| http://purl.uniprot.org/unirules/MF_00182#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:73336 up:source unirule:MF_00182 .
_:73337 up:source unirule:MF_00182 .
_:73338 up:source unirule:MF_00182 .
_:73339 up:source unirule:MF_00182 .
_:73340 up:source unirule:MF_00182 .
_:73341 up:source unirule:MF_00182 .
_:73342 up:source unirule:MF_00182 .
_:73343 up:source unirule:MF_00182 .
_:73344 up:source unirule:MF_00182 .
_:73345 up:source unirule:MF_00182 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ;
up:classifiedWith GO:0004479 ,
GO:0019988 ,
keyword:648 ,
keyword:808 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.1.2.9' ;
up:fullName 'Methionyl-tRNA formyltransferase' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'fmt' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus.' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the Fmt family.' .
?pfs6 up:annotation ?annotation7 .
?annotation7 faldo:begin ?pfsb8 ;
faldo:end ?pfse9 ;
up:ligand ?ligand10 ;
rdf:type up:Binding_Site_Annotation .
?pfsb8 faldo:position ?thisPositionOn11 ;
rdf:type faldo:ExactPosition .
?pfse9 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?ligand10 rdfs:subClassOf chebi:57453 .
_:73346 a rdf:Statement ;
up:attribution _:73336 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:73347 a rdf:Statement ;
up:attribution _:73337 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:73348 a rdf:Statement ;
up:attribution _:73338 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:73349 a rdf:Statement ;
up:attribution _:73339 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:73350 a rdf:Statement ;
up:attribution _:73340 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:73351 a rdf:Statement ;
up:attribution _:73341 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:73352 a rdf:Statement ;
up:attribution _:73342 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:648 .
_:73353 a rdf:Statement ;
up:attribution _:73343 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004479 .
_:73354 a rdf:Statement ;
up:attribution _:73344 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019988 .
_:73355 a rdf:Statement ;
up:source unirule:MF_00182 ;
rdf:subject ?pfs6 ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:73356 a rdf:Statement ;
up:attribution _:73345 ;
rdf:subject ?pfs6 ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00182
#Rule MF_00182 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-02
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00182 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_00182a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00182a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_00182a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00182a5')) AS ?annotation5) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch17 faldo:location ?templateMotifSequenceMatchRegionP2388218 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP2388220 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP23882MF_0018213 .
?templateMotifSequenceMatchRegionP2388218 faldo:begin ?templateMotifSequenceMatchBeginP2388219 .
?templateMotifSequenceMatchBeginP2388219 faldo:position ?templateMotifSequenceMatchBeginPositionP2388214 ;
faldo:reference isoform:P23882-1 .
?templateMotifSequenceProfileAlignmentOperationP2388220 edam:has_input signature:MF_00182 ;
rdf:type edam:operation_0300 .
?targetMotifMatch21 faldo:location ?targetMotifMatchRegionMatch22 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0018224 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP23882MF_0018215 .
?targetMotifMatchRegionMatch22 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0018223 .
?targetMotifMatchRegionMatchBeginMF_0018223 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0018216 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0018224 edam:has_input signature:MF_00182 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP23882MF_0018213, 1, (STRLEN(?templateMotifCigarP23882MF_0018213) - STRLEN(REPLACE(?templateMotifCigarP23882MF_0018213, CONCAT('^(?:-*[^-]){', STR(((113 - ?templateMotifSequenceMatchBeginPositionP2388214) + 1)), '}'), '')))), '[a-z]', '')) AS ?step125) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP23882MF_0018215, 1, (STRLEN(?targetMotifMatchCigarP23882MF_0018215) - STRLEN(REPLACE(?targetMotifMatchCigarP23882MF_0018215, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step125), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP23882MF_0018215, 1, (STRLEN(?targetMotifMatchCigarP23882MF_0018215) - STRLEN(REPLACE(?targetMotifMatchCigarP23882MF_0018215, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step125), '}'), '')))), '[^-]', ''))) AS ?step226) .
BIND(((?step226 + ?targetMotifMatchRegionMatchBeginPositionMF_0018216) - 1) AS ?thisPositionOn11) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP23882MF_0018213, 1, (STRLEN(?templateMotifCigarP23882MF_0018213) - STRLEN(REPLACE(?templateMotifCigarP23882MF_0018213, CONCAT('^(?:-*[^-]){', STR(((116 - ?templateMotifSequenceMatchBeginPositionP2388214) + 1)), '}'), '')))), '[a-z]', '')) AS ?step127) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP23882MF_0018215, 1, (STRLEN(?targetMotifMatchCigarP23882MF_0018215) - STRLEN(REPLACE(?targetMotifMatchCigarP23882MF_0018215, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step127), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP23882MF_0018215, 1, (STRLEN(?targetMotifMatchCigarP23882MF_0018215) - STRLEN(REPLACE(?targetMotifMatchCigarP23882MF_0018215, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step127), '}'), '')))), '[^-]', ''))) AS ?step228) .
BIND(((?step228 + ?targetMotifMatchRegionMatchBeginPositionMF_0018216) - 1) AS ?thisPositionOn12) .
BIND(?this AS ?pfs1t29) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn11))) AS ?pfsb8) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfse9) .
FILTER (REGEX('[GS][ARNDCQEGHILKMFPSTWYVBZJUOX]LP', SUBSTR(?thisSequenceValue, ?thisPositionOn11, (?thisPositionOn12 - ?thisPositionOn11)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00182a7')) AS ?annotation7) .
BIND(?this AS ?pfs6) .
}
}
"xsd:string |
