenceMatchRegionQ9YA4918 faldo:begin ?templateMotifSequenceMatchBeginQ9YA4919 .
?templateMotifSequenceMatchBeginQ9YA4919 faldo:position ?templateMotifSequenceMatchBeginPositionQ9YA4914 ;
faldo:reference isoform:Q9YA49-1 .
?templateMotifSequenceProfileAlignmentOperationQ9YA4920 edam:has_input signature:MF_00078 ;
rdf:type edam:operation_0300 .
?targetMotifMatch21 faldo:location ?targetMotifMatchRegionMatch22 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0007824 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9YA49MF_0007815 .
?targetMotifMatchRegionMatch22 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0007823 .
?targetMotifMatchRegionMatchBeginMF_0007823 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0007816 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0007824 edam:has_input signature:MF_00078 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9YA49MF_0007813, 1, (STRLEN(?templateMotifCigarQ9YA49MF_0007813) - STRLEN(REPLACE(?templateMotifCigarQ9YA49MF_0007813, CONCAT('^(?:-*[^-]){', STR(((58 - ?templateMotifSequenceMatchBeginPositionQ9YA4914) + 1)), '}'), '')))), '[a-z]', '')) AS ?step125) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9YA49MF_0007815, 1, (STRLEN(?targetMotifMatchCigarQ9YA49MF_0007815) - STRLEN(REPLACE(?targetMotifMatchCigarQ9YA49MF_0007815, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step125), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9YA49MF_0007815, 1, (STRLEN(?targetMotifMatchCigarQ9YA49MF_0007815) - STRLEN(REPLACE(?targetMotifMatchCigarQ9YA49MF_0007815, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step125), '}'), '')))), '[^-]', ''))) AS ?step226) .
BIND(((?step226 + ?targetMotifMatchRegionMatchBeginPositionMF_0007816) - 1) AS ?thisPositionOn11) .
BIND(?thisPositionOn11 AS ?thisPositionOn12) .
BIND(?this AS ?pfs1t27) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn11))) AS ?pfsb9) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfse10) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn11, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_00078a8')) AS ?annotation8) .
BIND(?this AS ?pfs7) .
}
}
"xsd:string |
| http://purl.uniprot.org/unirules/MF_00078 | http://www.w3.org/ns/shacl#rule | http://purl.uniprot.org/unirules/MF_00078#construct |
