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http://purl.uniprot.org/unirules/MF_00096#constructhttps://hamap.expasy.org/rdf/vocab#addsTriplehttp://purl.uniprot.org/unirules/MF_00096#construct-template-23
http://purl.uniprot.org/unirules/MF_00096#constructhttps://hamap.expasy.org/rdf/vocab#addsTriplehttp://purl.uniprot.org/unirules/MF_00096#construct-template-54
http://purl.uniprot.org/unirules/MF_00096#constructhttps://hamap.expasy.org/rdf/vocab#addsTriplehttp://purl.uniprot.org/unirules/MF_00096#construct-template-45
http://purl.uniprot.org/unirules/MF_00096#constructhttps://hamap.expasy.org/rdf/vocab#addsTriplehttp://purl.uniprot.org/unirules/MF_00096#construct-template-27
http://purl.uniprot.org/unirules/MF_00096#constructhttps://hamap.expasy.org/rdf/vocab#addsTriplehttp://purl.uniprot.org/unirules/MF_00096#construct-template-47
http://purl.uniprot.org/unirules/MF_00096#constructhttps://hamap.expasy.org/rdf/vocab#addsTriplehttp://purl.uniprot.org/unirules/MF_00096#construct-template-42
http://purl.uniprot.org/unirules/MF_00096#constructhttps://hamap.expasy.org/rdf/vocab#addsTriplehttp://purl.uniprot.org/unirules/MF_00096#construct-template-44
http://purl.uniprot.org/unirules/MF_00096#constructhttp://www.w3.org/ns/shacl#prefixeshttp://purl.uniprot.org/unirules/
http://purl.uniprot.org/unirules/MF_00096#constructhttp://spinrdf.org/sp#wherehttp://purl.uniprot.org/unirules/MF_00096#construct-where-list-0
http://purl.uniprot.org/unirules/MF_00096#constructhttp://spinrdf.org/sp#templateshttp://purl.uniprot.org/unirules/MF_00096#construct-template-list-0
http://purl.uniprot.org/unirules/MF_00096#constructhttp://www.w3.org/ns/shacl#construct"CONSTRUCT { _:36851 up:source unirule:MF_00096 . _:36852 up:source unirule:MF_00096 . _:36853 up:source unirule:MF_00096 . _:36854 up:source unirule:MF_00096 . _:36855 up:source unirule:MF_00096 . _:36856 up:source unirule:MF_00096 . _:36857 up:source unirule:MF_00096 . _:36858 up:source unirule:MF_00096 . _:36859 up:source unirule:MF_00096 . _:36860 up:source unirule:MF_00096 . _:36861 up:source unirule:MF_00096 . _:36862 up:source unirule:MF_00096 . _:36863 up:source unirule:MF_00096 . ?this up:annotation ?annotation2 , ?annotation3 ; up:classifiedWith GO:0003684 , GO:0005524 , GO:0006298 , keyword:227 , keyword:234 , keyword:238 , keyword:547 , keyword:67 ; up:recommendedName ?name0 . ?name0 up:fullName 'DNA mismatch repair protein MutS' ; rdf:type up:Structured_Name . ?gene1 skos:prefLabel 'mutS' . ?annotation2 a up:Function_Annotation ; rdfs:comment 'This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity.' . ?annotation3 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the DNA mismatch repair MutS family.' . ?pfs4 up:annotation ?annotation5 . ?annotation5 faldo:begin ?pfsb6 ; faldo:end ?pfse7 ; up:ligand ?ligand8 ; rdf:type up:Binding_Site_Annotation . ?pfsb6 faldo:position ?thisPositionOn9 ; rdf:type faldo:ExactPosition . ?pfse7 faldo:position ?thisPositionOn10 ; rdf:type faldo:ExactPosition . ?ligand8 rdfs:subClassOf chebi:30616 . _:36864 a rdf:Statement ; up:attribution _:36851 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:36865 a rdf:Statement ; up:attribution _:36852 ; rdf:subject ?gene1 ; rdf:predicate up:encodedBy ; rdf:object ?gene1 . _:36866 a rdf:Statement ; up:attribution _:36853 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation2 . _:36867 a rdf:Statement ; up:attribution _:36854 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:36868 a rdf:Statement ; up:attribution _:36855 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:227 . _:36869 a rdf:Statement ; up:attribution _:36856 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:234 . _:36870 a rdf:Statement ; up:attribution _:36857 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:67 . _:36871 a rdf:Statement ; up:attribution _:36858 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:547 . _:36872 a rdf:Statement ; up:attribution _:36859 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:238 . _:36873 a rdf:Statement ; up:attribution _:36860 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005524 . _:36874 a rdf:Statement ; up:attribution _:36861 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0003684 . _:36875 a rdf:Statement ; up:attribution _:36862 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0006298 . _:36876 a rdf:Statement ; up:source unirule:MF_00096 ; rdf:subject ?pfs4 ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:36877 a rdf:Statement ; up:attribution _:36863 ; rdf:subject ?pfs4 ; rdf:predicate up:annotation ; rdf:object ?annotation5 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_00096 #Rule MF_00096 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2023-06-01 VALUES ?supertaxon11 {taxon:2 taxon:2157} ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00096 . ?thisOrganism rdfs:subClassOf+ ?supertaxon11 . BIND(URI(CONCAT(STR(?this), '#MF_00096a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_00096a2')) AS ?annotation2) . BIND(URI(CONCAT(STR(?this), '#MF_00096a3')) AS ?annotation3) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch16 faldo:location ?templateMotifSequenceMatchRegionP2390917 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP2390919 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP23909MF_0009612 . ?templateMotifSequenceMatchRegionP2390917 faldo:begin ?templateMotifSequenceMatchBeginP2390918 . ?templateMotifSequenceMatchBeginP2390918 faldo:position ?templateMotifSequenceMatchBeginPositionP2390913 ; faldo:reference isoform:P23909-1 . ?templateMotifSequenceProfileAlignmentOperationP2390919 edam:has_input signature:MF_00096 ; rdf:type edam:operation_0300 . ?targetMotifMatch20 faldo:location ?targetMotifMatchRegionMatch21 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0009623 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP23909MF_0009614 . ?targetMotifMatchRegionMatch21 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0009622 . ?targetMotifMatchRegionMatchBeginMF_0009622 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0009615 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0009623 edam:has_input signature:MF_00096 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP23909MF_0009612, 1, (STRLEN(?templateMotifCigarP23909MF_0009612) - STRLEN(REPLACE(?templateMotifCigarP23909MF_0009612, CONCAT('^(?:-*[^-]){', STR(((614 - ?templateMotifSequenceMatchBeginPositionP2390913) + 1)), '}'), '')))), '[a-z]', '')) AS ?step124) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP23909MF_0009614, 1, (STRLEN(?targetMotifMatchCigarP23909MF_0009614) - STRLEN(REPLACE(?targetMotifMatchCigarP23909MF_0009614, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step124), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP23909MF_0009614, 1, (STRLEN(?targetMotifMatchCigarP23909MF_0009614) - STRLEN(REPLACE(?targetMotifMatchCigarP23909MF_0009614, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step124), '}'), '')))), '[^-]', ''))) AS ?step225) . BIND(((?step225 + ?targetMotifMatchRegionMatchBeginPositionMF_0009615) - 1) AS ?thisPositionOn9) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP23909MF_0009612, 1, (STRLEN(?templateMotifCigarP23909MF_0009612) - STRLEN(REPLACE(?templateMotifCigarP23909MF_0009612, CONCAT('^(?:-*[^-]){', STR(((621 - ?templateMotifSequenceMatchBeginPositionP2390913) + 1)), '}'), '')))), '[a-z]', '')) AS ?step126) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP23909MF_0009614, 1, (STRLEN(?targetMotifMatchCigarP23909MF_0009614) - STRLEN(REPLACE(?targetMotifMatchCigarP23909MF_0009614, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step126), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP23909MF_0009614, 1, (STRLEN(?targetMotifMatchCigarP23909MF_0009614) - STRLEN(REPLACE(?targetMotifMatchCigarP23909MF_0009614, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step126), '}'), '')))), '[^-]', ''))) AS ?step227) . BIND(((?step227 + ?targetMotifMatchRegionMatchBeginPositionMF_0009615) - 1) AS ?thisPositionOn10) . BIND(?this AS ?pfs1t28) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn9))) AS ?pfsb6) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn10))) AS ?pfse7) . FILTER (REGEX('GPN[ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX]GKS', SUBSTR(?thisSequenceValue, ?thisPositionOn9, (?thisPositionOn10 - ?thisPositionOn9)))) . BIND(URI(CONCAT(STR(?this), '#MF_00096a5')) AS ?annotation5) . BIND(?this AS ?pfs4) . } } "xsd:string
http://purl.uniprot.org/unirules/MF_00096http://www.w3.org/ns/shacl#rulehttp://purl.uniprot.org/unirules/MF_00096#construct
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