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http://purl.uniprot.org/unirules/MF_00272#constructhttp://www.w3.org/ns/shacl#construct"CONSTRUCT { _:110603 up:source unirule:MF_00272 . _:110604 up:source unirule:MF_00272 . _:110605 up:source unirule:MF_00272 . _:110606 up:source unirule:MF_00272 . _:110607 up:source unirule:MF_00272 . _:110608 up:source unirule:MF_00272 . _:110609 up:source unirule:MF_00272 . _:110610 up:source unirule:MF_00272 . _:110611 up:source unirule:MF_00272 . ?this up:annotation ?annotation1 , ?annotation2 , ?annotation3 , ?annotation4 ; up:classifiedWith GO:0019464 , keyword:450 . ?gene0 skos:prefLabel 'gcvH' . ?annotation1 a up:Function_Annotation ; rdfs:comment 'The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.' . ?annotation2 up:cofactor chebi:83088 ; rdf:type up:Cofactor_Annotation ; rdfs:comment 'Binds 1 lipoyl cofactor covalently.' . ?annotation3 a up:Subunit_Annotation ; rdfs:comment 'The glycine cleavage system is composed of four proteins: P, T, L and H.' . ?annotation4 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the GcvH family.' . ?case6 up:classifiedWith GO:0009249 . ?pfs8 up:annotation ?annotation9 . ?annotation9 faldo:begin ?pfsb10 ; faldo:end ?pfse11 ; rdf:type up:Modified_Residue_Annotation ; rdfs:comment 'N6-lipoyllysine' . ?pfsb10 faldo:position ?thisPositionOn12 ; rdf:type faldo:ExactPosition . ?pfse11 faldo:position ?thisPositionOn13 ; rdf:type faldo:ExactPosition . _:110612 a rdf:Statement ; up:attribution _:110603 ; rdf:subject ?gene0 ; rdf:predicate up:encodedBy ; rdf:object ?gene0 . _:110613 a rdf:Statement ; up:attribution _:110604 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation1 . _:110614 a rdf:Statement ; up:attribution _:110605 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation2 . _:110615 a rdf:Statement ; up:attribution _:110606 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:110616 a rdf:Statement ; up:attribution _:110607 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:110617 a rdf:Statement ; up:attribution _:110608 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:450 . _:110618 a rdf:Statement ; up:attribution _:110609 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0019464 . _:110619 a rdf:Statement ; up:attribution _:110610 ; rdf:subject ?case6 ; rdf:predicate up:classifiedWith ; rdf:object GO:0009249 . _:110620 a rdf:Statement ; up:source unirule:MF_00272 ; rdf:subject ?pfs8 ; rdf:predicate up:annotation ; rdf:object ?annotation9 . _:110621 a rdf:Statement ; up:attribution _:110611 ; rdf:subject ?pfs8 ; rdf:predicate up:annotation ; rdf:object ?annotation9 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_00272 #Rule MF_00272 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2023-06-01 VALUES ?supertaxon14 {taxon:2 taxon:2157} ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00272 . ?thisOrganism rdfs:subClassOf+ ?supertaxon14 . BIND(URI(CONCAT(STR(?this), '#MF_00272a1')) AS ?annotation1) . BIND(URI(CONCAT(STR(?this), '#MF_00272a2')) AS ?annotation2) . BIND(URI(CONCAT(STR(?this), '#MF_00272a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_00272a4')) AS ?annotation4) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch19 faldo:location ?templateMotifSequenceMatchRegionP0A6T920 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6T922 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A6T9MF_0027215 . ?templateMotifSequenceMatchRegionP0A6T920 faldo:begin ?templateMotifSequenceMatchBeginP0A6T921 . ?templateMotifSequenceMatchBeginP0A6T921 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6T916 ; faldo:reference isoform:P0A6T9-1 . ?templateMotifSequenceProfileAlignmentOperationP0A6T922 edam:has_input signature:MF_00272 ; rdf:type edam:operation_0300 . ?targetMotifMatch23 faldo:location ?targetMotifMatchRegionMatch24 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0027226 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A6T9MF_0027217 . ?targetMotifMatchRegionMatch24 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0027225 . ?targetMotifMatchRegionMatchBeginMF_0027225 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0027218 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0027226 edam:has_input signature:MF_00272 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6T9MF_0027215, 1, (STRLEN(?templateMotifCigarP0A6T9MF_0027215) - STRLEN(REPLACE(?templateMotifCigarP0A6T9MF_0027215, CONCAT('^(?:-*[^-]){', STR(((65 - ?templateMotifSequenceMatchBeginPositionP0A6T916) + 1)), '}'), '')))), '[a-z]', '')) AS ?step127) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6T9MF_0027217, 1, (STRLEN(?targetMotifMatchCigarP0A6T9MF_0027217) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6T9MF_0027217, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step127), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6T9MF_0027217, 1, (STRLEN(?targetMotifMatchCigarP0A6T9MF_0027217) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6T9MF_0027217, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step127), '}'), '')))), '[^-]', ''))) AS ?step228) . BIND(((?step228 + ?targetMotifMatchRegionMatchBeginPositionMF_0027218) - 1) AS ?thisPositionOn12) . BIND(?thisPositionOn12 AS ?thisPositionOn13) . BIND(?this AS ?pfs1t29) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfsb10) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfse11) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn12, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_00272a9')) AS ?annotation9) . BIND(?this AS ?pfs8) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2157 . BIND(?this AS ?case5) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:1385 . BIND(?this AS ?case6) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2 . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:1385 . })) . BIND(?this AS ?case7) . } } "xsd:string
http://purl.uniprot.org/unirules/MF_00272http://www.w3.org/ns/shacl#rulehttp://purl.uniprot.org/unirules/MF_00272#construct
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