| http://purl.uniprot.org/unirules/MF_00230#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00230#construct-template-49 |
| http://purl.uniprot.org/unirules/MF_00230#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00230#construct-template-6 |
| http://purl.uniprot.org/unirules/MF_00230#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00230#construct-template-50 |
| http://purl.uniprot.org/unirules/MF_00230#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00230#construct-template-8 |
| http://purl.uniprot.org/unirules/MF_00230#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00230#construct-template-51 |
| http://purl.uniprot.org/unirules/MF_00230#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00230#construct-template-52 |
| http://purl.uniprot.org/unirules/MF_00230#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00230#construct-template-53 |
| http://purl.uniprot.org/unirules/MF_00230#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00230#construct-template-54 |
| http://purl.uniprot.org/unirules/MF_00230#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00230#construct-template-55 |
| http://purl.uniprot.org/unirules/MF_00230#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00230#construct-template-56 |
| http://purl.uniprot.org/unirules/MF_00230#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00230#construct-template-57 |
| http://purl.uniprot.org/unirules/MF_00230#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00230#construct-template-58 |
| http://purl.uniprot.org/unirules/MF_00230#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00230#construct-template-59 |
| http://purl.uniprot.org/unirules/MF_00230#construct | http://www.w3.org/ns/shacl#prefixes | http://purl.uniprot.org/unirules/ |
| http://purl.uniprot.org/unirules/MF_00230#construct | http://spinrdf.org/sp#where | http://purl.uniprot.org/unirules/MF_00230#construct-where-list-0 |
| http://purl.uniprot.org/unirules/MF_00230#construct | http://spinrdf.org/sp#templates | http://purl.uniprot.org/unirules/MF_00230#construct-template-list-0 |
| http://purl.uniprot.org/unirules/MF_00230#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:97594 up:source unirule:MF_00230 .
_:97595 up:source unirule:MF_00230 .
_:97596 up:source unirule:MF_00230 .
_:97597 up:source unirule:MF_00230 .
_:97598 up:source unirule:MF_00230 .
_:97599 up:source unirule:MF_00230 .
_:97600 up:source unirule:MF_00230 .
_:97601 up:source unirule:MF_00230 .
_:97602 up:source unirule:MF_00230 .
_:97603 up:source unirule:MF_00230 .
_:97604 up:source unirule:MF_00230 .
_:97605 up:source unirule:MF_00230 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ;
up:classifiedWith GO:0008939 ,
keyword:169 ,
keyword:328 ,
keyword:808 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.4.2.21' ;
up:fullName 'Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase' ;
up:shortName 'NN:DBI PRT' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'N(1)-alpha-phosphoribosyltransferase' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'cobT' .
?annotation3 a up:Function_Annotation ;
rdfs:comment "Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6-dimethylbenzimidazole (DMB)." .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 a up:Pathway_Annotation ;
rdfs:comment 'Nucleoside biosynthesis; alpha-ribazole biosynthesis; alpha-ribazole from 5,6-dimethylbenzimidazole: step 1/2.' .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the CobT family.' .
?pfs9 up:annotation ?annotation10 .
?annotation10 faldo:begin ?pfsb11 ;
faldo:end ?pfse12 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb11 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfse12 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
_:97606 a rdf:Statement ;
up:attribution _:97594 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:97607 a rdf:Statement ;
up:attribution _:97595 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:97608 a rdf:Statement ;
up:attribution _:97596 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:97609 a rdf:Statement ;
up:attribution _:97597 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:97610 a rdf:Statement ;
up:attribution _:97598 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:97611 a rdf:Statement ;
up:attribution _:97599 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:97612 a rdf:Statement ;
up:attribution _:97600 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:97613 a rdf:Statement ;
up:attribution _:97601 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:169 .
_:97614 a rdf:Statement ;
up:attribution _:97602 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:97615 a rdf:Statement ;
up:attribution _:97603 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:328 .
_:97616 a rdf:Statement ;
up:attribution _:97604 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008939 .
_:97617 a rdf:Statement ;
up:source unirule:MF_00230 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:97618 a rdf:Statement ;
up:attribution _:97605 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00230
#Rule MF_00230 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-02
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00230 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_00230a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00230a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00230a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00230a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00230a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00230a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch19 faldo:location ?templateMotifSequenceMatchRegionP3656220 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3656222 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP36562MF_0023015 .
?templateMotifSequenceMatchRegionP3656220 faldo:begin ?templateMotifSequenceMatchBeginP3656221 .
?templateMotifSequenceMatchBeginP3656221 faldo:position ?templateMotifSequenceMatchBeginPositionP3656216 ;
faldo:reference isoform:P36562-1 .
?templateMotifSequenceProfileAlignmentOperationP3656222 edam:has_input signature:MF_00230 ;
rdf:type edam:operation_0300 .
?targetMotifMatch23 faldo:location ?targetMotifMatchRegionMatch24 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0023026 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP36562MF_0023017 .
?targetMotifMatchRegionMatch24 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0023025 .
?targetMotifMatchRegionMatchBeginMF_0023025 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0023018 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0023026 edam:has_input signature:MF_00230 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP36562MF_0023015, 1, (STRLEN(?templateMotifCigarP36562MF_0023015) - STRLEN(REPLACE(?templateMotifCigarP36562MF_0023015, CONCAT('^(?:-*[^-]){', STR(((318 - ?templateMotifSequenceMatchBeginPositionP3656216) + 1)), '}'), '')))), '[a-z]', '')) AS ?step127) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP36562MF_0023017, 1, (STRLEN(?targetMotifMatchCigarP36562MF_0023017) - STRLEN(REPLACE(?targetMotifMatchCigarP36562MF_0023017, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step127), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP36562MF_0023017, 1, (STRLEN(?targetMotifMatchCigarP36562MF_0023017) - STRLEN(REPLACE(?targetMotifMatchCigarP36562MF_0023017, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step127), '}'), '')))), '[^-]', ''))) AS ?step228) .
BIND(((?step228 + ?targetMotifMatchRegionMatchBeginPositionMF_0023018) - 1) AS ?thisPositionOn13) .
BIND(?thisPositionOn13 AS ?thisPositionOn14) .
BIND(?this AS ?pfs1t29) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb11) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse12) .
FILTER (BOUND(?thisPositionOn13)) .
BIND(URI(CONCAT(STR(?this), '#MF_00230a10')) AS ?annotation10) .
BIND(?this AS ?pfs9) .
}
OPTIONAL {
?this a up:Protein .
VALUES ?supertaxon30 {taxon:561 taxon:620 taxon:590}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon30 .
BIND(?this AS ?case8) .
}
}
"xsd:string |
| http://purl.uniprot.org/unirules/MF_00230 | http://www.w3.org/ns/shacl#rule | http://purl.uniprot.org/unirules/MF_00230#construct |
