| http://purl.uniprot.org/unirules/MF_00093#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00093#construct-template-9 |
| http://purl.uniprot.org/unirules/MF_00093#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00093#construct-template-42 |
| http://purl.uniprot.org/unirules/MF_00093#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00093#construct-template-49 |
| http://purl.uniprot.org/unirules/MF_00093#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00093#construct-template-44 |
| http://purl.uniprot.org/unirules/MF_00093#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00093#construct-template-47 |
| http://purl.uniprot.org/unirules/MF_00093#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00093#construct-template-46 |
| http://purl.uniprot.org/unirules/MF_00093#construct | http://www.w3.org/ns/shacl#prefixes | http://purl.uniprot.org/unirules/ |
| http://purl.uniprot.org/unirules/MF_00093#construct | http://spinrdf.org/sp#where | http://purl.uniprot.org/unirules/MF_00093#construct-where-list-0 |
| http://purl.uniprot.org/unirules/MF_00093#construct | http://spinrdf.org/sp#templates | http://purl.uniprot.org/unirules/MF_00093#construct-template-list-0 |
| http://purl.uniprot.org/unirules/MF_00093#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:36284 up:source unirule:MF_00093 .
_:36285 up:source unirule:MF_00093 .
_:36286 up:source unirule:MF_00093 .
_:36287 up:source unirule:MF_00093 .
_:36288 up:source unirule:MF_00093 .
_:36289 up:source unirule:MF_00093 .
_:36290 up:source unirule:MF_00093 .
_:36291 up:source unirule:MF_00093 .
_:36292 up:source unirule:MF_00093 .
_:36293 up:source unirule:MF_00093 .
_:36294 up:source unirule:MF_00093 .
_:36295 up:source unirule:MF_00093 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ;
up:classifiedWith GO:0005737 ,
GO:0006415 ,
GO:0016149 ,
keyword:648 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:fullName 'Peptide chain release factor 1' ;
up:shortName 'RF-1' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'prfA' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.' .
?annotation3 a up:Subcellular_Location_Annotation .
?annotation3li4 up:cellularComponent .
?annotation5 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the prokaryotic/mitochondrial release factor family.' .
?case6 up:classifiedWith keyword:488 .
?pfs7 up:annotation ?annotation8 .
?annotation8 faldo:begin ?pfsb9 ;
faldo:end ?pfse10 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'N5-methylglutamine' .
?pfsb9 faldo:position ?thisPositionOn11 ;
rdf:type faldo:ExactPosition .
?pfse10 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
_:36296 a rdf:Statement ;
up:attribution _:36284 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:36297 a rdf:Statement ;
up:attribution _:36285 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:36298 a rdf:Statement ;
up:attribution _:36286 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:36299 a rdf:Statement ;
up:attribution _:36287 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:36300 a rdf:Statement ;
up:attribution _:36288 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:36301 a rdf:Statement ;
up:attribution _:36289 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:36302 a rdf:Statement ;
up:attribution _:36290 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:648 .
_:36303 a rdf:Statement ;
up:attribution _:36291 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016149 .
_:36304 a rdf:Statement ;
up:attribution _:36292 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006415 .
_:36305 a rdf:Statement ;
up:attribution _:36293 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:36306 a rdf:Statement ;
up:attribution _:36294 ;
rdf:subject ?case6 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:488 .
_:36307 a rdf:Statement ;
up:source unirule:MF_00093 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:36308 a rdf:Statement ;
up:attribution _:36295 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00093
#Rule MF_00093 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2023-06-01
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00093 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_00093a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00093a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_00093a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00093a5')) AS ?annotation5) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch17 faldo:location ?templateMotifSequenceMatchRegionP0A7I018 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A7I020 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A7I0MF_0009313 .
?templateMotifSequenceMatchRegionP0A7I018 faldo:begin ?templateMotifSequenceMatchBeginP0A7I019 .
?templateMotifSequenceMatchBeginP0A7I019 faldo:position ?templateMotifSequenceMatchBeginPositionP0A7I014 ;
faldo:reference isoform:P0A7I0-1 .
?templateMotifSequenceProfileAlignmentOperationP0A7I020 edam:has_input signature:MF_00093 ;
rdf:type edam:operation_0300 .
?targetMotifMatch21 faldo:location ?targetMotifMatchRegionMatch22 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0009324 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A7I0MF_0009315 .
?targetMotifMatchRegionMatch22 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0009323 .
?targetMotifMatchRegionMatchBeginMF_0009323 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0009316 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0009324 edam:has_input signature:MF_00093 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFT_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A7I0MF_0009313, 1, (STRLEN(?templateMotifCigarP0A7I0MF_0009313) - STRLEN(REPLACE(?templateMotifCigarP0A7I0MF_0009313, CONCAT('^(?:-*[^-]){', STR(((235 - ?templateMotifSequenceMatchBeginPositionP0A7I014) + 1)), '}'), '')))), '[a-z]', '')) AS ?step125) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A7I0MF_0009315, 1, (STRLEN(?targetMotifMatchCigarP0A7I0MF_0009315) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7I0MF_0009315, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step125), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A7I0MF_0009315, 1, (STRLEN(?targetMotifMatchCigarP0A7I0MF_0009315) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7I0MF_0009315, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step125), '}'), '')))), '[^-]', ''))) AS ?step226) .
BIND(((?step226 + ?targetMotifMatchRegionMatchBeginPositionMF_0009316) - 1) AS ?thisPositionOn11) .
BIND(?thisPositionOn11 AS ?thisPositionOn12) .
BIND(?this AS ?pfs1t27) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn11))) AS ?pfsb9) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfse10) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn11, 1) = 'Q')) .
BIND(URI(CONCAT(STR(?this), '#MF_00093a8')) AS ?annotation8) .
BIND(?this AS ?pfs7) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag28) .
}
BIND(IF(BOUND(?tagFT_1), ?caseWithTag28, ?UNBOUND_VARIABLE) AS ?case6) .
}
"xsd:string |
| http://purl.uniprot.org/unirules/MF_00093 | http://www.w3.org/ns/shacl#rule | http://purl.uniprot.org/unirules/MF_00093#construct |
