| http://purl.uniprot.org/unirules/MF_00148#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00148#construct-template-53 |
| http://purl.uniprot.org/unirules/MF_00148#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00148#construct-template-54 |
| http://purl.uniprot.org/unirules/MF_00148#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00148#construct-template-32 |
| http://purl.uniprot.org/unirules/MF_00148#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00148#construct-template-48 |
| http://purl.uniprot.org/unirules/MF_00148#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00148#construct-template-56 |
| http://purl.uniprot.org/unirules/MF_00148#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00148#construct-template-24 |
| http://purl.uniprot.org/unirules/MF_00148#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00148#construct-template-52 |
| http://purl.uniprot.org/unirules/MF_00148#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00148#construct-template-18 |
| http://purl.uniprot.org/unirules/MF_00148#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00148#construct-template-42 |
| http://purl.uniprot.org/unirules/MF_00148#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00148#construct-template-37 |
| http://purl.uniprot.org/unirules/MF_00148#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00148#construct-template-41 |
| http://purl.uniprot.org/unirules/MF_00148#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00148#construct-template-15 |
| http://purl.uniprot.org/unirules/MF_00148#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00148#construct-template-6 |
| http://purl.uniprot.org/unirules/MF_00148#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00148#construct-template-51 |
| http://purl.uniprot.org/unirules/MF_00148#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00148#construct-template-29 |
| http://purl.uniprot.org/unirules/MF_00148#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00148#construct-template-49 |
| http://purl.uniprot.org/unirules/MF_00148#construct | http://www.w3.org/ns/shacl#prefixes | http://purl.uniprot.org/unirules/ |
| http://purl.uniprot.org/unirules/MF_00148#construct | http://spinrdf.org/sp#where | http://purl.uniprot.org/unirules/MF_00148#construct-where-list-0 |
| http://purl.uniprot.org/unirules/MF_00148#construct | http://spinrdf.org/sp#templates | http://purl.uniprot.org/unirules/MF_00148#construct-template-list-0 |
| http://purl.uniprot.org/unirules/MF_00148#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:58424 up:source unirule:MF_00148 .
_:58425 up:source unirule:MF_00148 .
_:58426 up:source unirule:MF_00148 .
_:58427 up:source unirule:MF_00148 .
_:58428 up:source unirule:MF_00148 .
_:58429 up:source unirule:MF_00148 .
_:58430 up:source unirule:MF_00148 .
_:58431 up:source unirule:MF_00148 .
_:58432 up:source unirule:MF_00148 .
_:58433 up:source unirule:MF_00148 .
_:58434 up:source unirule:MF_00148 .
_:58435 up:source unirule:MF_00148 .
_:58436 up:source unirule:MF_00148 .
_:58437 up:source unirule:MF_00148 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation7 ;
up:classifiedWith GO:0004844 ,
GO:0005737 ,
GO:0006284 ,
keyword:227 ,
keyword:234 ,
keyword:378 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '3.2.2.27' ;
up:fullName 'Uracil-DNA glycosylase' ;
up:shortName 'UDG' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'ung' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine.' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:enzymeClass .
?annotation5 a up:Subcellular_Location_Annotation .
?annotation5li6 up:cellularComponent .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the uracil-DNA glycosylase (UDG) superfamily. UNG family.' .
?pfs8 up:annotation ?annotation9 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb10 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
_:58438 a rdf:Statement ;
up:attribution _:58424 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:58439 a rdf:Statement ;
up:attribution _:58425 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:58440 a rdf:Statement ;
up:attribution _:58426 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:58441 a rdf:Statement ;
up:attribution _:58427 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:58442 a rdf:Statement ;
up:attribution _:58428 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:58443 a rdf:Statement ;
up:attribution _:58429 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:58444 a rdf:Statement ;
up:attribution _:58430 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:58445 a rdf:Statement ;
up:attribution _:58431 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:227 .
_:58446 a rdf:Statement ;
up:attribution _:58432 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:234 .
_:58447 a rdf:Statement ;
up:attribution _:58433 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:58448 a rdf:Statement ;
up:attribution _:58434 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004844 .
_:58449 a rdf:Statement ;
up:attribution _:58435 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006284 .
_:58450 a rdf:Statement ;
up:attribution _:58436 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:58451 a rdf:Statement ;
up:source unirule:MF_00148 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:58452 a rdf:Statement ;
up:attribution _:58437 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00148
#Rule MF_00148 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2023-11-28
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00148 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_00148a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00148a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_00148a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00148a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00148a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch18 faldo:location ?templateMotifSequenceMatchRegionP1229519 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1229521 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP12295MF_0014814 .
?templateMotifSequenceMatchRegionP1229519 faldo:begin ?templateMotifSequenceMatchBeginP1229520 .
?templateMotifSequenceMatchBeginP1229520 faldo:position ?templateMotifSequenceMatchBeginPositionP1229515 ;
faldo:reference isoform:P12295-1 .
?templateMotifSequenceProfileAlignmentOperationP1229521 edam:has_input signature:MF_00148 ;
rdf:type edam:operation_0300 .
?targetMotifMatch22 faldo:location ?targetMotifMatchRegionMatch23 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0014825 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP12295MF_0014816 .
?targetMotifMatchRegionMatch23 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0014824 .
?targetMotifMatchRegionMatchBeginMF_0014824 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0014817 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0014825 edam:has_input signature:MF_00148 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12295MF_0014814, 1, (STRLEN(?templateMotifCigarP12295MF_0014814) - STRLEN(REPLACE(?templateMotifCigarP12295MF_0014814, CONCAT('^(?:-*[^-]){', STR(((64 - ?templateMotifSequenceMatchBeginPositionP1229515) + 1)), '}'), '')))), '[a-z]', '')) AS ?step126) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12295MF_0014816, 1, (STRLEN(?targetMotifMatchCigarP12295MF_0014816) - STRLEN(REPLACE(?targetMotifMatchCigarP12295MF_0014816, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step126), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12295MF_0014816, 1, (STRLEN(?targetMotifMatchCigarP12295MF_0014816) - STRLEN(REPLACE(?targetMotifMatchCigarP12295MF_0014816, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step126), '}'), '')))), '[^-]', ''))) AS ?step227) .
BIND(((?step227 + ?targetMotifMatchRegionMatchBeginPositionMF_0014817) - 1) AS ?thisPositionOn12) .
BIND(?thisPositionOn12 AS ?thisPositionOn13) .
BIND(?this AS ?pfs1t28) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfse11) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn12, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00148a9')) AS ?annotation9) .
BIND(?this AS ?pfs8) .
}
}
"xsd:string |
| http://purl.uniprot.org/unirules/MF_00148 | http://www.w3.org/ns/shacl#rule | http://purl.uniprot.org/unirules/MF_00148#construct |
