| http://purl.uniprot.org/unirules/MF_00187#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:76583 up:source unirule:MF_00187 .
_:76584 up:source unirule:MF_00187 .
_:76585 up:source unirule:MF_00187 .
_:76586 up:source unirule:MF_00187 .
_:76587 up:source unirule:MF_00187 .
_:76588 up:source unirule:MF_00187 .
_:76589 up:source unirule:MF_00187 .
_:76590 up:source unirule:MF_00187 .
_:76591 up:source unirule:MF_00187 .
_:76592 up:source unirule:MF_00187 .
?this up:annotation ?annotation1 ,
?annotation3 ;
up:classifiedWith GO:0005737 ,
GO:0006777 ,
keyword:501 ,
keyword:963 .
?gene0 skos:prefLabel 'fdhD' .
?annotation1 a up:Subcellular_Location_Annotation .
?annotation1li2 up:cellularComponent .
?annotation3 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the FdhD family.' .
?case4 up:classifiedWith GO:0097163 .
?pfs6 up:annotation ?annotation7 .
?annotation7 faldo:begin ?pfsb8 ;
faldo:end ?pfse9 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Cysteine persulfide intermediate' .
?pfsb8 faldo:position ?thisPositionOn10 ;
rdf:type faldo:ExactPosition .
?pfse9 faldo:position ?thisPositionOn11 ;
rdf:type faldo:ExactPosition .
?pfs12 up:annotation ?annotation13 .
?annotation13 faldo:begin ?pfsb14 ;
faldo:end ?pfse15 ;
up:ligand ?ligand16 ;
rdf:type up:Binding_Site_Annotation .
?pfsb14 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse15 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?ligand16 rdfs:subClassOf chebi:60539 .
_:76593 a rdf:Statement ;
up:attribution _:76583 ;
rdf:subject ?gene0 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene0 .
_:76594 a rdf:Statement ;
up:attribution _:76584 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation1 .
_:76595 a rdf:Statement ;
up:attribution _:76585 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:76596 a rdf:Statement ;
up:attribution _:76586 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:76597 a rdf:Statement ;
up:attribution _:76587 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:501 .
_:76598 a rdf:Statement ;
up:attribution _:76588 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:76599 a rdf:Statement ;
up:attribution _:76589 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006777 .
_:76600 a rdf:Statement ;
up:attribution _:76590 ;
rdf:subject ?case4 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0097163 .
_:76601 a rdf:Statement ;
up:source unirule:MF_00187 ;
rdf:subject ?pfs6 ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:76602 a rdf:Statement ;
up:attribution _:76591 ;
rdf:subject ?pfs6 ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:76603 a rdf:Statement ;
up:source unirule:MF_00187 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:76604 a rdf:Statement ;
up:attribution _:76592 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00187
#Rule MF_00187 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2023-06-01
VALUES ?supertaxon19 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00187 .
?thisOrganism rdfs:subClassOf+ ?supertaxon19 .
BIND(URI(CONCAT(STR(?this), '#MF_00187a1')) AS ?annotation1) .
BIND(URI(CONCAT(STR(?this), '#MF_00187a3')) AS ?annotation3) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch24 faldo:location ?templateMotifSequenceMatchRegionP3217725 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3217727 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP32177MF_0018720 .
?templateMotifSequenceMatchRegionP3217725 faldo:begin ?templateMotifSequenceMatchBeginP3217726 .
?templateMotifSequenceMatchBeginP3217726 faldo:position ?templateMotifSequenceMatchBeginPositionP3217721 ;
faldo:reference isoform:P32177-1 .
?templateMotifSequenceProfileAlignmentOperationP3217727 edam:has_input signature:MF_00187 ;
rdf:type edam:operation_0300 .
?targetMotifMatch28 faldo:location ?targetMotifMatchRegionMatch29 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0018731 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP32177MF_0018722 .
?targetMotifMatchRegionMatch29 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0018730 .
?targetMotifMatchRegionMatchBeginMF_0018730 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0018723 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0018731 edam:has_input signature:MF_00187 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagpersulfide) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32177MF_0018720, 1, (STRLEN(?templateMotifCigarP32177MF_0018720) - STRLEN(REPLACE(?templateMotifCigarP32177MF_0018720, CONCAT('^(?:-*[^-]){', STR(((121 - ?templateMotifSequenceMatchBeginPositionP3217721) + 1)), '}'), '')))), '[a-z]', '')) AS ?step132) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32177MF_0018722, 1, (STRLEN(?targetMotifMatchCigarP32177MF_0018722) - STRLEN(REPLACE(?targetMotifMatchCigarP32177MF_0018722, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step132), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32177MF_0018722, 1, (STRLEN(?targetMotifMatchCigarP32177MF_0018722) - STRLEN(REPLACE(?targetMotifMatchCigarP32177MF_0018722, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step132), '}'), '')))), '[^-]', ''))) AS ?step233) .
BIND(((?step233 + ?targetMotifMatchRegionMatchBeginPositionMF_0018723) - 1) AS ?thisPositionOn10) .
BIND(?thisPositionOn10 AS ?thisPositionOn11) .
BIND(?this AS ?pfs1t34) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn10))) AS ?pfsb8) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn11))) AS ?pfse9) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn10, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_00187a7')) AS ?annotation7) .
BIND(?this AS ?pfs6) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch39 faldo:location ?templateMotifSequenceMatchRegionP3217740 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3217742 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP32177MF_0018735 .
?templateMotifSequenceMatchRegionP3217740 faldo:begin ?templateMotifSequenceMatchBeginP3217741 .
?templateMotifSequenceMatchBeginP3217741 faldo:position ?templateMotifSequenceMatchBeginPositionP3217736 ;
faldo:reference isoform:P32177-1 .
?templateMotifSequenceProfileAlignmentOperationP3217742 edam:has_input signature:MF_00187 ;
rdf:type edam:operation_0300 .
?targetMotifMatch43 faldo:location ?targetMotifMatchRegionMatch44 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0018746 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP32177MF_0018737 .
?targetMotifMatchRegionMatch44 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0018745 .
?targetMotifMatchRegionMatchBeginMF_0018745 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0018738 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0018746 edam:has_input signature:MF_00187 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32177MF_0018735, 1, (STRLEN(?templateMotifCigarP32177MF_0018735) - STRLEN(REPLACE(?templateMotifCigarP32177MF_0018735, CONCAT('^(?:-*[^-]){', STR(((260 - ?templateMotifSequenceMatchBeginPositionP3217736) + 1)), '}'), '')))), '[a-z]', '')) AS ?step147) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32177MF_0018737, 1, (STRLEN(?targetMotifMatchCigarP32177MF_0018737) - STRLEN(REPLACE(?targetMotifMatchCigarP32177MF_0018737, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step147), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32177MF_0018737, 1, (STRLEN(?targetMotifMatchCigarP32177MF_0018737) - STRLEN(REPLACE(?targetMotifMatchCigarP32177MF_0018737, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step147), '}'), '')))), '[^-]', ''))) AS ?step248) .
BIND(((?step248 + ?targetMotifMatchRegionMatchBeginPositionMF_0018738) - 1) AS ?thisPositionOn17) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32177MF_0018735, 1, (STRLEN(?templateMotifCigarP32177MF_0018735) - STRLEN(REPLACE(?templateMotifCigarP32177MF_0018735, CONCAT('^(?:-*[^-]){', STR(((265 - ?templateMotifSequenceMatchBeginPositionP3217736) + 1)), '}'), '')))), '[a-z]', '')) AS ?step149) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32177MF_0018737, 1, (STRLEN(?targetMotifMatchCigarP32177MF_0018737) - STRLEN(REPLACE(?targetMotifMatchCigarP32177MF_0018737, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step149), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32177MF_0018737, 1, (STRLEN(?targetMotifMatchCigarP32177MF_0018737) - STRLEN(REPLACE(?targetMotifMatchCigarP32177MF_0018737, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step149), '}'), '')))), '[^-]', ''))) AS ?step250) .
BIND(((?step250 + ?targetMotifMatchRegionMatchBeginPositionMF_0018738) - 1) AS ?thisPositionOn18) .
BIND(?this AS ?pfs2t51) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb14) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse15) .
FILTER (REGEX('F[ARNDCQEGHILKMFPSTWYVBZJUOX][KR][ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX][KR]', SUBSTR(?thisSequenceValue, ?thisPositionOn17, (?thisPositionOn18 - ?thisPositionOn17)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00187a13')) AS ?annotation13) .
BIND(?this AS ?pfs12) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag52) .
}
BIND(IF(BOUND(?tagpersulfide), ?caseWithTag52, ?UNBOUND_VARIABLE) AS ?case4) .
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag53) .
}
BIND(IF(BOUND(?tagpersulfide), ?caseWithTag53, ?UNBOUND_VARIABLE) AS ?case5) .
}
"xsd:string |
