| http://purl.uniprot.org/unirules/MF_00094#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00094#construct-template-50 |
| http://purl.uniprot.org/unirules/MF_00094#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00094#construct-template-39 |
| http://purl.uniprot.org/unirules/MF_00094#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00094#construct-template-38 |
| http://purl.uniprot.org/unirules/MF_00094#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00094#construct-template-37 |
| http://purl.uniprot.org/unirules/MF_00094#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00094#construct-template-36 |
| http://purl.uniprot.org/unirules/MF_00094#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00094#construct-template-35 |
| http://purl.uniprot.org/unirules/MF_00094#construct | http://www.w3.org/ns/shacl#prefixes | http://purl.uniprot.org/unirules/ |
| http://purl.uniprot.org/unirules/MF_00094#construct | http://spinrdf.org/sp#where | http://purl.uniprot.org/unirules/MF_00094#construct-where-list-0 |
| http://purl.uniprot.org/unirules/MF_00094#construct | http://spinrdf.org/sp#templates | http://purl.uniprot.org/unirules/MF_00094#construct-template-list-0 |
| http://purl.uniprot.org/unirules/MF_00094#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:36514 up:source unirule:MF_00094 .
_:36515 up:source unirule:MF_00094 .
_:36516 up:source unirule:MF_00094 .
_:36517 up:source unirule:MF_00094 .
_:36518 up:source unirule:MF_00094 .
_:36519 up:source unirule:MF_00094 .
_:36520 up:source unirule:MF_00094 .
_:36521 up:source unirule:MF_00094 .
_:36522 up:source unirule:MF_00094 .
_:36523 up:source unirule:MF_00094 .
_:36524 up:source unirule:MF_00094 .
_:36525 up:source unirule:MF_00094 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ;
up:classifiedWith GO:0005737 ,
GO:0006415 ,
GO:0016149 ,
keyword:648 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:fullName 'Peptide chain release factor 2' ;
up:shortName 'RF-2' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'prfB' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.' .
?annotation3 a up:Subcellular_Location_Annotation .
?annotation3li4 up:cellularComponent .
?annotation5 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the prokaryotic/mitochondrial release factor family.' .
?case6 up:classifiedWith keyword:488 .
?pfs7 up:annotation ?annotation8 .
?annotation8 faldo:begin ?pfsb9 ;
faldo:end ?pfse10 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'N5-methylglutamine' .
?pfsb9 faldo:position ?thisPositionOn11 ;
rdf:type faldo:ExactPosition .
?pfse10 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
_:36526 a rdf:Statement ;
up:attribution _:36514 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:36527 a rdf:Statement ;
up:attribution _:36515 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:36528 a rdf:Statement ;
up:attribution _:36516 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:36529 a rdf:Statement ;
up:attribution _:36517 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:36530 a rdf:Statement ;
up:attribution _:36518 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:36531 a rdf:Statement ;
up:attribution _:36519 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:36532 a rdf:Statement ;
up:attribution _:36520 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:648 .
_:36533 a rdf:Statement ;
up:attribution _:36521 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016149 .
_:36534 a rdf:Statement ;
up:attribution _:36522 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006415 .
_:36535 a rdf:Statement ;
up:attribution _:36523 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:36536 a rdf:Statement ;
up:attribution _:36524 ;
rdf:subject ?case6 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:488 .
_:36537 a rdf:Statement ;
up:source unirule:MF_00094 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:36538 a rdf:Statement ;
up:attribution _:36525 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00094
#Rule MF_00094 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2023-06-01
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00094 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_00094a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00094a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_00094a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00094a5')) AS ?annotation5) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch17 faldo:location ?templateMotifSequenceMatchRegionP0701218 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0701220 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP07012MF_0009413 .
?templateMotifSequenceMatchRegionP0701218 faldo:begin ?templateMotifSequenceMatchBeginP0701219 .
?templateMotifSequenceMatchBeginP0701219 faldo:position ?templateMotifSequenceMatchBeginPositionP0701214 ;
faldo:reference isoform:P07012-1 .
?templateMotifSequenceProfileAlignmentOperationP0701220 edam:has_input signature:MF_00094 ;
rdf:type edam:operation_0300 .
?targetMotifMatch21 faldo:location ?targetMotifMatchRegionMatch22 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0009424 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP07012MF_0009415 .
?targetMotifMatchRegionMatch22 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0009423 .
?targetMotifMatchRegionMatchBeginMF_0009423 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0009416 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0009424 edam:has_input signature:MF_00094 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFT_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07012MF_0009413, 1, (STRLEN(?templateMotifCigarP07012MF_0009413) - STRLEN(REPLACE(?templateMotifCigarP07012MF_0009413, CONCAT('^(?:-*[^-]){', STR(((252 - ?templateMotifSequenceMatchBeginPositionP0701214) + 1)), '}'), '')))), '[a-z]', '')) AS ?step125) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07012MF_0009415, 1, (STRLEN(?targetMotifMatchCigarP07012MF_0009415) - STRLEN(REPLACE(?targetMotifMatchCigarP07012MF_0009415, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step125), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07012MF_0009415, 1, (STRLEN(?targetMotifMatchCigarP07012MF_0009415) - STRLEN(REPLACE(?targetMotifMatchCigarP07012MF_0009415, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step125), '}'), '')))), '[^-]', ''))) AS ?step226) .
BIND(((?step226 + ?targetMotifMatchRegionMatchBeginPositionMF_0009416) - 1) AS ?thisPositionOn11) .
BIND(?thisPositionOn11 AS ?thisPositionOn12) .
BIND(?this AS ?pfs1t27) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn11))) AS ?pfsb9) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfse10) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn11, 1) = 'Q')) .
BIND(URI(CONCAT(STR(?this), '#MF_00094a8')) AS ?annotation8) .
BIND(?this AS ?pfs7) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag28) .
}
BIND(IF(BOUND(?tagFT_1), ?caseWithTag28, ?UNBOUND_VARIABLE) AS ?case6) .
}
"xsd:string |
| http://purl.uniprot.org/unirules/MF_00094 | http://www.w3.org/ns/shacl#rule | http://purl.uniprot.org/unirules/MF_00094#construct |
